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"ath:AT1G54740", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G54740", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MRMSDNE", "url": "https://omabrowser.org/oma/group/MRMSDNE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33155", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33155", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33155:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33155:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11250", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11250", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G54740", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G54740", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4HX10", "url": 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"MSFYKRSFHSFLGQTNTKGMPFESGLGHDETQSHGLMLCTEYLGFESYDMRMSDNEVENKMTCHAEVETERVEAKRRKTKENVVVQAQKKQFPPPLSSLNSRGQRYFYLRPVRKDGRLELTQVMVDRPEIFHVSRVDGRLRLHFVDGVENPIRAYSGPQEIVALEEEPKGLGNEKEGGEISRSDLECGREINEDDNDGACNQGMDLSIISDDSGARSWRCKSSHDVSVNSNNDVAHFHDDHDTREWMYNSGFKIVASRNHDENNHHHYHHRHRHHIHPYHHHNSNNNMNLWTRTYVRTR", "length": 299, "header": "tr|F4HX10-1|F4HX10_ARATH Isoform 1 of FANTASTIC four-like protein (DUF3049) OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4HX10-1" }, "locus": { "chromosome": "1", "start_pos": 20430769, "end_pos": 20431986, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G54740.1", "url": "https://www.ensemblgenomes.org/id/AT1G54740.1" }, { "database": "Ensembl Peptide", "id": "AT1G54740.1", "url": "https://www.ensemblgenomes.org/id/AT1G54740.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", 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"IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G62160", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G62160", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CIHAILI", "url": "https://omabrowser.org/oma/group/CIHAILI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF347", "url": 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"MVAASSGDEQDDELRFFILSFLKASSTDELNAVLRKIASSVFVDGSKKGGPKMRGHKNFEKQYIAAYDGFKVLRLPYRQGRDNTNRNFSMYFYLPDKKGELDDLLKRMTSTPGFLDSHTPRERVEVDEFRIPKFKIEFGFEASSVFSDFEIDVSFYQKALIEIDEEGTEAAAATAFVDNEDGCGFVETLDFVADHPFLFLIREEQTGTVLFAGQIFDPSA", "length": 220, "header": "tr|F4HX47-1|F4HX47_ARATH Isoform 1 of Serine protease inhibitor (SERPIN) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4HX47-1" }, "isoforms": [ { "isoform_ac": "F4HX47-1", "url": "https://www.uniprot.org/uniprotkb/F4HX47/entry#F4HX47-1", "sequence": { "sequence": "MVAASSGDEQDDELRFFILSFLKASSTDELNAVLRKIASSVFVDGSKKGGPKMRGHKNFEKQYIAAYDGFKVLRLPYRQGRDNTNRNFSMYFYLPDKKGELDDLLKRMTSTPGFLDSHTPRERVEVDEFRIPKFKIEFGFEASSVFSDFEIDVSFYQKALIEIDEEGTEAAAATAFVDNEDGCGFVETLDFVADHPFLFLIREEQTGTVLFAGQIFDPSA", "length": 220, "header": "tr|F4HX47-1|F4HX47_ARATH Isoform 1 of Serine protease inhibitor (SERPIN) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4HX47-1" }, "locus": { "chromosome": "1", "start_pos": 22972352, "end_pos": 22973303, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G62160.1", "url": "https://www.ensemblgenomes.org/id/AT1G62160.1" }, { "database": "Ensembl Peptide", "id": "AT1G62160.1", "url": "https://www.ensemblgenomes.org/id/AT1G62160.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, 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domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HYN6-1" }, "locus": { "chromosome": "1", "start_pos": 20541837, "end_pos": 20545821, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G55050.1", "url": "https://www.ensemblgenomes.org/id/AT1G55050.1" }, { "database": "Ensembl Peptide", "id": "AT1G55050.1", "url": "https://www.ensemblgenomes.org/id/AT1G55050.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HYN6", "url": "https://www.uniprot.org/uniprotkb/F4HYN6" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Maor Rudy, Jones Alex, N\u00fchse Thomas S, Studholme David J, Peck Scott C, Shirasu Ken", "evidence": [ { "database": "UniProtKB", "id": "F4HYN6", "url": "https://www.uniprot.org/uniprotkb/F4HYN6" } ], "reference": [ { "type": "PubMed", "id": "17272265", "url": "https://glygen.org/publication/PubMed/17272265" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HYN6", "url": "https://www.uniprot.org/uniprotkb/F4HYN6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G55050", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G55050", "resource": "KEGG Pathway" } ], 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"evidence": [ { "id": "F4HYU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYU6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HYU6", "url": "https://www.uniprot.org/uniprotkb/F4HYU6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4HYU6", "locus": {} } ], "crossref": [ { "id": "F4HYU6", "url": "https://alphafold.ebi.ac.uk/entry/F4HYU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G62610", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G62610", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd05233", "url": 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"id": "PTHR44375", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44375", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44375:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44375:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G62610", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G62610", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4HYU4", "url": "https://www.uniprot.org/uniprotkb/F4HYU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HYU4-1", "url": "https://www.uniprot.org/uniprotkb/F4HYU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HYU6", "url": "https://www.uniprot.org/uniprotkb/F4HYU6", 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"https://www.uniprot.org/uniprotkb/F4HYU6/entry#F4HYU4-1", "sequence": { "sequence": "MQQVLKQLEPWCELKDKVVLVTGASSGIGREICLDLCKAGCKIVAAARRVDRLNSLCSEINSFGAIGVQAAALELDVSSDADTIRKAVKEAWEIFGTIDVLINNAGIRGNVKSSLDLSKEEWDKVFRTNLTGSWLISKYVCLLMRDAKRGGSVINVSSISGLHRGLLRGGLAYACSKGGVDTMTRMMAIELAVYKIRVNSIAPGIFRSEITQGLFQKEWLEKVTEKIVPLKMQQTVDPGLTSLVRYLIHDSSQYVTGNTYIVDSGATLPGVPIFSSL", "length": 277, "header": "tr|F4HYU4-1|F4HYU6_ARATH Computationally mapped isoform of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4HYU6-1" }, "locus": { "chromosome": "1", "start_pos": 23181463, "end_pos": 23183227, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G62610.1", "url": "https://www.ensemblgenomes.org/id/AT1G62610.1" }, { "database": "Ensembl Peptide", "id": "AT1G62610.1", "url": "https://www.ensemblgenomes.org/id/AT1G62610.1" } ] } }, { "isoform_ac": "F4HYU6-1", "url": "https://www.uniprot.org/uniprotkb/F4HYU6/entry#F4HYU6-1", "sequence": { "sequence": "MSNHQTKQVLKQLEPWCELKDKVVLVTGASSGIGREICLDLCKAGCKIVAAARRVDRLNSLCSEINSFGAIGVQAAALELDVSSDADTIRKAVKEAWEIFGTIDVLINNAGIRGNVKSSLDLSKEEWDKVFRTNLTGSWLISKYVCLLMRDAKRGGSVINVSSISGLHRGLLRGGLAYACSKGGVDTMTRMMAIELAVYKIRVNSIAPGIFRSEITQGLFQKEWLEKVTEKIVPLKMQQTVDPGLTSLVRYLIHDSSQYVTGNTYIVDSGATLPGVPIFSSL", "length": 282, "header": "tr|F4HYU6-1|F4HYU6_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4HYU6-1" }, "locus": { "chromosome": "1", "start_pos": 23181508, "end_pos": 23183183, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G62610.4", "url": "https://www.ensemblgenomes.org/id/AT1G62610.4" }, { "database": "Ensembl Peptide", "id": "AT1G62610.4", "url": "https://www.ensemblgenomes.org/id/AT1G62610.4" } ] } }, { "isoform_ac": "Q304C6-1", "url": "https://www.uniprot.org/uniprotkb/F4HYU6/entry#Q304C6-1", "sequence": { "sequence": "MQVLKQLEPWCELKDKVVLVTGASSGIGREICLDLCKAGCKIVAAARRVDRLNSLCSEINSFGAIGVQAAALELDVSSDADTIRKAVKEAWEIFGTIDVLINNAGIRGNVKSSLDLSKEEWDKVFRTNLTGSWLISKYVCLLMRDAKRGGSVINVSSISGLHRGLLRGGLAYACSKGGVDTMTRMMAIELAVYKIRVNSIAPGIFRSEITQGLFQKEWLEKVTEKIVPLKMQQTVDPGLTSLVRYLIHDSSQYVTGNTYIVDSGATLPGVPIFSSL", "length": 276, "header": "tr|Q304C6-1|F4HYU6_ARATH Computationally mapped isoform of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4HYU6-1" }, "locus": { "chromosome": "1", "start_pos": 23181463, "end_pos": 23183227, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G62610.2", "url": "https://www.ensemblgenomes.org/id/AT1G62610.2" }, { "database": "Ensembl Peptide", "id": "AT1G62610.2", "url": "https://www.ensemblgenomes.org/id/AT1G62610.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis 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R W", "evidence": [ { "database": "UniProtKB", "id": "Q304C6", "url": "https://www.uniprot.org/uniprotkb/Q304C6" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q304C6", "url": "https://www.uniprot.org/uniprotkb/Q304C6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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"isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 160, "end_pos": 162 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4HYV4-1", "uniprot_ac": "F4HYV4", "uniprot_id": "F4HYV4_ARATH", "mass": { "chemical_mass": 16541.0, "monoisotopic_mass": 16541.0 }, "refseq": {}, "gene_names": [ { "name": "F23N19.23", "type": "synonym", "evidence": [ { "id": "F4HYV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYV4" } ] }, { "name": "F23N19_23", "type": "synonym", "evidence": [ { "id": "F4HYV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYV4" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4HYV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HYV4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HYV4", "url": "https://www.uniprot.org/uniprotkb/F4HYV4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4HYV4", "locus": {} } ], "crossref": [ { "id": "842566", "url": "https://www.ncbi.nlm.nih.gov/gene/842566", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT1G62690", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G62690", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AKSKCPW", "url": 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Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HZ48", "url": "https://www.uniprot.org/uniprotkb/F4HZ48" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HZ48", "url": "https://www.uniprot.org/uniprotkb/F4HZ48" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": 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"tr|F4HZ54-1|F4HZ54_ARATH Isoform 1 of SAUR-like auxin-responsive protein family OS=Arabidopsis thaliana OX=3702 GN=SAUR52 PE=3 SV=1 CANONICAL=F4HZ54-1" }, "isoforms": [ { "isoform_ac": "F4HZ54-1", "url": "https://www.uniprot.org/uniprotkb/F4HZ54/entry#F4HZ54-1", "sequence": { "sequence": "MAGGLGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVVRATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDSTRSRRFTCPDDFQKNCHVVGIRSKLDLWIESRPLLHGVTEKAVW", "length": 154, "header": "tr|F4HZ54-1|F4HZ54_ARATH Isoform 1 of SAUR-like auxin-responsive protein family OS=Arabidopsis thaliana OX=3702 GN=SAUR52 PE=3 SV=1 CANONICAL=F4HZ54-1" }, "locus": { "chromosome": "1", "start_pos": 28382813, "end_pos": 28383769, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G75590.1", "url": "https://www.ensemblgenomes.org/id/AT1G75590.1" }, { "database": "Ensembl Peptide", "id": "AT1G75590.1", "url": "https://www.ensemblgenomes.org/id/AT1G75590.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HZ54", "url": "https://www.uniprot.org/uniprotkb/F4HZ54" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HZ54", "url": "https://www.uniprot.org/uniprotkb/F4HZ54" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G75590", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G75590", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4HZ54", "url": "https://www.uniprot.org/uniprotkb/F4HZ54" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to auxin", "id": "GO:0009733", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009733", "evidence": [ { "database": "UniProtKB", "id": "F4HZ54", "url": "https://www.uniprot.org/uniprotkb/F4HZ54" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4HZ54-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 154, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4HZ54-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4HZ54" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4HZ82-1", "uniprot_ac": "F4HZ82", "uniprot_id": "F4HZ82_ARATH", "mass": { "chemical_mass": 135990.0, "monoisotopic_mass": 135990.0 }, "refseq": { "ac": "NP_171788", "name": "AAA-type ATPase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_171788" }, "gene_names": [ { "name": "F22D16.11", "type": "synonym", "evidence": [ { "id": "NP_171788", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_171788" }, { "id": "F4HZ82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZ82" } ] }, { "name": "F22D16_11", "type": "synonym", "evidence": [ { "id": "NP_171788", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_171788" }, { "id": "F4HZ82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZ82" } ] } ], "protein_names": [ { "name": "AAA-type ATPase family protein", "type": "synonym", "evidence": [ { "id": "NP_171788", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_171788" }, { "id": "F4HZ82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZ82/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HZ82", "url": "https://www.uniprot.org/uniprotkb/F4HZ82" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4HZ82", "locus": {} } ], "crossref": [ { "id": "F4HZ82", "url": "https://alphafold.ebi.ac.uk/entry/F4HZ82", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G02890", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G02890", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd19520", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19520", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "839507", "url": "https://www.ncbi.nlm.nih.gov/gene/839507", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003959", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003959", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G02890", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G02890", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HAYIYQQ", "url": "https://omabrowser.org/oma/group/HAYIYQQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4HZ81", "url": "https://www.orthodb.org/?gene=F4HZ81", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4HZ82", "url": "https://www.orthodb.org/?gene=F4HZ82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45644", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45644", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45644:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45644:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17862", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17862", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24933", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24933", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_171788", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_171788", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G02890", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G02890", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4HZ81", "url": "https://www.uniprot.org/uniprotkb/F4HZ81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HZ81-1", "url": "https://www.uniprot.org/uniprotkb/F4HZ81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HZ82", "url": "https://www.uniprot.org/uniprotkb/F4HZ82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HZ82-1", "url": "https://www.uniprot.org/uniprotkb/F4HZ82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDTRRSSSASKRFCAATSSSSRPTKRSKAAAEPASSSSASEVPIDNQAPVSDPGSISGDPELRTSDPQSNDAERPVTTTDVPAMETDTNPELEGLVTPTPAGEVVVEAEKSKSSKKRIAKAPWAKLLSQFPQNPHLVMRGSVFTVGRRACDLCIRDHSMPNVLCELRQSEHGGPSVASLEIIGNGVLVQVNGKIYQRSTCVHLRGGDEIIFTTPGKHAYIFQPLKDENLAAPDRTSSLSLFEAQSAPLKGLHVETRARDSSSVDGTASLLASISKLQNVPFLPPTAKSVKRQQNSEVPVLPSSCDDFILDVDLNDADSNNDHAAIASMEKTVASTSCAANDDHDADGNGMDPFQEPEAGNIPDPAYEIRPILSLLGDPSEFDLRGSISKILVDERREVREMPKEYERPSASVLTRRQAHKDSLRGGILNPQDIEVSFENFPYFLSGTTKDVLMISTYAHIKYGKEYAEYASDLPTACPRILLSGPSGSEIYQEMLAKALAKQCGAKLMIVDSLLLPGGSTPKEADTTKESSRRERLSVLAKRAVQAAQAAVLQHKKPISSVEAGITGGSTLSSQAVRRQEVSTATSKSYTFKAGDRVRFLGPSTSSLASLRAPPRGPATGFQGKVLLAFEGNGSSKIGVRFDRSIPDGNDLGGLCEEDHGFFCTASSLRLESSSSDDADKLAINEIFEVAFNESERGSLILFLKDIEKSVSGNTDVYITLKSKLENLPENIVVIASQTQLDNRKEKSHPGGFLFTKFGSNQTALLDLAFPDTFGGRLQDRNTEMPKAVKQITRLFPNKVTIQLPEDEASLVDWKDKLERDTEILKAQANITSIRAVLSKNQLVCPDIEILCIKDQTLPSDSVEKVVGFAFNHHLMNCSEPTVKDNKLIISAESITYGLQLLHEIQNENKSTKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAIANMTDGYSGSDLKNLCVTAAHLPIREILEKEKKERSVAQAENRAMPQLYSSTDVRPLNMNDFKTAHDQVCASVASDSSNMNELQQWNELYGEGGSRKKTSLSYFM", "length": 1246, "header": "tr|F4HZ82-1|F4HZ82_ARATH Isoform 1 of AAA-type ATPase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZ82-1" }, "isoforms": [ { "isoform_ac": "F4HZ81-1", "url": "https://www.uniprot.org/uniprotkb/F4HZ82/entry#F4HZ81-1", "sequence": { "sequence": "MVDTRRSSSASKRFCAATSSSSRPTKRSKAAAEPASSSSASEVPIDNQAPVSDPGSISGDPELRTSDPQSNDAERPVTTTDVPAMETDTNPELEGLVTPTPAGEVVVEAEKSKSSKKRIAKAPWAKLLSQFPQNPHLVMRGSVFTVGRRACDLCIRDHSMPNVLCELRQSEHGGPSVASLEIIGNGVLVQVNGKIYQRSTCVHLRGGDEIIFTTPGKHAYIFQPLKDENLAAPDRTSSLSLFEAQSAPLKGLHVETRARDSSSVDGTASLLASISKLQNVPFLPPTAKSVKRQQNSEVPVLPSSCDDFILDVDLNDADSNNDHAAIASMEKTVASTSCAANDDHDADGNGMDPFQEPEAGNIPDPAYEIRPILSLLGDPSEFDLRGSISKILVDERREVREMPKEYERPSASVLTRRQAHKDSLRGGILNPQDIEVSFENFPYFLSGTTKDVLMISTYAHIKYGKEYAEYASDLPTACPRILLSGPSGSEIYQEMLAKALAKQCGAKLMIVDSLLLPGGSTPKEADTTKESSRRERLSVLAKRAVQAAQAAVLQHKKPISSVEAGITGGSTLSSQAVRRQEVSTATSKSYTFKAGDRVRFLGPSTSSLASLRAPPRGPATGFQGKVLLAFEGNGSSKIGVRFDRSIPDGNDLGGLCEEDHGFFCTASSLRLESSSSDDADKLAINEIFEVAFNESERGSLILFLKDIEKSVSGNTDVYITLKSKLENLPENIVVIASQTQLDNRKEKSHPGGFLFTKFGSNQTALLDLAFPDTFGGRLQDRNTEMPKAVKQITRLFPNKVTIQLPEDEASLVDWKDKLERDTEILKAQANITSIRAVLSKNQLVCPDIEILCIKDQTLPSDSVEKVVGFAFNHHLMNCSEPTVKDNKLIISAESITYGLQLLHEIQNENKSTKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPGEHEAMRKMKNEFMINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAIANMTDGYSGSDLKNLCVTAAHLPIREILEKEKKERSVAQAENRAMPQLYSSTDVRPLNMNDFKTAHDQVCASVASDSSNMNELQQWNELYGEGGSRKKTSLSYFM", "length": 1218, "header": "tr|F4HZ81-1|F4HZ82_ARATH Computationally mapped isoform of AAA-type ATPase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZ82-1" }, "locus": { "chromosome": "1", "start_pos": 645092, "end_pos": 651907, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G02890.2", "url": "https://www.ensemblgenomes.org/id/AT1G02890.2" }, { "database": "Ensembl Peptide", "id": "AT1G02890.2", "url": "https://www.ensemblgenomes.org/id/AT1G02890.2" } ] } }, { "isoform_ac": "F4HZ82-1", "url": "https://www.uniprot.org/uniprotkb/F4HZ82/entry#F4HZ82-1", "sequence": { "sequence": "MVDTRRSSSASKRFCAATSSSSRPTKRSKAAAEPASSSSASEVPIDNQAPVSDPGSISGDPELRTSDPQSNDAERPVTTTDVPAMETDTNPELEGLVTPTPAGEVVVEAEKSKSSKKRIAKAPWAKLLSQFPQNPHLVMRGSVFTVGRRACDLCIRDHSMPNVLCELRQSEHGGPSVASLEIIGNGVLVQVNGKIYQRSTCVHLRGGDEIIFTTPGKHAYIFQPLKDENLAAPDRTSSLSLFEAQSAPLKGLHVETRARDSSSVDGTASLLASISKLQNVPFLPPTAKSVKRQQNSEVPVLPSSCDDFILDVDLNDADSNNDHAAIASMEKTVASTSCAANDDHDADGNGMDPFQEPEAGNIPDPAYEIRPILSLLGDPSEFDLRGSISKILVDERREVREMPKEYERPSASVLTRRQAHKDSLRGGILNPQDIEVSFENFPYFLSGTTKDVLMISTYAHIKYGKEYAEYASDLPTACPRILLSGPSGSEIYQEMLAKALAKQCGAKLMIVDSLLLPGGSTPKEADTTKESSRRERLSVLAKRAVQAAQAAVLQHKKPISSVEAGITGGSTLSSQAVRRQEVSTATSKSYTFKAGDRVRFLGPSTSSLASLRAPPRGPATGFQGKVLLAFEGNGSSKIGVRFDRSIPDGNDLGGLCEEDHGFFCTASSLRLESSSSDDADKLAINEIFEVAFNESERGSLILFLKDIEKSVSGNTDVYITLKSKLENLPENIVVIASQTQLDNRKEKSHPGGFLFTKFGSNQTALLDLAFPDTFGGRLQDRNTEMPKAVKQITRLFPNKVTIQLPEDEASLVDWKDKLERDTEILKAQANITSIRAVLSKNQLVCPDIEILCIKDQTLPSDSVEKVVGFAFNHHLMNCSEPTVKDNKLIISAESITYGLQLLHEIQNENKSTKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAIANMTDGYSGSDLKNLCVTAAHLPIREILEKEKKERSVAQAENRAMPQLYSSTDVRPLNMNDFKTAHDQVCASVASDSSNMNELQQWNELYGEGGSRKKTSLSYFM", "length": 1246, "header": "tr|F4HZ82-1|F4HZ82_ARATH Isoform 1 of AAA-type ATPase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZ82-1" }, "locus": { "chromosome": "1", "start_pos": 645084, "end_pos": 652001, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G02890.1", "url": "https://www.ensemblgenomes.org/id/AT1G02890.1" }, { "database": "Ensembl Peptide", "id": "AT1G02890.1", "url": "https://www.ensemblgenomes.org/id/AT1G02890.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 100, "start_aa": "Thr", "end_pos": 100, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr100", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": 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"id": "IPR006501", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006501", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035513", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035513", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G09370", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G09370", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNEVFAN", "url": "https://omabrowser.org/oma/group/CNEVFAN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR36710", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36710", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36710:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36710:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04043", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04043", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G09370", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G09370", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4HZH7", "url": "https://www.uniprot.org/uniprotkb/F4HZH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HZH7-1", "url": "https://www.uniprot.org/uniprotkb/F4HZH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKMHHILSIVLAIILASSVAEAFLDEKTQQRVNGICKQTMDTRFCSSLLIKNLNTFPASNKEIMNVTVSEAERFAANTYFFISTLLRNAGDERPDLQACAEAYAIVNSAFTKAVTFFKQAYYSKIVNIEKKVSMAVDICKTDFNVLGYQINPLIEKNRQTKILLSMEQIVSHMVSS", "length": 176, "header": "tr|F4HZH7-1|F4HZH7_ARATH Isoform 1 of Plant invertase/pectin methylesterase inhibitor superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZH7-1" }, "isoforms": [ { "isoform_ac": "F4HZH7-1", "url": "https://www.uniprot.org/uniprotkb/F4HZH7/entry#F4HZH7-1", "sequence": { "sequence": "MKMHHILSIVLAIILASSVAEAFLDEKTQQRVNGICKQTMDTRFCSSLLIKNLNTFPASNKEIMNVTVSEAERFAANTYFFISTLLRNAGDERPDLQACAEAYAIVNSAFTKAVTFFKQAYYSKIVNIEKKVSMAVDICKTDFNVLGYQINPLIEKNRQTKILLSMEQIVSHMVSS", "length": 176, "header": "tr|F4HZH7-1|F4HZH7_ARATH Isoform 1 of Plant invertase/pectin methylesterase inhibitor superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZH7-1" }, "locus": { "chromosome": "1", "start_pos": 3024877, "end_pos": 3025539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G09370.1", "url": "https://www.ensemblgenomes.org/id/AT1G09370.1" }, { "database": "Ensembl Peptide", "id": "AT1G09370.1", "url": "https://www.ensemblgenomes.org/id/AT1G09370.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HZH7", "url": "https://www.uniprot.org/uniprotkb/F4HZH7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HZH7", "url": 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"site_annotation": [ { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4HZH7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 176, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4HZH7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4HZH7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4HZH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZH7" }, { "id": "SM00856", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00856" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pectinesterase inhibitor", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 170, "start_aa": "Lys", "end_aa": "Val", 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4HZI0-1", "uniprot_ac": "F4HZI0", "uniprot_id": "F4HZI0_ARATH", "mass": { "chemical_mass": 37879.0, "monoisotopic_mass": 37879.0 }, "refseq": { "ac": "NP_683308", "name": "RING/FYVE/PHD zinc finger superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683308" }, "gene_names": [], "protein_names": [ { "name": "RING/FYVE/PHD zinc finger superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_683308", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683308" }, { "id": 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"https://www.uniprot.org/uniprotkb/F4HZI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HZI0-1", "url": "https://www.uniprot.org/uniprotkb/F4HZI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTLATPSPPCLSCSMFSHVRFCRNSRVVSTAAVVSPALSSSNAVNLEICVAATVLTPLTPLLGLYFGSQAHWQLNLFGEHIKGFVGIIFCPRRICPLLAMPKLHRDVCARNYLHFITRCGRSSCRWKLQDLGVNPGFKPCVRYIIHLRKQRTFFNTVLSHHWGCYTVEIEKPKYACMKSLRRMEDIVPRSSGFQLWWNVVELLLDQLWWRRHALKKLIDWESVEEDKGKDSIVAYILHLMKKKSGQIFIPPEEQISLQLMRDPVIVASGQTYERVCVEKWFCDGKLLPQYSEAAPTSFPDSQLLCYKSDCELVSAEWDHCIIFCPKYF", "length": 329, "header": "tr|F4HZI0-1|F4HZI0_ARATH Isoform 1 of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4HZI0-1" }, "isoforms": [ { "isoform_ac": "F4HZI0-1", "url": "https://www.uniprot.org/uniprotkb/F4HZI0/entry#F4HZI0-1", "sequence": { "sequence": "MRTLATPSPPCLSCSMFSHVRFCRNSRVVSTAAVVSPALSSSNAVNLEICVAATVLTPLTPLLGLYFGSQAHWQLNLFGEHIKGFVGIIFCPRRICPLLAMPKLHRDVCARNYLHFITRCGRSSCRWKLQDLGVNPGFKPCVRYIIHLRKQRTFFNTVLSHHWGCYTVEIEKPKYACMKSLRRMEDIVPRSSGFQLWWNVVELLLDQLWWRRHALKKLIDWESVEEDKGKDSIVAYILHLMKKKSGQIFIPPEEQISLQLMRDPVIVASGQTYERVCVEKWFCDGKLLPQYSEAAPTSFPDSQLLCYKSDCELVSAEWDHCIIFCPKYF", "length": 329, "header": "tr|F4HZI0-1|F4HZI0_ARATH Isoform 1 of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4HZI0-1" }, "locus": { "chromosome": "1", "start_pos": 5217719, "end_pos": 5220113, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G15165.1", "url": "https://www.ensemblgenomes.org/id/AT1G15165.1" }, { "database": "Ensembl Peptide", "id": "AT1G15165.1", "url": "https://www.ensemblgenomes.org/id/AT1G15165.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HZI0", "url": "https://www.uniprot.org/uniprotkb/F4HZI0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HZI0", "url": "https://www.uniprot.org/uniprotkb/F4HZI0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G15165", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G15165", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F4HZI0", "url": "https://www.uniprot.org/uniprotkb/F4HZI0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "F4HZI0", "url": "https://www.uniprot.org/uniprotkb/F4HZI0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4HZI0", "url": "https://www.uniprot.org/uniprotkb/F4HZI0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4HZI0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 329, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4HZI0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4HZI0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4HZI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZI0" }, { "id": "SM00504", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00504" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "U-box", "eco_id": "ECO_0000259", "start_pos": 256, "end_pos": 318, "start_aa": "Ile", "end_aa": "Trp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4HZJ6-1", "uniprot_ac": "F4HZJ6", "uniprot_id": "F4HZJ6_ARATH", "mass": { "chemical_mass": 115388.0, "monoisotopic_mass": 115388.0 }, "refseq": { "ac": "NP_001154343", "name": "phox (PX) domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154343" }, "gene_names": [ { "name": "SNX3", "type": "recommended", "evidence": [ { "id": "F4HZJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6" } ] }, { "name": "F9L1.19", "type": "synonym", "evidence": [ { "id": "NP_001154343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154343" }, { "id": "F4HZJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6" } ] }, { "name": "F9L1_19", "type": "synonym", "evidence": [ { "id": "NP_001154343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154343" }, { "id": "F4HZJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6" } ] } ], "protein_names": [ { "name": "Phox (PX) domain-containing protein", "type": "synonym", "evidence": [ { "id": "F4HZJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6/entry#names_and_taxonomy" } ] }, { "name": "phox (PX) domain-containing protein", "type": "synonym", "evidence": [ { "id": "NP_001154343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154343" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HZJ6", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "SNX3", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6", "locus": {} } ], "crossref": [ { "id": "F4HZJ6", "url": "https://alphafold.ebi.ac.uk/entry/F4HZJ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G15240", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G15240", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd06872", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06872", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "838091", "url": "https://www.ncbi.nlm.nih.gov/gene/838091", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G15240", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G15240", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ENFDNHS", "url": "https://omabrowser.org/oma/group/ENFDNHS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22999", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22999", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22999:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22999:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02194", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02194", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154343", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154343", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G15240", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G15240", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4HZJ6", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HZJ6-1", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HZJ7", "url": "https://www.uniprot.org/uniprotkb/F4HZJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HZJ7-1", "url": "https://www.uniprot.org/uniprotkb/F4HZJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTQKQVVTIRDLVDEAKKRIVIVVICVVGLSYLMSLTSSSVLVNLTPAVLLIILFRYYTLDSEMKRKAAAYTNKPSSSLNAPTLNKTPELPKAAPRSDWRSKVNSQVVEDAIDHFTRHLISEWVLDLWYSRITPDKQGPEELVFIINDVLGELSRRFRNVNLIDLLTRDLIDIICRRVELFRECQAKIERQQRRSLSFEDRDSELRRVMASEDKLHPALFSPESEHKVLQHIVNSLILVTFRPEDLHCAFFHYTVRELFACCVIRPVLNLANPRFINERIEAAVMSRIKTTIRSSAAEEASQSEDLSNVSPDHFSRYMDPSVTGVELVQLKNEQQKNSKKKSATDKQHVKELSKDPLLSMDTRSSRSWNSFPSTSKIGDGSKDPQGHRGGEGWGDVLDMMSQRKTETLAPEHLESVWAKGRNYKKKEGGKVDERVPPRWSSKAGDCNENTVNARESSQRKVVNTDSHLSSYSSAEEDEEQTKSSHSYTSEDEETVTGLNSPGTRVWDGRTKKNLGVSRIHHPLENSGRSLKKTSKGHERYQQVPGHQSGRKRSRISGHIIDDDDSDDSEDGSLTRSYSGMSATSSTSYVSAAESDLPNAPKSSLLVDSFAKLRCEVLGANIVKGSSKMFAVYSVAVTDESNHSWSIKRRFRHFEELHRRLKVFPEYKLHLPPKHFLSTGVDIPVIQERCVLLDEYIKKLLQLQRISGSIEVWDFLSVDSQTYAFSSSFSIIETLTVKPVNKTSTVATNIASMTQAAPGPLPRRENLSSENGISGQNMRNNVMVDDVKSKVKNLGNDHVKTPDVDVRNRKENGGLKVGTQHADDVACAGLPTEWVPPKLTLPLLDLVDVVFQLQEGGWIRRKAFWVAKQILQLGMGDALDDWVLEKICLLRRGTVVASGIQRVEQILWPDGVFMTKHPKRQQQSSISEEEQKQEAERRAKFVHELMIEKAPATIVSLIGQKEYEQCAEDLYFFLQSSVCLKQLAFDILELLLLSAFPEMEQAFKKLHYEKHLFGQYTPPN", "length": 1020, "header": "tr|F4HZJ6-1|F4HZJ6_ARATH Isoform 1 of Phox (PX) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=SNX3 PE=1 SV=1 CANONICAL=F4HZJ6-1" }, "isoforms": [ { "isoform_ac": "F4HZJ6-1", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6/entry#F4HZJ6-1", "sequence": { "sequence": "MSTQKQVVTIRDLVDEAKKRIVIVVICVVGLSYLMSLTSSSVLVNLTPAVLLIILFRYYTLDSEMKRKAAAYTNKPSSSLNAPTLNKTPELPKAAPRSDWRSKVNSQVVEDAIDHFTRHLISEWVLDLWYSRITPDKQGPEELVFIINDVLGELSRRFRNVNLIDLLTRDLIDIICRRVELFRECQAKIERQQRRSLSFEDRDSELRRVMASEDKLHPALFSPESEHKVLQHIVNSLILVTFRPEDLHCAFFHYTVRELFACCVIRPVLNLANPRFINERIEAAVMSRIKTTIRSSAAEEASQSEDLSNVSPDHFSRYMDPSVTGVELVQLKNEQQKNSKKKSATDKQHVKELSKDPLLSMDTRSSRSWNSFPSTSKIGDGSKDPQGHRGGEGWGDVLDMMSQRKTETLAPEHLESVWAKGRNYKKKEGGKVDERVPPRWSSKAGDCNENTVNARESSQRKVVNTDSHLSSYSSAEEDEEQTKSSHSYTSEDEETVTGLNSPGTRVWDGRTKKNLGVSRIHHPLENSGRSLKKTSKGHERYQQVPGHQSGRKRSRISGHIIDDDDSDDSEDGSLTRSYSGMSATSSTSYVSAAESDLPNAPKSSLLVDSFAKLRCEVLGANIVKGSSKMFAVYSVAVTDESNHSWSIKRRFRHFEELHRRLKVFPEYKLHLPPKHFLSTGVDIPVIQERCVLLDEYIKKLLQLQRISGSIEVWDFLSVDSQTYAFSSSFSIIETLTVKPVNKTSTVATNIASMTQAAPGPLPRRENLSSENGISGQNMRNNVMVDDVKSKVKNLGNDHVKTPDVDVRNRKENGGLKVGTQHADDVACAGLPTEWVPPKLTLPLLDLVDVVFQLQEGGWIRRKAFWVAKQILQLGMGDALDDWVLEKICLLRRGTVVASGIQRVEQILWPDGVFMTKHPKRQQQSSISEEEQKQEAERRAKFVHELMIEKAPATIVSLIGQKEYEQCAEDLYFFLQSSVCLKQLAFDILELLLLSAFPEMEQAFKKLHYEKHLFGQYTPPN", "length": 1020, "header": "tr|F4HZJ6-1|F4HZJ6_ARATH Isoform 1 of Phox (PX) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=SNX3 PE=1 SV=1 CANONICAL=F4HZJ6-1" }, "locus": { "chromosome": "1", "start_pos": 5243383, "end_pos": 5248684, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G15240.2", "url": "https://www.ensemblgenomes.org/id/AT1G15240.2" }, { "database": "Ensembl Peptide", "id": "AT1G15240.2", "url": "https://www.ensemblgenomes.org/id/AT1G15240.2" } ] } }, { "isoform_ac": "F4HZJ7-1", "url": "https://www.uniprot.org/uniprotkb/F4HZJ6/entry#F4HZJ7-1", "sequence": { "sequence": "MSTQKQVVTIRDLVDEAKKRIVIVVICVVGLSYLMSLTSSSVLVNLTPAVLLIILFRYYTLDSEMKRKAAAYTNKPSSSLNAPTLNKTPELPKAAPRSDWRSKVNSQVVEDAIDHFTRHLISEWVLDLWYSRITPDKQGPEELVFIINDVLGELSRRFRNVNLIDLLTRDLIDIICRRVELFRECQAKIERQQRRSLSFEDRDSELRRVMASEDKLHPALFSPESEHKVLQHIVNSLILVTFRPEDLHCAFFHYTVRELFACCVIRPVLNLANPRFINERIEAAVMSRIKTTIRSSAAEEASQSEDLSNVSPDHFSRYMDPSVTGVELVQLKNEQQKNSKKKSATDKQHVKELSKDPLLSMDTRSSRSWNSFPSTSKIGDGSKDPQGHRGGEGWGDVLDMMSQRKTETLAPEHLESVWAKGRNYKKKEGGKVDERVPPRWSSKAGDCNENTVNARESSQRKVVNTDSHLSSYSSAEEDEEQTKSSHSYTSEDEETVTGLNSPGTRVWDGRTKKNLGVSRIHHPLENSGRSLKKTSKGHERYQQVPGHQSGRKRSRISGHIIDDDDSDDSEDGSLTRSYSGMSATSSTSYVSAAESDLPNAPKSSLLVDSFAKLRCEVLGANIVKGSSKMFAVYSVAVTDESNHSWSIKRRFRHFEELHRRLKVFPEYKLHLPPKHFLSTGVDIPVIQERCVLLDEYIKKLLQLQRISGSIEVWDFLSVDSQTYAFSSSFSIIETLTVKPVNKTSTVATNIASMTQAAPGPLPRRENLSSENGISGQNMRNNVMVDDVKSKVKNLGNDHVKTPDVDVRNRKENGGLKVGTQHADDVACAGLPTEWVPPKLTLPLLDLVDVVFQLQEGGWIRRKAFWVAKQILQLGMGDALDDWVLEKICLLRRGTVVASGIQRVEQILWPDGVFMTKHPKRQQQSSISEEEQKQEAERRAKFVHELMIEKAPATIVSLIGQKEYEQCAEDLYFFLQVNIPLDFRFVRCLHAFDDFIVKIILVSVISVFEAIGV", "length": 1012, "header": "tr|F4HZJ7-1|F4HZJ7_ARATH Computationally mapped isoform of Phox (PX) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=SNX3 PE=1 SV=1 CANONICAL=F4HZJ6-1" }, "locus": { "chromosome": "1", "start_pos": 5243450, "end_pos": 5248604, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G15240.3", "url": "https://www.ensemblgenomes.org/id/AT1G15240.3" }, { "database": "Ensembl Peptide", "id": "AT1G15240.3", "url": "https://www.ensemblgenomes.org/id/AT1G15240.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar 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"database": "Ensembl Peptide", "id": "AT1G21864.1", "url": "https://www.ensemblgenomes.org/id/AT1G21864.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4HZS8-1", "uniprot_ac": "F4HZS8", "uniprot_id": "F4HZS8_ARATH", "mass": { "chemical_mass": 228954.0, "monoisotopic_mass": 228954.0 }, "refseq": {}, "gene_names": [ { "name": "F2E2.13", "type": "synonym", "evidence": [ { "id": "F4HZS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZS8" } ] }, { "name": "F2E2_13", "type": "synonym", "evidence": [ { "id": "F4HZS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZS8" } ] } ], "protein_names": [ { "name": "Sporulation-specific protein", "type": "synonym", "evidence": [ { "id": "F4HZS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZS8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4HZS8", "url": "https://www.uniprot.org/uniprotkb/F4HZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4HZS8", "locus": {} } ], "crossref": [ { "id": "AT1G22060", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G22060", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "838811", "url": "https://www.ncbi.nlm.nih.gov/gene/838811", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G22060", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G22060", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TEASYMR", "url": "https://omabrowser.org/oma/group/TEASYMR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34452", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34452", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34452:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34452:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G22060", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G22060", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4HZS8", "url": "https://www.uniprot.org/uniprotkb/F4HZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4HZS8-1", "url": "https://www.uniprot.org/uniprotkb/F4HZS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRLAKWKLEKAKVKVVFRLQFHATHVPQAGWDKLFISFIPADSVKATAKTTKALVRNGTCKWGDPIYETTRLLQDTRTKQFDEKLYKIVVAMGTSRSSILGEAMINLAEYADALKPFAVILPLQGCDPGAILHVTIQLLTSKTGFREFEQQREISERGPSTTPDHSSPDESSRCRISPSDETLSHVDKTNIRGSFKEKFRDNSLVEETVGLNDLDSGLGFDVSSNTSGSLNAEKHDISSINEVDSLKSVVSGDLSGLAQSPQKEKDSLGWQHGWGSDYLGKNSDLGNAIEDNNKLKGFLEDMESSINEIKIEVSSLQCHADDIGSKAQDFSQILISEIGSGDHLVREVSVLKSECSKLKEEMERLRNVKSHVLFNSKDQDNVPHSLQLRWLQGLLVVEDNIREIQNKVCYGYHDRDLRLFLSDFESLLGVLQDFKTQIEQPISHFSTVPSEKIIMTDSKERGLSKAKHFVSGSEVDTDIYQPELDPLQYLGMPDLTSREPNSADSVSAMRDKILELVRGLDESKAERDSLTKKMDQMECYYESLVQELEETQRQLLVELQSLRTEHSTCLYSISGAKAEMETLRHDMNEQTLRFSEEKKTLDSFNEELDKRAMAAEAALKRARLNYSIAVNHLQKDLELLSSQVVSMFETNENLIKQAFPEPPQSFHECIQSTDDSISEKQDTRDVKLIQFQNEKKGMKERPLKGDIILLEDMKRSLHVQESLYQKVEEELYEMHSRNLYLEVFSNILRETFLEASVDIRIMKAKIDELGWQLELSTEAKEILKQRLDITLDEVCSLKEEKTTCIAKWNAVALQNQSLEANLQNITHENLILLQKIDELESVVLESKSWKTNYETCICEKKELAELMEKEAVEKAHYRTRLATVQAEFDAVRGKFDDLATANGNLQQNLSSLTDKLINTLGCYNEKLVSLPQWEGVDLDFESHDLTEQLDKFLCKICEKCFVLISENNGLMKEKSMTESYLRAAESDVMELKQMHENDVQCMVTKLEASTALLRRLQLETESVMDKMKVITEDEQNYESRHLDLLSRLDHFENEMHLLVSKNEGLGQEISELSSVAVEHGRTKLLVEELAEEKKRVLVSLQDKSQETLGLVRELENLKKTFDHELRLERNLRQELEIKMQDLTSEVIAKSSKLMSFDEQSSELVRLKQMVSDLELEKATHTHRLTRYETSLRSLTRDSSYISDLESQILEMMEISVAADIQIVFTRTEWETYADKLHKDHFEVLTAFNDSRNVGAQHMNANIKLLADLDSLKSELKIERNLRNNLDRRVEELTSELDEKHLLLENFDLQKSQVELLEKMVAELESEKSFQRLEYVRNAHRESSFIEELFQCLMAADVQLIFTKIQSDICINEFAEQLSCCSNSHLEFQKKYTDVESALNHCLVNETRYMDENNQLLINLEVLKSELESSMAKSRALADRNDEMSAELEEHATRDENAERSYSERSLCAPEVEQLKSLLFGYEEEIENLTVLKAEAEITVEILKDKLTGLCGKGASELETLKNRCSDLTQKLSEQILKTEEFKSMSNHLKELKDNAEAECNRAREKADYKAPLTPQQESLRIIFIKEQYDTKLQELQYQLTMSKKHGEEILMKLQDAIDENEARKKAESSQLKRSKELEGKILELEADRQSVIYDKREKTTAYDMMKAELDCSLLSLECCKEEKQKLEAILQQCKEQSLKMSKELESRRGLVQRCSSQKNIEMEENDRLNSEVSELADKNTIAVSSGDSVNNGQREVACIDPTVRIISPRSIIQGTIQSSSVNGNRDQLPSGEAMALDKREESLALINDKFRAETLRSSMDHLNDELERMKNENLLEPQDDNDSDTRFPGLEQELMQLRQAKEELQSIFPLSQENFSCGNALERVLALEIELAEALRGKKKSTTHFQSSFLKQHTDDEAIFQSFRDINNLIEEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGERQKLMMTLKNVRASKKAMLLNRSSSATLGEH", "length": 1999, "header": "tr|F4HZS8-1|F4HZS8_ARATH Isoform 1 of Sporulation-specific protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZS8-1" }, "isoforms": [ { "isoform_ac": "F4HZS8-1", "url": "https://www.uniprot.org/uniprotkb/F4HZS8/entry#F4HZS8-1", "sequence": { "sequence": "MSRLAKWKLEKAKVKVVFRLQFHATHVPQAGWDKLFISFIPADSVKATAKTTKALVRNGTCKWGDPIYETTRLLQDTRTKQFDEKLYKIVVAMGTSRSSILGEAMINLAEYADALKPFAVILPLQGCDPGAILHVTIQLLTSKTGFREFEQQREISERGPSTTPDHSSPDESSRCRISPSDETLSHVDKTNIRGSFKEKFRDNSLVEETVGLNDLDSGLGFDVSSNTSGSLNAEKHDISSINEVDSLKSVVSGDLSGLAQSPQKEKDSLGWQHGWGSDYLGKNSDLGNAIEDNNKLKGFLEDMESSINEIKIEVSSLQCHADDIGSKAQDFSQILISEIGSGDHLVREVSVLKSECSKLKEEMERLRNVKSHVLFNSKDQDNVPHSLQLRWLQGLLVVEDNIREIQNKVCYGYHDRDLRLFLSDFESLLGVLQDFKTQIEQPISHFSTVPSEKIIMTDSKERGLSKAKHFVSGSEVDTDIYQPELDPLQYLGMPDLTSREPNSADSVSAMRDKILELVRGLDESKAERDSLTKKMDQMECYYESLVQELEETQRQLLVELQSLRTEHSTCLYSISGAKAEMETLRHDMNEQTLRFSEEKKTLDSFNEELDKRAMAAEAALKRARLNYSIAVNHLQKDLELLSSQVVSMFETNENLIKQAFPEPPQSFHECIQSTDDSISEKQDTRDVKLIQFQNEKKGMKERPLKGDIILLEDMKRSLHVQESLYQKVEEELYEMHSRNLYLEVFSNILRETFLEASVDIRIMKAKIDELGWQLELSTEAKEILKQRLDITLDEVCSLKEEKTTCIAKWNAVALQNQSLEANLQNITHENLILLQKIDELESVVLESKSWKTNYETCICEKKELAELMEKEAVEKAHYRTRLATVQAEFDAVRGKFDDLATANGNLQQNLSSLTDKLINTLGCYNEKLVSLPQWEGVDLDFESHDLTEQLDKFLCKICEKCFVLISENNGLMKEKSMTESYLRAAESDVMELKQMHENDVQCMVTKLEASTALLRRLQLETESVMDKMKVITEDEQNYESRHLDLLSRLDHFENEMHLLVSKNEGLGQEISELSSVAVEHGRTKLLVEELAEEKKRVLVSLQDKSQETLGLVRELENLKKTFDHELRLERNLRQELEIKMQDLTSEVIAKSSKLMSFDEQSSELVRLKQMVSDLELEKATHTHRLTRYETSLRSLTRDSSYISDLESQILEMMEISVAADIQIVFTRTEWETYADKLHKDHFEVLTAFNDSRNVGAQHMNANIKLLADLDSLKSELKIERNLRNNLDRRVEELTSELDEKHLLLENFDLQKSQVELLEKMVAELESEKSFQRLEYVRNAHRESSFIEELFQCLMAADVQLIFTKIQSDICINEFAEQLSCCSNSHLEFQKKYTDVESALNHCLVNETRYMDENNQLLINLEVLKSELESSMAKSRALADRNDEMSAELEEHATRDENAERSYSERSLCAPEVEQLKSLLFGYEEEIENLTVLKAEAEITVEILKDKLTGLCGKGASELETLKNRCSDLTQKLSEQILKTEEFKSMSNHLKELKDNAEAECNRAREKADYKAPLTPQQESLRIIFIKEQYDTKLQELQYQLTMSKKHGEEILMKLQDAIDENEARKKAESSQLKRSKELEGKILELEADRQSVIYDKREKTTAYDMMKAELDCSLLSLECCKEEKQKLEAILQQCKEQSLKMSKELESRRGLVQRCSSQKNIEMEENDRLNSEVSELADKNTIAVSSGDSVNNGQREVACIDPTVRIISPRSIIQGTIQSSSVNGNRDQLPSGEAMALDKREESLALINDKFRAETLRSSMDHLNDELERMKNENLLEPQDDNDSDTRFPGLEQELMQLRQAKEELQSIFPLSQENFSCGNALERVLALEIELAEALRGKKKSTTHFQSSFLKQHTDDEAIFQSFRDINNLIEEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGERQKLMMTLKNVRASKKAMLLNRSSSATLGEH", "length": 1999, "header": "tr|F4HZS8-1|F4HZS8_ARATH Isoform 1 of Sporulation-specific protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZS8-1" }, "locus": { "chromosome": "1", "start_pos": 7773063, "end_pos": 7781539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G22060.1", "url": "https://www.ensemblgenomes.org/id/AT1G22060.1" }, { "database": "Ensembl Peptide", "id": "AT1G22060.1", "url": "https://www.ensemblgenomes.org/id/AT1G22060.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1409, "end_pos": 1409, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr1409" }, { "start_pos": 1425, "end_pos": 1425, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser1425" }, { "start_pos": 1429, "end_pos": 1429, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser1429" }, { "start_pos": 1574, "end_pos": 1574, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr1574" }, { "start_pos": 167, "end_pos": 167, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser167" }, { "start_pos": 168, "end_pos": 168, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser168" }, { "start_pos": 172, "end_pos": 172, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser172" }, { "start_pos": 173, "end_pos": 173, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser173" }, { "start_pos": 178, "end_pos": 178, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser178" }, { "start_pos": 1819, "end_pos": 1819, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1819" }, { "start_pos": 195, "end_pos": 195, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZS8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser195" }, { "start_pos": 1993, "end_pos": 1993, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", 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P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HZT2", "url": "https://www.uniprot.org/uniprotkb/F4HZT2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G22080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G22080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4HZT2", "url": "https://www.uniprot.org/uniprotkb/F4HZT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], 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"MARLTLFLSFLSLALVSVVNCRVLSSVSEDNNSSILVSDGVQDRSSNDFLSLNPPNLSESACVHVYGFLPCADNIEGYVFQVFSFGCLLIIGEYFLSKGRSKLFVIFEVGFFGGIIFPLLTMFPRIALILSTGLIGSREIANSMTGNNVAVTVGYSVFALTMQWGACVVFGLSGLRSDDQSITCDISSPRRQVKKSINLLKNLAGASIRADPKNKKAAGIMLLTLLPFVLVTFSETFHIKSWDDNMVLVTLIFSGSATVLYFVYLYFDKADQVKSLEYAKFELMSEVHKHLQNFSPQSLIRNGQLCQESLKSLFKKFDVNKDGKIQVSELKDLTVDFGVLGRVKCDINELATTLLADFDSNRDGEIDETEFAIGIEKWLKQYKFSFNGTESQGEDIAEDDGVLKVEQLLKGCLFTKLLTKRTLKAVIEVIIGITIVSFLAMPFMMNIELLSVSAGVPSFYVVFAVIPLARNLKNALSAHFCRKKEKAKITSDTFSEIYRDVTLNNLLGITIILAIVYIRGLTWDYSTEVLIIVIVGLIIGVPAYVRSTYPFWICVLAFALYFFSLILIYLHSKSTFNE", "length": 578, "header": "tr|F4HZU9-1|F4HZU9_ARATH Isoform 1 of Calcium-binding EF-hand family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZU9-1" }, "isoforms": [ { "isoform_ac": "F4HZU9-1", "url": "https://www.uniprot.org/uniprotkb/F4HZU9/entry#F4HZU9-1", "sequence": { "sequence": "MARLTLFLSFLSLALVSVVNCRVLSSVSEDNNSSILVSDGVQDRSSNDFLSLNPPNLSESACVHVYGFLPCADNIEGYVFQVFSFGCLLIIGEYFLSKGRSKLFVIFEVGFFGGIIFPLLTMFPRIALILSTGLIGSREIANSMTGNNVAVTVGYSVFALTMQWGACVVFGLSGLRSDDQSITCDISSPRRQVKKSINLLKNLAGASIRADPKNKKAAGIMLLTLLPFVLVTFSETFHIKSWDDNMVLVTLIFSGSATVLYFVYLYFDKADQVKSLEYAKFELMSEVHKHLQNFSPQSLIRNGQLCQESLKSLFKKFDVNKDGKIQVSELKDLTVDFGVLGRVKCDINELATTLLADFDSNRDGEIDETEFAIGIEKWLKQYKFSFNGTESQGEDIAEDDGVLKVEQLLKGCLFTKLLTKRTLKAVIEVIIGITIVSFLAMPFMMNIELLSVSAGVPSFYVVFAVIPLARNLKNALSAHFCRKKEKAKITSDTFSEIYRDVTLNNLLGITIILAIVYIRGLTWDYSTEVLIIVIVGLIIGVPAYVRSTYPFWICVLAFALYFFSLILIYLHSKSTFNE", "length": 578, "header": "tr|F4HZU9-1|F4HZU9_ARATH Isoform 1 of Calcium-binding EF-hand family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZU9-1" }, "locus": { "chromosome": "1", "start_pos": 10124286, "end_pos": 10127098, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G29025.1", "url": "https://www.ensemblgenomes.org/id/AT1G29025.1" }, { "database": "Ensembl Peptide", "id": "AT1G29025.1", "url": "https://www.ensemblgenomes.org/id/AT1G29025.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 152, "start_aa": "Thr", "end_pos": 152, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr152", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 188, "end_pos": 188, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZU9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZU9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser188" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HZU9", "url": "https://www.uniprot.org/uniprotkb/F4HZU9" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4HZU9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZU9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4HZU9", "url": "https://www.uniprot.org/uniprotkb/F4HZU9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G29025", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G29025", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "monoatomic cation transmembrane transporter activity", "id": "GO:0008324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008324", "evidence": [ { "database": "UniProtKB", "id": "F4HZU9", "url": "https://www.uniprot.org/uniprotkb/F4HZU9" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F4HZU9", "url": "https://www.uniprot.org/uniprotkb/F4HZU9" } ], "pmid": "" }, { "name": "antiporter activity", "id": "GO:0015297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015297", "evidence": [ { "database": "UniProtKB", "id": "F4HZU9", "url": "https://www.uniprot.org/uniprotkb/F4HZU9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4HZU9", "url": "https://www.uniprot.org/uniprotkb/F4HZU9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "calcium ion transmembrane transport", "id": "GO:0070588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070588", "evidence": [ { "database": "UniProtKB", "id": "F4HZU9", "url": "https://www.uniprot.org/uniprotkb/F4HZU9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4HZU9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 578, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4HZU9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4HZU9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4HZU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4HZU9" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 305, "end_pos": 340, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 152 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 188 ], "sequon_annotation_sites": [ { "start_pos": 293, "end_pos": 295 }, { "start_pos": 31, "end_pos": 33 }, { "start_pos": 32, "end_pos": 34 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q9LP50", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LP50" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LP50", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LP50" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": 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action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9LP50", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LP50" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": 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"length": 1405, "header": "tr|F4HZZ6-1|F4HZZ6_ARATH Isoform 1 of Erythroid differentiation factor-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4HZZ6-1" }, "locus": { "chromosome": "1", "start_pos": 13192608, "end_pos": 13198142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G35660.1", "url": "https://www.ensemblgenomes.org/id/AT1G35660.1" }, { "database": "Ensembl Peptide", "id": "AT1G35660.1", "url": "https://www.ensemblgenomes.org/id/AT1G35660.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 849, "end_pos": 849, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4HZZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZZ6" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr849" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4HZZ6", "url": "https://www.uniprot.org/uniprotkb/F4HZZ6" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4HZZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4HZZ6" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": 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A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "O80531", "url": "https://www.uniprot.org/uniprotkb/O80531" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "O80531", "url": "https://www.uniprot.org/uniprotkb/O80531" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G09480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G09480", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "alcohol dehydrogenase (NAD+) activity", "id": "GO:0004022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004022", "evidence": [ { "database": "UniProtKB", "id": "F4I0Z5", "url": "https://www.uniprot.org/uniprotkb/F4I0Z5" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor", "id": "GO:0016616", "url": 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"https://www.uniprot.org/uniprotkb/F4I1B7/entry#F4I1B7-1", "sequence": { "sequence": "MENEQSTHVHFASLSSSSERYNETFEEIKKAMKKSVQLKAELSAKERNLVSVGYKNVISARRASLEILSSIVQKEESKGNEENVKKLKNYRNKVEDELAKICNDILSVINKQLIPSSTTVDSSVLFYNMLADFSSNAESKEATDQSLDAYKRLVWYQQFQLYMTLNWTSVFLNSPESAYQLAKQAFDDAINEFDNLTEREEVIFLFPYLPPLMIDR", "length": 216, "header": "tr|F4I1B7-1|F4I1B7_ARATH Isoform 1 of 14-3-3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I1B7-1" }, "locus": { "chromosome": "1", "start_pos": 7876640, "end_pos": 7877962, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G22290.2", "url": "https://www.ensemblgenomes.org/id/AT1G22290.2" }, { "database": "Ensembl Peptide", "id": "AT1G22290.2", "url": "https://www.ensemblgenomes.org/id/AT1G22290.2" } ] } }, { "isoform_ac": "F4I1B8-1", "url": "https://www.uniprot.org/uniprotkb/F4I1B7/entry#F4I1B8-1", "sequence": { "sequence": "MENEQSTHVHFASLSSSSERYNETFEEIKKAMKKSVQLKAELSAKERNLVSVGYKNVISARRASLEILSSIVQKEESKGNEENVKKLKNYRNKVEDELAKICNDILSVINKQLIPSSTTVDSSVLFYNMLADFSSNAESKEATDQSLDAYKRLVWYQQFQLYMTLNWTSVFLNSPESAYQLAKQAFDDAINEFDSK", "length": 196, "header": "tr|F4I1B8-1|F4I1B8_ARATH Computationally mapped isoform of 14-3-3 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I1B7-1" }, "locus": { "chromosome": "1", "start_pos": 7876966, "end_pos": 7877915, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G22290.1", "url": "https://www.ensemblgenomes.org/id/AT1G22290.1" }, { "database": "Ensembl Peptide", "id": "AT1G22290.1", "url": "https://www.ensemblgenomes.org/id/AT1G22290.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, 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"reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I1B7", "url": "https://www.uniprot.org/uniprotkb/F4I1B7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G22290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G22290", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I1G1-1", "url": "https://www.uniprot.org/uniprotkb/F4I1G1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSKVGGGARKGIQDIPSGSRKIVQSLTEIVNSPEAEIYAMLKECNMDPNETVSRLLSQDPFHEVKSKKEKKKETRDISDSRPRGANNTYNRGARGGSARYAGRSGSTHFSSTDSGNFQGKSTNKKESGTQGYTSSWSSASGVANTYQTPHSEPIAMENKLPPVTLGDGISSSKSASGHQTAWFGAPGQRSMAEVVKMGRPQNKTTKQNVNVGSEINHEHEVNANQQAPVKDEWPSIEKPLAPSTSSLSVAPAESEVRNGLADFQSDRGDQYLKDRLENIHIAESGPSESRGVDHVQADSVQEDESVVSSEIDDNPYQTQSHPVEHHKDEDDVSSGSASFQQLDSHDQEVSHEEDRPAVVIPNHLLIHTEECAQLSFGSFGGFGSRPLSNSVEATSDVAPQIEHSDARNTEFYGDEHLGSTTNGNMVHTPATGNYDDSLETRREVLKQENSEGAQEHQYTFTQSEQGYAYENAKQQQMNSAYDASHTNSQNQMHNLDSLSNVMQGYSHSVPNTLLAQTAQNARELDFQYSPFSAQQSMQSRTSNNASSLGGQSISMPEALRGSGIPATQPTQQTLPGANIATGPALPQQLPMHYSQPTLPLTHYANMIGYPLMPQNYPYMPSAFQQTFAGNSAYHQQLAALLPQYKTNVSPGNLPQSATAPASAYGFGNSTNVGSAGNFPLNQQSATTGTTLGYEDVLSSQYKENHLLALQQQQQQQQHQQQNENSAMWHQGHGSRTMSGVPTNTYYNLQAQQQLQLQHQQQQQQAQQAAGGYRQAQQQQHYGSHGYPNYYQSQTEMSLERQQQNPRDGAGSQAGQPSNQSQQQLWQNSY", "length": 831, "header": "tr|F4I1G1-1|F4I1G1_ARATH Isoform 1 of RNA polymerase II degradation factor-like protein (DUF1296) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I1G1-1" }, "isoforms": [ { "isoform_ac": "F4I1G1-1", "url": "https://www.uniprot.org/uniprotkb/F4I1G1/entry#F4I1G1-1", "sequence": { "sequence": "MSSSKVGGGARKGIQDIPSGSRKIVQSLTEIVNSPEAEIYAMLKECNMDPNETVSRLLSQDPFHEVKSKKEKKKETRDISDSRPRGANNTYNRGARGGSARYAGRSGSTHFSSTDSGNFQGKSTNKKESGTQGYTSSWSSASGVANTYQTPHSEPIAMENKLPPVTLGDGISSSKSASGHQTAWFGAPGQRSMAEVVKMGRPQNKTTKQNVNVGSEINHEHEVNANQQAPVKDEWPSIEKPLAPSTSSLSVAPAESEVRNGLADFQSDRGDQYLKDRLENIHIAESGPSESRGVDHVQADSVQEDESVVSSEIDDNPYQTQSHPVEHHKDEDDVSSGSASFQQLDSHDQEVSHEEDRPAVVIPNHLLIHTEECAQLSFGSFGGFGSRPLSNSVEATSDVAPQIEHSDARNTEFYGDEHLGSTTNGNMVHTPATGNYDDSLETRREVLKQENSEGAQEHQYTFTQSEQGYAYENAKQQQMNSAYDASHTNSQNQMHNLDSLSNVMQGYSHSVPNTLLAQTAQNARELDFQYSPFSAQQSMQSRTSNNASSLGGQSISMPEALRGSGIPATQPTQQTLPGANIATGPALPQQLPMHYSQPTLPLTHYANMIGYPLMPQNYPYMPSAFQQTFAGNSAYHQQLAALLPQYKTNVSPGNLPQSATAPASAYGFGNSTNVGSAGNFPLNQQSATTGTTLGYEDVLSSQYKENHLLALQQQQQQQQHQQQNENSAMWHQGHGSRTMSGVPTNTYYNLQAQQQLQLQHQQQQQQAQQAAGGYRQAQQQQHYGSHGYPNYYQSQTEMSLERQQQNPRDGAGSQAGQPSNQSQQQLWQNSY", "length": 831, "header": "tr|F4I1G1-1|F4I1G1_ARATH Isoform 1 of RNA polymerase II degradation factor-like protein (DUF1296) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I1G1-1" }, "locus": { "chromosome": "1", "start_pos": 10268421, "end_pos": 10273821, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G29350.1", "url": "https://www.ensemblgenomes.org/id/AT1G29350.1" }, { "database": "Ensembl Peptide", "id": "AT1G29350.1", "url": "https://www.ensemblgenomes.org/id/AT1G29350.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 166, "start_aa": "Thr", "end_pos": 166, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr166", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 452, "start_aa": "Ser", "end_pos": 452, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser452", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 461, "start_aa": "Thr", "end_pos": 461, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr461", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 463, "start_aa": "Thr", "end_pos": 463, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr463", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 465, "start_aa": "Ser", "end_pos": 465, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser465", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 531, "start_aa": "Ser", "end_pos": 531, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser531", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 534, "start_aa": "Ser", "end_pos": 534, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser534", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 543, "start_aa": "Thr", "end_pos": 543, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr543", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 544, "start_aa": "Ser", "end_pos": 544, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser544", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 548, "start_aa": "Ser", "end_pos": 548, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser548", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 549, "start_aa": "Ser", "end_pos": 549, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser549", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 554, "start_aa": "Ser", "end_pos": 554, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser554", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 556, "start_aa": "Ser", "end_pos": 556, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser556", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4I1G1" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4I1G1", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F4I1G1" } ] } ], "phosphorylation": [ { "start_pos": 106, "end_pos": 106, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser106" }, { "start_pos": 108, "end_pos": 108, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "16270910", "url": "https://glygen.org/publication/PubMed/16270910" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser108" }, { "start_pos": 113, "end_pos": 113, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser113" }, { "start_pos": 116, "end_pos": 116, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser116" }, { "start_pos": 176, "end_pos": 176, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser176" }, { "start_pos": 19, "end_pos": 19, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser19" }, { "start_pos": 267, "end_pos": 267, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser267" }, { "start_pos": 289, "end_pos": 289, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser289" }, { "start_pos": 396, "end_pos": 396, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr396" }, { "start_pos": 531, "end_pos": 531, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser531" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_reported_with_glycan" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I1G1", "url": "https://www.uniprot.org/uniprotkb/F4I1G1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites.", "journal": "Plant methods", "date": "2005-11-01", "authors": "Wolschin Florian, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" } ], "reference": [ { "type": "PubMed", "id": "16270910", "url": "https://glygen.org/publication/PubMed/16270910" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "F4I1G1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I1G1" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after 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} ], "crossref": [ { "id": "F4I1Z0", "url": "https://alphafold.ebi.ac.uk/entry/F4I1Z0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G63110", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G63110", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "842615", "url": "https://www.ncbi.nlm.nih.gov/gene/842615", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4I1Z0", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4I1Z0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR009600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ALWHLWI", "url": "https://omabrowser.org/oma/group/ALWHLWI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13121", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13121", "database": "PANTHER", "categories": [ "Protein 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"MAEEQKMKQLSRFWIWALSSIAFRLILISFPGNLNLSSRPEVSTPLTSIRRLAEGYWLKQASMSPYAGSMYHGSPLLLSVLGPLTVQRIKGQPSHLLCSLVFVIADILSAMLLRAIGQKLQMAYGLNARLLGFLKSSRDKVILPCGDIAALVYLWNPFTIVSCVGLSTSPIENLAVILALFGAVTRRVPLAAFGLVIATHLSLYPATLTIPIIFLLGYGLDAPPIKLFLQTRSVENEESSTSTVSKQAKLKQTTHLPFLWKTVAHFLFWVLLWSLYVLILCALSLNKYGGLEEMFKRTYGFILSIEDLSPNIGVFWYFFAEVFDFFRNFFLIVLHVNILFMLLPLAIRLKHRPCFLAFIYLAISSILKSYPSVGDSALYLSLWALFVNELLDMKFSFFLFCGYLGISLLSPVMHNLWIWRGTGNANFYFGNAIGYACFQIVFVVESVSAMLNHDRALKRSNSNHREVKS", "length": 469, "header": "tr|F4I1Z0-1|F4I1Z0_ARATH Isoform 1 of GPI transamidase subunit PIG-U OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I1Z0-1" }, "isoforms": [ { "isoform_ac": "F4I1Z0-1", "url": "https://www.uniprot.org/uniprotkb/F4I1Z0/entry#F4I1Z0-1", "sequence": { "sequence": 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"phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I1Z0", "url": "https://www.uniprot.org/uniprotkb/F4I1Z0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I1Z0", "url": "https://www.uniprot.org/uniprotkb/F4I1Z0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "P41733-1", "protein_name": "GPI transamidase component GAB1", "gene_name": "GAB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDSTALKVALGCIAIRLAVNSLFPSLQQQLDQSVEFSTPVTSFRSLQEGIYLLRNNIQVYNHGVVHHPPILIFFLSLFNSDRLISLIYALIDGLIAYQLTEVTKAFKNLKLKVWLPGLLYAVNPLTLLSCISRSSIIFTNFAISSSLYCILAEGNVLLSSVMISISGYLSVYPILLLIPLLGMLKSWRQRILSAIVSILSLLILLLFSYSILGSQSWSFLTQVYGSIITFEKVFPNLGLWWYFFIEMFDTFIPFFKAVFNIFIAVFITPFTLRYHKQPFYAFILCIGWIVLTKPYPSLGDAGFFFSFLPFFTPLFGYLRYPIISALLFLHAIVLAPIFYHLWVVLGSGNSNFFYAISLVYALAIASILVDLNWAMLRIEYDNGIPNFKLKVTQI", "length": 394 }, "evidence": [ { "id": "F4I1Z0", "url": "https://omabrowser.org/oma/group/F4I1Z0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54T45-1", "protein_name": "GPI transamidase subunit PIG-U family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTSVRASKQQQHTKSQHEQQQQQQQQQQTETTIKDDNKNGKGNYNFKSFLLILFSAILIRIILFYQGFDQLFSNRNEITTPLTSFKRLVEGLHLRELGLSPYAGSAYHQPPLVLLLFYPFVNSINISNNNNNSGDGNNYLIFGIFEKSQILFLIIDCIIAIVLREIAKQIPRVLPKEMKPISANSNLPNITAALYLFNPFTIFTCIGMSTINLTNLAIVLSLYYSLKGMIFQSVFSVAMASYLSIYPVVLIFPCALILKHHFFPPQQTQPVAQNQLPSDQSKQLKQLLERNERPMLLLFYFRILIFFLLSISSLFYLSFTFLNSWEFFEKSYKFTFFVEDLTPNIGLFWYYFIEVFDHFRNLFLFIFQYHVFIYCIPLAIRLKDHPLFYFWSLCAIIATFKSYPALGDTALHVSLLPLLYQPLKGVKYSFIVIVVAIFVTVLAPILWQMWIYQGTGNANFYYTINLVFTIAQVLLIVDSLSVLLKLDYVNKINLKNKLLENNQIEQQQQQQQHQQEKEKEQQEKEQQEEQQDEKTDLESSSQKIDDNNNENNSEENEEK", "length": 560 }, "evidence": [ { "id": "F4I1Z0", "url": "https://omabrowser.org/oma/group/F4I1Z0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8CHJ0-1", "protein_name": "GPI-anchor transamidase component PIGU", "gene_name": "PIGU", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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"MAAPLALVLVVAVTVRAALFRSSLAEFISERVEVVSPLSSWKRVVEGLALLDLGVSPYSGAVFHETPLIIYLFHFLIDYAELVFMITDALTAIALYFAIQDFNKVVFKKQKLLLELDQYAPDVAELIRTPMEMRYIPLKVALFYLLNPYTILSCVAKSTCAINNTLIAFFILTTIKGSVFLSAIFLALATYQSLYPITLFAPGLLYLLQRQYIPVKVKSKAFWIFSWEYAMMYTGSLVVIVCLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLFWYFFAEMFEHFSLFFVCVFQINVFFYTVPLAIKLKEHPIFFMFIQIAIISIFKSYPTVGDVALYMAFFPVWSHLYRFLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHGLYLTAKDGTEAMLVLK", "length": 435 }, "evidence": [ { "id": "F4I1Z0", "url": "https://omabrowser.org/oma/group/F4I1Z0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9H490-1", "protein_name": "GPI-anchor transamidase component PIGU", "gene_name": "PIGU", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPLVLVLVVAVTVRAALFRSSLAEFISERVEVVSPLSSWKRVVEGLSLLDLGVSPYSGAVFHETPLIIYLFHFLIDYAELVFMITDALTAIALYFAIQDFNKVVFKKQKLLLELDQYAPDVAELIRTPMEMRYIPLKVALFYLLNPYTILSCVAKSTCAINNTLIAFFILTTIKGSAFLSAIFLALATYQSLYPLTLFVPGLLYLLQRQYIPVKMKSKAFWIFSWEYAMMYVGSLVVIICLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLFWYFFAEMFEHFSLFFVCVFQINVFFYTIPLAIKLKEHPIFFMFIQIAVIAIFKSYPTVGDVALYMAFFPVWNHLYRFLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHGLYLTAKDGTEAMLVLK", "length": 435 }, "evidence": [ { "id": "F4I1Z0", "url": "https://omabrowser.org/oma/group/F4I1Z0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VLK0-1", "protein_name": "Phosphatidylinositol glycan anchor biosynthesis class U", "gene_name": "PIG-U", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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"evidence": [ { "id": "F4I350", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I350" } ] }, { "name": "F1N18_13", "type": "synonym", "evidence": [ { "id": "F4I350", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I350" } ] } ], "protein_names": [ { "name": "Magnesium transporter CorA-like family protein", "type": "synonym", "evidence": [ { "id": "F4I350", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I350/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I350", "url": "https://www.uniprot.org/uniprotkb/F4I350" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4I350", "locus": {} } ], "crossref": [ { "id": "F4I350", "url": "https://alphafold.ebi.ac.uk/entry/F4I350", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G29830", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G29830", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839861", "url": "https://www.ncbi.nlm.nih.gov/gene/839861", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G29830", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G29830", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CIPRTIH", "url": "https://omabrowser.org/oma/group/CIPRTIH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46950", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46950", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46950:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46950:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01544", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01544", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G29830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G29830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I350", "url": "https://www.uniprot.org/uniprotkb/F4I350", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I350-1", "url": "https://www.uniprot.org/uniprotkb/F4I350-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I352", "url": "https://www.uniprot.org/uniprotkb/F4I352", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I352-1", "url": "https://www.uniprot.org/uniprotkb/F4I352-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXF8", "url": "https://www.uniprot.org/uniprotkb/Q9FXF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FXF8-1", "url": "https://www.uniprot.org/uniprotkb/Q9FXF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISSFHNLQLVVWYELCKLLGIFHRYYLVSRAMNRQDPAITTNHVSQESKNHSGVPKSDLWTDGIICAFEFIRGPKKHVDSKQLYKGYLKQEDGPIRHSFPGHNPFIDSPAVDYLRSRSVSSLDFKEAHVLPSGHVERSEGSHWVPIGWTRITKLVQQVQVNAEWPNLKLIDDEEDVPVTDLAAPYWERPGGPTWWCHLTAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVDGGLLFELLGQSMGDPVIGEDDVPVVFRSWQAKNFLVSVMHIKGNVSKSNVLGITEVEELLYAGSYNVPRTIHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNHEDLNLFSIILNQEIRKLARQTIRVKWSLHAREEIILELLQHLRGNIPRHLLEGLRNNTREMLEEQEAVRGRLFTIQDNIQSNIRSWLQDQSLNGSHNLAIFGGCGLVLTIILGLFSVNLDGVPGVKHTPYAFVLFSVFLVLIGIVLIAFGLRYLGPKKPITEEHVEARKLELQNVVKIFQHEAETHAQLRRNNLSPTAGDVFDADYFLIQ", "length": 568, "header": "tr|F4I350-1|F4I350_ARATH Isoform 1 of Magnesium transporter CorA-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I350-1" }, "isoforms": [ { "isoform_ac": "F4I350-1", "url": "https://www.uniprot.org/uniprotkb/F4I350/entry#F4I350-1", "sequence": { "sequence": "MISSFHNLQLVVWYELCKLLGIFHRYYLVSRAMNRQDPAITTNHVSQESKNHSGVPKSDLWTDGIICAFEFIRGPKKHVDSKQLYKGYLKQEDGPIRHSFPGHNPFIDSPAVDYLRSRSVSSLDFKEAHVLPSGHVERSEGSHWVPIGWTRITKLVQQVQVNAEWPNLKLIDDEEDVPVTDLAAPYWERPGGPTWWCHLTAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVDGGLLFELLGQSMGDPVIGEDDVPVVFRSWQAKNFLVSVMHIKGNVSKSNVLGITEVEELLYAGSYNVPRTIHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNHEDLNLFSIILNQEIRKLARQTIRVKWSLHAREEIILELLQHLRGNIPRHLLEGLRNNTREMLEEQEAVRGRLFTIQDNIQSNIRSWLQDQSLNGSHNLAIFGGCGLVLTIILGLFSVNLDGVPGVKHTPYAFVLFSVFLVLIGIVLIAFGLRYLGPKKPITEEHVEARKLELQNVVKIFQHEAETHAQLRRNNLSPTAGDVFDADYFLIQ", "length": 568, "header": "tr|F4I350-1|F4I350_ARATH Isoform 1 of Magnesium transporter CorA-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I350-1" }, "locus": { "chromosome": "1", "start_pos": 10441053, "end_pos": 10445657, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G29830.3", "url": "https://www.ensemblgenomes.org/id/AT1G29830.3" }, { "database": "Ensembl Peptide", "id": "AT1G29830.3", "url": "https://www.ensemblgenomes.org/id/AT1G29830.3" } ] } }, { "isoform_ac": "F4I352-1", "url": "https://www.uniprot.org/uniprotkb/F4I350/entry#F4I352-1", "sequence": { "sequence": "MGENGENHSVSQESKNHSGVPKSDLWTDGIICAFEFIRGPKKHVDSKQLYKGYLKQEDGPIRHSFPGHNPFIDSPAVDYLRSRSVSSLDFKEAHVLPSGHVERSEGSHWVPIGWTRITKLVQQVQVNAEWPNLKLIDDEEDVPVTDLAAPYWERPGGPTWWCHLTAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVDGGLLFELLGQSMGDPVIGEDDVPVVFRSWQAKNFLVSVMHIKGNVSKSNVLGITEVEELLYAGSYNVPRTIHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNHEDLNLFSIILNQEIRKLARQTIRVKWSLHAREEIILELLQHLRGNIPRHLLEGLRNNTREMLEEQEAVRGRLFTIQDNIQSNIRSWLQDQSLNGSHNLAIFGGCGLVLTIILGLFSVNLDGVPGVKHTPAKEAHHRRTCRS", "length": 464, "header": "tr|F4I352-1|F4I352_ARATH Computationally mapped isoform of Magnesium transporter CorA-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I350-1" }, "locus": { "chromosome": "1", "start_pos": 10441622, "end_pos": 10445657, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G29830.2", "url": "https://www.ensemblgenomes.org/id/AT1G29830.2" }, { "database": "Ensembl Peptide", "id": "AT1G29830.2", "url": "https://www.ensemblgenomes.org/id/AT1G29830.2" } ] } }, { "isoform_ac": "Q9FXF8-1", "url": "https://www.uniprot.org/uniprotkb/F4I350/entry#Q9FXF8-1", "sequence": { "sequence": "MGENGENHSVSQESKNHSGVPKSDLWTDGIICAFEFIRGPKKHVDSKQLYKGYLKQEDGPIRHSFPGHNPFIDSPAVDYLRSRSVSSLDFKEAHVLPSGHVERSEGSHWVPIGWTRITKLVQQVQVNAEWPNLKLIDDEEDVPVTDLAAPYWERPGGPTWWCHLTAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEVPVRVDGGLLFELLGQSMGDPVIGEDDVPVVFRSWQAKNFLVSVMHIKGNVSKSNVLGITEVEELLYAGSYNVPRTIHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNHEDLNLFSIILNQEIRKLARQTIRVKWSLHAREEIILELLQHLRGNIPRHLLEGLRNNTREMLEEQEAVRGRLFTIQDNIQSNIRSWLQDQSLNGSHNLAIFGGCGLVLTIILGLFSVNLDGVPGVKHTPYAFVLFSVFLVLIGIVLIAFGLRYLGPKKPITEEHVEARKLELQNVVKIFQHEAETHAQLRRNNLSPTAGDVFDADYFLIQ", "length": 533, "header": "tr|Q9FXF8-1|Q9FXF8_ARATH Computationally mapped isoform of Magnesium transporter CorA-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I350-1" }, "locus": { "chromosome": "1", "start_pos": 10441607, "end_pos": 10445657, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G29830.1", "url": "https://www.ensemblgenomes.org/id/AT1G29830.1" }, { "database": "Ensembl Peptide", "id": "AT1G29830.1", "url": "https://www.ensemblgenomes.org/id/AT1G29830.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 194, "start_aa": "Thr", "end_pos": 194, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr194", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 119, "end_pos": 119, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FXF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXF8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser119" }, { "start_pos": 121, "end_pos": 121, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FXF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXF8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser121" }, { "start_pos": 122, "end_pos": 122, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9FXF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FXF8" 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Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I386", "url": "https://www.uniprot.org/uniprotkb/F4I386" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": 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Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I386", "url": "https://www.uniprot.org/uniprotkb/F4I386" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G36580", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G36580", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "2,4-dienoyl-CoA reductase (NADPH) activity", "id": "GO:0008670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008670", "evidence": [ { "database": "UniProtKB", "id": "F4I386", "url": "https://www.uniprot.org/uniprotkb/F4I386" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "fatty acid catabolic process", "id": "GO:0009062", "url": 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J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I3J6", "url": "https://www.uniprot.org/uniprotkb/F4I3J6" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher 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"protein_names": [ { "name": "Eisosome protein", "type": "synonym", "evidence": [ { "id": "F4I444", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I444/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I444", "url": "https://www.uniprot.org/uniprotkb/F4I444" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4I444", "locus": {} } ], "crossref": [ { "id": "839326", "url": "https://www.ncbi.nlm.nih.gov/gene/839326", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G04030", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G04030", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ECNSASF", "url": "https://omabrowser.org/oma/group/ECNSASF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4I444", "url": "https://www.orthodb.org/?gene=F4I444", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33318:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33318:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT1G04030", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G04030", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I444", "url": "https://www.uniprot.org/uniprotkb/F4I444", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I444-1", "url": "https://www.uniprot.org/uniprotkb/F4I444-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCFSGCFGGRKNRRRQRRRDSDEARDNKLSVETAEPHHLNDRVHIVEEIPKASVIPITEICDEAEEKCSPSTISRKRVTFDSKVKTYEHVVSEESVELSEEKNEEVESEKRSLKSSKTDDQIIEVASNSSGSYPENHRYKNCRESDDDIEEDEFDCSDSDLDEDEEYYSDVGFSEDSLHNPTKEVYTQDIGDKTEEIDSKLRRSNETVRDGNHYDGQGVLNPVENLTQWKSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQIDDITLSVKPKCRIEPKKLRNQELAVDASLSTWLSTSESGSECNSASMYTLTPEKLKSTSCYSKPLRINHDDRPVLCALTLEDIKQFSATSTPRKSPSKSPDETPIIGTVGGYWGNRSKAIDCGSASSFKGIPNTSSKYREDKSVNWHSTPFEARLEKALNNIDK", "length": 434, "header": "tr|F4I444-1|F4I444_ARATH Isoform 1 of Eisosome protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I444-1" }, "isoforms": [ { "isoform_ac": "F4I444-1", "url": "https://www.uniprot.org/uniprotkb/F4I444/entry#F4I444-1", "sequence": { "sequence": "MGCFSGCFGGRKNRRRQRRRDSDEARDNKLSVETAEPHHLNDRVHIVEEIPKASVIPITEICDEAEEKCSPSTISRKRVTFDSKVKTYEHVVSEESVELSEEKNEEVESEKRSLKSSKTDDQIIEVASNSSGSYPENHRYKNCRESDDDIEEDEFDCSDSDLDEDEEYYSDVGFSEDSLHNPTKEVYTQDIGDKTEEIDSKLRRSNETVRDGNHYDGQGVLNPVENLTQWKSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQIDDITLSVKPKCRIEPKKLRNQELAVDASLSTWLSTSESGSECNSASMYTLTPEKLKSTSCYSKPLRINHDDRPVLCALTLEDIKQFSATSTPRKSPSKSPDETPIIGTVGGYWGNRSKAIDCGSASSFKGIPNTSSKYREDKSVNWHSTPFEARLEKALNNIDK", "length": 434, "header": "tr|F4I444-1|F4I444_ARATH Isoform 1 of Eisosome protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I444-1" }, "locus": { "chromosome": "1", "start_pos": 1040375, "end_pos": 1042892, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G04030.1", "url": "https://www.ensemblgenomes.org/id/AT1G04030.1" }, { "database": "Ensembl Peptide", "id": "AT1G04030.1", "url": "https://www.ensemblgenomes.org/id/AT1G04030.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 367, "end_pos": 367, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I444", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I444" } ], "site_lbl": "Ser367" }, { "start_pos": 369, "end_pos": 369, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I444", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I444" } ], "site_lbl": "Ser369" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I444", "url": "https://www.uniprot.org/uniprotkb/F4I444" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I444", "url": "https://www.uniprot.org/uniprotkb/F4I444" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G04030", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G04030", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4I444", "url": "https://www.uniprot.org/uniprotkb/F4I444" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "male meiosis II", "id": "GO:0007142", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007142", "evidence": [ { "database": "UniProtKB", "id": "F4I444", "url": "https://www.uniprot.org/uniprotkb/F4I444" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 385, "end_pos": 387, "annotation": "n_glycosylation_sequon" }, { "start_pos": 403, "end_pos": 405, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 367, 369 ], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 226, "end_pos": 228 }, { "start_pos": 385, "end_pos": 387 }, { "start_pos": 403, "end_pos": 405 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"protein_names": [ { "name": "Transducin family protein / WD-40 repeat family protein", "type": "synonym", "evidence": [ { "id": "F4I458", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I458/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I458", "url": "https://www.uniprot.org/uniprotkb/F4I458" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4I458", "locus": {} } ], "crossref": [ { "id": "F4I458", "url": "https://alphafold.ebi.ac.uk/entry/F4I458", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G04140", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G04140", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839272", "url": "https://www.ncbi.nlm.nih.gov/gene/839272", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4I458", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4I458*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052596", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052596", "database": 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"sequence": "MLSPFSSPRRSRRGNKESKNPYSNQGLDKFSALLSELDEKRQSIYAKRLDPDGPPLVRFVFTSSGECVPVMIKTKRASQKKDVLDDFKVKKKDVLDDFKVKNKDVLDDFNVKTESKTEQEKEIKQTDLETEQKQSCVLNENLKKISRPNHLLPVTVVLVLILLVFFGRTVSIMCTCIVWYLVPMIKEQSRNRGSTYETKRRKKLNIENRAAPDKSETR", "length": 218, "header": "tr|F4I499-1|F4I499_ARATH Isoform 1 of ZCF37 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I499-1" }, "locus": { "chromosome": "1", "start_pos": 3351929, "end_pos": 3353108, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G10220.2", "url": "https://www.ensemblgenomes.org/id/AT1G10220.2" }, { "database": "Ensembl Peptide", "id": "AT1G10220.2", "url": "https://www.ensemblgenomes.org/id/AT1G10220.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, 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"reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I498", "url": "https://www.uniprot.org/uniprotkb/F4I498" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G10220", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G10220", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": 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mapped isoform of Tetratricopeptide repeat (TPR)-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I4G1-1" }, "locus": { "chromosome": "1", "start_pos": 5625699, "end_pos": 5628656, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G16480.2", "url": "https://www.ensemblgenomes.org/id/AT1G16480.2" }, { "database": "Ensembl Peptide", "id": "AT1G16480.2", "url": "https://www.ensemblgenomes.org/id/AT1G16480.2" } ] } }, { "isoform_ac": "F4I4G1-1", "url": "https://www.uniprot.org/uniprotkb/F4I4G1/entry#F4I4G1-1", "sequence": { "sequence": 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J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I4G0", "url": "https://www.uniprot.org/uniprotkb/F4I4G0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I4G0", "url": "https://www.uniprot.org/uniprotkb/F4I4G0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G16480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G16480", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F4I4G1", "url": "https://www.uniprot.org/uniprotkb/F4I4G1" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4I4G1", "url": "https://www.uniprot.org/uniprotkb/F4I4G1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "RNA modification", "id": "GO:0009451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009451", "evidence": [ { "database": "UniProtKB", "id": "F4I4G1", "url": "https://www.uniprot.org/uniprotkb/F4I4G1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4I4G1", "url": "https://www.uniprot.org/uniprotkb/F4I4G1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" }, { "start_pos": 628, "end_pos": 630, "annotation": "n_glycosylation_sequon" }, { "start_pos": 759, "end_pos": 761, "annotation": "n_glycosylation_sequon" }, { "start_pos": 868, "end_pos": 870, 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C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I4I3", "url": "https://www.uniprot.org/uniprotkb/F4I4I3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, 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Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I4K9", "url": "https://www.uniprot.org/uniprotkb/F4I4K9" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I4K9", "url": "https://www.uniprot.org/uniprotkb/F4I4K9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G23037", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G23037", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4I4K9", "url": "https://www.uniprot.org/uniprotkb/F4I4K9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4I4K9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 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"MDPIESVEYNGFETTNGNSHNDDHGWKKVVYPKRNRKQKPADQAAATKNGVTGNLIPNGTLSNGGGNVFRSLEEQAEGRHLQILAAKKASDTADVSDGGRSKWRSNGYGDEGYDFDDSDSEIAVGKENLKAEEVKKPKVKKVKKPKVTLAEAAAKIDVSNLAAFLVEASESYASQPEIQLMKFADYFGRSLSQVSSAHFPWVKTFKESPLSKLIDIPLSHIPEAVYKTSADWINQRPIEALGAFVLWGLDCILADLAVQQGGVKGGKKGAQQASSKSQVAIFVAVAMVLRKKPDALTNILPTLRENPKYQGQDKLPVTVWMMAQASQGDISVGLYSWAHNLLPVVSSKSCNPQSRDLILQLVERILSNPKARTILVNGAVRKGERLIPPPSFEILVRLTFPASSARVKATERFEAIYPLLKEVSLAGAPGSKAMKQVTQQIFTFALKAAGEENPLLAKEAAAITIWALTQNVDCCKHWENLYTDNLKASVAVLKKLIGEWKERSVKLTPAETLTLNQTMKSLRQKNEEALTEGGNGVSQSLYKDADKYCKVIAGKLSSGGCIKSIATTAALLAATGFAGAAALSANPEAIAYLKNLVESLDINKFTETVMTALKN", "length": 615, "header": "tr|F4I4N4-1|F4I4N4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I4N4-1" }, "isoforms": [ { "isoform_ac": "F4I4N4-1", "url": "https://www.uniprot.org/uniprotkb/F4I4N4/entry#F4I4N4-1", "sequence": { "sequence": 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"database": "Ensembl Peptide", "id": "AT1G23170.2", "url": "https://www.ensemblgenomes.org/id/AT1G23170.2" } ] } }, { "isoform_ac": "F4I4N5-1", "url": "https://www.uniprot.org/uniprotkb/F4I4N4/entry#F4I4N5-1", "sequence": { "sequence": "MDPIESVEYNGFETTNGNSHNDDHGWKKVVYPKRNRKQKPADQAAATKNGVTGNLIPNGTLSNGGGNVFRSLEEQAEGRHLQILAAKKASDTADVSDGGRSKWRSNGYGDEGYDFDDSDSEIAVGKENLKAEEVKKPKVKKVKKPKVTLAEAAAKIDVSNLAAFLVEASIPLSHIPEAVYKTSADWINQRPIEALGAFVLWGLDCILADLAVQQGGVKGGKKGAQQASSKSQVAIFVAVAMVLRKKPDALTNILPTLRENPKYQGQDKLPVTVWMMAQASQGDISVGLYSWAHNLLPVVSSKSCNPQSRDLILQLVERILSNPKARTILVNGAVRKGERLIPPPSFEILVRLTFPASSARVKATERFEAIYPLLKEVSLAGAPGSKAMKQVTQQIFTFALKAAGEENPLLAKEAAAITIWALTQNVDCCKHWENLYTDNLKASVAVLKKLIGEWKERSVKLTPAETLTLNQTMKSLRQKNEEALTEGGNGVSQSLYKDADKYCKVIAGKLSSGGCIKSIATTAALLAATGFAGAAALSANPEAIAYLKNLVESLDINKFTETVMTALKN", "length": 569, "header": "tr|F4I4N5-1|F4I4N5_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I4N4-1" }, "locus": { "chromosome": "1", "start_pos": 8212724, "end_pos": 8215516, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G23170.1", "url": "https://www.ensemblgenomes.org/id/AT1G23170.1" }, { "database": "Ensembl Peptide", "id": "AT1G23170.1", "url": "https://www.ensemblgenomes.org/id/AT1G23170.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 101, "end_pos": 101, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I4N5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I4N5" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser101" }, { "start_pos": 118, "end_pos": 118, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I4N5", "url": 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X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I4N4", "url": "https://www.uniprot.org/uniprotkb/F4I4N4" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4I4N5", "url": 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Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4I4N5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I4N5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4I4N5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I4N5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": 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"MYTRTIRRNQRWGFVLQQDKCLVRPVIRDHTGSQSYRSTTSILTDHLRRNHHSHGAIASRDYLSYSWNSQLRRFSSEGDGNNASEDSRFPLNKDKMGKEKSTVGVEHFDSHAQLGVQDQIEWLNNEKRASESRKESPFLNKRERLKNEFLRRIQPWETIQLSWESFPYYVHEHTKDTLVECVSSHIKQKSMTSKYGARLDSSSGRILLQSVPGTELYRERLVRALARDTQVPLLVLDSSVLAPYDFADDYNEESESDDDIAESDQCTSQSEAEEETDGDNDDTSSSETKIEGTDDEERYLEISKEVLKKLGADIEDIEKRMSEQLYGSSEVSEAAAVDQDDKAKRPLKKGDQVKYVGSPKKDEAKHRVVLGKISTSDGQKSAFTVIPGRPLSSGQRGEVYEVIGNRVAVIFEYGDDKTSEGSEKKPAEQPQMLPIHWLDVKDLKYDLDMQAVDGYIAMEALNEVLQSIQPLIVYFPDSTQWLSRAVPKTRRKEFVDKVKEMFDKLSGPIVMICGQNKIETGSKEREKFTMVLPNLSRVVKLPLPLKGLTEGFTGRGKSEENEIYKLFTNVMRLHPPKEEDTLRLFKKQLGEDRRIVISRSNINELLKALEEHELLCTDLYQVNTDGVILTKQKAEKAIGWAKNHYLASCPVPLVKGGRLSLPRESLEISIARLRKLEDNSLKPSQNLKNIAKDEYERNFVSAVVAPGEIGVKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVIIFVDEIDSLLGARGGSSEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRLKILKIFLTPENLESDFQFEKLAKETEGYSGSDLKNLCIAAAYRPVQELLQEEQKGARAEASPGLRSLSLDDFIQSKAKVSPSVAYDATTMNELRKWNEQYGEGGSRTKSPFGF", "length": 1003, "header": "tr|F4I4Y6-1|F4I4Y6_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I4Y6-1" }, "isoforms": [ { "isoform_ac": "F4I4Y5-1", "url": "https://www.uniprot.org/uniprotkb/F4I4Y6/entry#F4I4Y5-1", "sequence": { "sequence": 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"header": "tr|F4I4Y5-1|F4I4Y6_ARATH Computationally mapped isoform of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I4Y6-1" }, "locus": { "chromosome": "1", "start_pos": 18569735, "end_pos": 18578702, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G50140.5", "url": "https://www.ensemblgenomes.org/id/AT1G50140.5" }, { "database": "Ensembl Peptide", "id": "AT1G50140.5", "url": "https://www.ensemblgenomes.org/id/AT1G50140.5" } ] } }, { "isoform_ac": "F4I4Y6-1", "url": "https://www.uniprot.org/uniprotkb/F4I4Y6/entry#F4I4Y6-1", "sequence": { "sequence": "MYTRTIRRNQRWGFVLQQDKCLVRPVIRDHTGSQSYRSTTSILTDHLRRNHHSHGAIASRDYLSYSWNSQLRRFSSEGDGNNASEDSRFPLNKDKMGKEKSTVGVEHFDSHAQLGVQDQIEWLNNEKRASESRKESPFLNKRERLKNEFLRRIQPWETIQLSWESFPYYVHEHTKDTLVECVSSHIKQKSMTSKYGARLDSSSGRILLQSVPGTELYRERLVRALARDTQVPLLVLDSSVLAPYDFADDYNEESESDDDIAESDQCTSQSEAEEETDGDNDDTSSSETKIEGTDDEERYLEISKEVLKKLGADIEDIEKRMSEQLYGSSEVSEAAAVDQDDKAKRPLKKGDQVKYVGSPKKDEAKHRVVLGKISTSDGQKSAFTVIPGRPLSSGQRGEVYEVIGNRVAVIFEYGDDKTSEGSEKKPAEQPQMLPIHWLDVKDLKYDLDMQAVDGYIAMEALNEVLQSIQPLIVYFPDSTQWLSRAVPKTRRKEFVDKVKEMFDKLSGPIVMICGQNKIETGSKEREKFTMVLPNLSRVVKLPLPLKGLTEGFTGRGKSEENEIYKLFTNVMRLHPPKEEDTLRLFKKQLGEDRRIVISRSNINELLKALEEHELLCTDLYQVNTDGVILTKQKAEKAIGWAKNHYLASCPVPLVKGGRLSLPRESLEISIARLRKLEDNSLKPSQNLKNIAKDEYERNFVSAVVAPGEIGVKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVIIFVDEIDSLLGARGGSSEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRLKILKIFLTPENLESDFQFEKLAKETEGYSGSDLKNLCIAAAYRPVQELLQEEQKGARAEASPGLRSLSLDDFIQSKAKVSPSVAYDATTMNELRKWNEQYGEGGSRTKSPFGF", "length": 1003, "header": "tr|F4I4Y6-1|F4I4Y6_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I4Y6-1" }, "locus": { "chromosome": "1", "start_pos": 18569735, "end_pos": 18578702, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G50140.4", "url": "https://www.ensemblgenomes.org/id/AT1G50140.4" }, { "database": "Ensembl Peptide", "id": "AT1G50140.4", "url": "https://www.ensemblgenomes.org/id/AT1G50140.4" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 293, "end_pos": 293, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I4Y5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I4Y5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr293" }, { "start_pos": 680, "end_pos": 680, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I4Y5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I4Y5" } ], "site_lbl": "Ser680" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I4Y5", "url": "https://www.uniprot.org/uniprotkb/F4I4Y5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4I4Y5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I4Y5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I4Y5", "url": "https://www.uniprot.org/uniprotkb/F4I4Y5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4I4Y5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I4Y5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT1G50140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G50140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F4I4Y6", "url": "https://www.uniprot.org/uniprotkb/F4I4Y6" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F4I4Y6", "url": "https://www.uniprot.org/uniprotkb/F4I4Y6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "F4I4Y6", "url": "https://www.uniprot.org/uniprotkb/F4I4Y6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4I4Y6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4Y6" }, { "id": "SM00382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAA+ ATPase", "eco_id": "ECO_0000259", "start_pos": 748, "end_pos": 885, "start_aa": "Pro", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 293, 680 ], "sequon_annotation_sites": [ { "start_pos": 534, "end_pos": 536 }, { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4I4Z0-1", "uniprot_ac": "F4I4Z0", "uniprot_id": "F4I4Z0_ARATH", "mass": { "chemical_mass": 70733.0, "monoisotopic_mass": 70733.0 }, "refseq": { "ac": "NP_175438", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175438" }, "gene_names": [ { "name": "F14I3.18", "type": "synonym", "evidence": [ { "id": "NP_175438", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175438" }, { "id": "F4I4Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4Z0" } ] }, { "name": "F14I3_18", "type": "synonym", "evidence": [ { "id": "NP_175438", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175438" }, { "id": "F4I4Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4Z0" } ] } ], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_175438", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175438" }, { "id": "F4I4Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I4Z0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I4Z0", "url": "https://www.uniprot.org/uniprotkb/F4I4Z0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4I4Z0", "locus": {} } ], "crossref": [ { "id": "F4I4Z0", "url": "https://alphafold.ebi.ac.uk/entry/F4I4Z0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G50190", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G50190", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "3767425", "url": "https://www.ncbi.nlm.nih.gov/gene/3767425", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G50190", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G50190", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CHIRITR", "url": "https://omabrowser.org/oma/group/CHIRITR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF210", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF210", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_175438", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175438", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G50190", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G50190", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I4Z0", "url": "https://www.uniprot.org/uniprotkb/F4I4Z0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I4Z0-1", "url": "https://www.uniprot.org/uniprotkb/F4I4Z0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGSKSKPLCRMSDLAKPHKLGRRFDPPLTVCISCKGQQYTGNRRGYYYYCATCDLEFHKGCYLFPPEIKHPFHLIHPLTLTFLDHNLVSSAIPEIWFLLSTEYPYKHMFGDEEECASDGNHKRCNSCRKKITYRDPDYPSFFDITYYHCSICNFSLHSSCVKDSPPHTIENLKSHEHTLTLFPRLLPLPCDACGFSLDARNDSVYSFAVPSGDELSCGVCRKLVDVNYGQYACKKGCHYAVHSKCATKNEVWDGKDLDGVPEEEEEEIEPFVRIDEETIQHFSHDHHYLKIHHGNDNHENKFCQACILRITVSDSFYSCVQCDFVIHETCAGLPRIKHHPLHKHPLTLYHLHYPHLNEVQSKYYDLGFFACSGCSRECCGFMYKCCEKDCDFQLDARCASLPDPIIHDCHPHDHPLFFNLTEGECMVCKITSGLRKYLECIECRSFSCLTCATMPLVAHYKYDKHPLTLCCGEEKTKDLQYWCEICESEIDAQKWFYTCSYCSVTLHVTCLLGDKVYMKPNHMIKMYEGAKTSIGIVPNSGNSRPMCDGCRSRCVDTLVVKTKMNYARDELDGAMIISKTLTKSDIVGNVALPKAQVMSVLTRMNGVTDEGLDNGFEV", "length": 619, "header": "tr|F4I4Z0-1|F4I4Z0_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I4Z0-1" }, "isoforms": [ { "isoform_ac": "F4I4Z0-1", "url": "https://www.uniprot.org/uniprotkb/F4I4Z0/entry#F4I4Z0-1", "sequence": { "sequence": "MDGSKSKPLCRMSDLAKPHKLGRRFDPPLTVCISCKGQQYTGNRRGYYYYCATCDLEFHKGCYLFPPEIKHPFHLIHPLTLTFLDHNLVSSAIPEIWFLLSTEYPYKHMFGDEEECASDGNHKRCNSCRKKITYRDPDYPSFFDITYYHCSICNFSLHSSCVKDSPPHTIENLKSHEHTLTLFPRLLPLPCDACGFSLDARNDSVYSFAVPSGDELSCGVCRKLVDVNYGQYACKKGCHYAVHSKCATKNEVWDGKDLDGVPEEEEEEIEPFVRIDEETIQHFSHDHHYLKIHHGNDNHENKFCQACILRITVSDSFYSCVQCDFVIHETCAGLPRIKHHPLHKHPLTLYHLHYPHLNEVQSKYYDLGFFACSGCSRECCGFMYKCCEKDCDFQLDARCASLPDPIIHDCHPHDHPLFFNLTEGECMVCKITSGLRKYLECIECRSFSCLTCATMPLVAHYKYDKHPLTLCCGEEKTKDLQYWCEICESEIDAQKWFYTCSYCSVTLHVTCLLGDKVYMKPNHMIKMYEGAKTSIGIVPNSGNSRPMCDGCRSRCVDTLVVKTKMNYARDELDGAMIISKTLTKSDIVGNVALPKAQVMSVLTRMNGVTDEGLDNGFEV", "length": 619, "header": "tr|F4I4Z0-1|F4I4Z0_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I4Z0-1" }, "locus": { "chromosome": "1", "start_pos": 18588229, "end_pos": 18590799, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G50190.1", "url": 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D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I5J7", "url": "https://www.uniprot.org/uniprotkb/F4I5J7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4I5J7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I5J7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I5J7", "url": "https://www.uniprot.org/uniprotkb/F4I5J7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G77020", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G77020", "resource": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47603", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47603:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47603:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT1G04590", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G04590", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I5Q5", "url": "https://www.uniprot.org/uniprotkb/F4I5Q5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I5Q5-1", "url": "https://www.uniprot.org/uniprotkb/F4I5Q5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGFSSLIPRTLLKRAVSSATRNLTAPLASISAARNLFIGGGCDENYGEPGVFSHSNGIRKYNTVGNAGALTGPFHHLLGVNQTNKPAFLRVQSMSYQFVADSHSSPKRIVKNEDEEDFSDSSKKGNAENPRKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKYSHLLLGTPSDDKPSRSSRKKKKPELRIPEATTEGAVDAAKAEIQEERKENLDNHQESEAATEKQFEHGA", "length": 384, "header": "tr|F4I5Q5-1|F4I5Q5_ARATH Isoform 1 of PPR containing-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I5Q5-1" }, "isoforms": [ { "isoform_ac": "F4I5Q5-1", "url": "https://www.uniprot.org/uniprotkb/F4I5Q5/entry#F4I5Q5-1", "sequence": { "sequence": 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S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I5Q5", "url": "https://www.uniprot.org/uniprotkb/F4I5Q5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I5Q5", "url": "https://www.uniprot.org/uniprotkb/F4I5Q5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4I5Q5", "url": "https://www.uniprot.org/uniprotkb/F4I5Q5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4I5Q5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 384, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4I5Q5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4I5Q5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { 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"MEAKEETPWSSILVPSVQEMVKDKMITTVPPRYVRYDQDKTEVVVHDSGLISEIPIIDMNRLCSSTAVDSEVEKLDFACKEYGFFQLVNHGIDPSFLDKIKSEIQDFFNLPMEEKKKLWQTPAVMEGFGQAFVVSEDQKLDWADLFFLIMQPVQLRKRHLFPKLPLPFRDTLDMYSTRVKSIAKILLAKMAKALQIKPEEVEEIFGDDMMQSMRMNYYPPCPQPNLVTGLIPHSDAVGLTILLQVNEVDGLQIKKNGKWFFVKPLQNAFIVNVGDVLEIITNGTYRSIEHRAMVNLEKERLSIATFHNTGMDKEIGPARSLVQRQEAAKFRSLKTKDYLNGLFSRELKGKAYLDAMRIEGK", "length": 361, "header": "tr|F4I629-1|F4I629_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I629-1" }, "isoforms": [ { "isoform_ac": "F4I629-1", "url": "https://www.uniprot.org/uniprotkb/F4I629/entry#F4I629-1", "sequence": { "sequence": 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"monoisotopic_mass": 89888.0 }, "refseq": { "ac": "NP_174335", "name": "SIT4 phosphatase-associated family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_174335" }, "gene_names": [ { "name": "F26G16.8", "type": "synonym", "evidence": [ { "id": "NP_174335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_174335" }, { "id": "F4I6B2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6B2" } ] }, { "name": "F26G16_8", "type": "synonym", "evidence": [ { "id": "NP_174335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_174335" }, { "id": "F4I6B2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6B2" } ] } ], "protein_names": [ { "name": "SIT4 phosphatase-associated family protein", "type": "synonym", "evidence": [ { "id": "NP_174335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_174335" }, { "id": "F4I6B2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6B2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I6B2", "url": "https://www.uniprot.org/uniprotkb/F4I6B2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4I6B2", "locus": {} } ], "crossref": [ { "id": "F4I6B2", "url": "https://alphafold.ebi.ac.uk/entry/F4I6B2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G30470", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G30470", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839926", "url": "https://www.ncbi.nlm.nih.gov/gene/839926", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4I6B2", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4I6B2*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR007587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G30470", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G30470", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RQMTHGS", "url": "https://omabrowser.org/oma/group/RQMTHGS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4I6B2", "url": "https://www.orthodb.org/?gene=F4I6B2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4I6B3", "url": "https://www.orthodb.org/?gene=F4I6B3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4I6B4", "url": "https://www.orthodb.org/?gene=F4I6B4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_174335", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_174335", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G30470", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G30470", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I6B2", "url": "https://www.uniprot.org/uniprotkb/F4I6B2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I6B2-1", "url": "https://www.uniprot.org/uniprotkb/F4I6B2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I6B3", "url": "https://www.uniprot.org/uniprotkb/F4I6B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I6B3-1", "url": "https://www.uniprot.org/uniprotkb/F4I6B3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I6B4", "url": "https://www.uniprot.org/uniprotkb/F4I6B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I6B4-1", "url": "https://www.uniprot.org/uniprotkb/F4I6B4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFWRMAGLSTASAVEAILDKDSFTLEDLLDEDEIIQECKALNGRLLNFLREKVQVEQLIRYIIEEPLEDVEKKRTFKFPFIACEIFTCEIEMILKTLVEDEELMLLLFSFLEAKETHNSLLAGYFSKVVICLLVRKTIPFMQFIKDHQEILKQLVDLIGITSIMEVLKRLVGTDEHLYSNYTSAMQWIEDTDVLEMIVDKFGSSESPEVHANAAEILCTVARYAPPGLATKLSSPSCTGRLLKHTLEDSRPKSVLVNSLSVCISLLDPKRFTLGTYHIYGRQLTHGSMVTNPETVEGMLGSLGDLLMLLNVSSAEGVLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKEVIRLGAVKRVLDLFFEYPYNNFLHHHVENVILSCMESKNSQLVDHLLSECNLIGSILEAEKDSTLTAGDSDKLQPTVPAEGKKPLRIGNIGHLTRISNKLLQLANSNVEIQSHLQENSKWVDWQTDVLSKRNTLENVYSWACGRPTSLHDRSRDSDDDDYHDRDYDVAALANNLSQAFRYGIYSNDDMDEAQGSMERDDEDVYFDDESAEVVISSLRLGDDQESDSLFTNSNWFAFDDDKAANERSMTSAASPSPNADGDGEDDDDVVIGEADEFNATAASSPPVDMETEDSTSKHPSENPSEPEPEKSPAWVEWRETSESTAPPSSNPEETTILSNGDVQIEKEDNDDDDDTDNKSAVKTPGVPGDETTEKLPDESGVEPTENSPKASGIEPTESSPKASGAEVTGNLRDSDPAESHADAKSSEPESPHGTKETEVAAEADTKETEEAVKEPEKVV", "length": 811, "header": "tr|F4I6B2-1|F4I6B2_ARATH Isoform 1 of SIT4 phosphatase-associated family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I6B2-1" }, "isoforms": [ { "isoform_ac": "F4I6B2-1", "url": "https://www.uniprot.org/uniprotkb/F4I6B2/entry#F4I6B2-1", "sequence": { "sequence": "MFWRMAGLSTASAVEAILDKDSFTLEDLLDEDEIIQECKALNGRLLNFLREKVQVEQLIRYIIEEPLEDVEKKRTFKFPFIACEIFTCEIEMILKTLVEDEELMLLLFSFLEAKETHNSLLAGYFSKVVICLLVRKTIPFMQFIKDHQEILKQLVDLIGITSIMEVLKRLVGTDEHLYSNYTSAMQWIEDTDVLEMIVDKFGSSESPEVHANAAEILCTVARYAPPGLATKLSSPSCTGRLLKHTLEDSRPKSVLVNSLSVCISLLDPKRFTLGTYHIYGRQLTHGSMVTNPETVEGMLGSLGDLLMLLNVSSAEGVLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKEVIRLGAVKRVLDLFFEYPYNNFLHHHVENVILSCMESKNSQLVDHLLSECNLIGSILEAEKDSTLTAGDSDKLQPTVPAEGKKPLRIGNIGHLTRISNKLLQLANSNVEIQSHLQENSKWVDWQTDVLSKRNTLENVYSWACGRPTSLHDRSRDSDDDDYHDRDYDVAALANNLSQAFRYGIYSNDDMDEAQGSMERDDEDVYFDDESAEVVISSLRLGDDQESDSLFTNSNWFAFDDDKAANERSMTSAASPSPNADGDGEDDDDVVIGEADEFNATAASSPPVDMETEDSTSKHPSENPSEPEPEKSPAWVEWRETSESTAPPSSNPEETTILSNGDVQIEKEDNDDDDDTDNKSAVKTPGVPGDETTEKLPDESGVEPTENSPKASGIEPTESSPKASGAEVTGNLRDSDPAESHADAKSSEPESPHGTKETEVAAEADTKETEEAVKEPEKVV", "length": 811, "header": "tr|F4I6B2-1|F4I6B2_ARATH Isoform 1 of SIT4 phosphatase-associated family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I6B2-1" }, "locus": { "chromosome": "1", "start_pos": 10779111, "end_pos": 10786666, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G30470.1", "url": "https://www.ensemblgenomes.org/id/AT1G30470.1" }, { "database": "Ensembl Peptide", "id": "AT1G30470.1", "url": "https://www.ensemblgenomes.org/id/AT1G30470.1" } ] } }, { "isoform_ac": "F4I6B3-1", "url": "https://www.uniprot.org/uniprotkb/F4I6B2/entry#F4I6B3-1", "sequence": { "sequence": "MAGLSTASAVEAILDKDSFTLEDLLDEDEIIQECKALNGRLLNFLREKVQVEQLIRYIIEEPLEDVEKKRTFKFPFIACEIFTCEIEMILKTLVEDEELMLLLFSFLEAKETHNSLLAGYFSKVVICLLVRKTIPFMQFIKDHQEILKQLVDLIGITSIMEVLKRLVGTDEHLYSNYTSAMQWIEDTDVLEMIVDKFGSSESPEVHANAAEILCTVARYAPPGLATKLSSPSCTGRLLKHTLEDSRPKSVLVNSLSVCISLLDPKRFTLGTYHIYGRQLTHGSMVTNPETVEGMLGSLGDLLMLLNVSSAEGVLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKEVIRLGAVKRVLDLFFEYPYNNFLHHHVENVILSCMESKNSQLVDHLLSECNLIGSILEAEKDSTLTAGDSDKPTVPAEGKKPLRIGNIGHLTRISNKLLQLANSNVEIQSHLQENSKWVDWQTDVLSKRNTLENVYSWACGRPTSLHDRSRDSDDDDYHDRDYDVAALANNLSQAFRYGIYSNDDMDEAQGSMERDDEDVYFDDESAEVVISSLRLGDDQESDSLFTNSNWFAFDDDKAANERSMTSAASPSPNADGDGEDDDDVVIGEADEFNATAASSPPVDMETEDSTSKHPSENPSEPEPEKSPAWVEWRETSESTAPPSSNPEETTILSNGDVQIEKEDNDDDDDTDNKSAVKTPGVPGDETTEKLPDESGVEPTENSPKASGIEPTESSPKASGAEVTGNLRDSDPAESHADAKSSEPESPHGTKETEVAAEADTKETEEAVKEPEKVV", "length": 805, "header": "tr|F4I6B3-1|F4I6B3_ARATH Computationally mapped isoform of SIT4 phosphatase-associated family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I6B2-1" }, "locus": { "chromosome": "1", "start_pos": 10779213, "end_pos": 10786697, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G30470.2", "url": "https://www.ensemblgenomes.org/id/AT1G30470.2" }, { "database": "Ensembl Peptide", "id": "AT1G30470.2", "url": "https://www.ensemblgenomes.org/id/AT1G30470.2" } ] } }, { "isoform_ac": "F4I6B4-1", "url": "https://www.uniprot.org/uniprotkb/F4I6B2/entry#F4I6B4-1", "sequence": { "sequence": "MFWRMAGLSTASAVEAILDKDSFTLEDLLDEDEIIQECKALNGRLLNFLREKVQVEQLIRYIIEEPLEDVEKKRTFKFPFIACEIFTCEIEMILKTLVEDEEDHQEILKQLVDLIGITSIMEVLKRLVGTDEHLYSNYTSAMQWIEDTDVLEMIVDKFGSSESPEVHANAAEILCTVARYAPPGLATKLSSPSCTGRLLKHTLEDSRPKSVLVNSLSVCISLLDPKRFTLGTYHIYGRQLTHGSMVTNPETVEGMLGSLGDLLMLLNVSSAEGVLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKEVIRLGAVKRVLDLFFEYPYNNFLHHHVENVILSCMESKNSQLVDHLLSECNLIGSILEAEKDSTLTAGDSDKLQPTVPAEGKKPLRIGNIGHLTRISNKLLQLANSNVEIQSHLQENSKWVDWQTDVLSKRNTLENVYSWACGRPTSLHDRSRDSDDDDYHDRDYDVAALANNLSQAFRYGIYSNDDMDEAQGSMERDDEDVYFDDESAEVVISSLRLGDDQESDSLFTNSNWFAFDDDKAANERSMTSAASPSPNADGDGEDDDDVVIGEADEFNATAASSPPVDMETEDSTSKHPSENPSEPEPEKSPAWVEWRETSESTAPPSSNPEETTILSNGDVQIEKEDNDDDDDTDNKSAVKTPGVPGDETTEKLPDESGVEPTENSPKASGIEPTESSPKASGAEVTGNLRDSDPAESHADAKSSEPESPHGTKETEVAAEADTKETEEAVKEPEKVV", "length": 768, "header": "tr|F4I6B4-1|F4I6B4_ARATH Computationally mapped isoform of SIT4 phosphatase-associated family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4I6B2-1" }, "locus": { "chromosome": "1", "start_pos": 10779213, "end_pos": 10786697, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G30470.3", "url": "https://www.ensemblgenomes.org/id/AT1G30470.3" }, { "database": "Ensembl Peptide", "id": "AT1G30470.3", "url": "https://www.ensemblgenomes.org/id/AT1G30470.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 748, "start_aa": "Thr", "end_pos": 748, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr748", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 506, "end_pos": 506, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser506" }, { "start_pos": 509, "end_pos": 509, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser509" }, { "start_pos": 514, "end_pos": 514, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr514" }, { "start_pos": 731, "end_pos": 731, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser731" }, { "start_pos": 736, "end_pos": 736, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr736" }, { "start_pos": 739, "end_pos": 739, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ], "site_lbl": "Ser739" }, { "start_pos": 743, "end_pos": 743, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser743" }, { "start_pos": 748, "end_pos": 748, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr748" }, { "start_pos": 750, "end_pos": 750, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser750" }, { "start_pos": 751, "end_pos": 751, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6B2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6B2" }, { "database": 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CANONICAL=F4I6H7-1" }, "isoforms": [ { "isoform_ac": "F4I6H7-1", "url": "https://www.uniprot.org/uniprotkb/F4I6H7/entry#F4I6H7-1", "sequence": { "sequence": "MESTKDLEFYQELVAAKELEVAMSTTEERSSHNHNKRLIEALTTEMEQSFDNHLDQIRQGHHRARKMKEQELKSKPPDNSLRSTQSRKEDYLEWEKNMDEWFSYKNFLSEMRFVCALSHLTGNAYKWWLQEVEDRLYYKEPPITLWRDLKEFLRNKYALQVSNRSRKVSITAQGLAAQEKEQVLAPYSKKNPIAEQQLKDEILKILNAYNKPKKAKSTSQPKMVTKEVVIQKQSLKPSLESSVEPKHCHTMEHENDKTEGSTKEENHHLVSTTSQACRADYVSKITILNKNGPPYVSQPVLNRELPKEEPRELGEFTQVEAIMIHKQSPRAECNIFFKDKPPDATLPFKTRGCTLWRPIKKTNDREISTHHMSQSRDPRKDYQNQLWLKHIEECIEEPEMDISSFSTFHTYLWRPGELLDSSREEELVTNNALIQKEPPDPTPLPLVMMIPSTEHTVNLTQEPPDLEFLMSNLFERTGIGVVLMPKIDYPSNRTRRKSDNAYELELQGELDLRSNLFQVGEDDVIMESTKDLEFDQELVAAKELEPEEHFEAENELITEKEYGKMLS", "length": 567, "header": "tr|F4I6H7-1|F4I6H7_ARATH Isoform 1 of Retrotransposon gag domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I6H7-1" }, "locus": { "chromosome": "1", "start_pos": 15240553, "end_pos": 15244036, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G40129.1", "url": "https://www.ensemblgenomes.org/id/AT1G40129.1" }, { "database": "Ensembl Peptide", "id": "AT1G40129.1", "url": "https://www.ensemblgenomes.org/id/AT1G40129.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 442, "start_aa": "Thr", "end_pos": 442, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr442", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", 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"id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4I6H7", "url": "https://www.uniprot.org/uniprotkb/F4I6H7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 492, "end_pos": 494, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4I6H7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 567, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4I6H7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4I6H7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], 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"locus": {} } ], "crossref": [ { "id": "F4I6P0", "url": "https://alphafold.ebi.ac.uk/entry/F4I6P0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G64255", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G64255", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "2745850", "url": "https://www.ncbi.nlm.nih.gov/gene/2745850", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006564", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006564", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G64255", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G64255", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NCGDVYT", "url": "https://omabrowser.org/oma/group/NCGDVYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31973", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31973", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31973:SF195", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31973:SF195", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03108", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03108", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04434", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04434", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_974088", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974088", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G64255", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G64255", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I6P0", "url": "https://www.uniprot.org/uniprotkb/F4I6P0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I6P0-1", "url": "https://www.uniprot.org/uniprotkb/F4I6P0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEVNVPVFCCWNGCIKDGTNGIYYEGSNYRMTTVKGKTKFNELLDHLYQVTGLDRKRSKFGIIGRYPTDIQAFRVKYKPLPVVDDTSLETMLEITTKHPYIKDIDLYLEVESTSVGVIDPATCSSPSDILGGSSKRQKTDIHVKLERETDRNSESDGVVHLVDSSTLNKDSISGHVSKPCMSSLWLDDHDLRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHGLVEIIKYTGPHTCHPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCSSNGLLVDWKYDLFPNPNFASFCGVFWAFPQSIEGFQHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIREKVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNGRRYGIMEINTKALFAVCNAFEQAGHVVTGSVLLLFDELRSKFDKSFSCSRSSLNCGDVYTEPVMDKLEEFRTTFVTYSYIVTPLDNNAFQVATALDKGECIVQLSDCSCTCGDFQRYKFPCLHALAVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPEMSAWPEASGVPRLLPPVIPPSPPPSPPTYVSGTKCRTTPLATKKKS", "length": 750, "header": "tr|F4I6P0-1|F4I6P0_ARATH Isoform 1 of MuDR family transposase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I6P0-1" }, "isoforms": [ { "isoform_ac": "F4I6P0-1", "url": "https://www.uniprot.org/uniprotkb/F4I6P0/entry#F4I6P0-1", "sequence": { "sequence": "MSEVNVPVFCCWNGCIKDGTNGIYYEGSNYRMTTVKGKTKFNELLDHLYQVTGLDRKRSKFGIIGRYPTDIQAFRVKYKPLPVVDDTSLETMLEITTKHPYIKDIDLYLEVESTSVGVIDPATCSSPSDILGGSSKRQKTDIHVKLERETDRNSESDGVVHLVDSSTLNKDSISGHVSKPCMSSLWLDDHDLRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHGLVEIIKYTGPHTCHPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMSALCSSNGLLVDWKYDLFPNPNFASFCGVFWAFPQSIEGFQHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIREKVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNGRRYGIMEINTKALFAVCNAFEQAGHVVTGSVLLLFDELRSKFDKSFSCSRSSLNCGDVYTEPVMDKLEEFRTTFVTYSYIVTPLDNNAFQVATALDKGECIVQLSDCSCTCGDFQRYKFPCLHALAVCKKLKFNPLQYVDDCYTLERLKRTYATIFSHVPEMSAWPEASGVPRLLPPVIPPSPPPSPPTYVSGTKCRTTPLATKKKS", "length": 750, "header": "tr|F4I6P0-1|F4I6P0_ARATH Isoform 1 of MuDR family transposase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I6P0-1" }, "locus": { "chromosome": "1", "start_pos": 23844954, "end_pos": 23847206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G64255.1", "url": "https://www.ensemblgenomes.org/id/AT1G64255.1" }, { "database": "Ensembl Peptide", "id": "AT1G64255.1", "url": "https://www.ensemblgenomes.org/id/AT1G64255.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 397, "end_pos": 397, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I6P0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I6P0" } ], "site_lbl": "Tyr397" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I6P0", "url": "https://www.uniprot.org/uniprotkb/F4I6P0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I6P0", "url": "https://www.uniprot.org/uniprotkb/F4I6P0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G64255", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G64255", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4I6P0", "url": "https://www.uniprot.org/uniprotkb/F4I6P0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4I6P0", "url": "https://www.uniprot.org/uniprotkb/F4I6P0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4I6P0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 750, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4I6P0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4I6P0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4I6P0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6P0" }, { "id": "PS50966", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50966" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SWIM-type", "eco_id": "ECO_0000259", "start_pos": 632, "end_pos": 675, "start_aa": "Phe", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 397 ], "sequon_annotation_sites": [ { "start_pos": 461, "end_pos": 463 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"F4I6P4_ARATH", "mass": { "chemical_mass": 41575.0, "monoisotopic_mass": 41575.0 }, "refseq": { "ac": "NP_683467", "name": "F-box associated ubiquitination effector family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683467" }, "gene_names": [], "protein_names": [ { "name": "F-box associated ubiquitination effector family protein", "type": "synonym", "evidence": [ { "id": "NP_683467", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683467" }, { "id": "F4I6P4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6P4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I6P4", "url": "https://www.uniprot.org/uniprotkb/F4I6P4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4I6P4", "locus": {} } ], "crossref": [ { "id": "F4I6P4", "url": "https://alphafold.ebi.ac.uk/entry/F4I6P4", "database": "AlphaFoldDB", "categories": [] }, { "id": "842735", "url": "https://www.ncbi.nlm.nih.gov/gene/842735", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G64295", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G64295", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": 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"Protein" ] } ], "sequence": { "sequence": "MSSPVINQDTIQEVLSYLRGSEIGKLRLINKECNKRSYESWFVNLNLHRTNNISGYFLERYERGYKLDTSFFHERRDLDNKGVSIDFLPQGEVKIKACDARHGILLCYNDTRPIPEYIVCKPTTKQYQIIPNPKVRSCDKSLGLTVTGLQPFRYKIFRLSKSPGMTRNLRTFACEVFDSDSFMWKRLKNLRLPRTDGLILSNPVQASGFLHWRSWNHNVIRLCPKTETWSFLHTPNVGLFPELVSYEGKLGVIRHWINNNQEDVHRLWVLKSSFEKSWEKVKDIESIGVEHITWIPSNDVVMLSSWDHVCLYNLNTEKLNLVHTNKDFASYVCFPFCSDYERVDLDGRRNGPTNAN", "length": 356, "header": "tr|F4I6P4-1|F4I6P4_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I6P4-1" }, "isoforms": [ { "isoform_ac": "F4I6P4-1", "url": "https://www.uniprot.org/uniprotkb/F4I6P4/entry#F4I6P4-1", "sequence": { "sequence": 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[ { "name": "Homeodomain-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_176638", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176638" }, { "id": "F4I6S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I6S6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I6S6", "url": "https://www.uniprot.org/uniprotkb/F4I6S6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DUO3", "url": "https://www.uniprot.org/uniprotkb/F4I6S6", "locus": { "chromosome": "CP002684.1", "start_pos": 23983925, "end_pos": 23978613, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "AT1G64570", "url": "https://www.ensemblgenomes.org/id/AT1G64570" } ] } } ], "crossref": [ { "id": "F4I6S6", "url": "https://alphafold.ebi.ac.uk/entry/F4I6S6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G64570", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G64570", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "842765", "url": "https://www.ncbi.nlm.nih.gov/gene/842765", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052435", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052435", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G64570", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G64570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LPRQWRS", "url": "https://omabrowser.org/oma/group/LPRQWRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16088", "url": 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"length": 1239, "header": "tr|F4I6S6-1|F4I6S6_ARATH Isoform 1 of Homeodomain-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DUO3 PE=1 SV=1 CANONICAL=F4I6S6-1" }, "locus": { "chromosome": "1", "start_pos": 23978613, "end_pos": 23983925, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G64570.1", "url": "https://www.ensemblgenomes.org/id/AT1G64570.1" }, { "database": "Ensembl Peptide", "id": "AT1G64570.1", "url": "https://www.ensemblgenomes.org/id/AT1G64570.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, 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"database": "Ensembl Peptide", "id": "AT1G70650.2", "url": "https://www.ensemblgenomes.org/id/AT1G70650.2" } ] } }, { "isoform_ac": "F4I6V3-1", "url": "https://www.uniprot.org/uniprotkb/F4I6V2/entry#F4I6V3-1", "sequence": { "sequence": "MLRFFKTDHRLFHRIIGYTRPFHGLAKTQNAEIARPGLVDPSSHPWPEWLDLMGMLAKKGYFEESLIPLMSSKESNHIRTACLNFARHRFTLVRNLSKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAYAQARDDEGARTIDVMRLLLTYGLDSISPTVENRACQTKLVEDSVRKLLRESVAYSLTDFESAETETAGDELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKNIRCLRCDVFSEERLKQLKEEQKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQINPGEWECESCNYINFRRNSICLKCDHKRQKAANVTPDSKTVADRQSGVTKTWSFVEEESVKRCNGEEEEEEDGFMGFPVEGGRSNVSKSAEKREQWKLEMTQRIRSNGTKAKKDDNTKNETESKCYDRRRNELLGNISDDGEMDDWFVSKQDRST", "length": 466, "header": "tr|F4I6V3-1|F4I6V3_ARATH Computationally mapped isoform of Ran BP2/NZF zinc finger-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I6V2-1" }, "locus": { "chromosome": "1", "start_pos": 26638076, "end_pos": 26640342, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G70650.1", "url": "https://www.ensemblgenomes.org/id/AT1G70650.1" }, { "database": "Ensembl Peptide", "id": "AT1G70650.1", "url": "https://www.ensemblgenomes.org/id/AT1G70650.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 177, "start_aa": "Thr", "end_pos": 177, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr177", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", 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of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=RBGD1 PE=1 SV=1 CANONICAL=F4I906-1" }, "isoforms": [ { "isoform_ac": "F4I906-1", "url": "https://www.uniprot.org/uniprotkb/F4I906/entry#F4I906-1", "sequence": { "sequence": "MDYNSDRGYDDSYHHHVHDEQLPQSDFEVETFDDRRNGGAAVDTGGIQMKHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDNSFRSYGASGKYDQEDSYSGKANEDYSMYSGYGGYGGYGAYAGNSMVNPAGFYGYGGGYGYGYGYGGQMFNMGYGAGGYSHMGSGYGVAAAAAYGGGKSHGNGNNGSSSGKGNGTNGSGPDRYHPYQK", "length": 369, "header": "tr|F4I906-1|F4I906_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN=RBGD1 PE=1 SV=1 CANONICAL=F4I906-1" }, "locus": { "chromosome": "1", "start_pos": 6067153, "end_pos": 6069257, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G17640.3", "url": 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Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I906", "url": "https://www.uniprot.org/uniprotkb/F4I906" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I906", "url": "https://www.uniprot.org/uniprotkb/F4I906" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G17640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G17640", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF", "length": 378 }, "evidence": [ { "id": "F4I906", "url": "https://omabrowser.org/oma/group/F4I906/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4I954-1", "uniprot_ac": "F4I954", "uniprot_id": "F4I954_ARATH", "mass": { "chemical_mass": 12525.0, "monoisotopic_mass": 12525.0 }, "refseq": { "ac": "NP_001185077", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001185077" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4I954", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I954/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001185077", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001185077" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": 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"MFSIHMNEALGAQIEIRKLEETMVMRRNKKGNGFVTSKIDVPPSASQHCGGGKRFKNMATTNRHDDQFSPLPGGVSSSLCIRCVTTQRCVGAVGAPRSTYTCTIISKQCENIPGH", "length": 115, "header": "tr|F4I954-1|F4I954_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I954-1" }, "isoforms": [ { "isoform_ac": "F4I954-1", "url": "https://www.uniprot.org/uniprotkb/F4I954/entry#F4I954-1", "sequence": { "sequence": "MFSIHMNEALGAQIEIRKLEETMVMRRNKKGNGFVTSKIDVPPSASQHCGGGKRFKNMATTNRHDDQFSPLPGGVSSSLCIRCVTTQRCVGAVGAPRSTYTCTIISKQCENIPGH", "length": 115, "header": "tr|F4I954-1|F4I954_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I954-1" }, "locus": { "chromosome": "1", "start_pos": 8544248, "end_pos": 8545590, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G24148.1", "url": "https://www.ensemblgenomes.org/id/AT1G24148.1" }, { "database": "Ensembl Peptide", "id": "AT1G24148.1", "url": 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D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I9C1", "url": "https://www.uniprot.org/uniprotkb/F4I9C1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4I9C1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I9C1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", 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"length": 1161, "header": "tr|F4I9F1-1|F4I9F1_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I9F1-1" }, "locus": { "chromosome": "1", "start_pos": 11288378, "end_pos": 11293799, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G31540.2", "url": "https://www.ensemblgenomes.org/id/AT1G31540.2" }, { "database": "Ensembl Peptide", "id": "AT1G31540.2", "url": "https://www.ensemblgenomes.org/id/AT1G31540.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I9F1", "url": "https://www.uniprot.org/uniprotkb/F4I9F1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I9F1", "url": "https://www.uniprot.org/uniprotkb/F4I9F1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G31540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G31540", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4I9F1", "url": "https://www.uniprot.org/uniprotkb/F4I9F1" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "F4I9F1", "url": "https://www.uniprot.org/uniprotkb/F4I9F1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F4I9F1", "url": "https://www.uniprot.org/uniprotkb/F4I9F1" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F4I9F1", "url": "https://www.uniprot.org/uniprotkb/F4I9F1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "F4I9F1", "url": "https://www.uniprot.org/uniprotkb/F4I9F1" } ], "pmid": "" }, { 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"https://www.uniprot.org/uniprotkb/F4I9K2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMDSSKESSLIETHFLKPYVTSIDGAVAELPRHRLSVSSSDLNESFSRISFNGFWSAQPNFKSWAKKMEALHEPIWRKAGIFEAIKASMYKIRKNQSLLLALVEKWCPETKSFLFPWGEATITLEDVLVLLGFSVQGSPVFAPLESSEMRDSVEKLEKARLENRGQDGLVRQNLWVSSFLGRGDQMEHEAFLAFWLSQFVFPDMCRRSISTKVLPMAVRLARGERIAFAPAVLARLYRDLGQIQASAREKSTPNVTLKSLFKLVQLWAWERFKSTSPKARVIPKGEPRISRWHSQTSKNVRLNLVDFDWRPYTKPLQIWNPPRFYPEEAMWMTVDDNLDDGFVSFARCMRVSQLVGVGIVEDYYPNRVAMQFGLAQDLPGLVTDHSSFTEKEAWDGYNKSLDGLMLYIPSRVATTSVTERYRDWWLKSISKFFLDSSESTETFDASNTIDHYDNNDEDDELLPLGQVLQNFGESFLKKLERCRARRLAKNHRFKINKDKIGDGGASASTELPLSQLFKKEVMKRTSEHLKNKGRKRAREDDVSSMDHKDDDVTIAQMIKSRRNDECGSKGKKSSMVQRPSNENNSSDPLVDSNGGIIDISVSPSETRQTCDDELHVDRSKKEELVHEDEEKQRSNENLCSEAEKEEDIDERLKQRKLAIEEIALKLETRVMEVEKSLTMIRKWKTRGNQTNHRVSA", "length": 696, "header": "tr|F4I9K2-1|F4I9K2_ARATH Isoform 1 of Aminotransferase-like, plant mobile domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I9K2-1" }, "isoforms": [ { "isoform_ac": "F4I9K2-1", "url": "https://www.uniprot.org/uniprotkb/F4I9K2/entry#F4I9K2-1", "sequence": { "sequence": "MMDSSKESSLIETHFLKPYVTSIDGAVAELPRHRLSVSSSDLNESFSRISFNGFWSAQPNFKSWAKKMEALHEPIWRKAGIFEAIKASMYKIRKNQSLLLALVEKWCPETKSFLFPWGEATITLEDVLVLLGFSVQGSPVFAPLESSEMRDSVEKLEKARLENRGQDGLVRQNLWVSSFLGRGDQMEHEAFLAFWLSQFVFPDMCRRSISTKVLPMAVRLARGERIAFAPAVLARLYRDLGQIQASAREKSTPNVTLKSLFKLVQLWAWERFKSTSPKARVIPKGEPRISRWHSQTSKNVRLNLVDFDWRPYTKPLQIWNPPRFYPEEAMWMTVDDNLDDGFVSFARCMRVSQLVGVGIVEDYYPNRVAMQFGLAQDLPGLVTDHSSFTEKEAWDGYNKSLDGLMLYIPSRVATTSVTERYRDWWLKSISKFFLDSSESTETFDASNTIDHYDNNDEDDELLPLGQVLQNFGESFLKKLERCRARRLAKNHRFKINKDKIGDGGASASTELPLSQLFKKEVMKRTSEHLKNKGRKRAREDDVSSMDHKDDDVTIAQMIKSRRNDECGSKGKKSSMVQRPSNENNSSDPLVDSNGGIIDISVSPSETRQTCDDELHVDRSKKEELVHEDEEKQRSNENLCSEAEKEEDIDERLKQRKLAIEEIALKLETRVMEVEKSLTMIRKWKTRGNQTNHRVSA", "length": 696, "header": "tr|F4I9K2-1|F4I9K2_ARATH Isoform 1 of Aminotransferase-like, plant mobile domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I9K2-1" }, "locus": { "chromosome": "1", "start_pos": 19113085, "end_pos": 19115393, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G51538.1", "url": "https://www.ensemblgenomes.org/id/AT1G51538.1" }, { "database": "Ensembl Peptide", "id": "AT1G51538.1", "url": "https://www.ensemblgenomes.org/id/AT1G51538.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 543, "end_pos": 543, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I9K2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I9K2" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser543" }, { "start_pos": 544, "end_pos": 544, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I9K2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I9K2" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser544" }, { "start_pos": 568, "end_pos": 568, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4I9K2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I9K2" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser568" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I9K2", "url": "https://www.uniprot.org/uniprotkb/F4I9K2" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4I9K2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I9K2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4I9K2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I9K2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "F4I9K2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4I9K2" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I9K2", "url": "https://www.uniprot.org/uniprotkb/F4I9K2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G51538", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G51538", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4I9K2", "url": "https://www.uniprot.org/uniprotkb/F4I9K2" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "F4I9K2", "url": "https://www.uniprot.org/uniprotkb/F4I9K2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I9N5", "url": "https://www.uniprot.org/uniprotkb/F4I9N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I9N5-1", "url": "https://www.uniprot.org/uniprotkb/F4I9N5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FVS5", "url": "https://www.uniprot.org/uniprotkb/Q9FVS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9FVS5-1", "url": "https://www.uniprot.org/uniprotkb/Q9FVS5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTILSLANDDFHRVFLSFRGDQLRYSFVSHLLDAFERHGILCFVDKDELRGKTMTNLFVRIKESKIALVIFSSRYAESSWCMDELVKMKKRADKGKLQVIPIFYKVRARDVRGQTGEFGETFWALARTSRGDQIMEWKEALECISNKMGLSLGDKSSEADFIKEIVKEVKRVVAEIGCQATENHQCINFLPN", "length": 192, "header": "tr|F4I9N5-1|F4I9N5_ARATH Isoform 1 of Toll-Interleukin-Resistance (TIR) domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I9N5-1" }, "isoforms": [ { "isoform_ac": "F4I9N4-1", "url": "https://www.uniprot.org/uniprotkb/F4I9N5/entry#F4I9N4-1", "sequence": { "sequence": "MEQGKKSERSMKKKQRRRWKKREKTREDVNKDKDELRGKTMTNLFVRIKESKIALVIFSSRYAESSWCMDELVKMKKRADKGKLQVIPIFYKVRARDVRGQTGEFGETFWALARTSRGDQIMEWKEALECISNKMGLSLGDKRYS", "length": 145, "header": "tr|F4I9N4-1|F4I9N5_ARATH Computationally mapped isoform of Toll-Interleukin-Resistance (TIR) domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I9N5-1" }, "locus": { "chromosome": "1", "start_pos": 21425481, "end_pos": 21427349, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G57850.2", "url": "https://www.ensemblgenomes.org/id/AT1G57850.2" }, { "database": "Ensembl Peptide", "id": "AT1G57850.2", "url": "https://www.ensemblgenomes.org/id/AT1G57850.2" } ] } }, { "isoform_ac": "F4I9N5-1", "url": "https://www.uniprot.org/uniprotkb/F4I9N5/entry#F4I9N5-1", "sequence": { "sequence": "MTILSLANDDFHRVFLSFRGDQLRYSFVSHLLDAFERHGILCFVDKDELRGKTMTNLFVRIKESKIALVIFSSRYAESSWCMDELVKMKKRADKGKLQVIPIFYKVRARDVRGQTGEFGETFWALARTSRGDQIMEWKEALECISNKMGLSLGDKSSEADFIKEIVKEVKRVVAEIGCQATENHQCINFLPN", "length": 192, "header": "tr|F4I9N5-1|F4I9N5_ARATH Isoform 1 of Toll-Interleukin-Resistance (TIR) domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I9N5-1" }, "locus": { "chromosome": "1", "start_pos": 21426540, "end_pos": 21428078, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G57850.1", "url": "https://www.ensemblgenomes.org/id/AT1G57850.1" }, { "database": "Ensembl Peptide", "id": "AT1G57850.1", "url": "https://www.ensemblgenomes.org/id/AT1G57850.1" } ] } }, { "isoform_ac": "Q9FVS5-1", "url": "https://www.uniprot.org/uniprotkb/F4I9N5/entry#Q9FVS5-1", "sequence": { "sequence": "MTILSLANDDFHRVFLSFRGDQLRYSFVSHLLDAFERHGILCFVDKDELRGKTMTNLFVRIKESKIALVIFSSRYAESSWCMDELVKMKKRADKGKLQVIPIFYKVRARDVRGQTGEFGETFWALARTSRGDQIMEWKEALECISNKMGLSLGDKRYS", "length": 158, "header": "tr|Q9FVS5-1|Q9FVS5_ARATH Computationally mapped isoform of Toll-Interleukin-Resistance (TIR) domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I9N5-1" }, "locus": { "chromosome": "1", "start_pos": 21426540, "end_pos": 21427411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G57850.3", "url": "https://www.ensemblgenomes.org/id/AT1G57850.3" }, { "database": "Ensembl Peptide", "id": "AT1G57850.3", "url": "https://www.ensemblgenomes.org/id/AT1G57850.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I9N4", "url": "https://www.uniprot.org/uniprotkb/F4I9N4" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I9N4", "url": "https://www.uniprot.org/uniprotkb/F4I9N4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G57850", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G57850", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F4I9N5", "url": "https://www.uniprot.org/uniprotkb/F4I9N5" } ], "pmid": "" }, { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F4I9N5", "url": "https://www.uniprot.org/uniprotkb/F4I9N5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4I9N5", "url": "https://www.uniprot.org/uniprotkb/F4I9N5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4I9N5", "url": "https://www.uniprot.org/uniprotkb/F4I9N5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4I9N5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 192, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4I9N5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4I9N5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4I9N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I9N5" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 173, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4I9P7-1", "uniprot_ac": "F4I9P7", "uniprot_id": "F4I9P7_ARATH", "mass": { "chemical_mass": 66002.0, "monoisotopic_mass": 66002.0 }, "refseq": {}, "gene_names": [ { "name": "T15M6.22", "type": "synonym", "evidence": [ { "id": "F4I9P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I9P7" } ] }, { "name": "T15M6_22", "type": "synonym", "evidence": [ { "id": "F4I9P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I9P7" } ] } ], "protein_names": [ { "name": "DNA-binding bromodomain-containing protein", "type": "synonym", "evidence": [ { "id": "F4I9P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I9P7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I9P7", "url": "https://www.uniprot.org/uniprotkb/F4I9P7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4I9P7", "locus": {} } ], "crossref": [ { "id": "F4I9P7", "url": "https://alphafold.ebi.ac.uk/entry/F4I9P7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G58025", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G58025", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd05494", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05494", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "842169", "url": "https://www.ncbi.nlm.nih.gov/gene/842169", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001487", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001487", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G58025", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G58025", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QHDMEGN", "url": "https://omabrowser.org/oma/group/QHDMEGN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47809", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47809", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47809:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47809:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00439", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00439", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G58025", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G58025", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4I9P7", "url": "https://www.uniprot.org/uniprotkb/F4I9P7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I9P7-1", "url": "https://www.uniprot.org/uniprotkb/F4I9P7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I9P8", "url": "https://www.uniprot.org/uniprotkb/F4I9P8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I9P8-1", "url": "https://www.uniprot.org/uniprotkb/F4I9P8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I9P9", "url": "https://www.uniprot.org/uniprotkb/F4I9P9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4I9P9-1", "url": "https://www.uniprot.org/uniprotkb/F4I9P9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRKRGHKKGKKSKTINEQGNLNESTENAENQTSEHSSEAPVECENSELESKMEVDAPSPIAGSVDLADNIAAKSVARVKVKLKTSKAPEPNETLRDDIDKSSSQAVLEKPVVPVEKKEEFVPRLPERKPVFLNVYRKTKGIRIKSSKAVDGSSSVTEKSATDTVKVQDVVVGQKDTKTSEENSQASKKEAEIATISLQKEEKKTDQNLRYNKQELEDSLIVIKKIMKMEAADPFNVPVNPEALGIPDYFDIIKTPMDFGTICNNFEKGNKYMNSEDVYKDVNYIWNNCSKYNKKGDYIVDLMKRVKKNFMKYWTSAGLYTEQSAAENTEDGGKASTKQKSHKRHGRHHKSDCMCAICVLKRRKRERERDSGAQEESSPAGSPSVDNSSVNMGEDMDIDVDKKPEQEKTEIVELDSPVSKTQRVIENKQEVEEEENVEVESENKTKANVEDKTQSIDRSMEETGDEPVNSAAEKLVVLASLEGPKSTQNEEEEKEKRLQEQKKRLELERKEWRMKMQEKFQVRNPQLLSLCETLFPNDNNHNSVWNGPHSLFRRRGGSNRSSALHKAMNLVIFILFELPPLQ", "length": 582, "header": "tr|F4I9P7-1|F4I9P7_ARATH Isoform 1 of DNA-binding bromodomain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I9P7-1" }, "isoforms": [ { "isoform_ac": "F4I9P7-1", "url": "https://www.uniprot.org/uniprotkb/F4I9P7/entry#F4I9P7-1", "sequence": { "sequence": "MKRKRGHKKGKKSKTINEQGNLNESTENAENQTSEHSSEAPVECENSELESKMEVDAPSPIAGSVDLADNIAAKSVARVKVKLKTSKAPEPNETLRDDIDKSSSQAVLEKPVVPVEKKEEFVPRLPERKPVFLNVYRKTKGIRIKSSKAVDGSSSVTEKSATDTVKVQDVVVGQKDTKTSEENSQASKKEAEIATISLQKEEKKTDQNLRYNKQELEDSLIVIKKIMKMEAADPFNVPVNPEALGIPDYFDIIKTPMDFGTICNNFEKGNKYMNSEDVYKDVNYIWNNCSKYNKKGDYIVDLMKRVKKNFMKYWTSAGLYTEQSAAENTEDGGKASTKQKSHKRHGRHHKSDCMCAICVLKRRKRERERDSGAQEESSPAGSPSVDNSSVNMGEDMDIDVDKKPEQEKTEIVELDSPVSKTQRVIENKQEVEEEENVEVESENKTKANVEDKTQSIDRSMEETGDEPVNSAAEKLVVLASLEGPKSTQNEEEEKEKRLQEQKKRLELERKEWRMKMQEKFQVRNPQLLSLCETLFPNDNNHNSVWNGPHSLFRRRGGSNRSSALHKAMNLVIFILFELPPLQ", "length": 582, "header": "tr|F4I9P7-1|F4I9P7_ARATH Isoform 1 of DNA-binding bromodomain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I9P7-1" }, "locus": { "chromosome": "1", "start_pos": 21457667, "end_pos": 21462243, 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"tr|F4I9P8-1|F4I9P8_ARATH Computationally mapped isoform of DNA-binding bromodomain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4I9P7-1" }, "locus": { "chromosome": "1", "start_pos": 21458045, "end_pos": 21462196, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G58025.1", "url": "https://www.ensemblgenomes.org/id/AT1G58025.1" }, { "database": "Ensembl Peptide", "id": "AT1G58025.1", "url": "https://www.ensemblgenomes.org/id/AT1G58025.1" } ] } }, { "isoform_ac": "F4I9P9-1", "url": "https://www.uniprot.org/uniprotkb/F4I9P7/entry#F4I9P9-1", "sequence": { "sequence": 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"MAPLLPLLVEDPEEAKIQKLVHGYFAEGDYIKALEVIEDSISTRGKEKVPAMVHYLQGCFFYEQGTKTENSDMKFPFLLASVECFTEDCGVHAYSAIALLELGKLIGSASFYKKALNIAKEGLSFIASFGGLNLSEENTKSSLENVVLVAESMIPKLQGSVRSDSDTAATEAMIEAADSMVLLQKMSEPKLRESKNIRDSIRSDLETAAGKRLRSYWASMDVESKRNFMKVSIAKLTAYVERLYGRVGLDALEQVLDSARINRKWKFWMCRSCSQKFYYPKKFRSHLEQEHAAKFKPSTTKHMAQRVDEVWAGMISVAGWEPVDVVAAVEMIKTQLESVKEFVYENGWSKNWPLAVDEERSKLLKELQSLLLLFQERKILSCSIRDWMMQLTVKHLAQLEISEHTLSSKCRLVETPQSICFLECHELNQILDLLKRINCERVDGTELVSNATDSLCGRLRVKEKIEFDHEFSFMLLDKRLLRGKIASFDDEGIIDVCDHNVHYTKTHPQGDDTITWLLDYPLIDESFEFPRSIRAHNLEICVAVLRAIHFTCATLGTKYAKKLQILNYDAALIDAKNLCILEDERRKNVPEDQWNTYASLLCDKCEERLVIDAGDSHTTKLCLCAVRDVLEKASHPTFEFSDLEDCMTLIHGHKNLNDDTVLKSIDLLKSVVTNKVPVADSKILLIENSRTNLLNDLVKLSVFDYRSYILHLLKRYQRDELDEIVDMDAKTKLAAAQAEHLSEEKQEKGKKSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPKVTPPSPKSTEEDSMEPEDTLSSERGRLEISSNTKSQDETAKDMENMPGEDLLSENLESAHKKVTRYNSALDMTLKALLNIKVLQEDLVHNRQLFHGNLEEQVPCALKDFFSAVVSEQIKEDELYSYLLSNLLASLEEVHSLSSDADEVVVTILEFLHWWKSPEKESLVTRLFTLEEYERMRCTKCRRNPNYPEQSSYGIVMAANSIRNLKCAFGNMKFEEILTVIRMEDEMICDVKTGGCGKTNFVHHVLSRCPPIFTIVLEWEKNETETEISETAKALAWEIDISRLYEGLEEPNTNYRLVSMIGCGEEGEHICMAYKTNRWVSLRHEALLEEGVGNWKNVVRICGERRVRPEILFYEAAYK", "length": 1147, "header": "tr|F4I9U7-1|F4I9U7_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I9U7-1" }, "isoforms": [ { "isoform_ac": "F4I9U7-1", "url": "https://www.uniprot.org/uniprotkb/F4I9U7/entry#F4I9U7-1", "sequence": { "sequence": "MAPLLPLLVEDPEEAKIQKLVHGYFAEGDYIKALEVIEDSISTRGKEKVPAMVHYLQGCFFYEQGTKTENSDMKFPFLLASVECFTEDCGVHAYSAIALLELGKLIGSASFYKKALNIAKEGLSFIASFGGLNLSEENTKSSLENVVLVAESMIPKLQGSVRSDSDTAATEAMIEAADSMVLLQKMSEPKLRESKNIRDSIRSDLETAAGKRLRSYWASMDVESKRNFMKVSIAKLTAYVERLYGRVGLDALEQVLDSARINRKWKFWMCRSCSQKFYYPKKFRSHLEQEHAAKFKPSTTKHMAQRVDEVWAGMISVAGWEPVDVVAAVEMIKTQLESVKEFVYENGWSKNWPLAVDEERSKLLKELQSLLLLFQERKILSCSIRDWMMQLTVKHLAQLEISEHTLSSKCRLVETPQSICFLECHELNQILDLLKRINCERVDGTELVSNATDSLCGRLRVKEKIEFDHEFSFMLLDKRLLRGKIASFDDEGIIDVCDHNVHYTKTHPQGDDTITWLLDYPLIDESFEFPRSIRAHNLEICVAVLRAIHFTCATLGTKYAKKLQILNYDAALIDAKNLCILEDERRKNVPEDQWNTYASLLCDKCEERLVIDAGDSHTTKLCLCAVRDVLEKASHPTFEFSDLEDCMTLIHGHKNLNDDTVLKSIDLLKSVVTNKVPVADSKILLIENSRTNLLNDLVKLSVFDYRSYILHLLKRYQRDELDEIVDMDAKTKLAAAQAEHLSEEKQEKGKKSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPKVTPPSPKSTEEDSMEPEDTLSSERGRLEISSNTKSQDETAKDMENMPGEDLLSENLESAHKKVTRYNSALDMTLKALLNIKVLQEDLVHNRQLFHGNLEEQVPCALKDFFSAVVSEQIKEDELYSYLLSNLLASLEEVHSLSSDADEVVVTILEFLHWWKSPEKESLVTRLFTLEEYERMRCTKCRRNPNYPEQSSYGIVMAANSIRNLKCAFGNMKFEEILTVIRMEDEMICDVKTGGCGKTNFVHHVLSRCPPIFTIVLEWEKNETETEISETAKALAWEIDISRLYEGLEEPNTNYRLVSMIGCGEEGEHICMAYKTNRWVSLRHEALLEEGVGNWKNVVRICGERRVRPEILFYEAAYK", "length": 1147, "header": "tr|F4I9U7-1|F4I9U7_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I9U7-1" }, "locus": { "chromosome": "1", "start_pos": 24191179, "end_pos": 24196320, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G65120.2", "url": "https://www.ensemblgenomes.org/id/AT1G65120.2" }, { "database": "Ensembl Peptide", "id": "AT1G65120.2", "url": "https://www.ensemblgenomes.org/id/AT1G65120.2" } ] } }, { "isoform_ac": "F4I9U8-1", "url": "https://www.uniprot.org/uniprotkb/F4I9U7/entry#F4I9U8-1", "sequence": { "sequence": "MAPLLPLLVEDPEEAKIQKLVHGYFAEGDYIKALEVIEDSISTRGKEKVPAMVHYLQGCFFYEQGTKTENSDMKFPFLLASVECFTEDCGVHAYSAIALLELGKLIGSASFYKKALNIAKEGLSFIASFGGLNLSEENTKSSLENVVLVAESMIPKLQGSVRSDSDTAATEAMIEAADSMVLLQKMSEPKLRESKNIRDSIRSDLETAAGKRLRSYWASMDVESKRNFMKVSIAKLTAYVERLYGRVGLDALEQVLDSARINRKWKFWMCRSCSQKFYYPKKFRSHLEQEHAAKFKPSTTKHMAQRVDEVWAGMISVAGWEPVDVVAAVEMIKTQLESVKEFVYENGWSKNWPLAVDEERSKLLKELQSLLLLFQERKILSCSIRDWMMQLTVKHLAQLEISEHTLSSKCRLVETPQSICFLECHELNQILDLLKRINCERVDGTELVSNATDSLCGRLRVKEKIEFDHEFSFMLLDKRLLRGKIASFDDEGIIDVCDHNVHYTKTHPQGDDTITWLLDYPLIDESFEFPRSIRAHNLEICVAVLRAIHFTCATLGTKYAKKLQILNYDAALIDAKNLCILEDERRKNVPEDQWNTYASLLCDKCEERLVIDAGDSHTTKLCLCAVRDVLEKASHPTFEFSDLEDCMTLIHGHKNLNDDTVLKSIDLLKSVVTNKVPVADSKILLIENSRTNLLNDLVKLSVFDYRSYILHLLKRYQRDELDEIVDMDAKTKLAAAQAEHLSEEKQEKGKKSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPKVTPPSPKSTEEDSMEPEDTLSSERGRLEISSNTKSQDETAKDMENMPGEDLLSENLESAHKKVTRYNSALDMTLKALLNIKVLQEDLVHNRQLFHGNLEEQVPCALKDFFSAVVSEQIKEDELYSYLLSNLLASLEEVHSLSSDADEVVVTILEFLHWWKSPEKESLVTRLFTLEEYERMRCTKCRRNPNYPEQSSYGIVMAANSIRNLKCAFGNMKFEEILTVIRMEDEMICDVKTGGCGKTNFVHHVLSRCPPIFTIVLEWEKNETETEISETAKALAWEIDISRLYEGLEEPNTNYRLVSMVYLKQGHKHFCYLFFCISSLLQSRNMKNADWLW", "length": 1121, "header": "tr|F4I9U8-1|F4I9U8_ARATH Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4I9U7-1" }, "locus": { "chromosome": "1", "start_pos": 24191348, "end_pos": 24196337, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G65120.1", "url": "https://www.ensemblgenomes.org/id/AT1G65120.1" }, { "database": "Ensembl Peptide", "id": "AT1G65120.1", "url": "https://www.ensemblgenomes.org/id/AT1G65120.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4I9U7", "url": "https://www.uniprot.org/uniprotkb/F4I9U7" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4I9U7", "url": "https://www.uniprot.org/uniprotkb/F4I9U7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G65120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G65120", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4I9U7", "url": "https://www.uniprot.org/uniprotkb/F4I9U7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein deubiquitination", "id": "GO:0016579", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016579", "evidence": [ { "database": "UniProtKB", "id": "F4I9U7", "url": "https://www.uniprot.org/uniprotkb/F4I9U7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F4I9U7", "url": "https://www.uniprot.org/uniprotkb/F4I9U7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1050, "end_pos": 1052, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 450, "end_pos": 452, "annotation": "n_glycosylation_sequon" }, { "start_pos": 759, "end_pos": 761, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4I9U7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1147, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4I9U7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4I9U7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4I9U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I9U7" }, { "id": "PS00028", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00028" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 270, "end_pos": 291, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1050, "end_pos": 1052 }, { "start_pos": 133, "end_pos": 135 }, { "start_pos": 450, "end_pos": 452 }, { "start_pos": 759, "end_pos": 761 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4I9V0-1", "uniprot_ac": "F4I9V0", "uniprot_id": "F4I9V0_ARATH", "mass": { "chemical_mass": 36760.0, "monoisotopic_mass": 36760.0 }, "refseq": { "ac": "NP_176693", "name": "Ubiquitin carboxyl-terminal hydrolase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176693" }, "gene_names": [ { "name": "T23K8.5", "type": "synonym", "evidence": [ { "id": "NP_176693", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176693" }, { "id": "F4I9V0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I9V0" } ] }, { "name": "T23K8_5", "type": "synonym", "evidence": [ { "id": "NP_176693", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176693" }, { "id": "F4I9V0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I9V0" } ] } ], "protein_names": [ { "name": "Ubiquitin carboxyl-terminal hydrolase family protein", "type": "synonym", "evidence": [ { "id": "NP_176693", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176693" }, { "id": "F4I9V0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4I9V0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4I9V0", "url": "https://www.uniprot.org/uniprotkb/F4I9V0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4I9V0", "locus": {} } ], "crossref": [ { "id": "F4I9V0", "url": "https://alphafold.ebi.ac.uk/entry/F4I9V0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G65140", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G65140", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "842821", "url": "https://www.ncbi.nlm.nih.gov/gene/842821", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G65140", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G65140", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LWKISVF", 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"id": "F4IA30", "url": "https://www.uniprot.org/uniprotkb/F4IA30" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IA30", "url": "https://www.uniprot.org/uniprotkb/F4IA30" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G71780", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G71780", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IA60", "locus": {} } ], "crossref": [ { "id": "F4IA60", "url": "https://alphafold.ebi.ac.uk/entry/F4IA60", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G78230", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G78230", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "844159", "url": "https://www.ncbi.nlm.nih.gov/gene/844159", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G78230", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G78230", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FGKVESW", "url": "https://omabrowser.org/oma/group/FGKVESW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15454:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15454:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_177947", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_177947", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G78230", "url": 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"MWLFCMFCHKHVHFIHPLLLLLLLSSVFCPLSLFSGCGRLYLVKHNLKTSAAIFNSGRHIGGFDCGRIKKCFLFFRRRFFFYIHRFGALATSNRLRLISKMKILPCFGFIRRKKNKGNSKPQKTQRILQIRLEEPVKPLENDEPNNKDSPIKHESYDGEDERDDKDSTNREFSKFHVHERAVESVKSKEEVTDTSENGDDNDEDEGGHVSDPGLGKTTAWVTSPKLKRSCSTLSKFNGRFHGSDLHDLKETVPVSNESVRSHRSADRVMLKKHSSMQILPSGSRRLWWKLFLWSHRNLHKHRVSLKSQPLNKNQQSGYTSDFAEHNQSSHEEESTNYCADFTNQSSNLWPHHNQWVAFSAESSSMKRVDEWVRGLDVETVVPVNEDKDVLAIFPTSPNTERSPLGNVVQSGNVSEAIVHANSLIQSLSKSSSVAHISSIGLKAIPSISHFTSLKSIDLSNNFIVQITPASLPKGLHALNLSKNKISVIEGLRDLTRLRVLDLSYNRISRIGQGLSNCTLIKELYLAGNKISNVEGLHRLLKLIVLDLSFNKIATTKAIGQLVANYNSLVALNILGNPIQNNVGEDQLRKTVSSLLPKLVYHNKQLIKPQRAREVLKDSVARAAFGGGDSLHHRRKRTSTKSVVGSASPSVHHRGHIAKGRGSKNRSQRQLRKTSAAGTPSH", "length": 681, "header": "tr|F4IA60-1|F4IA60_ARATH Isoform 1 of Outer arm dynein light chain 1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IA60-1" }, "isoforms": [ { "isoform_ac": "F4IA60-1", "url": "https://www.uniprot.org/uniprotkb/F4IA60/entry#F4IA60-1", "sequence": { "sequence": 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"MTLSIVSFPICGRFTLIWFLTALVSVSCNPGVFNVKYRYPRLQGSLTALKEHDDRRQLTILAGIDLPLGGTGRPDIPGLYYAKIGIGTPAKSYYVQVDTGSDIMWVNCIQCKQCPRRSTLGIELTLYNIDESDSGKLVSCDDDFCYQISGGPLSGCKANMSCPYLEIYGDGSSTAGYFVKDVVQYDSVAGDLKTQTANGSVIFGCGARQSGDLDSSNEEALDGILGFGKANSSMISQLASSGRVKKIFAHCLDGRNGGGIFAIGRVVQPKVNMTPLVPNQPHYNVNMTAVQVGQEFLTIPADLFQPGDRKGAIIDSGTTLAYLPEIIYEPLVKKITSQEPALKVHIVDKDYKCFQYSGRVDEGFPNVTFHFENSVFLRVYPHDYLFPHEGMWCIGWQNSAMQSRDRRNMTLLGDLVLSNKLVLYDLENQLIGWTEYNCSSSIKVKDEGTGTVHLVGSHFISSALPLDTSMCLLFSLLLLMTLFLL", "length": 485, "header": "tr|F4IAD5-1|F4IAD5_ARATH Isoform 1 of Eukaryotic aspartyl protease family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IAD5-1" }, "isoforms": [ { "isoform_ac": "F4IAD5-1", "url": "https://www.uniprot.org/uniprotkb/F4IAD5/entry#F4IAD5-1", "sequence": { "sequence": "MTLSIVSFPICGRFTLIWFLTALVSVSCNPGVFNVKYRYPRLQGSLTALKEHDDRRQLTILAGIDLPLGGTGRPDIPGLYYAKIGIGTPAKSYYVQVDTGSDIMWVNCIQCKQCPRRSTLGIELTLYNIDESDSGKLVSCDDDFCYQISGGPLSGCKANMSCPYLEIYGDGSSTAGYFVKDVVQYDSVAGDLKTQTANGSVIFGCGARQSGDLDSSNEEALDGILGFGKANSSMISQLASSGRVKKIFAHCLDGRNGGGIFAIGRVVQPKVNMTPLVPNQPHYNVNMTAVQVGQEFLTIPADLFQPGDRKGAIIDSGTTLAYLPEIIYEPLVKKITSQEPALKVHIVDKDYKCFQYSGRVDEGFPNVTFHFENSVFLRVYPHDYLFPHEGMWCIGWQNSAMQSRDRRNMTLLGDLVLSNKLVLYDLENQLIGWTEYNCSSSIKVKDEGTGTVHLVGSHFISSALPLDTSMCLLFSLLLLMTLFLL", "length": 485, "header": "tr|F4IAD5-1|F4IAD5_ARATH Isoform 1 of Eukaryotic aspartyl protease family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IAD5-1" }, "locus": { "chromosome": "1", "start_pos": 1762734, "end_pos": 1766283, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G05840.1", "url": "https://www.ensemblgenomes.org/id/AT1G05840.1" }, { "database": "Ensembl Peptide", "id": "AT1G05840.1", "url": "https://www.ensemblgenomes.org/id/AT1G05840.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IAD5", "url": "https://www.uniprot.org/uniprotkb/F4IAD5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IAD5", "url": "https://www.uniprot.org/uniprotkb/F4IAD5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G05840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G05840", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F4IAD5", "url": "https://www.uniprot.org/uniprotkb/F4IAD5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4IAD5", "url": "https://www.uniprot.org/uniprotkb/F4IAD5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F4IAD5", "url": "https://www.uniprot.org/uniprotkb/F4IAD5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "aspartic-type endopeptidase activity", "id": "GO:0004190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004190", "evidence": [ { "database": "UniProtKB", "id": "F4IAD5", "url": "https://www.uniprot.org/uniprotkb/F4IAD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IAD5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 485, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IAD5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IAD5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IAD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAD5" }, { "id": "PS51767", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51767" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase A1", "eco_id": "ECO_0000259", "start_pos": 80, "end_pos": 434, "start_aa": "Tyr", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 198, "end_pos": 200 }, { "start_pos": 231, "end_pos": 233 }, { "start_pos": 272, "end_pos": 274 }, { "start_pos": 286, "end_pos": 288 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 408, "end_pos": 410 }, { "start_pos": 437, "end_pos": 439 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IAF6-1", "uniprot_ac": "F4IAF6", "uniprot_id": "F4IAF6_ARATH", "mass": { "chemical_mass": 111442.0, "monoisotopic_mass": 111442.0 }, "refseq": {}, "gene_names": [ { "name": "T21E18.21", "type": "synonym", "evidence": [ { "id": "F4IAF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAF6" } ] }, { "name": "T21E18_21", "type": "synonym", "evidence": [ { "id": "F4IAF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAF6" } ] } ], "protein_names": [ { "name": "ARM repeat superfamily protein", "type": "synonym", "evidence": [ { "id": "F4IAF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAF6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IAF6", "url": "https://www.uniprot.org/uniprotkb/F4IAF6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IAF6", "locus": {} } ], "crossref": [ { "id": "F4IAF6", "url": "https://alphafold.ebi.ac.uk/entry/F4IAF6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G05960", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G05960", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "837106", "url": "https://www.ncbi.nlm.nih.gov/gene/837106", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G05960", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G05960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKQQKMA", "url": "https://omabrowser.org/oma/group/GKQQKMA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46087", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46087", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46087:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46087:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21052", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21052", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G05960", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G05960", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IAF5", "url": "https://www.uniprot.org/uniprotkb/F4IAF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IAF5-1", "url": "https://www.uniprot.org/uniprotkb/F4IAF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IAF6", "url": "https://www.uniprot.org/uniprotkb/F4IAF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IAF6-1", "url": "https://www.uniprot.org/uniprotkb/F4IAF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVMSRRVLPACGNLCFFCPSLRARSRHPVKRYKKMLAEIFPRNQEAEPNDRKIGKLCEYASRNPLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKEQISSEIMLTFFFLVARSFTFEFLPLFSCSLLSIVRTLLEQTKEEEVQILGCNTLVDFISLQTVNSHMFNLEGLIPKLCQLAQEMGDDERSLQLRSAGMQALAFMVSFIGEHSQLSMDLDMIISVILENYMDLEKGQEDTKEVDQISDTKIPNMTKKVSFKPNPVTDYKLENMDISKSPSYWSMVCLCNIAKLAKETTTVRRVLEPLLTAFDSGDYWSPQKGVASSVLLFLQSRLEESGENCHVLVSSLIKHLDHKNVIKQQGLQINMVNVATCLALHAKQQASGAMTAVIADLIKHLRKCLQNAAESDVSVDKTKQNSDLQHALENCIAELSNKVGDAGPILDMFAVVLETISTNVVLSRTTASAILRAAHIVSVVPNVSYHKKVFPDALFHQLLLAMSHADCTTRVEAHNIFSVVLLGTLRLPWSDQHKETSEAVSGSLSVDGICTVRNQEEEKEKVEKSLNSELCKDVNHISRPSVSGQTSQQLSCQSLDSLKDLDDGIKSLCSLRLSSHQVNMLLSSLWIQATSTDNTPENFEAMASTYQITLLFSLAKRSNHMALVQCFQLAFSLRNLSLNQDGGMQHSRRRSIFTFASYMLIFGAKISNILELVPIIKESLTAQMVDPYLVLEGDIRLRAVCSGFPQEETYGSDKDDSAALNSSVIVTDDRRLKEIVITHFTSKLQTLSEEEQLNLRKEIQSDFSLDDAHSLGGQLFTDTPGPSSPLNQTELPAFEEVELSDIAAFEGISPGASGSQSGHRTSLSTNTNPVDVLSVNELLESVSETARQVASLPVSSIPVPYDQMMNQCEALVTGKQQKMSVLRSFKPQATKAITSEDNEKDEQYLLKETEEAGEDDEKAIIVADVQPQGQLGFFSQEVPQNSFRLPPSSPYDKFLKAAGC", "length": 1003, "header": "tr|F4IAF6-1|F4IAF6_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IAF6-1" }, "isoforms": [ { "isoform_ac": "F4IAF5-1", "url": "https://www.uniprot.org/uniprotkb/F4IAF6/entry#F4IAF5-1", "sequence": { "sequence": "MGVMSRRVLPACGNLCFFCPSLRARSRHPVKRYKKMLAEIFPRNQEAEPNDRKIGKLCEYASRNPLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKEQMPLFSCSLLSIVRTLLEQTKEEEVQILGCNTLVDFISLQTVNSHMFNLEGLIPKLCQLAQEMGDDERSLQLRSAGMQALAFMVSFIGEHSQLSMDLDMIISVILENYMDLEKGQEDTKEVDQISDTKIPNMTKKVSFKPNPVTDYKLENMDISKSPSYWSMVCLCNIAKLAKETTTVRRVLEPLLTAFDSGDYWSPQKGVASSVLLFLQSRLEESGENCHVLVSSLIKHLDHKNVIKQQGLQINMVNVATCLALHAKQQASGAMTAVIADLIKHLRKCLQNAAESDVSVDKTKQNSDLQHALENCIAELSNKVGDAGPILDMFAVVLETISTNVVLSRTTASAILRAAHIVSVVPNVSYHKKVFPDALFHQLLLAMSHADCTTRVEAHNIFSVVLLGTLRLPWSDQHKETSEAVSGSLSVDGICTVRNQEEEKEKVEKSLNSELCKDVNHISRPSVSGQTSQQLSCQSLDSLKDLDDGIKSLCSLRLSSHQVNMLLSSLWIQATSTDNTPENFEAMASTYQITLLFSLAKRSNHMALVQCFQLAFSLRNLSLNQDGGMQHSRRRSIFTFASYMLIFGAKISNILELVPIIKESLTAQMVDPYLVLEGDIRLRAVCSGFPQEETYGSDKDDSAALNSSVIVTDDRRLKEIVITHFTSKLQTLSEEEQLNLRKEIQSDFSLDDAHSLGGQLFTDTPGPSSPLNQTELPAFEEVELSDIAAFEGISPGASGSQSGHRTSLSTNTNPVDVLSVNELLESVSETARQVASLPVSSIPVPYDQMMNQCEALVTGKQQKMSVLRSFKPQATKAITSEDNEKDEQYLLKETEEAGEDDEKAIIVADVQPQGQLGFFSQEVPQNSFRLPPSSPYDKFLKAAGC", "length": 982, "header": "tr|F4IAF5-1|F4IAF6_ARATH Computationally mapped isoform of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IAF6-1" }, "locus": { "chromosome": "1", "start_pos": 1807964, "end_pos": 1815351, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G05960.4", "url": "https://www.ensemblgenomes.org/id/AT1G05960.4" }, { "database": "Ensembl Peptide", "id": "AT1G05960.4", "url": "https://www.ensemblgenomes.org/id/AT1G05960.4" } ] } }, { "isoform_ac": "F4IAF6-1", "url": "https://www.uniprot.org/uniprotkb/F4IAF6/entry#F4IAF6-1", "sequence": { "sequence": "MGVMSRRVLPACGNLCFFCPSLRARSRHPVKRYKKMLAEIFPRNQEAEPNDRKIGKLCEYASRNPLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKEQISSEIMLTFFFLVARSFTFEFLPLFSCSLLSIVRTLLEQTKEEEVQILGCNTLVDFISLQTVNSHMFNLEGLIPKLCQLAQEMGDDERSLQLRSAGMQALAFMVSFIGEHSQLSMDLDMIISVILENYMDLEKGQEDTKEVDQISDTKIPNMTKKVSFKPNPVTDYKLENMDISKSPSYWSMVCLCNIAKLAKETTTVRRVLEPLLTAFDSGDYWSPQKGVASSVLLFLQSRLEESGENCHVLVSSLIKHLDHKNVIKQQGLQINMVNVATCLALHAKQQASGAMTAVIADLIKHLRKCLQNAAESDVSVDKTKQNSDLQHALENCIAELSNKVGDAGPILDMFAVVLETISTNVVLSRTTASAILRAAHIVSVVPNVSYHKKVFPDALFHQLLLAMSHADCTTRVEAHNIFSVVLLGTLRLPWSDQHKETSEAVSGSLSVDGICTVRNQEEEKEKVEKSLNSELCKDVNHISRPSVSGQTSQQLSCQSLDSLKDLDDGIKSLCSLRLSSHQVNMLLSSLWIQATSTDNTPENFEAMASTYQITLLFSLAKRSNHMALVQCFQLAFSLRNLSLNQDGGMQHSRRRSIFTFASYMLIFGAKISNILELVPIIKESLTAQMVDPYLVLEGDIRLRAVCSGFPQEETYGSDKDDSAALNSSVIVTDDRRLKEIVITHFTSKLQTLSEEEQLNLRKEIQSDFSLDDAHSLGGQLFTDTPGPSSPLNQTELPAFEEVELSDIAAFEGISPGASGSQSGHRTSLSTNTNPVDVLSVNELLESVSETARQVASLPVSSIPVPYDQMMNQCEALVTGKQQKMSVLRSFKPQATKAITSEDNEKDEQYLLKETEEAGEDDEKAIIVADVQPQGQLGFFSQEVPQNSFRLPPSSPYDKFLKAAGC", "length": 1003, "header": "tr|F4IAF6-1|F4IAF6_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IAF6-1" }, "locus": { "chromosome": "1", "start_pos": 1807973, "end_pos": 1815465, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G05960.2", "url": "https://www.ensemblgenomes.org/id/AT1G05960.2" }, { "database": "Ensembl Peptide", "id": "AT1G05960.2", "url": "https://www.ensemblgenomes.org/id/AT1G05960.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 265, "end_pos": 265, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IAF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IAF5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser265" }, { "start_pos": 272, "end_pos": 272, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IAF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IAF5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr272" }, { "start_pos": 752, "end_pos": 752, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IAF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IAF5" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Thr752" }, { "start_pos": 864, "end_pos": 864, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IAF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IAF5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr864" }, { "start_pos": 927, "end_pos": 927, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IAF5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IAF5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser927" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IAF5", "url": "https://www.uniprot.org/uniprotkb/F4IAF5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IAF5", "url": "https://www.uniprot.org/uniprotkb/F4IAF5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G05960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G05960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F4IAF6", "url": "https://www.uniprot.org/uniprotkb/F4IAF6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "pollen development", "id": "GO:0009555", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009555", "evidence": [ { "database": "UniProtKB", "id": "F4IAF6", "url": "https://www.uniprot.org/uniprotkb/F4IAF6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 485, "end_pos": 487, "annotation": "n_glycosylation_sequon" }, { "start_pos": 678, "end_pos": 680, "annotation": "n_glycosylation_sequon" }, { "start_pos": 764, "end_pos": 766, "annotation": "n_glycosylation_sequon" }, { "start_pos": 830, "end_pos": 832, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IAF6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1003, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IAF6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IAF6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 265, 272, 752, 864, 927 ], "sequon_annotation_sites": [ { "start_pos": 259, "end_pos": 261 }, { "start_pos": 485, "end_pos": 487 }, { "start_pos": 678, "end_pos": 680 }, { "start_pos": 764, "end_pos": 766 }, { "start_pos": 830, "end_pos": 832 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IAG4-1", "uniprot_ac": "F4IAG4", "uniprot_id": "F4IAG4_ARATH", "mass": { "chemical_mass": 72457.0, "monoisotopic_mass": 72457.0 }, "refseq": {}, "gene_names": [ { "name": "F25C20.11", "type": "synonym", "evidence": [ { "id": "F4IAG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAG4" } ] }, { "name": "F25C20_11", "type": "synonym", "evidence": [ { "id": "F4IAG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAG4" } ] } ], "protein_names": [ { "name": "Ankyrin repeat family protein", "type": "synonym", "evidence": [ { "id": "F4IAG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IAG4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IAG4", "url": "https://www.uniprot.org/uniprotkb/F4IAG4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IAG4", "locus": {} } ], "crossref": [ { "id": "F4IAG4", "url": "https://alphafold.ebi.ac.uk/entry/F4IAG4", "database": "AlphaFoldDB", "categories": [] }, { "id": "837718", "url": "https://www.ncbi.nlm.nih.gov/gene/837718", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055285", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055285", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G11740", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G11740", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WLRLNIN", "url": "https://omabrowser.org/oma/group/WLRLNIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12447", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12447", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12447:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12447:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11904", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11904", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G11740", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G11740", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IAG4", "url": "https://www.uniprot.org/uniprotkb/F4IAG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IAG4-1", "url": "https://www.uniprot.org/uniprotkb/F4IAG4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARSSPANIPATTIDDYAHSPVHYAVVVGDHAGLTRLVSSLPKLTDPEQIHTESDSMSQERVAEKISTVIDRRDVPFGETPLHLAVRLGDVFAAKTISSAGADITLQNAAGWNSLHEALCRRNSEITEAILRDHHRSAWCKWRRRLPHLIAVLSRMRDFYMEISFHFESSVIPFVGKIAPSDTYKIWKRGGDLRADTSLAGFDGFKIRRANQSFLFLSDGDEFLDVSPGTLLVLNRDDKTILNAFENAKDPISDSDIAGFCGQSSLYRPGMDVTKAKLVEITNWRRQAKIETVGEWKAKAYDVENVSFSFKSRKVGKEQGLRLDETRRSVSEPLRPQRREQRRRSVSLPEAAILVANSSVGRIKEKEIVKSLRPSVWLTDQFPLKTEELLPLLDILANHVKAVRRMRELLTTKFPAGTFPVKLSIPVIPTVKVVMTFSKFVALPPLDEFYTPLSSPKHLLAAMEDQHDVHDDEKLDRRISSSRPSFSTPSWLRLNINATGKSSRRRLVDEEQVVDPFTIPTGYKWTSNSDNSVYILHISTYLAHPKSVILSLVFTKKSSKNQRYIRYWDHYKMASEAPSWADQWGTGGIGVMAAEETTDGKKDVTGKKSGKTKAGINKAKIVVFIGVNWMKNLVQRKKKDSTSS", "length": 644, "header": "tr|F4IAG4-1|F4IAG4_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IAG4-1" }, "isoforms": [ { "isoform_ac": "F4IAG4-1", "url": "https://www.uniprot.org/uniprotkb/F4IAG4/entry#F4IAG4-1", "sequence": { "sequence": 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M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IAM4", "url": "https://www.uniprot.org/uniprotkb/F4IAM4" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IAM4", "url": "https://www.uniprot.org/uniprotkb/F4IAM4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], 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"name": "Kinase-like protein", "type": "synonym", "evidence": [ { "id": "F4IB68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB68/entry#names_and_taxonomy" } ] }, { "name": "kinase-like protein", "type": "synonym", "evidence": [ { "id": "NP_001319200", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319200" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IB68", "url": "https://www.uniprot.org/uniprotkb/F4IB68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "SIF1", "url": "https://www.uniprot.org/uniprotkb/F4IB68", "locus": {} } ], "crossref": [ { "id": "841611", "url": "https://www.ncbi.nlm.nih.gov/gene/841611", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024788", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024788", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G51840", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G51840", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ENIWRTD", "url": "https://omabrowser.org/oma/group/ENIWRTD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4IB68", "url": "https://www.orthodb.org/?gene=F4IB68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45631", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45631", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45631:SF86", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45631:SF86", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12819", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12819", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001319200", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319200", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G51840", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G51840", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IB68", "url": "https://www.uniprot.org/uniprotkb/F4IB68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IB68-1", "url": "https://www.uniprot.org/uniprotkb/F4IB68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWTVRRTMERHCVFVTIFVLILHLVQAQNQTGFISVDCGLSPPESPYNAPQTGLTYTSDTGLINTGKTGRIAKDFEPFVDKPALTMRYFPDGIRNCYNLNVTRDTNYLIKATFVYGNYDGLNVDPNFDLYLGPNLWTTVSSNDTTEEIIHVTKFNSLQICLVKTGISIPFINVLELRPLKKNVYATQSGSLKYLFRMYVSNSSRRIR", "length": 207, "header": "tr|F4IB68-1|F4IB68_ARATH Isoform 1 of Kinase-like protein OS=Arabidopsis thaliana OX=3702 GN=SIF1 PE=1 SV=2 CANONICAL=F4IB68-1" }, "isoforms": [ { "isoform_ac": "F4IB68-1", "url": "https://www.uniprot.org/uniprotkb/F4IB68/entry#F4IB68-1", "sequence": { "sequence": "MWTVRRTMERHCVFVTIFVLILHLVQAQNQTGFISVDCGLSPPESPYNAPQTGLTYTSDTGLINTGKTGRIAKDFEPFVDKPALTMRYFPDGIRNCYNLNVTRDTNYLIKATFVYGNYDGLNVDPNFDLYLGPNLWTTVSSNDTTEEIIHVTKFNSLQICLVKTGISIPFINVLELRPLKKNVYATQSGSLKYLFRMYVSNSSRRIR", "length": 207, "header": "tr|F4IB68-1|F4IB68_ARATH Isoform 1 of Kinase-like protein OS=Arabidopsis thaliana OX=3702 GN=SIF1 PE=1 SV=2 CANONICAL=F4IB68-1" }, "locus": { "chromosome": "1", "start_pos": 19249418, "end_pos": 19250823, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G51840.1", "url": "https://www.ensemblgenomes.org/id/AT1G51840.1" }, { "database": "Ensembl Peptide", "id": "AT1G51840.1", "url": "https://www.ensemblgenomes.org/id/AT1G51840.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IB68", "url": "https://www.uniprot.org/uniprotkb/F4IB68" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IB68", "url": "https://www.uniprot.org/uniprotkb/F4IB68" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G51840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G51840", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4IB68", "url": "https://www.uniprot.org/uniprotkb/F4IB68" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4IB68", "url": "https://www.uniprot.org/uniprotkb/F4IB68" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F4IB68", "url": "https://www.uniprot.org/uniprotkb/F4IB68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IB68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB68" }, { "id": "PF12819", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12819" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Malectin-like", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 206, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 142, "end_pos": 144 }, { "start_pos": 201, "end_pos": 203 }, { "start_pos": 29, "end_pos": 31 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IB75-1", "uniprot_ac": "F4IB75", "uniprot_id": "F4IB75_ARATH", "mass": { "chemical_mass": 92198.0, "monoisotopic_mass": 92198.0 }, "refseq": { "ac": "NP_175602", "name": "Regulator of Vps4 activity in the MVB pathway protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175602" }, "gene_names": [ { "name": "ISTL12", "type": "recommended", "evidence": [ { "id": "F4IB75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB75" } ] }, { "name": "T14L22.11", "type": "synonym", "evidence": [ { "id": "NP_175602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175602" }, { "id": "F4IB75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB75" } ] }, { "name": "T14L22_11", "type": "synonym", "evidence": [ { "id": "NP_175602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175602" }, { "id": "F4IB75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB75" } ] } ], "protein_names": [ { "name": "Regulator of Vps4 activity in the MVB pathway protein", "type": "synonym", "evidence": [ { "id": "NP_175602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175602" }, { "id": "F4IB75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IB75/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IB75", "url": "https://www.uniprot.org/uniprotkb/F4IB75" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ISTL12", "url": "https://www.uniprot.org/uniprotkb/F4IB75", "locus": {} } ], "crossref": [ { "id": "F4IB75", "url": "https://alphafold.ebi.ac.uk/entry/F4IB75", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G51900", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G51900", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "841617", "url": "https://www.ncbi.nlm.nih.gov/gene/841617", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G51900", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G51900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HEVYKFS", "url": "https://omabrowser.org/oma/group/HEVYKFS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12161:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12161:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03398", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03398", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_175602", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175602", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G51900", "url": 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Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "Q9ZU24", "url": "https://www.uniprot.org/uniprotkb/Q9ZU24" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9ZU24", "url": "https://www.uniprot.org/uniprotkb/Q9ZU24" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G51990", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G51990", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4IB88", "url": "https://www.uniprot.org/uniprotkb/F4IB88" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4IB88", "url": "https://www.uniprot.org/uniprotkb/F4IB88" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": 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"https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G52110", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd09612", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09612", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "3767441", "url": "https://www.ncbi.nlm.nih.gov/gene/3767441", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001229", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001229", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G52110", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52110", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR47293", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47293", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47293:SF73", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47293:SF73", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01419", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01419", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_175623", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175623", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G52110", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G52110", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IBA0", "url": "https://www.uniprot.org/uniprotkb/F4IBA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IBA0-1", "url": "https://www.uniprot.org/uniprotkb/F4IBA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYNYSRSPGFYAKKILKMSIKRMKKKNEMSSVVDLIKIGRNCPSAIVQSDVSLSSTIIGQRFLSKIYVQYSPKGIQSIRFSYINSGKPIDGSLHGQSDNTYTQTFEINHLKHEHLESVEGYYTDDTGIQALQFKTNLRISEPMGYHDGCTKFILAIEGKKIIGFHGLSFEGRRVYSLGAYFTWITPTRIEAIGGKVGTKWDDGVDHAGFTKIHVRSGPKGIQYIKFLYVDKYGHLKDGPIHGSISGKVEGYYNDHDESGVIQALRFKTNIKTSELMGSNTGKKFRLAASEMKIVGFHGYAGKNLRSLGAYFTPITPTKLAWQGTALGTLWDHGAFQAVRKLSVFEIGGYITCLGITYDNDGKVEKRDHGMQDGYPGEEVEFVVDYPNEFITSVVGTMSTDRVASLTFKTSKGRTSQRFGDRTANLVEFVLENKDCAIVGFHGWWTPSYLTALGAYSFPMPLSPASEKLEAQGGDGGASWDDGGNFEGVRKICIGTGEIGIVSVKFLYENDTHEIVVGDHHGNKNLIKHEEFELDYPGEYLTLVEGSYDIVPGSEETEVIIMLMFTTNMRASPCYGLDDNPSFVLQKRGHKIVGFHGKSSKMLHQLGIHVLPITHP", "length": 615, "header": "tr|F4IBA0-1|F4IBA0_ARATH Isoform 1 of Mannose-binding lectin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IBA0-1" }, "isoforms": [ { "isoform_ac": "F4IBA0-1", "url": "https://www.uniprot.org/uniprotkb/F4IBA0/entry#F4IBA0-1", "sequence": { "sequence": "MYNYSRSPGFYAKKILKMSIKRMKKKNEMSSVVDLIKIGRNCPSAIVQSDVSLSSTIIGQRFLSKIYVQYSPKGIQSIRFSYINSGKPIDGSLHGQSDNTYTQTFEINHLKHEHLESVEGYYTDDTGIQALQFKTNLRISEPMGYHDGCTKFILAIEGKKIIGFHGLSFEGRRVYSLGAYFTWITPTRIEAIGGKVGTKWDDGVDHAGFTKIHVRSGPKGIQYIKFLYVDKYGHLKDGPIHGSISGKVEGYYNDHDESGVIQALRFKTNIKTSELMGSNTGKKFRLAASEMKIVGFHGYAGKNLRSLGAYFTPITPTKLAWQGTALGTLWDHGAFQAVRKLSVFEIGGYITCLGITYDNDGKVEKRDHGMQDGYPGEEVEFVVDYPNEFITSVVGTMSTDRVASLTFKTSKGRTSQRFGDRTANLVEFVLENKDCAIVGFHGWWTPSYLTALGAYSFPMPLSPASEKLEAQGGDGGASWDDGGNFEGVRKICIGTGEIGIVSVKFLYENDTHEIVVGDHHGNKNLIKHEEFELDYPGEYLTLVEGSYDIVPGSEETEVIIMLMFTTNMRASPCYGLDDNPSFVLQKRGHKIVGFHGKSSKMLHQLGIHVLPITHP", "length": 615, "header": "tr|F4IBA0-1|F4IBA0_ARATH Isoform 1 of Mannose-binding lectin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IBA0-1" }, "locus": { "chromosome": "1", "start_pos": 19386709, "end_pos": 19389740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52110.1", "url": "https://www.ensemblgenomes.org/id/AT1G52110.1" }, { "database": "Ensembl Peptide", "id": "AT1G52110.1", "url": "https://www.ensemblgenomes.org/id/AT1G52110.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 306, "end_pos": 306, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IBA0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IBA0" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser306" }, { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IBA0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IBA0" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr315" }, { "start_pos": 317, "end_pos": 317, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IBA0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IBA0" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr317" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IBA0", "url": "https://www.uniprot.org/uniprotkb/F4IBA0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4IBA0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IBA0" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IBA0", "url": "https://www.uniprot.org/uniprotkb/F4IBA0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G52110", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52110", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IBA0", "url": "https://www.uniprot.org/uniprotkb/F4IBA0" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4IBA0", "url": "https://www.uniprot.org/uniprotkb/F4IBA0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F4IBA0", "url": "https://www.uniprot.org/uniprotkb/F4IBA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IBA0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 615, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IBA0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IBA0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IBA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IBA0" }, { "id": "PS51752", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51752" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Jacalin-type lectin", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 183, "start_aa": "Leu", "end_aa": "Trp", "glycosite_overlap": "" } ], "binding_sites": [], 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"field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IBA7-1", "uniprot_ac": "F4IBA7", "uniprot_id": "F4IBA7_ARATH", "mass": { "chemical_mass": 37381.0, "monoisotopic_mass": 37381.0 }, "refseq": { "ac": "NP_683420", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683420" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "F4IBA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IBA7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_683420", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683420" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IBA7", "url": "https://www.uniprot.org/uniprotkb/F4IBA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IBA7", "locus": {} } ], "crossref": [ { "id": "F4IBA7", "url": "https://alphafold.ebi.ac.uk/entry/F4IBA7", "database": "AlphaFoldDB", "categories": [] }, { "id": "841646", "url": "https://www.ncbi.nlm.nih.gov/gene/841646", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4IBA7", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4IBA7*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "ath:AT1G52155", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52155", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NRHFQTN", "url": "https://omabrowser.org/oma/group/NRHFQTN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4IBA7", "url": "https://www.orthodb.org/?gene=F4IBA7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36329", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36329", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36329:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36329:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_683420", "url": 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OX=3702 GN= PE=4 SV=1 CANONICAL=F4IBA7-1" }, "isoforms": [ { "isoform_ac": "F4IBA7-1", "url": "https://www.uniprot.org/uniprotkb/F4IBA7/entry#F4IBA7-1", "sequence": { "sequence": "MEESQGINGVDDSYRHLPILYLTFLTIWSFSACSWTVNTFKNRHFQTNSLQWTLASVPLIKALQLTLSFLFWHSCFHHHICSLWMSFGVYVTGVLFQTASFVSFLLISHGYCITCERLSLTERRTTASLGCVFYLTLVGYRASVPYFAVLLILNYMISFYVIFHHISQNLAVLREQLSFIEDENVQAMHDAVYAKYIMFKKFQGAMQIVAMAETVIYMNMDNSSQNYWLRLLIREWAQFCIFLYIGWTFRSQDMAPRFSVMPTLKPKENTIIPPIYSMEMDAKSFKEFRSQEWNIGVPMPYSNYEKQKDSVLVIIQHPR", "length": 319, "header": "tr|F4IBA7-1|F4IBA7_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IBA7-1" }, "locus": { "chromosome": "1", "start_pos": 19417434, "end_pos": 19419874, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52155.1", "url": "https://www.ensemblgenomes.org/id/AT1G52155.1" }, { "database": "Ensembl Peptide", "id": "AT1G52155.1", "url": "https://www.ensemblgenomes.org/id/AT1G52155.1" } ] } } ], 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20073", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20073", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G65780", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G65780", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IBK4", "url": "https://www.uniprot.org/uniprotkb/F4IBK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IBK4-1", "url": "https://www.uniprot.org/uniprotkb/F4IBK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1065, "header": "tr|F4IBK4-1|F4IBK4_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IBK4-1" }, "isoforms": [ { "isoform_ac": "F4IBK4-1", "url": "https://www.uniprot.org/uniprotkb/F4IBK4/entry#F4IBK4-1", "sequence": { "sequence": 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"length": 1065, "header": "tr|F4IBK4-1|F4IBK4_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IBK4-1" }, "locus": { "chromosome": "1", "start_pos": 24462958, "end_pos": 24466888, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G65780.1", "url": "https://www.ensemblgenomes.org/id/AT1G65780.1" }, { "database": "Ensembl Peptide", "id": "AT1G65780.1", "url": "https://www.ensemblgenomes.org/id/AT1G65780.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IBK4", "url": "https://www.uniprot.org/uniprotkb/F4IBK4" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation 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thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IC62-1" }, "locus": { "chromosome": "1", "start_pos": 4157654, "end_pos": 4159046, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G12244.1", "url": "https://www.ensemblgenomes.org/id/AT1G12244.1" }, { "database": "Ensembl Peptide", "id": "AT1G12244.1", "url": "https://www.ensemblgenomes.org/id/AT1G12244.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 102, "end_pos": 102, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IC62", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IC62" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr102" }, { "start_pos": 107, "end_pos": 107, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IC62", 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Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IC62", "url": "https://www.uniprot.org/uniprotkb/F4IC62" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IC62", "url": "https://www.uniprot.org/uniprotkb/F4IC62" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and 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"UniProtKB", "id": "F4IC79", "url": "https://www.uniprot.org/uniprotkb/F4IC79" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IC79", "url": "https://www.uniprot.org/uniprotkb/F4IC79" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 3 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "exact_o_linked_glycan_sites", "count": 2 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 3 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "exact_o_linked_glycan_sites", "count": 2 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4ICA1-1", "uniprot_ac": "F4ICA1", "uniprot_id": "F4ICA1_ARATH", "mass": { "chemical_mass": 78167.0, "monoisotopic_mass": 78167.0 }, "refseq": {}, "gene_names": [ { "name": "F25I16.10", "type": "synonym", "evidence": [ { "id": "F4ICA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ICA1" } ] }, { "name": "F25I16_10", "type": "synonym", "evidence": [ { "id": "F4ICA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ICA1" } ] } ], "protein_names": [ { "name": "BED zinc finger and hAT dimerization domain-containing protein", "type": "synonym", "evidence": [ { "id": "F4ICA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ICA1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4ICA1", "url": "https://www.uniprot.org/uniprotkb/F4ICA1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4ICA1", "locus": {} } ], "crossref": [ { "id": "F4ICA1", "url": "https://alphafold.ebi.ac.uk/entry/F4ICA1", "database": "AlphaFoldDB", "categories": [] }, { "id": "838437", "url": "https://www.ncbi.nlm.nih.gov/gene/838437", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G18560", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G18560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CHIPYPC", "url": "https://omabrowser.org/oma/group/CHIPYPC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46481", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46481", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46481:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46481:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02892", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02892", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27039", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27039", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G18560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G18560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4ICA1", "url": "https://www.uniprot.org/uniprotkb/F4ICA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ICA1-1", "url": "https://www.uniprot.org/uniprotkb/F4ICA1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEWNVNNAFKTYKEMEPKAMMDMTLVPHSDPIDIGLGSSDKSNSVPPKRKKTMTSVYLKYFETAPDSKTRKCKFCGQSYSIATATGNLGRHLTNRHPGYDKAAADVVTSSSVPQTPPAVVKPSQSQSKVPQLDYDHLNWLVLKWLALSSLPPSTVDETWLGNSFKFLKPSIQLWPAEKYKAILDEVFTSMRGDVKTTLEHIQSKVSVTLSFWNSYENIFYMSVTGQWIDENWSSHRLLLDICRIPYPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSENAIHACHSLKEYFDGQKVLPFCYIPCAAQTLNDIIDEGLATIKPIISKVREFTQELNASTELSDDFIQLTTAYQEGNWKLPIDASSRWSGNYQMVNILCKASKSLDSVIRKNEDALENRMMLSSVEKNAVTIVHNYLDLDSFHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQKSCHNPDWLRTCAESMAQKARSYNTQVCNVFTYITAILDPRIKTEYIPETINLESYIDEARSHFIRNYSSSHFTSSMTSGYRPQEVDEGGGNISFAEEIARRKRRGSMSNNVVDELTQYLSESIVPMQTDVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIEAGMKLKYKCSEIDYERLMELAATVAADNSAGGLEKIQQHR", "length": 690, "header": "tr|F4ICA1-1|F4ICA1_ARATH Isoform 1 of BED zinc finger and hAT dimerization domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ICA1-1" }, "isoforms": [ { "isoform_ac": "F4ICA1-1", "url": "https://www.uniprot.org/uniprotkb/F4ICA1/entry#F4ICA1-1", "sequence": { "sequence": "MEWNVNNAFKTYKEMEPKAMMDMTLVPHSDPIDIGLGSSDKSNSVPPKRKKTMTSVYLKYFETAPDSKTRKCKFCGQSYSIATATGNLGRHLTNRHPGYDKAAADVVTSSSVPQTPPAVVKPSQSQSKVPQLDYDHLNWLVLKWLALSSLPPSTVDETWLGNSFKFLKPSIQLWPAEKYKAILDEVFTSMRGDVKTTLEHIQSKVSVTLSFWNSYENIFYMSVTGQWIDENWSSHRLLLDICRIPYPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSENAIHACHSLKEYFDGQKVLPFCYIPCAAQTLNDIIDEGLATIKPIISKVREFTQELNASTELSDDFIQLTTAYQEGNWKLPIDASSRWSGNYQMVNILCKASKSLDSVIRKNEDALENRMMLSSVEKNAVTIVHNYLDLDSFHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQKSCHNPDWLRTCAESMAQKARSYNTQVCNVFTYITAILDPRIKTEYIPETINLESYIDEARSHFIRNYSSSHFTSSMTSGYRPQEVDEGGGNISFAEEIARRKRRGSMSNNVVDELTQYLSESIVPMQTDVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIEAGMKLKYKCSEIDYERLMELAATVAADNSAGGLEKIQQHR", "length": 690, "header": "tr|F4ICA1-1|F4ICA1_ARATH Isoform 1 of BED zinc finger and hAT dimerization domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ICA1-1" }, "locus": { "chromosome": "1", "start_pos": 6385186, "end_pos": 6388180, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G18560.1", "url": "https://www.ensemblgenomes.org/id/AT1G18560.1" }, { "database": "Ensembl Peptide", "id": "AT1G18560.1", "url": "https://www.ensemblgenomes.org/id/AT1G18560.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 115, "end_pos": 115, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ICA1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICA1" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr115" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4ICA1", "url": "https://www.uniprot.org/uniprotkb/F4ICA1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4ICA1", "url": "https://www.uniprot.org/uniprotkb/F4ICA1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4ICA1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICA1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT1G18560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G18560", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BCC4-1", "protein_name": "Zinc finger BED-type containing 1", "gene_name": "ZBED1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEAKSLEGAQADLKLVAHPRAKSKVWRYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNTSNLSYHLEKNHPDEFCEFVKSNTEQMREAFASAFSKLKPDAAQQSAQEPLAAKGAHGHEGRKQQELTAAVLGLICEGLYPASIVDEPTFRGLLKTAEPRYELPSRKFFCSKAIPERYGAVRDAVLKELAEAAWCGVSTDLWRSPSQNRTYVTLAAHFLSGGGGCGGGGGAAPQGLALGSRCLKTFEVPEDNAAETITRVLYEAFIEWGVSSKVFGATTDRGKDVAKACSLLDITVQMPCLAHTFDAGLQQAFRLPKLGALLARCRKLVEYFQQSTVAMYLLYEKQKQQHAAPCMLVSDRVAWWGSTLAMLQRLKDQQFAIAGVLLEDSNNHHLMLEAAEWASIEGLVDLLQPFKQVAEMLSASRHPTISMVKPLLHMLLNTTLTIKETDSKEISMAKEVIAKELSKTYQEMPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGSYRGAPEDKPYPMPEEPPAKKPALSPTPPPTSVINTMLAEIFCPTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPVLPKVLQKYWCVAATRVFPERLFCSAANAVHAKRNRLAPAHVDEQIFLYENARAAAAAAAAEPELEDEDEGEWGLDHEQVFPLGDAVHAGYFGLRDGGFV", "length": 709 }, "evidence": [ { "id": "F4ICA1", "url": "https://omabrowser.org/oma/group/F4ICA1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A3Q2UG84-1", "protein_name": "Zinc finger BED-type containing 1", "gene_name": "ZBED1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MENKSLEGSPSDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNTSNLSYHLEKNHPDEFCEFVKSNTEQMREAFATAFSKIKPESSQQVVQDSLIMKTYQNYENKKHQELTSAVISLICEGMYPASIVDEPTFKALLRTADPRYELPSRKYFCTKAIPEKYNTIREIVLKELTDVLWCGISTDMWRSENQNRSYVTVAVHFLSSSHSNCLVVNSRCLKTFEVPEDNTAETITRVLYETFIEWGINTKVFGATTDYSKDIVKACSLLDIPVQMPCLGHTFNAGIQQAFQLPKLCSLLARCRKLVEYFQQSTVAMYMLSEKQKQQNILHCMLVSDRVSWWGSTLAMLQRLKEQQFVIAAVLVEDSNNHHLMLEASEWNTIEGLVELLQPFKQVAEMMSASKYPTISMVKPLLHMLLNTTLNIKENDLKEISMAKEVIAKELSTTYQHTPEIDMFLNVATFLDPRYKKLPFLSAFERQQVENRVVEEAKSLLEKVKENTFRTEEKFFTVSEEPPVKKIIISSTPPPTSVINNMLAEIFCQTGGVEDQEEWHAQIVEELSNFKSQKVLGLNEDPLKWWSDRLALFPVLPKVLQKYWCILATRVFPERLFGSSANVVSAKRNRLAPAHVDEQIFLYENTRNGSEAEPEDEDEGEWGLEQEQIFNLNDSVNVNNNFFNIRDSGFV", "length": 695 }, "evidence": [ { "id": "F4ICA1", "url": "https://omabrowser.org/oma/group/F4ICA1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O96006-1", "protein_name": "E3 SUMO-protein ligase ZBED1", "gene_name": "ZBED1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDSKKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAVREVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPEENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQQAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTISMVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL", "length": 694 }, "evidence": [ { "id": "F4ICA1", "url": "https://omabrowser.org/oma/group/F4ICA1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], 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"https://www.uniprot.org/uniprotkb/F4INW8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4INW8", "url": "https://www.uniprot.org/uniprotkb/F4INW8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4INW8", "locus": {} } ], "crossref": [ { "id": "F4INW8", "url": "https://alphafold.ebi.ac.uk/entry/F4INW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G30680", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G30680", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817618", "url": "https://www.ncbi.nlm.nih.gov/gene/817618", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT2G30680", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G30680", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT2G30680", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G30680", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B0W1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0W1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B0W1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0W1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4INW8", "url": "https://www.uniprot.org/uniprotkb/F4INW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4INW8-1", "url": "https://www.uniprot.org/uniprotkb/F4INW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASVQPVMNRDLSSFKRTMNTLAVSSDVAFFNITLRFWIRRNDETREQGKFKPHTDLPRLQSFYLDYYQKNVMDVIKIIGNQYTILKEIESSAHSAAIRAIHAALPPHKINGDSRKQADSYIQHACDTAGVLFRVLELLSEDVQLPSEFLEADADVKQLAEIFRPYNIIPLYICGKYSMKRLPELQAAIDALSFPLCTILPLRVAYNPSPARDSEDLPAVFEISPREPILSLLFSSILSLFFSSVFFFLLFSIDYTFHYIVSYLRLKRCRLTTM", "length": 274, "header": "tr|F4INW8-1|F4INW8_ARATH Isoform 1 of Callose synthase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4INW8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B0W1-1", "url": "https://www.uniprot.org/uniprotkb/F4INW8/entry#A0A1P8B0W1-1", "sequence": { "sequence": "MLVFIEIESSAHSAAIRAIHAALPPHKINGDSRKQADSYIQHACDTAGVLFRVLELLSEDVQLPSEFLEADADVKQLAEIFRPYNIIPLYICGKYSMKRLPELQAAIDALSFPLCTILPLRVAYNPSPARDSEDLPAVFEISPREPILSLLFSSILSLFFSSVFFFLLFSIDYTFHYIVSYLRLKRCRLTTM", "length": 192, "header": "tr|A0A1P8B0W1-1|F4INW8_ARATH Computationally mapped isoform of Callose synthase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4INW8-1" }, "locus": { "chromosome": "2", "start_pos": 13074285, "end_pos": 13075396, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30680.2", "url": "https://www.ensemblgenomes.org/id/AT2G30680.2" }, { "database": "Ensembl Peptide", "id": "AT2G30680.2", "url": "https://www.ensemblgenomes.org/id/AT2G30680.2" } ] } }, { "isoform_ac": "F4INW8-1", "url": "https://www.uniprot.org/uniprotkb/F4INW8/entry#F4INW8-1", "sequence": { "sequence": "MASVQPVMNRDLSSFKRTMNTLAVSSDVAFFNITLRFWIRRNDETREQGKFKPHTDLPRLQSFYLDYYQKNVMDVIKIIGNQYTILKEIESSAHSAAIRAIHAALPPHKINGDSRKQADSYIQHACDTAGVLFRVLELLSEDVQLPSEFLEADADVKQLAEIFRPYNIIPLYICGKYSMKRLPELQAAIDALSFPLCTILPLRVAYNPSPARDSEDLPAVFEISPREPILSLLFSSILSLFFSSVFFFLLFSIDYTFHYIVSYLRLKRCRLTTM", "length": 274, "header": "tr|F4INW8-1|F4INW8_ARATH Isoform 1 of Callose synthase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4INW8-1" }, "locus": { "chromosome": "2", "start_pos": 13073648, "end_pos": 13075396, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30680.1", "url": "https://www.ensemblgenomes.org/id/AT2G30680.1" }, { "database": "Ensembl Peptide", "id": "AT2G30680.1", "url": "https://www.ensemblgenomes.org/id/AT2G30680.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0W1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0W1" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0W1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0W1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G30680", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G30680", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4INW8", "url": "https://www.uniprot.org/uniprotkb/F4INW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4INW8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 274, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4INW8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4INW8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4ISN0-1", "uniprot_ac": "F4ISN0", "uniprot_id": "F4ISN0_ARATH", "mass": { "chemical_mass": 277296.0, "monoisotopic_mass": 277296.0 }, "refseq": {}, "gene_names": [ { "name": "F3N11.1", "type": "synonym", "evidence": [ { "id": "F4ISN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ISN0" } ] }, { "name": "F3N11_1", "type": "synonym", "evidence": [ { "id": "F4ISN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ISN0" } ] } ], "protein_names": [ { "name": "Zinc finger FYVE domain protein", "type": "synonym", "evidence": [ { "id": "F4ISN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ISN0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4ISN0", "url": "https://www.uniprot.org/uniprotkb/F4ISN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4ISN0", "locus": {} } ], "crossref": [ { "id": "AT2G25730", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G25730", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817114", "url": "https://www.ncbi.nlm.nih.gov/gene/817114", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9SL90", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SL90*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR057946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G25730", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G25730", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KYLHNWD", "url": "https://omabrowser.org/oma/group/KYLHNWD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR35478", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35478", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35478:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35478:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G25730", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G25730", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B1I9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1I9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1I9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ISN0", "url": "https://www.uniprot.org/uniprotkb/F4ISN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ISN0-1", "url": "https://www.uniprot.org/uniprotkb/F4ISN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SL90", "url": "https://www.uniprot.org/uniprotkb/Q9SL90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SL90-1", "url": "https://www.uniprot.org/uniprotkb/Q9SL90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKETEILSRLAANHLHLAQFEPLKATLLALRVRNPDLALTILQTIVSNAGRFDNVLWSRSCPSPSLLSFLSTIELLRFENPTSPWGFDSETLSLRADFLLMVQVLIDRVTERIKEDEESEDENSGLGNCLRVLQGVLELGVERLKFVVDTSSSEGSNKIEEDAVVSLRSIVLDYSDVFDALCCNIQRQLAGCESYGTCLVEEVQGEEQRKEMNEATCIGSPELDNINVFALIQRNVQLAQLDAMKTKLDEGDERGAADRIRYLHLDYGVEKENYHAVLKALLSRVMEKKDEYGDSWHMVRQNLLFMYKEALSSNCGDLVQMIQGIQDDMLLPHSQLHLSLDNEQIPLPLECFRRYLVDLKTERNIEDKSSPMSRAINSCLRDMYHYARISGSHVLECVMCAALSSVKKEKLQEANDVLTLFPRLRPLVASMGWDLLPGKTATRRKLMRLLWTSDSQALRLEESSLYGNQTDEKSCVEHLCDTLCYQLELASFAACVNSGKSWTPKASFLMHGNVSSAHDDAEVDPFVENLVLERLSAQSPLRVLFDVVPGIKFQDAISLISMQPIASTAEAWKRIEDIELMHMRYALEAIVLALGAMEEAMKDETDASHRVVFYHLKDLTNHLEAIKNVPRKIMMVNIVISLLHIDDIRLSSTQSASSACFSEKSNTPGLDPGDLGTEGEKEIVISFTKQLLDVLRRNLPSHPIEQECQLDGNYSTDGRQALEWRVSMAKRFIEDCEWRLSVMQHLLPLSERQWGLKEVLSILRAAPEKLLNLCMQRAKYDIGEEAVNRFALSAEDKATLELAEWVDNAFKGTLVEDVMSRTAEGAAAVQDLDFHSLGSQLSPLAMILLCIDAAASSAKSPTISKQLLDKSQVMLSEIYPGGAPKVGFTYWDQVHEVAIISVLRRILKRLQEFLEQDDPQILQASFSGDTIISSCTESHRQGQKDRALAMLHQMIEDAHRGKRQFLSGKLHNLARALADEKPEVDVLKGDGSDMAVEKDGVLGLGLKYTKQSPGSANRAVDGNPVSHETEDKGKKSFGPLSNKTSTYLSQFILYTAAIGDIVDGTDTTHDFNFFSLVYEWPKDLLTRLVFDRSSTDAAAKVAEVMSADFVHEVISACVPPVYPPRSGHGWACIPVIPTTPCSHSEGKVLSPSIEAKPNCYVRSSATPGVPLYPLQLDVIRHLVKISPVRAVLACVFGGSILYNGSDSIISSSLNDEFPSSPDADRLFYEFSLDQSERYPTLNRWIQMQTNLHRVSEFVVTPKQKPDDTRIKPDERTGIKRLLEHDSDSESDTEETFSKNNIQPALTDGSARDGGSFENGVCRTDPTVFLSFDWENEVPYEKAVNRLIDEGKLMDALALSDRFLRNGASDWLLQLLIKSREENPSTSGRSQGYGGQSNSWQYCLRLKDKQLAATLALKYMHTWELEAALNVLTMCSCHLLESDPISLEVLHRRQALQKYSHILSADDRHNSWQEVEAECKEDPEGLALRLAGKGAVSAALEVAESAGLSIDLRRELQGRQLVKLLTTDPLNGGGPAEASRFLSSLQDSADALPVVMGAMQLLPDLRSKQLLVHFFLKRRDSNLSDLEVARLNSWALGLKVLAALPLPWQQRCSSLHEHPNLIFEALLMRKQLQYASLILKEFPALRDNNVIMAYAAKAISVTIIPPPREPRITVSASRLRQKSRAGPAVKASFTSSLSNFQREARRAFSWAPRNAENRTTSKDVYRKRKNSGLGASERAAWEAMTGIQEDQGSSYSADGQDRLPSVSIAEEWMLTGDKTKDEGVRASHKYESTPDIILFKALLSLCSDELVSARSAMDLCISQMKNVLSSKQLSEGASVETIGRAYHATEAFVQGLSYAKSLLRKLLGTTESTNNNGERSRDVDDISSDAGSSSVGSQSTDEPSDVLSLTEIWLGRAELLQSLLGSGISTSLDDIADQLSSECLRDRLISDERYSMAVYMCKKCKIDVFPVWKAWGLALLRMERYAQARVKFKQAFQLKGEDIPDVIQEIINTIEGGPPVDVSIVRSMYDHLAKSAPTILDDSLSADSYLNVLHMPSTFPRSERSRRSLESEKNSSVPGSDFEDGPRSNLDTTRYSECTNYLQEHARQNLLGFMFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVGYGAISSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGYCCIQLFMNSTTQEDAVRHLEHAKAHFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKLSSRVKMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLSAVDIYAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQVLGAAINIYANKHKERPDRLIDMLTSSHRKVLACVVCGRLKSAFQIASKSGSVADVQYVAHQALHANSHTVLDMCKQWLAKYM", "length": 2487, "header": "tr|F4ISN0-1|F4ISN0_ARATH Isoform 1 of Zinc finger FYVE domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ISN0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B1I9-1", "url": "https://www.uniprot.org/uniprotkb/F4ISN0/entry#A0A1P8B1I9-1", "sequence": { "sequence": "MDKETEILSRLAANHLHLAQFEPLKATLLALRVRNPDLALTILQTIVSNAGRFDNVLWSRSCPSPSLLSFLSTIELLRFENPTSPWGFDSETLSLRADFLLMVQVLIDRVTERIKEDEESEDENSGLGNCLRVLQGVLELGVERLKFVVDTSSSEGSNKIEEDAVVSLRSIVLDYSDVFDALCCNIQRQLAGCESYGTCLVEEVQGEEQRKEMNEATCIGSPELDNINVFALIQRNVQLAQLDAMKTKLDEGDERGAADRIRYLHLDYGVEKENYHAVLKALLSRVMEKKDEYGDSWHMVRQNLLFMYKEALSSNCGDLVQMIQGIQDDMLLPHSQLHLSLDNEQIPLPLECFRRYLVDLKTERNIEDKSSPMSRAINSCLRDMYHYARISGSHVLECVMCAALSSVKKEKLQEANDVLTLFPRLRPLVASMGWDLLPGKTATRRKLMRLLWTSDSQALRLEESSLYGNQTDELELASFAACVNSGKSWTPKASFLMHGNVSSAHDDAEVDPFVENLVLERLSAQSPLRVLFDVVPGIKFQDAISLISMQPIASTAEAWKRIEDIELMHMRYALEAIVLALGAMEEAMKDETDASHRVVFYHLKDLTNHLEAIKNVPRKIMMVNIVISLLHIDDIRLSSTQSASSACFSEKSNTPGLDPGDLGTEGEKEIVISFTKQLLDVLRRNLPSHPIEQECQLDGNYSTDGRQALEWRVSMAKRFIEDCEWRLSVMQHLLPLSERQWGLKEVLSILRAAPEKLLNLCMQRAKYDIGEEAVNRFALSAEDKATLELAEWVDNAFKGTLVEDVMSRTAEGAAAVQDLDFHSLGSQLSPLAMILLCIDAAASSAKSPTISKQLLDKSQVMLSEIYPGGAPKVGFTYWDQVHEVAIISVLRRILKRLQEFLEQDDPQILQASFSGDTIISSCTESHRQGQKDRALAMLHQMIEDAHRGKRQFLSGKLHNLARALADEKPEVDVLKGDGSDMAVEKDGVLGLGLKYTKQSPGSANRAVDGNPVSHETEDKGKKSFGPLSNKTSTYLSQFILYTAAIGDIVDGTDTTHDFNFFSLVYEWPKDLLTRLVFDRSSTDAAAKVAEVMSADFVHEVISACVPPVYPPRSGHGWACIPVIPTTPCSHSEGKVLSPSIEAKPNCYVRSSATPGVPLYPLQLDVIRHLVKISPVRAVLACVFGGSILYNGSDSIISSSLNDEFPSSPDADRLFYEFSLDQSERYPTLNRWIQMQTNLHRVSEFVVTPKQKPDDTRIKPDERTGIKRLLEHDSDSESDTEETFSKNNIQPALTDGSARDGGSFENGVCRTDPTVFLSFDWENEVPYEKAVNRLIDEGKLMDALALSDRFLRNGASDWLLQLLIKSREENPSTSGRSQGYGGQSNSWQYCLRLKDKQLAATLALKYMHTWELEAALNVLTMCSCHLLESDPISLEVLHRRQALQKYSHILSADDRHNSWQEVEAECKEDPEGLALRLAGKGAVSAALEVAESAGLSIDLRRELQGRQLVKLLTTDPLNGGGPAEASRFLSSLQDSADALPVVMGAMQLLPDLRSKQLLVHFFLKRRDSNLSDLEVARLNSWALGLKVLAALPLPWQQRCSSLHEHPNLIFEALLMRKQLQYASLILKEFPALRDNNVIMAYAAKAISVTIIPPPREPRITVSASRLRQKSRAGPAVKASFTSSLSNFQREARRAFSWAPRNAENRTTSKDVYRKRKNSGLGASERAAWEAMTGIQEDQGSSYSADGQDRLPSVSIAEEWMLTGDKTKDEGVRASHKYESTPDIILFKALLSLCSDELVSARSAMDLCISQMKNVLSSKQLSEGASVETIGRAYHATEAFVQGLSYAKSLLRKLLGTTESTNNNGERSRDVDDISSDAGSSSVGSQSTDEPSDVLSLTEIWLGRAELLQSLLGSGISTSLDDIADQLSSECLRDRLISDERYSMAVYMCKKCKIDVFPVWKAWGLALLRMERYAQARVKFKQAFQLKGEDIPDVIQEIINTIEGGPPVDVSIVRSMYDHLAKSAPTILDDSLSADSYLNVLHMPSTFPRSERSRRSLESEKNSSVPGSDFEDGPRSNLDTTRYSECTNYLQEHARQNLLGFMFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVGYGAISSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGYCCIQLFMNSTTQEDAVRHLEHAKAHFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKLSSRVKMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLSAVDIYAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQVLGAAINIYANKHKERPDRLIDMLTSSHRKVLACVVCGRLKSAFQIASKSGSVADVQYVAHQALHANSHTVLDMCKQWLAKYM", "length": 2473, "header": "tr|A0A1P8B1I9-1|F4ISN0_ARATH Computationally mapped isoform of Zinc finger FYVE domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ISN0-1" }, "locus": { "chromosome": "2", "start_pos": 10956302, "end_pos": 10972729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G25730.4", "url": "https://www.ensemblgenomes.org/id/AT2G25730.4" }, { "database": "Ensembl Peptide", "id": "AT2G25730.4", "url": "https://www.ensemblgenomes.org/id/AT2G25730.4" } ] } }, { "isoform_ac": "F4ISN0-1", "url": "https://www.uniprot.org/uniprotkb/F4ISN0/entry#F4ISN0-1", "sequence": { "sequence": "MDKETEILSRLAANHLHLAQFEPLKATLLALRVRNPDLALTILQTIVSNAGRFDNVLWSRSCPSPSLLSFLSTIELLRFENPTSPWGFDSETLSLRADFLLMVQVLIDRVTERIKEDEESEDENSGLGNCLRVLQGVLELGVERLKFVVDTSSSEGSNKIEEDAVVSLRSIVLDYSDVFDALCCNIQRQLAGCESYGTCLVEEVQGEEQRKEMNEATCIGSPELDNINVFALIQRNVQLAQLDAMKTKLDEGDERGAADRIRYLHLDYGVEKENYHAVLKALLSRVMEKKDEYGDSWHMVRQNLLFMYKEALSSNCGDLVQMIQGIQDDMLLPHSQLHLSLDNEQIPLPLECFRRYLVDLKTERNIEDKSSPMSRAINSCLRDMYHYARISGSHVLECVMCAALSSVKKEKLQEANDVLTLFPRLRPLVASMGWDLLPGKTATRRKLMRLLWTSDSQALRLEESSLYGNQTDEKSCVEHLCDTLCYQLELASFAACVNSGKSWTPKASFLMHGNVSSAHDDAEVDPFVENLVLERLSAQSPLRVLFDVVPGIKFQDAISLISMQPIASTAEAWKRIEDIELMHMRYALEAIVLALGAMEEAMKDETDASHRVVFYHLKDLTNHLEAIKNVPRKIMMVNIVISLLHIDDIRLSSTQSASSACFSEKSNTPGLDPGDLGTEGEKEIVISFTKQLLDVLRRNLPSHPIEQECQLDGNYSTDGRQALEWRVSMAKRFIEDCEWRLSVMQHLLPLSERQWGLKEVLSILRAAPEKLLNLCMQRAKYDIGEEAVNRFALSAEDKATLELAEWVDNAFKGTLVEDVMSRTAEGAAAVQDLDFHSLGSQLSPLAMILLCIDAAASSAKSPTISKQLLDKSQVMLSEIYPGGAPKVGFTYWDQVHEVAIISVLRRILKRLQEFLEQDDPQILQASFSGDTIISSCTESHRQGQKDRALAMLHQMIEDAHRGKRQFLSGKLHNLARALADEKPEVDVLKGDGSDMAVEKDGVLGLGLKYTKQSPGSANRAVDGNPVSHETEDKGKKSFGPLSNKTSTYLSQFILYTAAIGDIVDGTDTTHDFNFFSLVYEWPKDLLTRLVFDRSSTDAAAKVAEVMSADFVHEVISACVPPVYPPRSGHGWACIPVIPTTPCSHSEGKVLSPSIEAKPNCYVRSSATPGVPLYPLQLDVIRHLVKISPVRAVLACVFGGSILYNGSDSIISSSLNDEFPSSPDADRLFYEFSLDQSERYPTLNRWIQMQTNLHRVSEFVVTPKQKPDDTRIKPDERTGIKRLLEHDSDSESDTEETFSKNNIQPALTDGSARDGGSFENGVCRTDPTVFLSFDWENEVPYEKAVNRLIDEGKLMDALALSDRFLRNGASDWLLQLLIKSREENPSTSGRSQGYGGQSNSWQYCLRLKDKQLAATLALKYMHTWELEAALNVLTMCSCHLLESDPISLEVLHRRQALQKYSHILSADDRHNSWQEVEAECKEDPEGLALRLAGKGAVSAALEVAESAGLSIDLRRELQGRQLVKLLTTDPLNGGGPAEASRFLSSLQDSADALPVVMGAMQLLPDLRSKQLLVHFFLKRRDSNLSDLEVARLNSWALGLKVLAALPLPWQQRCSSLHEHPNLIFEALLMRKQLQYASLILKEFPALRDNNVIMAYAAKAISVTIIPPPREPRITVSASRLRQKSRAGPAVKASFTSSLSNFQREARRAFSWAPRNAENRTTSKDVYRKRKNSGLGASERAAWEAMTGIQEDQGSSYSADGQDRLPSVSIAEEWMLTGDKTKDEGVRASHKYESTPDIILFKALLSLCSDELVSARSAMDLCISQMKNVLSSKQLSEGASVETIGRAYHATEAFVQGLSYAKSLLRKLLGTTESTNNNGERSRDVDDISSDAGSSSVGSQSTDEPSDVLSLTEIWLGRAELLQSLLGSGISTSLDDIADQLSSECLRDRLISDERYSMAVYMCKKCKIDVFPVWKAWGLALLRMERYAQARVKFKQAFQLKGEDIPDVIQEIINTIEGGPPVDVSIVRSMYDHLAKSAPTILDDSLSADSYLNVLHMPSTFPRSERSRRSLESEKNSSVPGSDFEDGPRSNLDTTRYSECTNYLQEHARQNLLGFMFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVGYGAISSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGYCCIQLFMNSTTQEDAVRHLEHAKAHFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKLSSRVKMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLSAVDIYAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQVLGAAINIYANKHKERPDRLIDMLTSSHRKVLACVVCGRLKSAFQIASKSGSVADVQYVAHQALHANSHTVLDMCKQWLAKYM", "length": 2487, "header": "tr|F4ISN0-1|F4ISN0_ARATH Isoform 1 of Zinc finger FYVE domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ISN0-1" }, "locus": { "chromosome": "2", "start_pos": 10956263, "end_pos": 10972951, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G25730.3", "url": "https://www.ensemblgenomes.org/id/AT2G25730.3" }, { "database": "Ensembl Peptide", "id": "AT2G25730.3", "url": "https://www.ensemblgenomes.org/id/AT2G25730.3" } ] } }, { "isoform_ac": "Q9SL90-1", "url": "https://www.uniprot.org/uniprotkb/F4ISN0/entry#Q9SL90-1", "sequence": { "sequence": "MDKETEILSRLAANHLHLAQFEPLKATLLALRVRNPDLALTILQTIVSNAGRFDNVLWSRSCPSPSLLSFLSTIELLRFENPTSPWGFDSETLSLRADFLLMVQVLIDRVTERIKEDEESEDENSGLGNCLRVLQGVLELGVERLKFVVDTSSSEGSNKIEEDAVVSLRSIVLDYSDVFDALCCNIQRQLAGCESYGTCLVEEVQGEEQRKEMNEATCIGSPELDNINVFALIQRNVQLAQLDAMKTKLDEGDERGAADRIRYLHLDYGVEKENYHAVLKALLSRVMEKKDEYGDSWHMVRQNLLFMYKEALSSNCGDLVQMIQGIQDDMLLPHSQLHLSLDNEQIPLPLECFRRYLVDLKTERNIEDKSSPMSRAINSCLRDMYHYARISGSHVLECVMCAALSSVKKEKLQEANDVLTLFPRLRPLVASMGWDLLPGKTATRRKLMRLLWTSDSQALRLEESSLYGNQTDELELASFAACVNSGKSWTPKASFLMHGNVSSAHDDAEVDPFVENLVLERLSAQSPLRVLFDVVPGIKFQDAISLISMQPIASTAEAWKRIEDIELMHMRYALEAIVLALGAMEEAMKDETDASHRVVFYHLKDLTNHLEAIKNVPRKIMMVNIVISLLHIDDIRLSSTQSASSACFSEKSNTPGLDPGDLGTEGEKEIVISFTKQLLDVLRRNLPSHPIEQECQLDGNYSTDGRQALEWRVSMAKRFIEDCEWRLSVMQHLLPLSERQWGLKEVLSILRAAPEKLLNLCMQRAKYDIGEEAVNRFALSAEDKATLELAEWVDNAFKGTLVEDVMSRTAEGAAAVQDLDFHSLGSQLSPLAMVLLFAQSQVMLSEIYPGGAPKVGFTYWDQVHEVAIISVLRRILKRLQEFLEQDDPQILQASFSGDTIISSCTESHRQGQKDRALAMLHQMIEDAHRGKRQFLSGKLHNLARALADEKPEVDVLKGDGSDMAVEKDGVLGLGLKYTKQSPGSANRAVDGNPVSHETEDKGKKSFGPLSNKTSTYLSQFILYTAAIGDIVDGTDTTHDFNFFSLVYEWPKDLLTRLVFDRSSTDAAAKVAEVMSADFVHEVISACVPPVYPPRSGHGWACIPVIPTTPCSHSEGKVLSPSIEAKPNCYVRSSATPGVPLYPLQLDVIRHLVKISPVRAVLACVFGGSILYNGSDSIISSSLNDEFPSSPDADRLFYEFSLDQSERYPTLNRWIQMQTNLHRVSEFVVTPKQKPDDTRIKPDERTGIKRLLEHDSDSESDTEETFSKNNIQPALTDGSARDGGSFENGVCRTDPTVFLSFDWENEVPYEKAVNRLIDEGKLMDALALSDRFLRNGASDWLLQLLIKSREENPSTSGRSQGYGGQSNSWQYCLRLKDKQLAATLALKCCIGDKLCRSTATYFRQMIAIIAGKRLSFFLLFEIMFGSWYARCVTLKNLNGKQVEAECKEDPEGLALRLAGKGAVSAALEVAESAGLSIDLRRELQGRQLVKLLTTDPLNGGGPAEASRFLSSLQDSADALPVVMGAMQLLPDLRSKQLLVHFFLKRRDSNLSDLEVARLNSWALGLKVLAALPLPWQQRCSSLHEHPNLIFEALLMRKQLQYASLILKEFPALRDNNVIMAYAAKAISVTIIPPPREPRITVSASRLRQKSRAGPAVKASFTSSLSNFQREARRAFSWAPRNAENRTTSKDVYRKRKNSGLGASERAAWEAMTGIQEDQGSSYSADGQDRLPSVSIAEEWMLTGDKTKDEGVRASHKYESTPDIILFKALLSLCSDELVSARSAMDLCISQMKNVLSSKQLSEGASVETIGRAYHATEAFVQGLSYAKSLLRKLLGTTESTNNNGERSRDVDDISSDAGSSSVGSQSTDEPSDVLSLTEIWLGRAELLQSLLGSGISTSLDDIADQLSSECLRDRLISDERYSMAVYMCKKCKIDVFPVWKAWGLALLRMERYAQARVKFKQAFQLKGEDIPDVIQEIINTIEGGPPVDVSIVRSMYDHLAKSAPTILDDSLSADSYLNVLHMPSTFPRSERSRRSLESEKNSSVPGSDFEDGPRSNLDTTRYSECTNYLQEHARQNLLGFMFRHGHFKDACMLFFPQSGLPPPLQTSSVGAVSTSSSPQRTDPLATEYGTIESLCEFCVGYGAISSLEEVITERLESAKNQDQAINQYIAGALTRICAFFEINRHFNYLYKFLVLKKDYVTSGYCCIQLFMNSTTQEDAVRHLEHAKKYWSLTILGVQAHFEEALTARHRGSDSKKLVTKGVRGKSAAEKLSEETLVKLSSRVKMQIDVVKSFSDSEGAPWKHSLFGNPNDSETSRRRCEIVETLVEKNFDLAYSVIYEFKLSAVDIYAGVATSLADRKKGSQLTELFKNIKGTIQDDDWDQVLGAAINIYANKHKERPDRLIDMLTSSHRKVLACVVCGRLKSAFQIASKSGSVADVQYVAHQALHANSHTVLDMCKQWLAKYM", "length": 2464, "header": "tr|Q9SL90-1|F4ISN0_ARATH Computationally mapped isoform of Zinc finger FYVE domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4ISN0-1" }, "locus": { "chromosome": "2", "start_pos": 10956302, "end_pos": 10972729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G25730.1", "url": "https://www.ensemblgenomes.org/id/AT2G25730.1" }, { "database": "Ensembl Peptide", "id": "AT2G25730.1", "url": "https://www.ensemblgenomes.org/id/AT2G25730.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1167, "start_aa": "Thr", "end_pos": 1167, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1167", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 1151, "end_pos": 1151, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "iPTMnet", "id": "Q9SL90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SL90" } ], "site_lbl": "Ser1151" }, { "start_pos": 1261, "end_pos": 1261, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "iPTMnet", "id": "Q9SL90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SL90" } ], "site_lbl": "Thr1261" }, { "start_pos": 1287, "end_pos": 1287, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "iPTMnet", "id": "Q9SL90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SL90" } ], "site_lbl": "Ser1287" }, { "start_pos": 1289, "end_pos": 1289, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "iPTMnet", "id": "Q9SL90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SL90" } ], "site_lbl": "Ser1289" }, { "start_pos": 1291, "end_pos": 1291, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "iPTMnet", "id": "Q9SL90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SL90" } ], "site_lbl": "Ser1291" }, { "start_pos": 1675, "end_pos": 1675, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SL90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SL90" } ], "site_lbl": "Ser1675" }, { "start_pos": 1698, "end_pos": 1698, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "iPTMnet", "id": "Q9SL90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SL90" } ], "site_lbl": "Ser1698" }, { "start_pos": 1709, "end_pos": 1709, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1709" }, { "start_pos": 1731, "end_pos": 1731, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "iPTMnet", "id": "Q9SL90", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SL90" } ], "site_lbl": "Ser1731" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1I9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1I9" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1I9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1I9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "F4ISN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISN0" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "pathway": [ { "id": "ath:AT2G25730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G25730", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4ISN0", "url": "https://www.uniprot.org/uniprotkb/F4ISN0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1043, "end_pos": 1045, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1204, "end_pos": 1206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1582, "end_pos": 1584, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1717, "end_pos": 1719, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2074, "end_pos": 2076, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2245, "end_pos": 2247, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2332, "end_pos": 2334, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 514, "end_pos": 516, "annotation": "n_glycosylation_sequon" }, { "start_pos": 714, "end_pos": 716, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4ISN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ISN0" }, { "id": "PF25569", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25569" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ZFYVE26-like TPR repeats", "eco_id": "ECO_0000259", "start_pos": 2366, "end_pos": 2484, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1167 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 1151, 1261, 1287, 1289, 1291, 1675, 1698, 1709, 1731 ], "sequon_annotation_sites": [ { "start_pos": 1043, "end_pos": 1045 }, { "start_pos": 1204, "end_pos": 1206 }, { "start_pos": 1582, "end_pos": 1584 }, { "start_pos": 1717, "end_pos": 1719 }, { "start_pos": 2074, "end_pos": 2076 }, { "start_pos": 2245, "end_pos": 2247 }, { "start_pos": 2332, "end_pos": 2334 }, { "start_pos": 469, "end_pos": 471 }, { "start_pos": 514, "end_pos": 516 }, { "start_pos": 714, "end_pos": 716 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 9 }, { "field": "total_sites", "count": 9 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IRD3-1", "uniprot_ac": "F4IRD3", "uniprot_id": "F4IRD3_ARATH", "mass": { "chemical_mass": 82803.0, "monoisotopic_mass": 82803.0 }, "refseq": { "ac": "NP_178872", "name": "MAK10 homologue", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178872" }, "gene_names": [ { "name": "MAK10", "type": "recommended", "evidence": [ { "id": "F4IRD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" } ] }, { "name": "ATMAK10", "type": "synonym", "evidence": [ { "id": "NP_178872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178872" }, { "id": "F4IRD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" } ] }, { "name": "F15K19.7", "type": "synonym", "evidence": [ { "id": "NP_178872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178872" }, { "id": "F4IRD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" } ] }, { "name": "F15K19_7", "type": "synonym", "evidence": [ { "id": "NP_178872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178872" }, { "id": "F4IRD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" } ] }, { "name": "MAK10 homologue", "type": "synonym", "evidence": [ { "id": "NP_178872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178872" }, { "id": "F4IRD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" } ] }, { "name": "MAK10", "type": "synonym", "evidence": [ { "id": "NP_178872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178872" } ] } ], "protein_names": [ { "name": "MAK10 homologue", "type": "synonym", "evidence": [ { "id": "NP_178872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178872" }, { "id": "F4IRD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRD3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IRD3", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "MAK10", "url": "https://www.uniprot.org/uniprotkb/F4IRD3", "locus": { "chromosome": "CP002685.1", "start_pos": 4341105, "end_pos": 4347974, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT2G11000", "url": "https://www.ensemblgenomes.org/id/AT2G11000" } ] } } ], "crossref": [ { "id": "F4IRD3", "url": "https://alphafold.ebi.ac.uk/entry/F4IRD3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G11000", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G11000", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "815566", "url": "https://www.ncbi.nlm.nih.gov/gene/815566", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057982", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057982", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G11000", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G11000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QMEWIVQ", "url": "https://omabrowser.org/oma/group/QMEWIVQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21373", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21373", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21373:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21373:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04112", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04112", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25789", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25789", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_178872", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178872", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G11000", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G11000", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B1L2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1L2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1N2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1N2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1N2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1N2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IRD2", "url": "https://www.uniprot.org/uniprotkb/F4IRD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IRD2-1", "url": "https://www.uniprot.org/uniprotkb/F4IRD2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IRD3", "url": "https://www.uniprot.org/uniprotkb/F4IRD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IRD3-1", "url": "https://www.uniprot.org/uniprotkb/F4IRD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSVREDEDSSSPIHHDSKTSSSIPSGDNNSVWADVSPLLSAACSDLQEGELINGDNFNLFAAMSALEIMDPKMDSGMVSTFYSIDEAIESGFAPVPISSDSTVNVQSIIDIMDHLLACEATWHMGHSLAQTVFSCIYVLRPERTSSQALLHSYCRVIRATCRAVVSVVSDARTNEEEDLFTMTYGLPFSGEEDAKGLLLLNAVEETICRQLRACKATRRRMLEDAELEPLQSNPHLEESFCKSLLCRIRFRKHFLHALNCMRRPQGRGLELARKHIGYCISELDSVLDSAEFLRLDIFENGVNEIEESTTASGRSPIGFDPTLNKRLSAPTPPRAIKLLSWKKAIDYYVKLLHNLDKICAFSLEPDLEAVLEFVIQFQKSRPDLVARAHLQLLLVQDGKLYGRDTFLTICARSLALDVSKNHGLHTNEYILQLNQLMVNLLKILCANTPWQRRKLGKILNDWSVFHVQMGIAVGQMMQQDTSRSSKNGDKSLLILNHIYGGLEEQINWVAIRFLMLGFDLDLYSPSEYCMVYWYMYIILWKLAERARFRVLIVVNTEERKAKRNKEYSRDMAREDRISLWVLFLKCQTCLAQGLTVMIAALRNEGMSLKSQGPFNTENEKFIQHFELLQKASLPEYDAYESFSKSTSHARLDYLPMYEYFHDAQKIAKDIKVGYANDPDKLAEVTGLEKVAERNIVAVNLFCQDRSLKVSFEFTHHPYFATAVVRRS", "length": 728, "header": "tr|F4IRD3-1|F4IRD3_ARATH Isoform 1 of MAK10 homologue OS=Arabidopsis thaliana OX=3702 GN=MAK10 PE=1 SV=1 CANONICAL=F4IRD3-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B1L2-1", "url": "https://www.uniprot.org/uniprotkb/F4IRD3/entry#A0A1P8B1L2-1", "sequence": { "sequence": "MQSVREDEDSSSPIHHDSKTSSSIPSGDNNSVWADVSPLLSAACSDLQEGELINGDNFNLFAAMSALEIMDPKMDSGMVSTFYSIDEAIESGFAPVPISSDSTVNVQSIIDIMDHLLACEATWHMGHSLAQTVFSCIYVLRPERTSSQALLHSYCRVIRATCRAVVSVVSDARTNEEEDLFTMTYGLPFSGEEDAKGLLLLNAVEETICRQLRACKATRRRMLEDAELEPLQSNPHLEESFCKSLLCRIRFRRGLELARKHIGYCISELDSVLDSAEFLRLDIFENGVNEIEESTTASGRSPIGFDPTLNKRLSAPTPPRAIKLLSWKKAIDYYVKLLHNLDKICAFSLEPDLEAVLEFVIQFQKSRPDLVARAHLQLLLVQDGKLYGRDTFLTICARSLALDVSKNHGLHTNEYILQLNQLMVNLLKILCANTPWQRRKLGKILNDWSVFHVQMGIAVGQMMQQDTSRSSKNGDKSLLILNHIYGGLEEQINWVAIRFLMLGFDLDLYSPSEYCMVYWYMYIILWKLAERARFRVLIVVNTEERKAKRNKEYSRDMAREDRISLWVLFLKCQTCLAQGLTVMIAALRNEGMSLKSQGPFNTENEKFIQHFELLQKASLPEYDAYESFSKSTSHARLDVYLNLLPEAYT", "length": 649, "header": "tr|A0A1P8B1L2-1|F4IRD3_ARATH Computationally mapped isoform of MAK10 homologue OS=Arabidopsis thaliana OX=3702 GN=MAK10 PE=1 SV=1 CANONICAL=F4IRD3-1" }, "locus": { "chromosome": "2", "start_pos": 4341783, "end_pos": 4347856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G11000.4", "url": "https://www.ensemblgenomes.org/id/AT2G11000.4" }, { "database": "Ensembl Peptide", "id": "AT2G11000.4", "url": "https://www.ensemblgenomes.org/id/AT2G11000.4" } ] } }, { "isoform_ac": "A0A1P8B1N2-1", "url": "https://www.uniprot.org/uniprotkb/F4IRD3/entry#A0A1P8B1N2-1", "sequence": { "sequence": "MKIRLLRFITTLKPLLLSLPVIITPSGPMYHLSSPPPALIFKKIMDPKMDSGMVSTFYSIDEAIESGFAPVPISSDSTVNVQSIIDIMDHLLACEATWHMGHSLAQTVFSCIYVLRPERTSSQALLHSYCRVIRATCRAVVSVVSDARTNEEEDLFTMTYGLPFSGEEDAKGLLLLNAVEETICRQLRACKATRRRMLEDAELEPLQSNPHLEESFCKSLLCRIRFRKHFLHALNCMRRPQGRGLELARKHIGYCISELDSVLDSAEFLRLDIFENGVNEIEESTTASGRSPIGFDPTLNKRLSAPTPPRAIKLLSWKKAIDYYVKLLHNLDKICAFSLEPDLEAVLEFVIQFQKSRPDLVARAHLQLLLVQDGKLYGRDTFLTICARSLALDVSKNHGLHTNEYILQLNQLMVNLLKILCANTPWQRRKLGKILNDWSVFHVQMGIAVGQMMQQDTSRSSKNGDKSLLILNHIYGGLEEQINWVAIRFLMLGFDLDLYSPSEYCMVYWYMYIILWKLAERARFRVLIVVNTEERKAKRNKEYSRDMAREDRISLWVLFLKCQTCLAQGLTVMIAALRNEGMSLKSQGPFNTENEKFIQHFELLQKASLPEYDAYESFSKSTSHARLDYLPMYEYFHDAQKIAKDIKVGYANDPDKLAEVTGLEKVAERNIVAVNLFCQDRSLKVSFEFTHHPYFATAVVRRS", "length": 703, "header": "tr|A0A1P8B1N2-1|F4IRD3_ARATH Computationally mapped isoform of MAK10 homologue OS=Arabidopsis thaliana OX=3702 GN=MAK10 PE=1 SV=1 CANONICAL=F4IRD3-1" }, "locus": { "chromosome": "2", "start_pos": 4341123, "end_pos": 4347948, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G11000.3", "url": "https://www.ensemblgenomes.org/id/AT2G11000.3" }, { "database": "Ensembl Peptide", "id": "AT2G11000.3", "url": "https://www.ensemblgenomes.org/id/AT2G11000.3" } ] } }, { "isoform_ac": "F4IRD2-1", "url": "https://www.uniprot.org/uniprotkb/F4IRD3/entry#F4IRD2-1", "sequence": { "sequence": "MQSVREDEDSSSPIHHDSKTSSSIPSGDNNSVWADVSPLLSAACSDLQEGELINGDNFNLFAAMSALEIMDPKMDSGMVSTFYSIDEAIESGFAPVPISSDSTVNVQSIIDIMDHLLACEATWHMGHSLAQTVFSCIYVLRPERTSSQALLHSYCRVIRATCRAVVSVVSDARTNEEEDLFTMTYGLPFSGEEDAKGLLLLNAVEETICRQLRACKATRRRMLEDAELEPLQSNPHLEESFCKSLLCRIRFRRGLELARKHIGYCISELDSVLDSAEFLRLDIFENGVNEIEESTTASGRSPIGFDPTLNKRLSAPTPPRAIKLLSWKKAIDYYVKLLHNLDKICAFSLEPDLEAVLEFVIQFQKSRPDLVARAHLQLLLVQDGKLYGRDTFLTICARSLALDVSKNHGLHTNEYILQLNQLMVNLLKILCANTPWQRRKLGKILNDWSVFHVQMGIAVGQMMQQDTSRSSKNGDKSLLILNHIYGGLEEQINWVAIRFLMLGFDLDLYSPSEYCMVYWYMYIILWKLAERARFRVLIVVNTEERKAKRNKEYSRDMAREDRISLWVLFLKCQTCLAQGLTVMIAALRNEGMSLKSQGPFNTENEKFIQHFELLQKASLPEYDAYESFSKSTSHARLDYLPMYEYFHDAQKIAKDIKVGYANDPDKLAEVTGLEKVAERNIVAVNLFCQDRSLKVSFEFTHHPYFATAVVRRS", "length": 713, "header": "tr|F4IRD2-1|F4IRD2_ARATH Computationally mapped isoform of MAK10 homologue OS=Arabidopsis thaliana OX=3702 GN=MAK10 PE=1 SV=1 CANONICAL=F4IRD3-1" }, "locus": { "chromosome": "2", "start_pos": 4341123, "end_pos": 4347962, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G11000.2", "url": "https://www.ensemblgenomes.org/id/AT2G11000.2" }, { "database": "Ensembl Peptide", "id": "AT2G11000.2", "url": "https://www.ensemblgenomes.org/id/AT2G11000.2" } ] } }, { "isoform_ac": "F4IRD3-1", "url": "https://www.uniprot.org/uniprotkb/F4IRD3/entry#F4IRD3-1", "sequence": { "sequence": "MQSVREDEDSSSPIHHDSKTSSSIPSGDNNSVWADVSPLLSAACSDLQEGELINGDNFNLFAAMSALEIMDPKMDSGMVSTFYSIDEAIESGFAPVPISSDSTVNVQSIIDIMDHLLACEATWHMGHSLAQTVFSCIYVLRPERTSSQALLHSYCRVIRATCRAVVSVVSDARTNEEEDLFTMTYGLPFSGEEDAKGLLLLNAVEETICRQLRACKATRRRMLEDAELEPLQSNPHLEESFCKSLLCRIRFRKHFLHALNCMRRPQGRGLELARKHIGYCISELDSVLDSAEFLRLDIFENGVNEIEESTTASGRSPIGFDPTLNKRLSAPTPPRAIKLLSWKKAIDYYVKLLHNLDKICAFSLEPDLEAVLEFVIQFQKSRPDLVARAHLQLLLVQDGKLYGRDTFLTICARSLALDVSKNHGLHTNEYILQLNQLMVNLLKILCANTPWQRRKLGKILNDWSVFHVQMGIAVGQMMQQDTSRSSKNGDKSLLILNHIYGGLEEQINWVAIRFLMLGFDLDLYSPSEYCMVYWYMYIILWKLAERARFRVLIVVNTEERKAKRNKEYSRDMAREDRISLWVLFLKCQTCLAQGLTVMIAALRNEGMSLKSQGPFNTENEKFIQHFELLQKASLPEYDAYESFSKSTSHARLDYLPMYEYFHDAQKIAKDIKVGYANDPDKLAEVTGLEKVAERNIVAVNLFCQDRSLKVSFEFTHHPYFATAVVRRS", "length": 728, "header": "tr|F4IRD3-1|F4IRD3_ARATH Isoform 1 of MAK10 homologue OS=Arabidopsis thaliana OX=3702 GN=MAK10 PE=1 SV=1 CANONICAL=F4IRD3-1" }, "locus": { "chromosome": "2", "start_pos": 4341105, "end_pos": 4347974, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G11000.1", "url": "https://www.ensemblgenomes.org/id/AT2G11000.1" }, { "database": "Ensembl Peptide", "id": "AT2G11000.1", "url": "https://www.ensemblgenomes.org/id/AT2G11000.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 332, "start_aa": "Thr", "end_pos": 332, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr332", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1L2" }, { "database": "iPTMnet", "id": "F4IRD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IRD3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser12" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1L2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1L2" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1L2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1L2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IRD3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IRD3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1L2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1L2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G11000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G11000", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NYK0-1", "protein_name": "N-alpha-acetyltransferase 35, NatC auxiliary subunit", "gene_name": "NAA35", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVMKASVEDDDSGWELGMPDKMEKSNTDWVDITQDFEEACRELKLGELLHDKLFGLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTSPELIGIMDTCFCCLITWLEGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANSVTDLRVTGMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAVFSRVKFTRVLLTVLIAFTKKETSAVAEAQKLMTQAADLLSAIHNSLHHGIQAQNDTTKGDHPIMMGFEPLVNQRLLPPTFPRYAKIIKREEMVNYFSKLIDRIKTVCEVVNLTNLHCILDFFCEFSEQSPCVLSRSLLQTTFLVDNKKVFGTHLMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDYIDSFVTHCVRPFCSLIQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHSMLLKQEPQRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADSSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQNMCAGMYKTMIAFDMDGKVRKPKFELDSEQVRYEHRFAPFNSVITPPPVHYLQFKEMSDLNKYSPPPQSADLYMAASKHFQQAKMILENIPNPDHEVNRILKVAKPNIVVMKLLAGGHKKDSKVPPEFDFSPHKYFPVVKLV", "length": 725 }, "evidence": [ { "id": "F4IRD3", "url": "https://omabrowser.org/oma/group/F4IRD3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1S4I0-1", "protein_name": "N-alpha-acetyltransferase 35, NatC auxiliary subunit", "gene_name": "NAA35", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVMKASVEDDDSGWELSTPEKMEKSNTNWVDITQDFEEACRELKLGELLHDKLFGLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTLPELIGIMDTCFCCLITWLEGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANSVTDLRVTGMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAVFSRVKFTRVLLTVLIAFTKKETSAVAEAQKLMVQAADLLSAIHNSLHHGIQAQNDTTKGDHPIMMGFEPLVNQRLLPPTFPRYAKIIKREEMVNYFARLIDRIKTVCEVVNLTNLHCILDFFCEFSEQSPCVLSRSLLQTTFLVDNKKVFGTHLMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDCIDSFVTHCVRPFCSLIQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHTMLLKQEPQRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADGSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQNMCAGMFKTMVAFDMDGKVRKPKFELDSEQVRYEHRFAPFNSVMTPPPVHYLQFKEMSDLNKYSPPPQSPELYVAASKHFQQAKMILENIPNPDHEVSRILKVAKPNFVVMKLLAGGHKKESKVPPEFDFSAHKYFPVVKLV", "length": 725 }, "evidence": [ { "id": "F4IRD3", "url": "https://omabrowser.org/oma/group/F4IRD3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "G3IAW2-1", "protein_name": "N-alpha-acetyltransferase 35, NatC auxiliary subunit", "gene_name": "Naa35", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVMKTAVDDDSAWELGVPEKMEKSNTSWVDITQDFEDACRELKLGELLHDKLFGLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTLPELIGIMDTCFCCLITWLEGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANSVTDLRVTGMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAAFSRVKFTRVLLTVLIAFTKKETSAVAEAQKLMVQAADLLSAIHTSLHHGIQAQNGTTKGDHPIMMGFEPLVNQRLLPPTFPRYAKIIKREEMVNYFSRLIDRIKTVCEVVNLPNLHCILDFFCEFSEQSPCVLSRSLLQTTFLVDNKKVFGTHLMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDCIDSFVTHCVRPFCSLVQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHTMLLKQEPQRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADGSQMAEERIMEEQQKGRSSKKTKKRKKVRPLSREITMSQAYQNMCAGMFKTMVAFDMDGKVRKPKFELDSEQVRYEHRFAPFNSVMTPPPVHYLQFKEMSDLNKYSPPPQSPELYVAASKHFQQAKMILENIPNPDREVSRILKVAKPNFVVMKLLAGGHKKESKVPPEFDFSVHKYFPVVKLV", "length": 724 }, "evidence": [ { "id": "F4IRD3", "url": "https://omabrowser.org/oma/group/F4IRD3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q02197-1", "protein_name": "N-alpha-acetyltransferase 35, NatC auxiliary subunit", "gene_name": "MAK10", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MEVDSILGSLSITDDFDQLVDVTSLFDELCSKLKPEAIVKDPRFDLFEGTHSLEVNNSKLDSSLIELTAEEIEFDVNVAYDPPLASVAAIADRLLRCVISWLNDYQTLPTTVLSCRYTESLLSSLVKGTTAGSSWCTGNILYDKVLGSCILGVCYLTKFVQKLLSAGIVFEEEDLNFNNMGFNTFDNLPGQDVVINSLTESLQILEAYSDDSLHLTMLKHILKIIICLVHLEDHLTDYSTKTSHLDELIENANSVNGIFPQLQLSPPKGAFSTYIQKHRSNQFPPRKITKLPTDYSGFITLANDVKTILLVDKAESALETYQFAKFFNKLEQRHVIARILFPLFFIRDDRTVLGKFSYTQFYLLHVKEFSAQTPSEFESSIGNELIQESSNMLLEWYQNCSQNTCRYRQGFNRQLILWDSLQAQFESVNSQVYCSWTYFMKLSSMIEFSLKGFDLDIYKPFEAYSMFWYVYYLSHHLETFLKDSQNDIESNINAIHSMNKKLKKLKAGEKKDQLRLKYRFAMDNEMEQLQATKQFLNYLLKEINITKSLCLIEVFQFAILKSFGLIDNKNSTPSKFSNERLIHNLRFKPFNSIGVPELPEYEVFQQTLKDFVIEEKGAAFDIKLERATNFIETEVRNVVSSIDEIMQGIKGGDNNGVLVTGTRLVQELSLEYYCKLKHTSKALSVNSKVIVNTLKKNIKNKDSHEYKVELVHTTEGWNYFPIQTLRIKQDRYK", "length": 733 }, "evidence": [ { "id": "F4IRD3", "url": "https://omabrowser.org/oma/group/F4IRD3/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q55F07-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNPKLDTRAKGEHFYMPEQLFDKGSIPKDSTLDRKQIIKIIDRLVGLEISWIEGESLPMTLFSCMYLHFPQRLENQMFSTYVNSLLATCDAINQIISRGDVCCEEDFNLSDFNLTLLYPANQHMVVNIRQLEELIDQLDQQITTEKSKPIKDLDELKILVSLYNRILFRKLFYIIIFSLSVSNLVLAIKSIKEILPVIEFLKNDGYSNRDDIIVPTEIFNGALVSKLYSSVGAVSQEKTYTAAISSFEKLFNDFQTLFKMPHLLDSTIQRQQLLQLHQQQQQHQQQQQNITTDQDNNNNNNNNETTAAPVVSGKNKSKVEKSESIKIGAILDYHFYFSRPSPNIVTRSVLRRLLFPLPLGQFFKNDTIEESLIEWMHEFGIPMDKLVNREKEGVPMFIDTVSKVIQKLFVHMALNRARQRRKLKVSLFELSLLQNEADILDTKIAKEPTNVSIYFGSFIFHLKLRVMQHYLFLGFELDIYSYHEFPSVYYYLDYFYNIQSNVSNYVYKLNYNNNINNNNNNNNNNSSSNSSQQQQQQQQSNKKNKNKNKNKNTQSNNNNNNNNIQQQQQQQAPPPPPPTIERTLLVAYHTAVRAMFRFLVVLKQNGKIVDPVCDFGNDDLRFMKKFEPFFNPPYQQPEPLTNEICKNSTKTNEPWISLVITTLDILKQSKSAIDVLLLPESKFNVPIPFYQVEEAKQLQRSILSMRLQIQKLLPSFDLSKLTIEKVLALPIPKFSVQIETKPYFPNINIKLD", "length": 752 }, "evidence": [ { "id": "F4IRD3", "url": "https://omabrowser.org/oma/group/F4IRD3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5VZE5-1", "protein_name": "N-alpha-acetyltransferase 35, NatC auxiliary subunit", "gene_name": "NAA35", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVMKASVDDDDSGWELSMPEKMEKSNTNWVDITQDFEEACRELKLGELLHDKLFGLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLTLPELIGIMDTCFCCLITWLEGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANSVTDLRVTGMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAVFSRVKFTRVLLTVLIAFTKKETSAVAEAQKLMVQAADLLSAIHNSLHHGIQAQNDTTKGDHPIMMGFEPLVNQRLLPPTFPRYAKIIKREEMVNYFARLIDRIKTVCEVVNLTNLHCILDFFCEFSEQSPCVLSRSLLQTTFLVDNKKVFGTHLMQDMVKDALRSFVSPPVLSPKCYLYNNHQAKDCIDSFVTHCVRPFCSLIQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHTMLLKQEPQRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADGSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQNMCAGMFKTMVAFDMDGKVRKPKFELDSEQVRYEHRFAPFNSVMTPPPVHYLQFKEMSDLNKYSPPPQSPELYVAASKHFQQAKMILENIPNPDHEVNRILKVAKPNFVVMKLLAGGHKKESKVPPEFDFSAHKYFPVVKLV", "length": 725 }, "evidence": [ { "id": "F4IRD3", "url": "https://omabrowser.org/oma/group/F4IRD3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6DKG0-1", "protein_name": "N-alpha-acetyltransferase 35, NatC auxiliary subunit", "gene_name": "Naa35", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVMKAAVDDDASGWELNVPEKMEKSSTSWVDITQDFEDACRELKLGELLHDKLFGLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAVKDGTIKIKDLSLPELIGIMDTCFCCLITWLEGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANGVTDLRVTGMLKDVEDDMQRRVKSTRSRQGEERDPEVELEHQQCLAAFSRVKFTRVLLTVLIAFTKKETSAVAEAQKLMVQAADLLSAIHTSLHHGIQAQNGTTKGDHPIMMGFEPLVNQRLLPPTFPRYAKIIKREEMVNYFSRLIDRIKTVCEVVNLPNLHCILDFFCEFSEQSPCVLSRSLLQTTFLVDNKKVFGTHLMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDCIDSFVTHCVRPFCSLVQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHTMLLKQEPQRQHLACLGTWVLYHSLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADGSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQNMCAGMFKTMVAFDMDGKVRKPKFELDSEQVRYEHRFAPFNSVMTPPPVHYLQFKEMSDLSKYSPPPQPPELYVAASKHFQQAKMILESIPNADREVSRILKVAKPNFVVMKLLAGGHKKESKVPPEFDFSVHKYFPVVKLV", "length": 725 }, "evidence": [ { "id": "F4IRD3", "url": "https://omabrowser.org/oma/group/F4IRD3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6PHQ8-1", "protein_name": "N-alpha-acetyltransferase 35, NatC auxiliary subunit", "gene_name": "Naa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVMKATVDDDASGWELGVPEKMEKSSTSWVDITQDFEDACRELKLGELLHDKLFGLFEAMSAIEMMDPKMDAGMIGNQVNRKVLNFEQAIKDGTIKIKDLSLPELIGIMDTCFCCLITWLEGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANSVTDLRVTGMLKDVEDDLQRRVKSTRSRQGEERDPEVELEHQQCLAAFSRVKFTRVLLTVLIAFTKKETSAVAEAQKLMVQAADLLSAIHTSLHHGIQAQNGTTKGDHPIMMGFEPLVNQRLLPPTFPRYAKIIKREEMVNYFSRLIDRIKTVCEVVNLPNLHCILDFFCEFSEQSPCVLSRSLLQTTFLVDNKKVFGTHLMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDCIDSFVTHCVRPFCSLVQIHGHNRARQRDKLGHILEEFATLQDEAEKVDAALHTMLLKQEPQRQHLACLGTWVLYHNLRIMIQYLLSGFELELYSMHEYYYIYWYLSEFLYAWLMSTLSRADGSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQNMCAGMFKTMVAFDMDGKVRKPKFELDSEQVRYEHRFAPFNSVMTPPPVHYLQFKEMSDLNKYSPPPQSPELYVAASKHFQQAKMILENIPNPDREVSRILKVAKPNFVVMKLLAGGHKKESKVPPEFDFSVHKYFPVVKLV", "length": 725 }, "evidence": [ { "id": "F4IRD3", "url": "https://omabrowser.org/oma/group/F4IRD3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W1A2-1", "protein_name": "N-alpha-acetyltransferase 35, NatC auxiliary subunit homolog", "gene_name": "Naa35", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MYPSTLPAEADPSTMNGSSVAEPPDFQAATAAAAAAARASSLEQDEWSVGECGFLDPDVQRTMRSGSAAEDITQYPMHGWVDVTKEFHDACAELQPGELAQDMLFGLFEAMSAIEIMDPKMDVGMGFDKQDLPPPSFEAAIATGAIKLDDLTPSELIGIYDALFSCLVSWLEGNSMDQVLFTCLYLHAPAQIKDKALRVFCTAVRNLIVVIKKIIAVAAVNEEEDFQLYGNSALLAAEKAQPATVYSSLKDVEDELIRKCKKLTSTEDWMAVVHRLRFMRHLFQVIYHVEQMASNDTVDDKVDIYKILLVASEMLPGIRNTLDRGTQPEKGSDAPNPMGFSPRIHDRSQPPAFPRSIKIRDRPSSYQFLEEMISRFKYACKVTKYKDYYSALNFFIEYSKKSGQCILSRSVLQTLFSANMRMAHGKLPMKQFLRHSVQVFNSPPVLNAKHPVAADPKVQQHLENFFRYCINMNTFTQFIRICGFNRARQRDKLARLIENFDTIQVDAARLDSMMNQLANERAMEGNEPMATALKHSTHFSTWVLYNCFRAMLIFLMSGFELELYAVHEFLYIYWYPYEFLIGFLVSALTRTENILLAQEEYAEHQSKTQSGGSGAAKNRKAAKPKKNKKTQRPYRAEIVFYHALLSLCGGMYKAMGALTKDGRVRLPLSKFDNEEIRYNRRFLPFATLTSPPPVSYAEFKNVREHMMRHSVEDLYTYAAKHFDQARNVLESIQNPDQEMLDLLQIARTNFVVMNVLARGHQKEVKRQPEFDFSKHSYFPIIKLK", "length": 784 }, "evidence": [ { "id": "F4IRD3", "url": "https://omabrowser.org/oma/group/F4IRD3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "NatC complex", "id": "GO:0031417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031417", "evidence": [ { "database": "UniProtKB", "id": "F4IRD3", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IRD3", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IRD3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 728, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IRD3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IRD3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IRD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" }, { "id": "PF04112", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04112" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAA35-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 191, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4IRD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRD3" }, { "id": "PF25789", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25789" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAA35-like TPR repeats", "eco_id": "ECO_0000259", "start_pos": 359, "end_pos": 723, "start_aa": "Ile", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 332 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 12 ], "sequon_annotation_sites": [ { "start_pos": 29, "end_pos": 31 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IFM0-1", "uniprot_ac": "F4IFM0", "uniprot_id": "F4IFM0_ARATH", "mass": { "chemical_mass": 59811.0, "monoisotopic_mass": 59811.0 }, "refseq": {}, "gene_names": [ { "name": "F26H11.29", "type": "synonym", "evidence": [ { "id": "F4IFM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IFM0" } ] } ], "protein_names": [ { "name": "Phospholipase-like protein (PEARLI 4) family protein", "type": "synonym", "evidence": [ { "id": "F4IFM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IFM0", "url": "https://www.uniprot.org/uniprotkb/F4IFM0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IFM0", "locus": {} } ], "crossref": [ { "id": "F4IFM0", "url": "https://alphafold.ebi.ac.uk/entry/F4IFM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G20950", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G20950", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "816629", "url": "https://www.ncbi.nlm.nih.gov/gene/816629", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "A0A1P8B1V0", "url": "https://www.ebi.ac.uk/intact/interactors/id:A0A1P8B1V0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR007942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G20950", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G20950", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A1P8B1U9", "url": "https://www.orthodb.org/?gene=A0A1P8B1U9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B1V0", "url": "https://www.orthodb.org/?gene=A0A1P8B1V0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B1V4", "url": "https://www.orthodb.org/?gene=A0A1P8B1V4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B1V7", "url": "https://www.orthodb.org/?gene=A0A1P8B1V7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B1W5", "url": "https://www.orthodb.org/?gene=A0A1P8B1W5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B1X2", "url": "https://www.orthodb.org/?gene=A0A1P8B1X2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B1X9", "url": "https://www.orthodb.org/?gene=A0A1P8B1X9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B1Z7", "url": "https://www.orthodb.org/?gene=A0A1P8B1Z7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IFL9", "url": "https://www.orthodb.org/?gene=F4IFL9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IFM0", "url": "https://www.orthodb.org/?gene=F4IFM0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IFM1", "url": "https://www.orthodb.org/?gene=F4IFM1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35358", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35358", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35358:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35358:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05278", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05278", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G20950", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G20950", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B1U9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1U9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1U9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1U9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1V0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1V4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1V7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1W5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1W5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1W5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1W5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1X2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1X2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1X9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1X9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1X9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1Z7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1Z7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1Z7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IFL9", "url": "https://www.uniprot.org/uniprotkb/F4IFL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IFL9-1", "url": "https://www.uniprot.org/uniprotkb/F4IFL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IFM0", "url": "https://www.uniprot.org/uniprotkb/F4IFM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IFM0-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IFM1", "url": "https://www.uniprot.org/uniprotkb/F4IFM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IFM1-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFFHSREKRHGKRAGLFGHKSASKSNPSSPPHLAEGRSQPTTHFGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARLQTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 522, "header": "tr|F4IFM0-1|F4IFM0_ARATH Isoform 1 of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IFM0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B1U9-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#A0A1P8B1U9-1", "sequence": { "sequence": "MKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 474, "header": "tr|A0A1P8B1U9-1|F4IFM0_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9002843, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.6", "url": "https://www.ensemblgenomes.org/id/AT2G20950.6" }, { "database": "Ensembl Peptide", "id": "AT2G20950.6", "url": "https://www.ensemblgenomes.org/id/AT2G20950.6" } ] } }, { "isoform_ac": "A0A1P8B1V0-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#A0A1P8B1V0-1", "sequence": { "sequence": "MDFFHSREKRHGKRAGLFGHKSASKSNPSSPPHLAEGRSQPTTHFGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTVRFFLSRVSIYQSVKKMLKFKLLWFVQPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 547, "header": "tr|A0A1P8B1V0-1|F4IFM0_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003000, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.7", "url": "https://www.ensemblgenomes.org/id/AT2G20950.7" }, { "database": "Ensembl Peptide", "id": "AT2G20950.7", "url": "https://www.ensemblgenomes.org/id/AT2G20950.7" } ] } }, { "isoform_ac": "A0A1P8B1V4-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#A0A1P8B1V4-1", "sequence": { "sequence": "MHTILLYNGLWLIELSGVHAGLHTDPGMDFFHSREKRHGKRAGLFGHKSASKSNPSSPPHLAEGRSQPTTHFGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 547, "header": "tr|A0A1P8B1V4-1|F4IFM0_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003041, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.8", "url": "https://www.ensemblgenomes.org/id/AT2G20950.8" }, { "database": "Ensembl Peptide", "id": "AT2G20950.8", "url": "https://www.ensemblgenomes.org/id/AT2G20950.8" } ] } }, { "isoform_ac": "A0A1P8B1V7-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#A0A1P8B1V7-1", "sequence": { "sequence": "MYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARLQTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTVRFFLSRVSIYQSVKKMLKFKLLWFVQPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 413, "header": "tr|A0A1P8B1V7-1|F4IFM0_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003371, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.11", "url": "https://www.ensemblgenomes.org/id/AT2G20950.11" }, { "database": "Ensembl Peptide", "id": "AT2G20950.11", "url": "https://www.ensemblgenomes.org/id/AT2G20950.11" } ] } }, { "isoform_ac": "A0A1P8B1W5-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#A0A1P8B1W5-1", "sequence": { "sequence": "MKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARLQTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTVRFFLSRVSIYQSVKKMLKFKLLWFVQPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 503, "header": "tr|A0A1P8B1W5-1|F4IFM0_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003112, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.10", "url": "https://www.ensemblgenomes.org/id/AT2G20950.10" }, { "database": "Ensembl Peptide", "id": "AT2G20950.10", "url": "https://www.ensemblgenomes.org/id/AT2G20950.10" } ] } }, { "isoform_ac": "A0A1P8B1X2-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#A0A1P8B1X2-1", "sequence": { "sequence": "MKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARLQTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 476, "header": "tr|A0A1P8B1X2-1|F4IFM0_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003371, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.14", "url": "https://www.ensemblgenomes.org/id/AT2G20950.14" }, { "database": "Ensembl Peptide", "id": "AT2G20950.14", "url": "https://www.ensemblgenomes.org/id/AT2G20950.14" } ] } }, { "isoform_ac": "A0A1P8B1X9-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#A0A1P8B1X9-1", "sequence": { "sequence": "MVFILCSKLQPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARLQTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTVRFFLSRVSIYQSVKKMLKFKLLWFVQPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 469, "header": "tr|A0A1P8B1X9-1|F4IFM0_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003371, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.12", "url": "https://www.ensemblgenomes.org/id/AT2G20950.12" }, { "database": "Ensembl Peptide", "id": "AT2G20950.12", "url": "https://www.ensemblgenomes.org/id/AT2G20950.12" } ] } }, { "isoform_ac": "A0A1P8B1Z7-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#A0A1P8B1Z7-1", "sequence": { "sequence": "MYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 384, "header": "tr|A0A1P8B1Z7-1|F4IFM0_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003087, "end_pos": 9005944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.9", "url": "https://www.ensemblgenomes.org/id/AT2G20950.9" }, { "database": "Ensembl Peptide", "id": "AT2G20950.9", "url": "https://www.ensemblgenomes.org/id/AT2G20950.9" } ] } }, { "isoform_ac": "F4IFL9-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#F4IFL9-1", "sequence": { "sequence": "MDFFHSREKRHGKRAGLFGHKSASKSNPSSPPHLAEGRSQPTTHFGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARLQTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 505, "header": "tr|F4IFL9-1|F4IFL9_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003139, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.3", "url": "https://www.ensemblgenomes.org/id/AT2G20950.3" }, { "database": "Ensembl Peptide", "id": "AT2G20950.3", "url": "https://www.ensemblgenomes.org/id/AT2G20950.3" } ] } }, { "isoform_ac": "F4IFM0-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#F4IFM0-1", "sequence": { "sequence": "MDFFHSREKRHGKRAGLFGHKSASKSNPSSPPHLAEGRSQPTTHFGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARLQTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 522, "header": "tr|F4IFM0-1|F4IFM0_ARATH Isoform 1 of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003041, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.4", "url": "https://www.ensemblgenomes.org/id/AT2G20950.4" }, { "database": "Ensembl Peptide", "id": "AT2G20950.4", "url": "https://www.ensemblgenomes.org/id/AT2G20950.4" } ] } }, { "isoform_ac": "F4IFM1-1", "url": "https://www.uniprot.org/uniprotkb/F4IFM0/entry#F4IFM1-1", "sequence": { "sequence": "MDFFHSREKRHGKRAGLFGHKSASKSNPSSPPHLAEGRSQPTTHFGMKRSESEYAFPISDEQTTHWKPQQQASERIPNSHQRPPVYRYSTPERPREPDEDVTPRSNGSGSPFRSARTRTPDRRKRSSEITKELYERMYEADANHERGRDYSRERYEAEGNVTSRNRPSSPFHPSQSRSPPPHARTQRYNNGKDHFEGMYEADADITPRNSPPMSPVHQHTSYSPPPPFYSSSDDEDDNNSTYLFPEIATGRRSRGVSGSSTPVHYKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKHGDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSVLVD", "length": 503, "header": "tr|F4IFM1-1|F4IFM1_ARATH Computationally mapped isoform of Phospholipase-like protein (PEARLI 4) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFM0-1" }, "locus": { "chromosome": "2", "start_pos": 9003135, "end_pos": 9005938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20950.2", "url": "https://www.ensemblgenomes.org/id/AT2G20950.2" }, { "database": "Ensembl Peptide", "id": "AT2G20950.2", "url": "https://www.ensemblgenomes.org/id/AT2G20950.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 102, "end_pos": 102, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr102" }, { "start_pos": 108, "end_pos": 108, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser108" }, { "start_pos": 110, "end_pos": 110, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser110" }, { "start_pos": 145, "end_pos": 145, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser145" }, { "start_pos": 152, "end_pos": 152, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser152" }, { "start_pos": 185, "end_pos": 185, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser185" }, { "start_pos": 193, "end_pos": 193, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser193" }, { "start_pos": 195, "end_pos": 195, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser195" }, { "start_pos": 54, "end_pos": 54, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr54" }, { "start_pos": 59, "end_pos": 59, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser59" }, { "start_pos": 6, "end_pos": 6, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser6" }, { "start_pos": 88, "end_pos": 88, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr88" }, { "start_pos": 89, "end_pos": 89, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser89" }, { "start_pos": 90, "end_pos": 90, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr90" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1U9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1U9" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1V0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V0" }, { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1U9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1U9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B1W5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B1W5" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF04938", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G42510", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G42510", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B1V8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1W4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1W4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1W4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B1W9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"MATRFDTGESIGSGKTSISRDEFAEDSLKIVSLPPVENDDSVEEMISPKKQVKSSPFTSVFEKDGEIIHSDSIDISFSETTLEETVAMNVECPGVVVVSVPENGSTILEENKVGEEIKESSEISTTEGDRLGDDVLKIKDVVETDGFVVSISDMKESLNSEKKGQDSDGQRIVEAEKIILFAEIGDGSTFLEENKELQQIKEVSEISTESDQFGDDVYKIEDDCVGSISDMKEILNSQKKGQDSDVQILWETEKKNDGDTLARASDIHKIEKNGNGSKDQREKVERVRVKDNAFVGRSVNIDLVDDTALFDVVPFYKKGKDHSKRPVTAHTDKDAPRKHKKVGVEKPIDKGNASSIVERNASTKVSDFRNSGEMNGKQLRIMYSRNQMESMRYAHIANQKKLWSDLYARLLPELVTEYEGPISAVPRRTQDYVVKEEKTEDNDDYNSILRPAFAVDGEPDFDSGPPEDGIEYLRRVRWEAKRIPNVKVAKVSGSKYREKEQSVYMPQIPRAPATGEGMGGLVAFRLLTHSSGIPFFQLAYLSVFLLTDKDTRNGLSDTGIKAEKADMFGEKESGLESSDCKWVVALCASVDTPPDADTSACLRALVRKCASLRALEVGVLEMNKLSLWQICSSPSQADILAKWNERRSVFTTV", "length": 653, "header": "tr|F4IN39-1|F4IN39_ARATH Isoform 1 of Survival motor neuron interacting protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IN39-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B1V8-1", "url": "https://www.uniprot.org/uniprotkb/F4IN39/entry#A0A1P8B1V8-1", "sequence": { "sequence": 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"A0A1P8B1W4-1", "url": "https://www.uniprot.org/uniprotkb/F4IN39/entry#A0A1P8B1W4-1", "sequence": { "sequence": "MATRFDTGESIGSGKTSISRDEFAEDSLKIVSLPPVENDDSVEEMISPKKQVKSSPFTSVFEKDGEIIHSDSIDISFSETTLEETVAMNVECPGVVVVSVPENGSTILEENKVGEEIKESSEISTTEGDRLGDDVLKIKDVVETDGFVVSISDMKESLNSEKKGQDSDGQRIVEAEKIILFAEIGDGSTFLEENKELQQIKEVSEISTESDQFGDDVYKIEDDCVGSISDMKEILNSQKKGQDSDVQILWETEKKNDGDTLARASDIHKIEKNGNGSKDQREKVERVRVKDNAFVGRSVNIDLVDDTALFDVVPFYKKGKDHSKRPVTAHTDKDAPRKHKKVGVEKPIDKGNASSIVERNASTKVSDFRNSGEMNGKQLRIMYSRNQMESMRYAHIANQKKLWSDLYARLLPELVTEYEGLKNHKSILGPISAVPRRTRLFVH", "length": 443, "header": "tr|A0A1P8B1W4-1|F4IN39_ARATH Computationally mapped isoform of Survival motor neuron interacting protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IN39-1" }, "locus": { "chromosome": "2", "start_pos": 17701659, "end_pos": 17703684, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G42510.6", "url": "https://www.ensemblgenomes.org/id/AT2G42510.6" }, { "database": "Ensembl Peptide", "id": "AT2G42510.6", "url": "https://www.ensemblgenomes.org/id/AT2G42510.6" } ] } }, { "isoform_ac": "A0A1P8B1W9-1", "url": "https://www.uniprot.org/uniprotkb/F4IN39/entry#A0A1P8B1W9-1", "sequence": { "sequence": "MNVECPGVVVVSVPENGSTILEENKVGEEIKESSEISTTEGDRLGDDVLKIKDVVETDGFVVSISDMKESLNSEKKGQDSDGQRIVEAEKIILFAEIGDGSTFLEENKELQQIKEVSEISTESDQFGDDVYKIEDDCVGSISDMKEILNSQKKGQDSDVQILWETEKKNDGDTLARASDIHKIEKNGNGSKDQREKVERVRVKDNAFVGRSVNIDLVDDTALFDVVPFYKKGKDHSKRPVTAHTDKDAPRKHKKVGVEKPIDKGNASSIVERNASTKVSDFRNSGEMNGKQLRIMYSRNQMESMRYAHIANQKKLWSDLYARLLPELVTEYEGLKNHKSILGPISAVPRRTRLFVH", "length": 356, "header": "tr|A0A1P8B1W9-1|F4IN39_ARATH Computationally mapped isoform of Survival motor neuron interacting protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IN39-1" }, "locus": { "chromosome": "2", "start_pos": 17701381, "end_pos": 17703584, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G42510.4", "url": "https://www.ensemblgenomes.org/id/AT2G42510.4" }, { "database": "Ensembl Peptide", "id": "AT2G42510.4", "url": "https://www.ensemblgenomes.org/id/AT2G42510.4" } ] } }, { "isoform_ac": "F4IN39-1", "url": "https://www.uniprot.org/uniprotkb/F4IN39/entry#F4IN39-1", "sequence": { "sequence": "MATRFDTGESIGSGKTSISRDEFAEDSLKIVSLPPVENDDSVEEMISPKKQVKSSPFTSVFEKDGEIIHSDSIDISFSETTLEETVAMNVECPGVVVVSVPENGSTILEENKVGEEIKESSEISTTEGDRLGDDVLKIKDVVETDGFVVSISDMKESLNSEKKGQDSDGQRIVEAEKIILFAEIGDGSTFLEENKELQQIKEVSEISTESDQFGDDVYKIEDDCVGSISDMKEILNSQKKGQDSDVQILWETEKKNDGDTLARASDIHKIEKNGNGSKDQREKVERVRVKDNAFVGRSVNIDLVDDTALFDVVPFYKKGKDHSKRPVTAHTDKDAPRKHKKVGVEKPIDKGNASSIVERNASTKVSDFRNSGEMNGKQLRIMYSRNQMESMRYAHIANQKKLWSDLYARLLPELVTEYEGPISAVPRRTQDYVVKEEKTEDNDDYNSILRPAFAVDGEPDFDSGPPEDGIEYLRRVRWEAKRIPNVKVAKVSGSKYREKEQSVYMPQIPRAPATGEGMGGLVAFRLLTHSSGIPFFQLAYLSVFLLTDKDTRNGLSDTGIKAEKADMFGEKESGLESSDCKWVVALCASVDTPPDADTSACLRALVRKCASLRALEVGVLEMNKLSLWQICSSPSQADILAKWNERRSVFTTV", "length": 653, "header": "tr|F4IN39-1|F4IN39_ARATH Isoform 1 of Survival motor neuron interacting protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IN39-1" }, "locus": { "chromosome": "2", "start_pos": 17701662, "end_pos": 17704618, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G42510.2", "url": "https://www.ensemblgenomes.org/id/AT2G42510.2" }, { "database": "Ensembl Peptide", "id": "AT2G42510.2", "url": "https://www.ensemblgenomes.org/id/AT2G42510.2" } ] } }, { "isoform_ac": "F4IN40-1", "url": "https://www.uniprot.org/uniprotkb/F4IN39/entry#F4IN40-1", "sequence": { "sequence": "MATRFDTGESIGSGKTSISRDEFAEDSLKIVSLPPVENDDSVEEMISPKKQVKSSPFTSVFEKDGEIIHSDSIDISFSETTLEETVAMNVECPGVVVVSVPENGSTILEENKVGEEIKESSEISTTEGDRLGDDVLKIKDVVETDGFVVSISDMKESLNSEKKGQDSDGQRIVEAEKIILFAEIGDGSTFLEENKELQQIKEVSEISTESDQFGDDVYKIEDDCVGSISDMKEILNSQKKGQDSDVQILWETEKKNDGDTLARASDIHKIEKNGNGSKDQREKVERVRVKDNAFVGRSVNIDLVDDTALFDVVPFYKKGKDHSKRPVTAHTDKDAPRKHKKVGVEKPIDKGNASSIVERNASTKVSDFRNSGEMNGKQLRIMYSRNQMESMRLLPELVTEYEGLKNHKSILEDYVVKEEKTEDNDDYNSILRPAFAVDGEPDFDSGPPEDGIEYLRRVRWEAKRIPNVKVAKVSGSKYREKEQSVYMPQIPRAPATGEGMGGLVAFRLLTHSSGFKTKWQRVFRRCTHGDIQ", "length": 532, "header": "tr|F4IN40-1|F4IN40_ARATH Computationally mapped isoform of Survival motor neuron interacting protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IN39-1" }, "locus": { "chromosome": "2", "start_pos": 17701662, "end_pos": 17704618, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G42510.1", "url": "https://www.ensemblgenomes.org/id/AT2G42510.1" }, { "database": "Ensembl Peptide", "id": "AT2G42510.1", "url": "https://www.ensemblgenomes.org/id/AT2G42510.1" } ] } }, { "isoform_ac": "F4IN41-1", "url": "https://www.uniprot.org/uniprotkb/F4IN39/entry#F4IN41-1", "sequence": { "sequence": "MATRFDTGESIGSGKTSISRDEFAEDSLKIVSLPPVENDDSVEEMISPKKQVKSSPFTSVFEKDGEIIHSDSIDISFSETTLEETVAMNVECPGVVVVSVPENGSTILEENKVGEEIKESSEISTTEGDRLGDDVLKIKDVVETDGFVVSISDMKESLNSEKKGQDSDGQRIVEAEKIILFAEIGDGSTFLEENKELQQIKEVSEISTESDQFGDDVYKIEDDCVGSISDMKEILNSQKKGQDSDVQILWETEKKNDGDTLARASDIHKIEKNGNGSKDQREKVERVRVKDNAFVGRSVNIDLVDDTALFDVVPFYKKGKDHSKRPVTAHTDKDAPRKHKKVGVEKPIDKGNASSIVERNASTKVSDFRNSGEMNGKQLRIILLPELVTEYEGLKNHKSILGKELMT", "length": 407, "header": "tr|F4IN41-1|F4IN41_ARATH Computationally mapped isoform of Survival motor neuron interacting protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4IN39-1" }, "locus": { "chromosome": "2", "start_pos": 17701662, "end_pos": 17704612, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G42510.3", "url": "https://www.ensemblgenomes.org/id/AT2G42510.3" }, { "database": "Ensembl Peptide", "id": "AT2G42510.3", "url": "https://www.ensemblgenomes.org/id/AT2G42510.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1V8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V8" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B1V8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B1V8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G42510", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G42510", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IN39", "url": "https://www.uniprot.org/uniprotkb/F4IN39" } ], "pmid": "" }, { "name": "SMN complex", "id": "GO:0032797", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032797", "evidence": [ { "database": "UniProtKB", "id": "F4IN39", "url": "https://www.uniprot.org/uniprotkb/F4IN39" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spliceosomal snRNP assembly", "id": "GO:0000387", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000387", "evidence": [ { "database": "UniProtKB", "id": "F4IN39", "url": "https://www.uniprot.org/uniprotkb/F4IN39" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IN39-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 653, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IN39-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IN39" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 275, "end_pos": 277 }, { "start_pos": 352, "end_pos": 354 }, { "start_pos": 360, "end_pos": 362 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IVD6-1", "uniprot_ac": "F4IVD6", "uniprot_id": "F4IVD6_ARATH", "mass": { "chemical_mass": 49362.0, "monoisotopic_mass": 49362.0 }, "refseq": { "ac": "NP_179634", "name": "Ypt/Rab-GAP domain of gyp1p superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179634" }, "gene_names": [ { "name": "T13C7.3", "type": "synonym", "evidence": [ { "id": "NP_179634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179634" }, { "id": "F4IVD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVD6" } ] }, { "name": "T13C7_3", "type": "synonym", "evidence": [ { "id": "NP_179634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179634" }, { "id": "F4IVD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVD6" } ] } ], "protein_names": [ { "name": "Ypt/Rab-GAP domain of gyp1p superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_179634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179634" }, { "id": "F4IVD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVD6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IVD6", "url": "https://www.uniprot.org/uniprotkb/F4IVD6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IVD6", "locus": {} } ], "crossref": [ { "id": "AT2G20440", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G20440", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "816563", "url": "https://www.ncbi.nlm.nih.gov/gene/816563", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G20440", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G20440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KYITMAV", "url": "https://omabrowser.org/oma/group/KYITMAV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957:SF582", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957:SF582", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_179634", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179634", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G20440", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G20440", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B233", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B233", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B233-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B233-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IVD6", "url": "https://www.uniprot.org/uniprotkb/F4IVD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IVD6-1", "url": "https://www.uniprot.org/uniprotkb/F4IVD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFCCGFMWKSGGEDLQGFYPVRPECQPDVPRTRFKSRAGKTLSARRWHAAFTEDGHLDMEKVLRRIQRGGIHPSIKGAVWEFLLGCYDPDSTFEERNILRNRRREQYGAWKEECKKMVPVIGSGKYVTMAVVQENGNPIDESSVENQGWIVKNTVTDERVLQWMLSLHQIGLDVARTDRYLCFYENDRNQSKLWDVLAIYTWLNLDIGYVQGMNDICSPMIILFDDEGDAFWCFERAMRRLRENFRATATSMGVQTQLGVLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLFRREFSFLDALYLWELMWAMEYNPTMFATYEELENRNNAASDPKLLKRYGKFERKYINSGQNEQHRNTLAVFVVASVLQTKNKRLLKEAKGLDDVVQILGDIAGNLDAKKACKEALKIHEKFLKKANSNKQ", "length": 425, "header": "tr|F4IVD6-1|F4IVD6_ARATH Isoform 1 of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IVD6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B233-1", "url": "https://www.uniprot.org/uniprotkb/F4IVD6/entry#A0A1P8B233-1", "sequence": { "sequence": "MFCCGFMWKSGGEDLQGFYPVRPECQPDVPRTRFKSRAGKTLSARRWHAAFTEDGHLDMEKVLRRIQRGGIHPSIKGAVWEFLLGCYDPDSTFEERNILRNRRREQYGAWKEECKKMVPVIGSGKYVTMAVVQENGNPIDESSVENQGWIVKNTVTDERVLQWMLSLHQIGLDVARTDRYLCFYENDRNQSKLWDVLAIYTWLNLDIGYVQGMNDICSPMIILFDDEGDAFWCFERAMRRLRENFRATATSMGVQTQLGVLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLFRREFSFLDALYLWEVMTNFLHFFSWFLVLLAVIVYEAVRSCCVFIIFFFFALSAVWVMRIM", "length": 356, "header": "tr|A0A1P8B233-1|F4IVD6_ARATH Computationally mapped isoform of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IVD6-1" }, "locus": { "chromosome": "2", "start_pos": 8810647, "end_pos": 8813693, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20440.3", "url": "https://www.ensemblgenomes.org/id/AT2G20440.3" }, { "database": "Ensembl Peptide", "id": "AT2G20440.3", "url": "https://www.ensemblgenomes.org/id/AT2G20440.3" } ] } }, { "isoform_ac": "F4IVD6-1", "url": "https://www.uniprot.org/uniprotkb/F4IVD6/entry#F4IVD6-1", 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"phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B233", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B233" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B233", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B233" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G20440", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G20440", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F4IVD6", "url": "https://www.uniprot.org/uniprotkb/F4IVD6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IVD6", "url": "https://www.uniprot.org/uniprotkb/F4IVD6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IVD6", "url": "https://www.uniprot.org/uniprotkb/F4IVD6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IVD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVD6" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", 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"ath:AT2G20210", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G20210", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MDKRFAC", "url": "https://omabrowser.org/oma/group/MDKRFAC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B258", "url": "https://www.orthodb.org/?gene=A0A1P8B258", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IUG1", "url": "https://www.orthodb.org/?gene=F4IUG1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47818", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47818", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47818:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47818:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_179611", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179611", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G20210", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G20210", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B258", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B258", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B258-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B258-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IUG1", "url": "https://www.uniprot.org/uniprotkb/F4IUG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IUG1-1", "url": "https://www.uniprot.org/uniprotkb/F4IUG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCLDSYESGDDCCLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNCVDEAAEVALRPTFSGRICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTFGPYLRCLRLLNVLCVTETSELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLELIHCKLSLSSISAICTSLHEKGIHTTGMQRFCIKTSSIEIDPLAAPSAFVSFLMSVRTLHSLHFGDSNLDRYFARMVFSTLLDSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQSLCKLNLRGNELDRYDAENLAHALLHMPGLESLDLSGNPIEDSGIRSLISYFTKNPDSRLADLNLENCELSCCGVIEFLDTLSMLEKPLKFLSVADNALGSEVAEAVVNSFTISIESLNIMGIGLGPLGFLALGRKLEKVSKKLLSINISKNRGGLETARFLSKLIPLAPKLISIDASYNLMPPEALLMLCDSLRTAKGDLKRLDMTGNSCISHEADHSSLLHEFQHNGEPIFVLPSSSVSHVPYDDDP", "length": 604, "header": "tr|F4IUG1-1|F4IUG1_ARATH Isoform 1 of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUG1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B258-1", "url": "https://www.uniprot.org/uniprotkb/F4IUG1/entry#A0A1P8B258-1", "sequence": { "sequence": "MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCLDSYESGDDCCLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNCVDEAAEVALRPTFSGRICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTFGPYLRCLRLLNVLCVTETSELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLELIHCKLSLSSISAICTSLHEKGIHTTGMQRFCIKTSSIEIDPLAAPSAFVSFLMSVRTLHSLHFGDSNLDRYFARMVFSTLLDSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQSLCKLNLRGNELDRYDAENLAHALLHMPGLESLDLSGNPIEDSGIRSLISYFTKNPDSRLADLNLENCELSCCGVIEFLDTLSMLEKPLKFLSVADNALGRGCSKLFHNLHRVAQYYGYRTRSSRVSCIRQKT", "length": 488, "header": "tr|A0A1P8B258-1|F4IUG1_ARATH Computationally mapped isoform of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUG1-1" }, "locus": { "chromosome": "2", "start_pos": 8721382, "end_pos": 8725127, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20210.2", "url": "https://www.ensemblgenomes.org/id/AT2G20210.2" }, { "database": "Ensembl Peptide", "id": "AT2G20210.2", "url": "https://www.ensemblgenomes.org/id/AT2G20210.2" } ] } }, { "isoform_ac": "F4IUG1-1", "url": "https://www.uniprot.org/uniprotkb/F4IUG1/entry#F4IUG1-1", "sequence": { "sequence": "MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCLDSYESGDDCCLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNCVDEAAEVALRPTFSGRICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTFGPYLRCLRLLNVLCVTETSELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLELIHCKLSLSSISAICTSLHEKGIHTTGMQRFCIKTSSIEIDPLAAPSAFVSFLMSVRTLHSLHFGDSNLDRYFARMVFSTLLDSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQSLCKLNLRGNELDRYDAENLAHALLHMPGLESLDLSGNPIEDSGIRSLISYFTKNPDSRLADLNLENCELSCCGVIEFLDTLSMLEKPLKFLSVADNALGSEVAEAVVNSFTISIESLNIMGIGLGPLGFLALGRKLEKVSKKLLSINISKNRGGLETARFLSKLIPLAPKLISIDASYNLMPPEALLMLCDSLRTAKGDLKRLDMTGNSCISHEADHSSLLHEFQHNGEPIFVLPSSSVSHVPYDDDP", "length": 604, "header": "tr|F4IUG1-1|F4IUG1_ARATH Isoform 1 of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUG1-1" }, "locus": { "chromosome": "2", "start_pos": 8721325, "end_pos": 8725127, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20210.1", "url": "https://www.ensemblgenomes.org/id/AT2G20210.1" }, { "database": "Ensembl Peptide", "id": "AT2G20210.1", "url": "https://www.ensemblgenomes.org/id/AT2G20210.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B258", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B258" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B258", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B258" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G20210", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G20210", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G32340", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B290", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B290", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B290-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B290-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ITP5", "url": "https://www.uniprot.org/uniprotkb/F4ITP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ITP5-1", "url": "https://www.uniprot.org/uniprotkb/F4ITP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELKPEVQYGDFSLTNSLVNVDKEDLRREEADSDAGSVIICDHSICDSGDGDICAVADYVECVAVETTEKLELPEEFAKSVMVLTCESTAEGGSCDVYLVGTAHVSQESCREVEAVISALKPQAVFLELCSSRLSILTPQTVKEPPTWMEMIYMWKKKHNLFEIVYGYILAKAAKKLEVFPGAEFRVGFEEANKYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKELEKMLKDLGDGDMLTLAIQEMSTEFPTLMETLVHERDKYMAYQLLRIASEHSSVVAVVGRGHLQGIKKNWNQTINIKELMELPTNESIFTVKNILKYMVVVVVGTAIVSGMYLAK", "length": 356, "header": "tr|F4ITP5-1|F4ITP5_ARATH Isoform 1 of TraB family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4ITP5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B290-1", "url": "https://www.uniprot.org/uniprotkb/F4ITP5/entry#A0A1P8B290-1", "sequence": { "sequence": "MELKPEVQYGDFSLTNSLVNVDKEDLRREEADSDAGSVIICDHSICDSGDGDICAVADYVECVAVETTEKLELPEEFAKSVMVLTCESTAEGGSCDVYLVGTAHVSQESCREVEAVISALKPQAVFLELCSSRLSILTPQTVKEPPTWMEMIYMWKKKHNLFEIVYGYILAKAAKKLEVFPGAEFRVGFEEANKYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKELEKMLKDLGDGDMLTLAIQEMSTEFPTLMETLVHERDKLVYYPL", "length": 285, "header": "tr|A0A1P8B290-1|F4ITP5_ARATH Computationally mapped isoform of TraB family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ITP5-1" }, "locus": { "chromosome": "2", "start_pos": 13732078, "end_pos": 13733884, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G32340.2", "url": "https://www.ensemblgenomes.org/id/AT2G32340.2" }, { "database": "Ensembl Peptide", "id": "AT2G32340.2", "url": "https://www.ensemblgenomes.org/id/AT2G32340.2" } ] } }, { "isoform_ac": "F4ITP5-1", "url": "https://www.uniprot.org/uniprotkb/F4ITP5/entry#F4ITP5-1", "sequence": { "sequence": "MELKPEVQYGDFSLTNSLVNVDKEDLRREEADSDAGSVIICDHSICDSGDGDICAVADYVECVAVETTEKLELPEEFAKSVMVLTCESTAEGGSCDVYLVGTAHVSQESCREVEAVISALKPQAVFLELCSSRLSILTPQTVKEPPTWMEMIYMWKKKHNLFEIVYGYILAKAAKKLEVFPGAEFRVGFEEANKYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKELEKMLKDLGDGDMLTLAIQEMSTEFPTLMETLVHERDKYMAYQLLRIASEHSSVVAVVGRGHLQGIKKNWNQTINIKELMELPTNESIFTVKNILKYMVVVVVGTAIVSGMYLAK", "length": 356, "header": "tr|F4ITP5-1|F4ITP5_ARATH Isoform 1 of TraB family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4ITP5-1" }, "locus": { "chromosome": "2", "start_pos": 13731969, "end_pos": 13734534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G32340.1", "url": "https://www.ensemblgenomes.org/id/AT2G32340.1" }, { "database": "Ensembl Peptide", "id": "AT2G32340.1", "url": "https://www.ensemblgenomes.org/id/AT2G32340.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B290", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B290" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B290", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B290" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G32340", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G32340", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZML4-1", "protein_name": "TraB domain containing", "gene_name": "Trabd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGEEKPAQEADVEPMVTSGASEAVPRVLSGDPQNISDVDAFNLLLEMKLKRRRERPNLPCTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEVSLEKLQQAVKQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPPSITGRVSRAAVKAAFFGLLGYSLYWMGRRTVNLVLSLPAAQFCLQRVSEARPGR", "length": 376 }, "evidence": [ { "id": "F4ITP5", "url": "https://omabrowser.org/oma/group/F4ITP5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3I2V0-1", "protein_name": "TraB domain-containing protein", "gene_name": "Trabd", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGEEKPTQETDMEPVVTSGASETVPRVPSGDPQNISDVDAFNLLLEMKLKRRRERPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEVSLEKLQQAVKQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPPSISGRVSRVAVKAAFFGLLGYSLYWMGRRTMNLVLSLPAAQFCLQRVSEARPGR", "length": 376 }, "evidence": [ { "id": "F4ITP5", "url": "https://omabrowser.org/oma/group/F4ITP5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q58DF3-1", "protein_name": "TraB domain-containing protein", "gene_name": "TRABD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEPEEQPPHEADTEPVVTSGASEAVPRVLPGDPQNLSDVDAFNLLLEMKLKRRRERPNLPHTVTELVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEISLEKLQQAIRQNGVASGLMQMLLLKVSAHITEQLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPVTFKRAIAALSLWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMVGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWTTDLNIQEIMTVPPPSASGRVSRLAVKAAALGLLGYGLYWTGRRAVSLLLALPAARHCLQRLSDAWPQK", "length": 377 }, "evidence": [ { "id": "F4ITP5", "url": "https://omabrowser.org/oma/group/F4ITP5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99JY4-1", "protein_name": "TraB domain-containing protein", "gene_name": "Trabd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGEEKPAQEADVEPVVTAGTSEAVPRVLAGDPQNISDVDAFNLLLEMKLKRRRERPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEVSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPPSISGRVSRVAVKAAFFGLLGYSLYWMGRRTLNLVLSLPAAQFCLQRVSEARPGR", "length": 376 }, "evidence": [ { "id": "F4ITP5", "url": "https://omabrowser.org/oma/group/F4ITP5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H4I3-1", "protein_name": "TraB domain-containing protein", "gene_name": "TRABD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDGEEQQPPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSLPAAQYCLQRVTEARHK", "length": 376 }, "evidence": [ { "id": "F4ITP5", "url": "https://omabrowser.org/oma/group/F4ITP5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "F4ITP5", "url": "https://www.uniprot.org/uniprotkb/F4ITP5" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F4ITP5", "url": "https://www.uniprot.org/uniprotkb/F4ITP5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F4ITP5", "url": "https://www.uniprot.org/uniprotkb/F4ITP5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitophagy", "id": "GO:0000423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000423", "evidence": [ { "database": "UniProtKB", "id": "F4ITP5", "url": "https://www.uniprot.org/uniprotkb/F4ITP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 326, "end_pos": 328, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4ITP5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 356, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4ITP5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4ITP5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 312, "end_pos": 314 }, { "start_pos": 326, "end_pos": 328 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IQ31-1", "uniprot_ac": "F4IQ31", "uniprot_id": "F4IQ31_ARATH", "mass": { "chemical_mass": 18861.0, "monoisotopic_mass": 18861.0 }, "refseq": { "ac": "NP_001325188", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325188" }, "gene_names": [ { "name": "ABCI16", "type": "recommended", "evidence": [ { "id": "F4IQ31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IQ31" } ] }, { "name": "ABCI16", "type": "synonym", "evidence": [ { "id": "NP_001325188", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325188" } ] }, { "name": "ATP-binding cassette I16", "type": "synonym", "evidence": [ { "id": "NP_001325188", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325188" }, { "id": "F4IQ31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IQ31" } ] }, { "name": "F3G5.9", "type": "synonym", "evidence": [ { "id": "NP_001325188", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325188" }, { "id": "F4IQ31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IQ31" } ] }, { "name": "F3G5_9", "type": "synonym", "evidence": [ { "id": "NP_001325188", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325188" }, { "id": "F4IQ31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IQ31" } ] } ], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "F4IQ31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IQ31/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001325188", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325188" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IQ31", "url": "https://www.uniprot.org/uniprotkb/F4IQ31" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ABCI16", "url": "https://www.uniprot.org/uniprotkb/F4IQ31", "locus": { "chromosome": "CP002685.1", "start_pos": 15662224, "end_pos": 15664599, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT2G37300", "url": "https://www.ensemblgenomes.org/id/AT2G37300" } ] } } ], "crossref": [ { "id": "AT2G37300", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G37300", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "818307", "url": "https://www.ncbi.nlm.nih.gov/gene/818307", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT2G37300", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G37300", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR33701", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33701", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33701:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33701:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001325188", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325188", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G37300", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G37300", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B2E8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B2E8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B2E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B2E8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ30", "url": "https://www.uniprot.org/uniprotkb/F4IQ30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ30-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ31", "url": "https://www.uniprot.org/uniprotkb/F4IQ31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ31-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEEEEKEEGQRTVECLRGRLLAERQVSRSAKEEAELITRKMEELERNLKEEIRLREKAEKRLKLLMKKLEFIKGSRSSEGSSSSEVSCISSVCTSASKEEEEETHDSGAVDEGKTDHATENVASTEEADSSSKLKDVSSGEASVVASTSSHKEESQFGNEFSWYSDAT", "length": 169, "header": "tr|F4IQ31-1|F4IQ31_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=ABCI16 PE=1 SV=1 CANONICAL=F4IQ31-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B2E8-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ31/entry#A0A1P8B2E8-1", "sequence": { "sequence": "MSMTIDPSNYNTKCRTNFASKKMEEEEEKEEGQRTVECLRGRLLAERQVSRSAKEEAELITRKMEELERNLKEEIRLREKAEKRLKLLMKKLEFIKGSRSSEGSSSSEVSCISSVCTSASKEEEEETHDSGAVDEGKTDHATENVASTEEADSSSKLKDVSSGEASVVASTSSHKEESQFGNEFSWYSDAT", "length": 191, "header": "tr|A0A1P8B2E8-1|F4IQ31_ARATH Computationally mapped isoform of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=ABCI16 PE=1 SV=1 CANONICAL=F4IQ31-1" }, "locus": { "chromosome": "2", "start_pos": 15662399, "end_pos": 15664041, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G37300.5", "url": "https://www.ensemblgenomes.org/id/AT2G37300.5" }, { "database": "Ensembl Peptide", "id": "AT2G37300.5", "url": "https://www.ensemblgenomes.org/id/AT2G37300.5" } ] } }, { "isoform_ac": "F4IQ30-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ31/entry#F4IQ30-1", "sequence": { "sequence": "MVIRSMEGHKIFLISLILFIYKHILLIISHSPIVQCRTTQEAEQINNFGWLNERKNSMSMTIDPSNYNTKCRTNFASKKMEEEEEKEEGQRTVECLRGRLLAERQVSRSAKEEAELITRKMEELERNLKEEIRLREKAEKRLKLLMKKLEFIKGSRSSEGSSSSEVSCISSVCTSASKEEEEETHDSGAVDEGKTDHATENVASTEEADSSSKLKDVSSGEASVVASTSSHKEESQFGNEFSWYSDAT", "length": 248, "header": "tr|F4IQ30-1|F4IQ30_ARATH Computationally mapped isoform of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=ABCI16 PE=1 SV=1 CANONICAL=F4IQ31-1" }, "locus": { "chromosome": "2", "start_pos": 15662567, "end_pos": 15664599, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G37300.2", "url": "https://www.ensemblgenomes.org/id/AT2G37300.2" }, { "database": "Ensembl Peptide", "id": "AT2G37300.2", "url": "https://www.ensemblgenomes.org/id/AT2G37300.2" } ] } }, { "isoform_ac": "F4IQ31-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ31/entry#F4IQ31-1", "sequence": { "sequence": "MEEEEEKEEGQRTVECLRGRLLAERQVSRSAKEEAELITRKMEELERNLKEEIRLREKAEKRLKLLMKKLEFIKGSRSSEGSSSSEVSCISSVCTSASKEEEEETHDSGAVDEGKTDHATENVASTEEADSSSKLKDVSSGEASVVASTSSHKEESQFGNEFSWYSDAT", "length": 169, "header": "tr|F4IQ31-1|F4IQ31_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN=ABCI16 PE=1 SV=1 CANONICAL=F4IQ31-1" }, "locus": { "chromosome": "2", "start_pos": 15662224, "end_pos": 15664012, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G37300.1", "url": "https://www.ensemblgenomes.org/id/AT2G37300.1" }, { "database": "Ensembl Peptide", "id": "AT2G37300.1", "url": "https://www.ensemblgenomes.org/id/AT2G37300.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 151, "end_pos": 151, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B2E8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B2E8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser151" }, { "start_pos": 166, "end_pos": 166, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B2E8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B2E8" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser166" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B2E8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B2E8" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B2E8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B2E8" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B2E8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B2E8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G37300", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G37300", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IQ31", "url": "https://www.uniprot.org/uniprotkb/F4IQ31" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IQ31", "url": "https://www.uniprot.org/uniprotkb/F4IQ31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 151, 166 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IQ97-1", "uniprot_ac": "F4IQ97", "uniprot_id": "F4IQ97_ARATH", "mass": { "chemical_mass": 46650.0, "monoisotopic_mass": 46650.0 }, "refseq": { "ac": "NP_001118253", "name": "Nucleotide-diphospho-sugar transferase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118253" }, "gene_names": [], "protein_names": [ { "name": "Nucleotide-diphospho-sugar transferase family protein", "type": "synonym", "evidence": [ { "id": "NP_001118253", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118253" }, { "id": "F4IQ97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IQ97/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IQ97", "url": "https://www.uniprot.org/uniprotkb/F4IQ97" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IQ97", "locus": {} } ], "crossref": [ { "id": "F4IQ97", "url": "https://alphafold.ebi.ac.uk/entry/F4IQ97", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G02061", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G02061", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "6240321", "url": "https://www.ncbi.nlm.nih.gov/gene/6240321", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G02061", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G02061", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QVAWDRR", "url": "https://omabrowser.org/oma/group/QVAWDRR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46038", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46038", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46038:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46038:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03407", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03407", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001118253", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118253", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G02061", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G02061", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B2W0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B2W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B2W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B2W0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ97", "url": "https://www.uniprot.org/uniprotkb/F4IQ97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ97-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNLSNRFGSNSKTAILNDSYSDENHSSSAAAAVTSVVIPPCSGNVLRAVLLLFFICFCFSLYRTSGYLRIVSDSSSTLSRIFPSVNDSSSSPSPSPSLSPEEIEEPKLEEVLRRAATKDGTVILTTLNEAWAAPGSVIDLFFESFRIGKGTRRLLKHLVIIALDAKAYSRCQELHKHCFRLETEGVDFSGGEAYFMTPSYLTMMWRRISFLRSVLEKGYNFVFTDADVMWFRNPFRRFYEDGDFQIACDHYIGRPNDFRNRPNGGFTFVRANNRSIGFYKFWYDSRTKYPKNHDQDVLNFIKTDPFLWKLRIRIRFLNTVYFGGFCEPSKDLNLVCTMHANCCFGLDSKLHDLRIMLQDWRDFKSLPLHSNQSSGFTWSVPQNCSLDSLRPVDSKDEEESEPPGESTQ", "length": 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"AT2G30630.2", "url": "https://www.ensemblgenomes.org/id/AT2G30630.2" }, { "database": "Ensembl Peptide", "id": "AT2G30630.2", "url": "https://www.ensemblgenomes.org/id/AT2G30630.2" } ] } }, { "isoform_ac": "O04333-1", "url": "https://www.uniprot.org/uniprotkb/F4INW4/entry#O04333-1", "sequence": { "sequence": "MSLDDPQSKSRSMCVPEFNSNNNTTTFAQILVISSIGLLLALALHFRLRKLRHSKNIPRLRSSQKHKGHEKLERFSHYVVRQMGFKDRRECPHLCKLANEYIRKSGSCEEDIYSFFSEEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQILSADVEPKKKLKHIVMAATREQRFERVTKNLKVARVFNTLVEEMKAMGIASVDDSECTEVMAPVAHKDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGADAVVIEADAFKESDVIYRALSARGHVDMIKTAEFVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHRYRMGAGYKVGENGDVIENYWERIGERQQLQEDGRERKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVRSQLRSHKRFANAFLTYCNLVDNARLYCTNALEGSPKLIGWKEKEKTLLVDPEEIDCLKNVGRLNENADSIYELYRNPNPACEAGSIWKDIVLSPSRFNIQQELKYSIQKVERFKQYLQETPR", "length": 531, "header": "tr|O04333-1|F4INW4_ARATH Computationally mapped isoform of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4INW4-1" }, "locus": { "chromosome": "2", "start_pos": 13046672, "end_pos": 13049219, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30630.1", "url": "https://www.ensemblgenomes.org/id/AT2G30630.1" }, { "database": "Ensembl Peptide", "id": "AT2G30630.1", "url": "https://www.ensemblgenomes.org/id/AT2G30630.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 262, "end_pos": 262, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O04333", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O04333" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr262" }, { "start_pos": 550, "end_pos": 550, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O04333", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O04333" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ], "site_lbl": "Thr550" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B335", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B335" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B335", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B335" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G30630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G30630", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F4INW4", "url": 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"MVERFFPTKRSSGDENHRRGNLSLLSGPISSGKTSLLFQLALNVASASTTTRVVFICHRKKIESNPPFLSQGIDPSSDVFNRIQIKYVDDDEGIRKYFAAFHLHHVDDLPSAVIIDDFGDYFSKLNSVMNSRARDMAMVRTLALCHNAIVDANRKALCELVLSETNHGDSPRSLFIYKRWIPKIFTIKGHGDGSFLLTSNDTSERSAKYSIALQYLILEQIIDDS", "length": 225, "header": "tr|F4J2X9-1|F4J2X9_ARATH Isoform 1 of tRNA dimethylallyltransferase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J2X9-1" }, "isoforms": [ { "isoform_ac": "A8MR60-1", "url": "https://www.uniprot.org/uniprotkb/F4J2X9/entry#A8MR60-1", "sequence": { "sequence": "MVERFFPTKRSSGDENHRRGNLSLLSGPISSGKTSLLFQLALNVASASTTTRVVFICHRKKIESNPPFLSQGIDPSSDVFNRIQIKYVDDDEGIRKYFAAFHLHHVDDLPSAVIIDDFGDYFSKLNSVMNSRARDMAMVRTLALCHNAIVDAKKALCELVLSETNHGDSPRSLFIYKRWIPKIFTIKGHGDGSFLLTSNDTSERSAKYSIALQYLILEQIIDDS", "length": 224, "header": "tr|A8MR60-1|F4J2X9_ARATH Computationally mapped isoform of tRNA dimethylallyltransferase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J2X9-1" }, "locus": { "chromosome": "3", "start_pos": 8311781, "end_pos": 8313086, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G23255.1", "url": "https://www.ensemblgenomes.org/id/AT3G23255.1" }, { "database": "Ensembl Peptide", "id": "AT3G23255.1", "url": "https://www.ensemblgenomes.org/id/AT3G23255.1" } ] } }, { "isoform_ac": "F4J2X9-1", "url": "https://www.uniprot.org/uniprotkb/F4J2X9/entry#F4J2X9-1", "sequence": { "sequence": "MVERFFPTKRSSGDENHRRGNLSLLSGPISSGKTSLLFQLALNVASASTTTRVVFICHRKKIESNPPFLSQGIDPSSDVFNRIQIKYVDDDEGIRKYFAAFHLHHVDDLPSAVIIDDFGDYFSKLNSVMNSRARDMAMVRTLALCHNAIVDANRKALCELVLSETNHGDSPRSLFIYKRWIPKIFTIKGHGDGSFLLTSNDTSERSAKYSIALQYLILEQIIDDS", "length": 225, "header": "tr|F4J2X9-1|F4J2X9_ARATH Isoform 1 of tRNA dimethylallyltransferase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J2X9-1" }, "locus": { "chromosome": "3", "start_pos": 8311722, "end_pos": 8313125, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G23255.2", "url": "https://www.ensemblgenomes.org/id/AT3G23255.2" }, { "database": "Ensembl Peptide", "id": "AT3G23255.2", "url": "https://www.ensemblgenomes.org/id/AT3G23255.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 23, "end_pos": 23, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J2X9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J2X9" } ], "site_lbl": "Ser23" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A8MR60", "url": "https://www.uniprot.org/uniprotkb/A8MR60" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A8MR60", "url": "https://www.uniprot.org/uniprotkb/A8MR60" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G23255", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G23255", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J2X9", "url": "https://www.uniprot.org/uniprotkb/F4J2X9" } ], "pmid": "" }, { "name": "Shu complex", "id": "GO:0097196", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097196", "evidence": [ { "database": "UniProtKB", "id": "F4J2X9", "url": "https://www.uniprot.org/uniprotkb/F4J2X9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "F4J2X9", "url": "https://www.uniprot.org/uniprotkb/F4J2X9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded DNA binding", "id": "GO:0003697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003697", "evidence": [ { "database": "UniProtKB", "id": "F4J2X9", "url": "https://www.uniprot.org/uniprotkb/F4J2X9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J2X9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 225, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J2X9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J2X9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 23 ], "sequon_annotation_sites": [ { "start_pos": 200, "end_pos": 202 }, { "start_pos": 21, "end_pos": 23 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J0W8-1", "uniprot_ac": "F4J0W8", "uniprot_id": "F4J0W8_ARATH", "mass": { "chemical_mass": 105627.0, "monoisotopic_mass": 105627.0 }, "refseq": { "ac": "NP_191877", "name": "TIC-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191877" }, "gene_names": [ { "name": "TKL", "type": "recommended", "evidence": [ { "id": "F4J0W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0W8" } ] }, { "name": "ATTKL", "type": "synonym", "evidence": [ { "id": "NP_191877", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191877" }, { "id": "F4J0W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0W8" } ] }, { "name": "TIC-like", "type": "synonym", "evidence": [ { "id": "NP_191877", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191877" }, { "id": "F4J0W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0W8" } ] }, { "name": "TICKLE", "type": "synonym", "evidence": [ { "id": "NP_191877", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191877" }, { "id": "F4J0W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0W8" } ] }, { "name": "TKL", "type": "synonym", "evidence": [ { "id": "NP_191877", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191877" } ] } ], "protein_names": [ { "name": "TIC-like protein", "type": "synonym", "evidence": [ { "id": "NP_191877", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191877" }, { "id": "F4J0W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0W8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J0W8", "url": "https://www.uniprot.org/uniprotkb/F4J0W8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "TKL", "url": "https://www.uniprot.org/uniprotkb/F4J0W8", "locus": { "chromosome": "CP002686.1", "start_pos": 23336092, "end_pos": 23340340, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT3G63180", "url": "https://www.ensemblgenomes.org/id/AT3G63180" } ] } } ], "crossref": [ { "id": "F4J0W8", "url": "https://alphafold.ebi.ac.uk/entry/F4J0W8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G63180", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G63180", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "825493", "url": "https://www.ncbi.nlm.nih.gov/gene/825493", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039317", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039317", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G63180", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G63180", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MQPQNFS", "url": "https://omabrowser.org/oma/group/MQPQNFS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34798", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34798", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34798:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34798:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_191877", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191877", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G63180", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G63180", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A8MRY5", "url": "https://www.uniprot.org/uniprotkb/A8MRY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MRY5-1", "url": "https://www.uniprot.org/uniprotkb/A8MRY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J0W8", "url": "https://www.uniprot.org/uniprotkb/F4J0W8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J0W8-1", "url": "https://www.uniprot.org/uniprotkb/F4J0W8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKPREARRSTTNMAASNGVTKRRQRISENSREQMHQEVATVRDRPGKKERDPESFNRSKRRRSERFAPRNERDVEEDSSDESQGDDDYHQRKSFSSGRIPRHAASLMVADEMIGVPVPRKARSACLKRSHDCRTSSGSHSCEVVSPSSSTLSVKERKIVNGSKSRIPKPPKSSGTVEDDLEIEIAEVLSGLKKQPHSSKRGDDSENSQKSSEVKGIKQLPAGVEICGLFTCKARFDSANIDKSTNGAKTSLVVASDIVDEKEPRVSEGPQLENNKDESHCISKLDIHLMVPPTLPSSSGRVSLLPLVSDYCKRDSALKSKEKITVKNEMNPEEVKQKKVDKRYWLNLDIEGPNQETDRDSNLRLQNLDWSQPQQAKSAPHSSVLPLPVAVASWPSGVPPQGHVALIQTGKPVDESNGSSKLVQGAPISASQPRPKRCATHFFIARNIQLHQHFLKTNHLPTPNKGSVYLKGGDLRPTAGNPSLHGSSPILSLNSQPHVRNGDNISAPNVKASESGHFASTRQNKPQPPPASISVVPAPAFIYPANHHLQPVMVPSKSSRPTKSPHLAVGLASANFSHPSSSASEVSSPYLTVIPNNAYSFQLSSTIRGGTPSQAVPFYNGSFYSPQMFQQPPQPLQRQSQAQRESKASSCSSSSHRQPQVSVNSLSSQANVQQHRQMSQKFEVAGVNTDSRGSHTQKGGPFGQIMAAPVQPQNFSMSFASIASSAPPATLNFSSNGYHISTPPGVAHQKNHQSSEAKTGGGSCSSNAEDPKKNLQGKPQGMMNGHTLVFDNPSRTLNFVSGTWPPPAATAINGDPSVFTQHLTQRQQQSGRSKMMMTHSQADSVSATSSQWKNPATSSSLTSCTSLNLKQFQSQQQIRTHGQTQISFAAPTNPQPSQGKQGRSGGSSPSVTGSASHGKPANSKVSNSKALLLSPVPLSQEHTENPASGSTQKNSPVCGRTVPPIITSCPGHLSELKY", "length": 978, "header": "tr|F4J0W8-1|F4J0W8_ARATH Isoform 1 of TIC-like protein OS=Arabidopsis thaliana OX=3702 GN=TKL PE=1 SV=1 CANONICAL=F4J0W8-1" }, "isoforms": [ { "isoform_ac": "A8MRY5-1", "url": "https://www.uniprot.org/uniprotkb/F4J0W8/entry#A8MRY5-1", "sequence": { "sequence": "MDKPREARRSTTNMAASNGVTKRRQRISENSREQMHQEVATVRDRPGKKERDPESFNRSKRRRSERFAPRNERDVEEDSSDESQGDDDYHQRKSFSSGRIPRHAASLMVADEMIGVPVPRKARSACLKRSHDCRTSSGSHSCEVVSPSSSTLSVKERKIVNGSKSRIPKPPKSSGTVEDDLEIEIAEVLSGLKKQPHSSKRGDDSENSQKSSEVKGIKQLPAGVEICGLFTCKARFDSANIDKSTNGAKTSLVVASDIVDEKEPRVSEGPQLENNKDESHCISKLDIHLMVPPTLPSSSGRVSLLPLVSDYCKRDSALKSKEKITVKNEMNPEEVKQKKVDKRYWLNLDIEGPNQETDRDSNLRLQNLDWSQPQQAKSAPHSSVLPLPVAVASWPSGVPPQGHVALIQTGKPVDESNGSSKLVQPRPKRCATHFFIARNIQLHQHFLKTNHLPTPNKGSVYLKGGDLRPTAGNPSLHGSSPILSLNSQPHVRNGDNISAPNVKASESGHFASTRQNKPQPPPASISVVPAPAFIYPANHHLQPVMVPSKSSRPTKSPHLAVGLASANFSHPSSSASEVSSPYLTVIPNNAYSFQLSSTIRGGTPSQAVPFYNGSFYSPQMFQQPPQPLQRQSQAQRESKASSCSSSSHRQPQVSVNSLSSQANVQQHRQMSQKFEVAGVNTDSRGSHTQKGGPFGQIMAAPVQPQNFSMSFASIASSAPPATLNFSSNGYHISTPPGVAHQKNHQSSEAKTGGGSCSSNAEDPKKNLQGKPQGMMNGHTLVFDNPSRTLNFVSGTWPPPAATAINGDPSVFTQHLTQRQQQSGRSKMMMTHSQADSVSATSSQWKNPATSSSLTSCTSLNLKQFQSQQQIRTHGQTQISFAAPTNPQPSQGKQGRSGGSSPSVTGSASHGKPANSKVSNSKALLLSPVPLSQEHTENPASGSTQKNSPVCGRTVPPIITSCPGHLSELKY", "length": 970, "header": "tr|A8MRY5-1|F4J0W8_ARATH Computationally mapped isoform of TIC-like protein OS=Arabidopsis thaliana OX=3702 GN=TKL PE=1 SV=1 CANONICAL=F4J0W8-1" }, "locus": { "chromosome": "3", "start_pos": 23336092, "end_pos": 23340317, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G63180.2", "url": "https://www.ensemblgenomes.org/id/AT3G63180.2" }, { "database": "Ensembl Peptide", "id": "AT3G63180.2", "url": "https://www.ensemblgenomes.org/id/AT3G63180.2" } ] } }, { "isoform_ac": "F4J0W8-1", "url": "https://www.uniprot.org/uniprotkb/F4J0W8/entry#F4J0W8-1", "sequence": { "sequence": "MDKPREARRSTTNMAASNGVTKRRQRISENSREQMHQEVATVRDRPGKKERDPESFNRSKRRRSERFAPRNERDVEEDSSDESQGDDDYHQRKSFSSGRIPRHAASLMVADEMIGVPVPRKARSACLKRSHDCRTSSGSHSCEVVSPSSSTLSVKERKIVNGSKSRIPKPPKSSGTVEDDLEIEIAEVLSGLKKQPHSSKRGDDSENSQKSSEVKGIKQLPAGVEICGLFTCKARFDSANIDKSTNGAKTSLVVASDIVDEKEPRVSEGPQLENNKDESHCISKLDIHLMVPPTLPSSSGRVSLLPLVSDYCKRDSALKSKEKITVKNEMNPEEVKQKKVDKRYWLNLDIEGPNQETDRDSNLRLQNLDWSQPQQAKSAPHSSVLPLPVAVASWPSGVPPQGHVALIQTGKPVDESNGSSKLVQGAPISASQPRPKRCATHFFIARNIQLHQHFLKTNHLPTPNKGSVYLKGGDLRPTAGNPSLHGSSPILSLNSQPHVRNGDNISAPNVKASESGHFASTRQNKPQPPPASISVVPAPAFIYPANHHLQPVMVPSKSSRPTKSPHLAVGLASANFSHPSSSASEVSSPYLTVIPNNAYSFQLSSTIRGGTPSQAVPFYNGSFYSPQMFQQPPQPLQRQSQAQRESKASSCSSSSHRQPQVSVNSLSSQANVQQHRQMSQKFEVAGVNTDSRGSHTQKGGPFGQIMAAPVQPQNFSMSFASIASSAPPATLNFSSNGYHISTPPGVAHQKNHQSSEAKTGGGSCSSNAEDPKKNLQGKPQGMMNGHTLVFDNPSRTLNFVSGTWPPPAATAINGDPSVFTQHLTQRQQQSGRSKMMMTHSQADSVSATSSQWKNPATSSSLTSCTSLNLKQFQSQQQIRTHGQTQISFAAPTNPQPSQGKQGRSGGSSPSVTGSASHGKPANSKVSNSKALLLSPVPLSQEHTENPASGSTQKNSPVCGRTVPPIITSCPGHLSELKY", "length": 978, "header": "tr|F4J0W8-1|F4J0W8_ARATH Isoform 1 of TIC-like protein OS=Arabidopsis thaliana OX=3702 GN=TKL PE=1 SV=1 CANONICAL=F4J0W8-1" }, "locus": { "chromosome": "3", "start_pos": 23336092, "end_pos": 23340340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G63180.1", "url": "https://www.ensemblgenomes.org/id/AT3G63180.1" }, { "database": "Ensembl Peptide", "id": "AT3G63180.1", "url": "https://www.ensemblgenomes.org/id/AT3G63180.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A8MRY5", "url": "https://www.uniprot.org/uniprotkb/A8MRY5" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A8MRY5", "url": "https://www.uniprot.org/uniprotkb/A8MRY5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ 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504, "end_pos": 506, "annotation": "n_glycosylation_sequon" }, { "start_pos": 575, "end_pos": 577, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 620, "end_pos": 622, "annotation": "n_glycosylation_sequon" }, { "start_pos": 714, "end_pos": 716, "annotation": "n_glycosylation_sequon" }, { "start_pos": 732, "end_pos": 734, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J0W8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 978, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J0W8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J0W8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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"count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J389-1", "uniprot_ac": "F4J389", "uniprot_id": "F4J389_ARATH", "mass": { "chemical_mass": 18984.0, "monoisotopic_mass": 18984.0 }, "refseq": { "ac": "NP_974409", "name": "altered inheritance of mitochondria protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974409" }, "gene_names": [], "protein_names": [ { "name": "Altered inheritance of mitochondria protein", "type": "synonym", "evidence": [ { "id": "F4J389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J389/entry#names_and_taxonomy" } ] }, { "name": "altered inheritance of mitochondria protein", "type": "synonym", "evidence": [ { "id": "NP_974409", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974409" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J389", "url": "https://www.uniprot.org/uniprotkb/F4J389" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J389", "locus": {} } ], "crossref": [ { "id": "F4J389", "url": "https://alphafold.ebi.ac.uk/entry/F4J389", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G51100", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G51100", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824274", "url": "https://www.ncbi.nlm.nih.gov/gene/824274", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR058517", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058517", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G51100", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G51100", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "THAHNRE", "url": "https://omabrowser.org/oma/group/THAHNRE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34566", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34566", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34566:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34566:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF26631", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26631", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_974409", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974409", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G51100", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G51100", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "B3H4P5", "url": "https://www.uniprot.org/uniprotkb/B3H4P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H4P5-1", "url": "https://www.uniprot.org/uniprotkb/B3H4P5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J389", "url": "https://www.uniprot.org/uniprotkb/F4J389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J389-1", "url": "https://www.uniprot.org/uniprotkb/F4J389-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SD36", "url": "https://www.uniprot.org/uniprotkb/Q9SD36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SD36-1", "url": "https://www.uniprot.org/uniprotkb/Q9SD36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNEGSSEEVTRTVMEEKPEQKQRGSLEKGRSCKGYLYYSSTLKSKSKNPRCVGIPRTLRQVPDYVVGQSEAEASKEGRTLADFYYGCLGYSVYMTDKDSSAIKQHTKTQLPVCVGLEILADRRAASGNTSSVPARVQNRKDSREVPVPQHQNNKPASATATATNTENGFLTR", "length": 172, "header": "tr|F4J389-1|F4J389_ARATH Isoform 1 of Altered inheritance of mitochondria protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J389-1" }, "isoforms": [ { "isoform_ac": "B3H4P5-1", "url": "https://www.uniprot.org/uniprotkb/F4J389/entry#B3H4P5-1", "sequence": { "sequence": "MNEGSSEEVTRTVMEEKPEQKQRGSLEKGRSCKGYLYYSSTLKSKSKNPRCVGIPRTLRQAEASKEGRTLADFYYGCLGYSVYMTDKDSSAIKQHTKTQLPVCVGLEILADRRAASGNTSSVPARVQNRKDSREVPVPQHQNNKPASATATATNTENGFLTRFTRNANLVAAGVMKNMKRVGNYVKETVDDSLDPYRKRPK", "length": 201, "header": "tr|B3H4P5-1|F4J389_ARATH Computationally mapped isoform of Altered inheritance of mitochondria protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J389-1" }, "locus": { "chromosome": "3", "start_pos": 18980263, "end_pos": 18982291, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G51100.3", "url": "https://www.ensemblgenomes.org/id/AT3G51100.3" }, { "database": "Ensembl Peptide", "id": "AT3G51100.3", "url": "https://www.ensemblgenomes.org/id/AT3G51100.3" } ] } }, { "isoform_ac": "F4J389-1", "url": "https://www.uniprot.org/uniprotkb/F4J389/entry#F4J389-1", "sequence": { "sequence": "MNEGSSEEVTRTVMEEKPEQKQRGSLEKGRSCKGYLYYSSTLKSKSKNPRCVGIPRTLRQVPDYVVGQSEAEASKEGRTLADFYYGCLGYSVYMTDKDSSAIKQHTKTQLPVCVGLEILADRRAASGNTSSVPARVQNRKDSREVPVPQHQNNKPASATATATNTENGFLTR", "length": 172, "header": "tr|F4J389-1|F4J389_ARATH Isoform 1 of Altered inheritance of mitochondria protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J389-1" }, "locus": { "chromosome": "3", "start_pos": 18980631, "end_pos": 18982291, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G51100.2", "url": "https://www.ensemblgenomes.org/id/AT3G51100.2" }, { "database": "Ensembl Peptide", "id": "AT3G51100.2", "url": "https://www.ensemblgenomes.org/id/AT3G51100.2" } ] } }, { "isoform_ac": "Q9SD36-1", "url": "https://www.uniprot.org/uniprotkb/F4J389/entry#Q9SD36-1", "sequence": { "sequence": "MNEGSSEEVTRTVMEEKPEQKQRGSLEKGRSCKGYLYYSSTLKSKSKNPRCVGIPRTLRQVPDYVVGQSEAEASKEGRTLADFYYGCLGYSVYMTDKDSSAIKQHTKTQLPVCVGLEILADRRAASGNTSSVPARVQNRKDSREVPVPQHQNNKPASATATATNTENGFLTRFTRNANLVAAGVMKNMKRVGNYVKETVDDSLDPYRKRPK", "length": 211, "header": "tr|Q9SD36-1|F4J389_ARATH Computationally mapped isoform of Altered inheritance of mitochondria protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J389-1" }, "locus": { "chromosome": "3", "start_pos": 18980217, "end_pos": 18982407, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G51100.1", "url": "https://www.ensemblgenomes.org/id/AT3G51100.1" }, { "database": "Ensembl Peptide", "id": "AT3G51100.1", "url": "https://www.ensemblgenomes.org/id/AT3G51100.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "B3H4P5", "url": "https://www.uniprot.org/uniprotkb/B3H4P5" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "B3H4P5", "url": "https://www.uniprot.org/uniprotkb/B3H4P5" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H4P5", "url": "https://www.uniprot.org/uniprotkb/B3H4P5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G51100", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G51100", "resource": "KEGG Pathway" } ], "orthologs": 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"field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IVK3-1", "uniprot_ac": "F4IVK3", "uniprot_id": "F4IVK3_ARATH", "mass": { "chemical_mass": 28318.0, "monoisotopic_mass": 28318.0 }, "refseq": { "ac": 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"NP_180249", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180249" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IVK3", "url": "https://www.uniprot.org/uniprotkb/F4IVK3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IVK3", "locus": {} } ], "crossref": [ { "id": "AT2G26810", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G26810", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817222", "url": "https://www.ncbi.nlm.nih.gov/gene/817222", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G26810", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G26810", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WGNSDHI", "url": "https://omabrowser.org/oma/group/WGNSDHI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23108", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23108", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23108:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23108:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10294", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10294", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_180249", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180249", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G26810", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G26810", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AX16", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AX16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AX16-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AX16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H597", "url": "https://www.uniprot.org/uniprotkb/B3H597", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H597-1", "url": "https://www.uniprot.org/uniprotkb/B3H597-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IVK3", "url": "https://www.uniprot.org/uniprotkb/F4IVK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IVK3-1", "url": "https://www.uniprot.org/uniprotkb/F4IVK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSESDKGREAIVEEEEEEIVCLESFFINDDYQLTKFTFGSHVLELYCLQSASTDFDLTGQLVWPGAMLMNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHNDEVLKILKKNIDLHGHSSGPKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGADICFQQSSVPLLFDSVEQLLRIRGQGNCKFILAYVSRARQMDSAILREGAQHGMLMNEVSGTRCTVGNLEGVIYEITLQKKRGIVFE", "length": 256, "header": "tr|F4IVK3-1|F4IVK3_ARATH Isoform 1 of Methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IVK3-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AX16-1", "url": "https://www.uniprot.org/uniprotkb/F4IVK3/entry#A0A1P8AX16-1", "sequence": { "sequence": "MSNFVTQTNVCFIWFLNLDQVSAFGFLNIHVCFVFVGCSYQLTKFTFGSHVLELYCLQSASTDFDLTGQLVWPGAMLMNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHNDEVLKILKKNIDLHGHSSGPKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGADIYILMFVNEFFIYPLGQWLILVLSVVEVLVRIFCSVFIS", "length": 217, "header": "tr|A0A1P8AX16-1|F4IVK3_ARATH Computationally mapped isoform of Methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IVK3-1" }, "locus": { "chromosome": "2", "start_pos": 11433662, "end_pos": 11436291, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G26810.5", "url": "https://www.ensemblgenomes.org/id/AT2G26810.5" }, { "database": "Ensembl Peptide", "id": "AT2G26810.5", "url": "https://www.ensemblgenomes.org/id/AT2G26810.5" } ] } }, { "isoform_ac": "B3H597-1", "url": "https://www.uniprot.org/uniprotkb/F4IVK3/entry#B3H597-1", "sequence": { "sequence": "MGSESDKGREAIVEEEEEEIVCLESFFINDDYQLTKFTFGSHVLELYCLQSASTDFDLTGQLVWPGAMLMNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHNDEVLKILKKNIDLHGHSSGPKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGADIYILMFVNEFFIYPLGQWLILVLSVVEVLVRIFCSVFIS", "length": 209, "header": "tr|B3H597-1|F4IVK3_ARATH Computationally mapped isoform of Methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IVK3-1" }, "locus": { "chromosome": "2", "start_pos": 11433662, "end_pos": 11436291, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G26810.4", "url": "https://www.ensemblgenomes.org/id/AT2G26810.4" }, { "database": "Ensembl Peptide", "id": "AT2G26810.4", "url": "https://www.ensemblgenomes.org/id/AT2G26810.4" } ] } }, { "isoform_ac": "F4IVK3-1", "url": "https://www.uniprot.org/uniprotkb/F4IVK3/entry#F4IVK3-1", "sequence": { "sequence": "MGSESDKGREAIVEEEEEEIVCLESFFINDDYQLTKFTFGSHVLELYCLQSASTDFDLTGQLVWPGAMLMNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHNDEVLKILKKNIDLHGHSSGPKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGADICFQQSSVPLLFDSVEQLLRIRGQGNCKFILAYVSRARQMDSAILREGAQHGMLMNEVSGTRCTVGNLEGVIYEITLQKKRGIVFE", "length": 256, "header": "tr|F4IVK3-1|F4IVK3_ARATH Isoform 1 of Methyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IVK3-1" }, "locus": { "chromosome": "2", "start_pos": 11433733, "end_pos": 11436277, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G26810.1", "url": "https://www.ensemblgenomes.org/id/AT2G26810.1" }, { "database": "Ensembl Peptide", "id": "AT2G26810.1", "url": "https://www.ensemblgenomes.org/id/AT2G26810.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "B3H597", "url": "https://www.uniprot.org/uniprotkb/B3H597" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H597", "url": "https://www.uniprot.org/uniprotkb/B3H597" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G26810", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G26810", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54NK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLKDDNNDIGQHQPSQQQQQNNNEDNDDMSVGDLFLNKSYVKKTLEYFGVNVNLNVLDSASTDFDLTGQVIWPSAQVLTQYIIKNQEEYKNKKILEVGSGVGVCGLFLAKLGQPCTLSDNNEVVLDLLRLNVEESTADGYKCDCIKLDWGNQEDMDNCLLKSKDNDNSAGGFDMIIGSDIVYWKIGIVPLFKTVSYLLKHNDENSRFVTCYQSRSTQTDNYLLEQATLHGFEYEFKPIETFLDRSLLTFNEDSTISIINLIIFKRIKKN", "length": 269 }, "evidence": [ { "id": "F4IVK3", "url": "https://omabrowser.org/oma/group/F4IVK3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein methyltransferase activity", "id": "GO:0008276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008276", "evidence": [ { "database": "UniProtKB", "id": "F4IVK3", "url": "https://www.uniprot.org/uniprotkb/F4IVK3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "F4IVK3", "url": "https://www.uniprot.org/uniprotkb/F4IVK3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IVK3", "url": "https://www.uniprot.org/uniprotkb/F4IVK3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IVK3", "url": "https://www.uniprot.org/uniprotkb/F4IVK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IPV3-1", "uniprot_ac": "F4IPV3", "uniprot_id": "F4IPV3_ARATH", "mass": { "chemical_mass": 66232.0, "monoisotopic_mass": 66232.0 }, "refseq": { "ac": "NP_180656", "name": "arginine N-methyltransferase, putative (DUF688)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180656" }, "gene_names": [ { "name": "F7F1.20", "type": "synonym", "evidence": [ { "id": "NP_180656", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180656" }, { "id": "F4IPV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPV3" } ] }, { "name": "F7F1_20", "type": "synonym", "evidence": [ { "id": "NP_180656", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180656" }, { "id": "F4IPV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPV3" } ] } ], "protein_names": [ { "name": "Arginine N-methyltransferase, putative (DUF688)", "type": "synonym", "evidence": [ { "id": "F4IPV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPV3/entry#names_and_taxonomy" } ] }, { "name": "arginine N-methyltransferase, putative (DUF688)", "type": "synonym", "evidence": [ { "id": "NP_180656", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180656" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IPV3", "url": "https://www.uniprot.org/uniprotkb/F4IPV3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IPV3", "locus": {} } ], "crossref": [ { "id": "AT2G30990", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G30990", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817650", "url": "https://www.ncbi.nlm.nih.gov/gene/817650", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007789", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007789", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G30990", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G30990", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYAPRKQ", "url": "https://omabrowser.org/oma/group/HYAPRKQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "B3H6L8", "url": "https://www.orthodb.org/?gene=B3H6L8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IPV3", "url": "https://www.orthodb.org/?gene=F4IPV3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33671", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33671", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33671:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33671:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_180656", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180656", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G30990", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G30990", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "B3H6L8", "url": "https://www.uniprot.org/uniprotkb/B3H6L8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H6L8-1", "url": "https://www.uniprot.org/uniprotkb/B3H6L8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IPV3", "url": "https://www.uniprot.org/uniprotkb/F4IPV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IPV3-1", "url": "https://www.uniprot.org/uniprotkb/F4IPV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLMGSLMMEEKQLDFNRPLISIRRPTQTSESESKTRSFDSVTNMIPPSPPVYKSDIKSGPVRNPGTVPFQWEHKPGKPKDERKPVLQSFVEPHFVPKLPPGRERVVELGRKPESTGADHQTKTVSSSDKYLVEDAKSNSSRYDDDDDDSDGTYLDATDTLSRTESFFFNCSAVSGASGLDGSGILVEPFGTLSTDRQTQDLMMGRFLPAAKALTSESPPHLARKPPKPEEPVKQLMKKKQNKVEQNPYRFRHSPDQEEEDGNISSMMASGVCGLLPQLCLRSSLGLLNPVPSVRMQQQRAVSVRRMRSKYQDSAPSNETHNKQNEDKRKLKLIESVAKGSSQGESLSVSSIPQGKEKLENVGTASRSKISKNFGELLASDENTWEPSSETPVAEKTLYVDIVHLVDKKVQEESKKQPILKESPSLDIVPVKDEEADISQPKSIEQENGNRDEDFTKFSSQKVEECPDHQAIVALPESDVVEITKEKKIDLEVQLQVITTNIESSRLHHRSSYLIVPPPPLPKAPSDSWLKRTLPTIPPKNNSFAWLQSLGTDDDNHFTKTQANPKWETMVKTSNTQQGFVCFSKETLNPIPES", "length": 593, "header": "tr|F4IPV3-1|F4IPV3_ARATH Isoform 1 of Arginine N-methyltransferase, putative (DUF688) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPV3-1" }, "isoforms": [ { "isoform_ac": "B3H6L8-1", "url": "https://www.uniprot.org/uniprotkb/F4IPV3/entry#B3H6L8-1", "sequence": { "sequence": "MLMGSLMMEEKQLDFNRPLISIRRPTQTSESESKTRSFDSVTNMIPPSPPVYKSDIKSGPVRNPGTVPFQWEHKPGKPKDERKPVLQSFVEPHFVPKLPPGRERVVELGRKPESTGADHQTKTVSSSDKYLVEDAKSNSSRAVSGASGLDGSGILVEPFGTLSTDRQTQDLMMGRFLPAAKALTSESPPHLARKPPKPEEPVKQLMKKKQNKVEQNPYRFRHSPDQEEEDGNISSMMASGVCGLLPQLCLRSSLGLLNPVPSVRMQQQRAVSVRRMRSKYQDSAPSNETHNKQNEDKRKLKLIESVAKGSSQGESLSVSSIPQGKEKLENVGTASRSKISKNFGELLASDENTWEPSSETPVAEKTLYVDIVHLVDKKVQEESKKQPILKESPSLDIVPVKDEEADISQPKSIEQENGNRDEDFTKFSSQKVEECPDHQAIVALPESDVVEITKEKKIDLEVQLQVITTNIESSRLHHRSSYLIVPPPPLPKAPSDSWLKRTLPTIPPKNNSFAWLQSLGTDDDNHFTKTQANPKWETMVKTSNTQQGFVCFSKETLNPIPES", "length": 563, "header": "tr|B3H6L8-1|F4IPV3_ARATH Computationally mapped isoform of Arginine N-methyltransferase, putative (DUF688) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPV3-1" }, "locus": { "chromosome": "2", "start_pos": 13187407, "end_pos": 13190458, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30990.3", "url": "https://www.ensemblgenomes.org/id/AT2G30990.3" }, { "database": "Ensembl Peptide", "id": "AT2G30990.3", "url": "https://www.ensemblgenomes.org/id/AT2G30990.3" } ] } }, { "isoform_ac": "F4IPV3-1", "url": "https://www.uniprot.org/uniprotkb/F4IPV3/entry#F4IPV3-1", "sequence": { "sequence": "MLMGSLMMEEKQLDFNRPLISIRRPTQTSESESKTRSFDSVTNMIPPSPPVYKSDIKSGPVRNPGTVPFQWEHKPGKPKDERKPVLQSFVEPHFVPKLPPGRERVVELGRKPESTGADHQTKTVSSSDKYLVEDAKSNSSRYDDDDDDSDGTYLDATDTLSRTESFFFNCSAVSGASGLDGSGILVEPFGTLSTDRQTQDLMMGRFLPAAKALTSESPPHLARKPPKPEEPVKQLMKKKQNKVEQNPYRFRHSPDQEEEDGNISSMMASGVCGLLPQLCLRSSLGLLNPVPSVRMQQQRAVSVRRMRSKYQDSAPSNETHNKQNEDKRKLKLIESVAKGSSQGESLSVSSIPQGKEKLENVGTASRSKISKNFGELLASDENTWEPSSETPVAEKTLYVDIVHLVDKKVQEESKKQPILKESPSLDIVPVKDEEADISQPKSIEQENGNRDEDFTKFSSQKVEECPDHQAIVALPESDVVEITKEKKIDLEVQLQVITTNIESSRLHHRSSYLIVPPPPLPKAPSDSWLKRTLPTIPPKNNSFAWLQSLGTDDDNHFTKTQANPKWETMVKTSNTQQGFVCFSKETLNPIPES", "length": 593, "header": "tr|F4IPV3-1|F4IPV3_ARATH Isoform 1 of Arginine N-methyltransferase, putative (DUF688) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPV3-1" }, "locus": { "chromosome": "2", "start_pos": 13187407, "end_pos": 13190458, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30990.2", "url": "https://www.ensemblgenomes.org/id/AT2G30990.2" }, { "database": "Ensembl Peptide", "id": "AT2G30990.2", "url": "https://www.ensemblgenomes.org/id/AT2G30990.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 217, "end_pos": 217, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IPV3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IPV3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser217" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "B3H6L8", "url": "https://www.uniprot.org/uniprotkb/B3H6L8" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4IPV3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IPV3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IPV3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IPV3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H6L8", "url": "https://www.uniprot.org/uniprotkb/B3H6L8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G30990", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G30990", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IPV3", "url": "https://www.uniprot.org/uniprotkb/F4IPV3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 540, "end_pos": 542, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 217 ], "sequon_annotation_sites": [ { "start_pos": 138, "end_pos": 140 }, { "start_pos": 169, "end_pos": 171 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 317, "end_pos": 319 }, { "start_pos": 540, "end_pos": 542 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4INT5-1", "uniprot_ac": "F4INT5", "uniprot_id": "F4INT5_ARATH", "mass": { "chemical_mass": 80660.0, "monoisotopic_mass": 80660.0 }, "refseq": {}, "gene_names": [ { "name": "T6B20.25", "type": "synonym", "evidence": [ { "id": "F4INT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4INT5" } ] }, { "name": "T6B20_25", "type": "synonym", "evidence": [ { "id": "F4INT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4INT5" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4INT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4INT5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4INT5", "url": "https://www.uniprot.org/uniprotkb/F4INT5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4INT5", "locus": {} } ], "crossref": [ { "id": "AT2G30480", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G30480", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817598", "url": "https://www.ncbi.nlm.nih.gov/gene/817598", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT2G30480", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G30480", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DKHYRSP", "url": "https://omabrowser.org/oma/group/DKHYRSP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR37722", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37722", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37722:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37722:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT2G30480", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G30480", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AZT8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AZT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AZT9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AZT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZT9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AZU1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AZU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H6W6", "url": "https://www.uniprot.org/uniprotkb/B3H6W6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H6W6-1", "url": "https://www.uniprot.org/uniprotkb/B3H6W6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4INT5", "url": "https://www.uniprot.org/uniprotkb/F4INT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4INT5-1", "url": "https://www.uniprot.org/uniprotkb/F4INT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4INT8", "url": "https://www.uniprot.org/uniprotkb/F4INT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4INT8-1", "url": "https://www.uniprot.org/uniprotkb/F4INT8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLQWMGGSRRKVAASHTSVKKRQKQYFEQRRQQQHQFTVGSESCSNDINNSNQHLREHQSLDILNLLNLSTATPECKPSGPENGMQDLDADFYSLKDNMSGVGSSFNHIAEPTSSKRTLFSIPDNQTNDFKKANTDNQTNDFKKTNTTADLMDGTERKLSVFDLVGDDHTTTNLEECSPSEAHMAFSVEGLGKINTETPVNSPQPSDRTFVYRCSSPWKDTGQPDTSHVRGRLNDFENEVDTMIQSSKMFQDDSLYRSPIGIHAKDGGRKQKLQTFSDHLHKQYSDSRNYFCDVADFNNSRFSDDEWNAKPAFLDDGEDSFYWKAEQPCQKESLNPDFLKYCNDCTESRSSTEHHRKKKRDYLETTWRSNIRDSPTRRSHLLKRNIDYPSFAKAATSDFDFDNVFDRPVWSSIVLEEDKDSHSLRSEESCSSSAVWTNETHNSQFETNTRQRKRETNKFSNLGDKKYINTDLFQESWEDWEVDDQHMKRQVRSGKQGRLSNSGKLKSTSQRKGGLDASYDWFGEGFTSAGINSEITSERNKPYPFLNPERGSSHWRSSRAPDSIPETWIPKFSVGGTGDDDDGDHDEEDYVNCLSANHKSKLAGDTCGFENDTLSENDNEQSREVNHPKNQGDETSSSIAKSLSDENDVVRCNPNKEVMEARHQRNRESGEKTSRDPFQQMIMLERRTLQLVCFNKALLLDSLKT", "length": 705, "header": "tr|F4INT5-1|F4INT5_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4INT5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AZT8-1", "url": "https://www.uniprot.org/uniprotkb/F4INT5/entry#A0A1P8AZT8-1", "sequence": { "sequence": "MDGTERKLSVFDLVGDDHTTTNLEECSPSEAHMAFSVEGLGKINTETPVNSPQPSDRTFVYRCSSPWKDTGQPDTSHVRGRLNDFENEVDTMIQSSKMFQDDSLYRSPIGIHAKDGGRKQKLQTFSDHLHKQYSDSRNYFCDVADFNNSRFSDDEWNAKPAFLDDGEDSFYWKAEQPCQKESLNPDFLKYCNDCTESRSSTEHHRKKKRDYLETTWRSNIRDSPTRRSHLLKRNIDYPSFAKAATSDFDFDNVFDRPVWSSIVLEEDKDSHSLRSEESCSSSAVWTNETHNSQFETNTRQRKRETNKFSNLGDKKYINTDLFQESWEDWEVDDQHMKRQVRSGKQGRLSNSGKLKSTSQRKGGLDASYDWFGEGFTSAGINSEITSERNKPYPFLNPERGSSHWRSSRAPDSIPETWIPKFSVGGTGDDDDGDHDEEDYVNCLSANHKSKLAGDTCGFENDTLSENDNEQSREVNHPKNQGDETSSSIAKSLSDENDVVRCNPNKEVMEARHQRNRESGEKTSRDPFQQMIMLERRTLQLVCFNKALLLDSLKT", "length": 554, "header": "tr|A0A1P8AZT8-1|F4INT5_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4INT5-1" }, "locus": { "chromosome": "2", "start_pos": 12987761, "end_pos": 12992804, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30480.11", "url": "https://www.ensemblgenomes.org/id/AT2G30480.11" }, { "database": "Ensembl Peptide", "id": "AT2G30480.11", "url": "https://www.ensemblgenomes.org/id/AT2G30480.11" } ] } }, { "isoform_ac": "A0A1P8AZT9-1", "url": "https://www.uniprot.org/uniprotkb/F4INT5/entry#A0A1P8AZT9-1", "sequence": { "sequence": "MLQWMGGSRRKVAASHTSVKKRQKQYFEQRRQQQHQFTVGSESCSNDINNSNQHLREHQSLDILNLLNLSTATPECKPSGPENGMQDLDADFYSLKDNMSGVGSSFNHIAEPTSSKRTLFSIPDNQTNDFKKANTDNQTNDFKKTNTTADLMDGTERKLSVFDLVGDDHTTTNLEECSPSEAHMAFSVEGLGKINTETPVNSPQPSDRTFVYRCSSPWKDTGQPDTSHVRGRLNDFENEVDTMIQSSKMFQDDSLYRSPIGIHAKDGGRKQKLQTFSDHLHKQYSDSRNYFCDVADFNNSRFSDDEWNAKPAFLDDGEDSFYWKAEQPCQKESLNPDFLKYCNDCTESRSSTEHHRKKKRDYLETTWRSNIRDSPTRRSHLLKRNIDYPSFAKAATSDFDFDNVFDRPVWSSIVLEEDKDSHSLRSEESCSSSAVWTNETHNSQFETNTRQRKRETNKFSNLGDKKYINTDLFQESWEDWEVDDQHMKRQVRSGKQGRLSNSGKLKSTSQRKGGLDASYDWFGEGFTSAGINSEITSERNKPYPFLNPERGSSHWRSSRAPDSIPETWIPKFSVGGTGDDDDGDHDEEDYVNCLSANHKSKLAGDTCGFENDTLSENDNEQSREVNHPKNQGDETSSSIAKSLSDENEYCC", "length": 651, "header": "tr|A0A1P8AZT9-1|F4INT5_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4INT5-1" }, "locus": { "chromosome": "2", "start_pos": 12987240, "end_pos": 12993416, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30480.7", "url": "https://www.ensemblgenomes.org/id/AT2G30480.7" }, { "database": "Ensembl Peptide", "id": "AT2G30480.7", "url": "https://www.ensemblgenomes.org/id/AT2G30480.7" } ] } }, { "isoform_ac": "A0A1P8AZU1-1", "url": "https://www.uniprot.org/uniprotkb/F4INT5/entry#A0A1P8AZU1-1", "sequence": { "sequence": "MQDLDADFYSLKDNMSGVGSSFNHIAEPTSSKRTLFSIPDNQTNDFKKANTDNQTNDFKKTNTTADLMDGTERKLSVFDLVGDDHTTTNLEECSPSEAHMAFSVEGLGKINTETPVNSPQPSDRTFVYRCSSPWKDTGQPDTSHVRGRLNDFENEVDTMIQSSKMFQDDSLYRSPIGIHAKDGGRKQKLQTFSDHLHKQYSDSRNYFCDVADFNNSRFSDDEWNAKPAFLDDGEDSFYWKAEQPCQKESLNPDFLKYCNDCTESRSSTEHHRKKKRDYLETTWRSNIRDSPTRRSHLLKRNIDYPSFAKAATSDFDFDNVFDRPVWSSIVLEEDKDSHSLRSEESCSSSAVWTNETHNSQFETNTRQRKRETNKFSNLGDKKYINTDLFQESWEDWEVDDQHMKRQVRSGKQGRLSNSGKLKSTSQRKGGLDASYDWFGEGFTSAGINSEITSERNKPYPFLNPERGSSHWRSSRAPDSIPETWIPKFSVGGTGDDDDGDHDEEDYVNCLSANHKSKLAGDTCGFENDTLSENDNEQSREVNHPKNQGDETSSSIAKSLSDENEYCC", "length": 567, "header": "tr|A0A1P8AZU1-1|F4INT5_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4INT5-1" }, "locus": { "chromosome": "2", "start_pos": 12987096, "end_pos": 12992970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30480.6", "url": "https://www.ensemblgenomes.org/id/AT2G30480.6" }, { "database": "Ensembl Peptide", "id": "AT2G30480.6", "url": "https://www.ensemblgenomes.org/id/AT2G30480.6" } ] } }, { "isoform_ac": "B3H6W6-1", "url": "https://www.uniprot.org/uniprotkb/F4INT5/entry#B3H6W6-1", "sequence": { "sequence": "MIQSSKMFQDDSLYRSPIGIHAKDGGRKQKLQTFSDHLHKQYSDSRNYFCDVADFNNSRFSDDEWNAKPAFLDDGEDSFYWKAEQPCQKESLNPDFLKYCNDCTESRSSTEHHRKKKRDYLETTWRSNIRDSPTRRSHLLKRNIDYPSFAKAATSDFDFDNVFDRPVWSSIVLEEDKDSHSLRSEESCSSSAVWTNETHNSQFETNTRQRKRETNKFSNLGDKKYINTDLFQESWEDWEVDDQHMKRQVRSGKQGRLSNSGKLKSTSQRKGGLDASYDWFGEGFTSAGINSEITSERNKPYPFLNPERGSSHWRSSRAPDSIPETWIPKFSVGGTGDDDDGDHDEEDYVNCLSANHKSKLAGDTCGFENDTLSENDNEQSREVNHPKNQGDETSSSIAKSLSDENDVVRCNPNKEVMEARHQRNRESGEKTSRDPFQQMIMLERRTLQLVCFNKALLLDSLKT", "length": 463, "header": "tr|B3H6W6-1|F4INT5_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4INT5-1" }, "locus": { "chromosome": "2", "start_pos": 12987096, "end_pos": 12991417, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30480.4", "url": "https://www.ensemblgenomes.org/id/AT2G30480.4" }, { "database": "Ensembl Peptide", "id": "AT2G30480.4", "url": "https://www.ensemblgenomes.org/id/AT2G30480.4" } ] } }, { "isoform_ac": "F4INT5-1", "url": "https://www.uniprot.org/uniprotkb/F4INT5/entry#F4INT5-1", "sequence": { "sequence": "MLQWMGGSRRKVAASHTSVKKRQKQYFEQRRQQQHQFTVGSESCSNDINNSNQHLREHQSLDILNLLNLSTATPECKPSGPENGMQDLDADFYSLKDNMSGVGSSFNHIAEPTSSKRTLFSIPDNQTNDFKKANTDNQTNDFKKTNTTADLMDGTERKLSVFDLVGDDHTTTNLEECSPSEAHMAFSVEGLGKINTETPVNSPQPSDRTFVYRCSSPWKDTGQPDTSHVRGRLNDFENEVDTMIQSSKMFQDDSLYRSPIGIHAKDGGRKQKLQTFSDHLHKQYSDSRNYFCDVADFNNSRFSDDEWNAKPAFLDDGEDSFYWKAEQPCQKESLNPDFLKYCNDCTESRSSTEHHRKKKRDYLETTWRSNIRDSPTRRSHLLKRNIDYPSFAKAATSDFDFDNVFDRPVWSSIVLEEDKDSHSLRSEESCSSSAVWTNETHNSQFETNTRQRKRETNKFSNLGDKKYINTDLFQESWEDWEVDDQHMKRQVRSGKQGRLSNSGKLKSTSQRKGGLDASYDWFGEGFTSAGINSEITSERNKPYPFLNPERGSSHWRSSRAPDSIPETWIPKFSVGGTGDDDDGDHDEEDYVNCLSANHKSKLAGDTCGFENDTLSENDNEQSREVNHPKNQGDETSSSIAKSLSDENDVVRCNPNKEVMEARHQRNRESGEKTSRDPFQQMIMLERRTLQLVCFNKALLLDSLKT", "length": 705, "header": "tr|F4INT5-1|F4INT5_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4INT5-1" }, "locus": { "chromosome": "2", "start_pos": 12987761, "end_pos": 12993408, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30480.10", "url": "https://www.ensemblgenomes.org/id/AT2G30480.10" }, { "database": "Ensembl Peptide", "id": "AT2G30480.10", "url": "https://www.ensemblgenomes.org/id/AT2G30480.10" } ] } }, { "isoform_ac": "F4INT8-1", "url": "https://www.uniprot.org/uniprotkb/F4INT5/entry#F4INT8-1", "sequence": { "sequence": "MLQWMGGSRRKVAASHTSVKKRQKQYFEQRRQQQHQFTVGSESCSNDINNSNQHLREHQSLDILNLLNLSTATPECKPSGPENGMQDLDADFYSLKDNMSGVGSSFNHIAEPTSSKRTLFSIPDNQTNDFKKANTDNQTNDFKKTNTTADLMDGTERKLSVFDLVGDDHTTTNLEECSPSEAHMAFSVEGLGKINTETPVNSPQPSDRTFVYRCSSPWKDTGQPDTSHVRGRLNDFENEVDTMIQSSKMFQDDSLYRSPIGIHAKDGGRKQKLQTFSDHLHKQYSDSRNYFCDVADFNNSRFSDDEWNAKPAFLDDGEDSFYWKAEQPCQKESLNPDFLKYCNDCTESRSSTEHHRKKKRDYLETTWRSNIRDSPTRRSHLLKRNIDYPSFAKAATSDFDFDNVFDRPVWSSIVLEEDKDSHSLRSEESCSSSAVWTNETHNSQFETNTRQRKRETNKFSNLGDKKYINTDLFQESWEDWEVDDQHMKRQVRSGKQGRLSNSGKLKSTSQRKGGLDASYDWFGEGFTSAGINSEITSERNKPYPFLNPERGSSHWRSSRAPDSIPETWIPKFSVGGTGDDDDGDHDEEDYVNCLSANHKSKLAGDTCGFENDTLSENDNEQSREVNHPKNQGDETSSSIAKSLSDENEYM", "length": 650, "header": "tr|F4INT8-1|F4INT8_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4INT5-1" }, "locus": { "chromosome": "2", "start_pos": 12988267, "end_pos": 12993399, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G30480.2", "url": "https://www.ensemblgenomes.org/id/AT2G30480.2" }, { "database": "Ensembl Peptide", "id": "AT2G30480.2", "url": "https://www.ensemblgenomes.org/id/AT2G30480.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 15, "end_pos": 15, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4INT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4INT5" } ], "site_lbl": "Ser15" }, { "start_pos": 17, "end_pos": 17, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4INT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4INT5" } ], "site_lbl": "Thr17" }, { "start_pos": 93, "end_pos": 93, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4INT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4INT5" } ], "site_lbl": "Tyr93" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "B3H6W6", "url": "https://www.uniprot.org/uniprotkb/B3H6W6" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H6W6", "url": "https://www.uniprot.org/uniprotkb/B3H6W6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G30480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G30480", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", 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"https://www.uniprot.org/uniprotkb/A0A178VFU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IZV9", "url": "https://www.uniprot.org/uniprotkb/F4IZV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IZV9-1", "url": "https://www.uniprot.org/uniprotkb/F4IZV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SR38", "url": "https://www.uniprot.org/uniprotkb/Q9SR38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SR38-1", "url": "https://www.uniprot.org/uniprotkb/Q9SR38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVEITSPFGGSMRLLHLPKSYPIHCNMVSASNTFGSAHLKLQNKEPCSRLRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQWLRWDTLVVCLRVMKDCFLFLRRKINSFY", "length": 246, "header": "tr|F4IZV9-1|F4IZV9_ARATH Isoform 1 of Nuclear transport factor 2 (NTF2) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IZV9-1" }, "isoforms": [ { "isoform_ac": "A0A178VFU5-1", "url": "https://www.uniprot.org/uniprotkb/F4IZV9/entry#A0A178VFU5-1", "sequence": { "sequence": "MVEITSPFGGSMRLLHLPKSYPIHCNMVSASNTFGSAHLKLQNKEPCSRLRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQWFICIHHASPVDI", "length": 230, "header": "tr|A0A178VFU5-1|F4IZV9_ARATH Computationally mapped isoform of Nuclear transport factor 2 (NTF2) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IZV9-1" }, "locus": { "chromosome": "3", "start_pos": 2839254, "end_pos": 2840294, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G09250.3", "url": "https://www.ensemblgenomes.org/id/AT3G09250.3" }, { "database": "Ensembl Peptide", "id": "AT3G09250.3", "url": "https://www.ensemblgenomes.org/id/AT3G09250.3" } ] } }, { "isoform_ac": "F4IZV9-1", "url": "https://www.uniprot.org/uniprotkb/F4IZV9/entry#F4IZV9-1", "sequence": { "sequence": "MVEITSPFGGSMRLLHLPKSYPIHCNMVSASNTFGSAHLKLQNKEPCSRLRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQWLRWDTLVVCLRVMKDCFLFLRRKINSFY", "length": 246, "header": "tr|F4IZV9-1|F4IZV9_ARATH Isoform 1 of Nuclear transport factor 2 (NTF2) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IZV9-1" }, "locus": { "chromosome": "3", "start_pos": 2839000, "end_pos": 2840614, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G09250.2", "url": "https://www.ensemblgenomes.org/id/AT3G09250.2" }, { "database": "Ensembl Peptide", "id": "AT3G09250.2", "url": "https://www.ensemblgenomes.org/id/AT3G09250.2" } ] } }, { "isoform_ac": "Q9SR38-1", "url": "https://www.uniprot.org/uniprotkb/F4IZV9/entry#Q9SR38-1", "sequence": { "sequence": "MALHGSGVFCKVSNMVEITSPFGGSMRLLHLPKSYPIHCNMVSASNTFGSAHLKLQNKEPCSRLRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQWFICIHHASPVDI", "length": 244, "header": "tr|Q9SR38-1|F4IZV9_ARATH Computationally mapped isoform of Nuclear transport factor 2 (NTF2) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IZV9-1" }, "locus": { "chromosome": "3", "start_pos": 2838943, "end_pos": 2840583, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G09250.1", "url": "https://www.ensemblgenomes.org/id/AT3G09250.1" }, { "database": "Ensembl Peptide", "id": "AT3G09250.1", "url": "https://www.ensemblgenomes.org/id/AT3G09250.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9SR38", "url": "https://www.uniprot.org/uniprotkb/Q9SR38" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9SR38", "url": "https://www.uniprot.org/uniprotkb/Q9SR38" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G09250", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G09250", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IZV9", "url": "https://www.uniprot.org/uniprotkb/F4IZV9" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4IZV9", "url": 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"https://www.uniprot.org/uniprotkb/F4IG63", "locus": {} } ], "crossref": [ { "id": "F4IG63", "url": "https://alphafold.ebi.ac.uk/entry/F4IG63", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G45460", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G45460", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "819154", "url": "https://www.ncbi.nlm.nih.gov/gene/819154", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G45460", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G45460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YENTIMG", "url": "https://omabrowser.org/oma/group/YENTIMG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47458", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47458", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47458:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47458:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00498", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00498", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G45460", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G45460", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A178VPL7", "url": "https://www.uniprot.org/uniprotkb/A0A178VPL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A178VPL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A178VPL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IG61", "url": "https://www.uniprot.org/uniprotkb/F4IG61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IG61-1", "url": "https://www.uniprot.org/uniprotkb/F4IG61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IG62", "url": "https://www.uniprot.org/uniprotkb/F4IG62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IG62-1", "url": "https://www.uniprot.org/uniprotkb/F4IG62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IG63", "url": "https://www.uniprot.org/uniprotkb/F4IG63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IG63-1", "url": "https://www.uniprot.org/uniprotkb/F4IG63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASTAAEQDERKIVSVASNASQDIKTAAAASRISSQNGASPSPSLNSKDFIVSAAANIASQPLQNYDSNVWGVLTAISSNARKRRQGINILLTSDEHCLGRLPCHASYQVESNAISGNHCKVFRKPVTGGDGDDVTVFMVDTSTNGTFLNWERLTKNGPEVRVQHGDIISLAVPPEHEKAFAFVYREVLGNNPALSCMNRKRKAEDTTCEIKRQKGIGISGPNGPISLDDFKSLQRSNTELRKQLEAQVLTIDTLRNESRSIVEHHESDYLSISTEISLHLQEIKQIKESTAKSFHNELIELRDQLDTKQKELAQVNKLSAEQKNSIDELGERVSASLQTLSEANEVIQSQKASIAELKTGLDEERNQRREERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEVINKMKESEKEKSMQVETLMSKLEDTRQRLVCSENRNRLLEAQVSEEQLAFADAQKKLEELDLQVKRLQKDLDSEKQAAREEAWAKVSALELEISAAVRDLDVERQRHRGARERIMLRETQMRAFYSTTEEISALFAKQQEQLKTMQRTLEDEDNCDNTSLDIDLNPINRSPNRANTQGDKRATSHLNFAARASSSTSGQRSTRNEVVDTSCEDADATQKHDCEIMSQEGQNTQEAEYPSSDKVAKGGFGSDIEGIGTAPTSGTDPVGTEQVNETQSPGNDYERNDHLRKSIILAGDTMQIDCETQVHESVQIEGAVLLLRNPNDRRDTQDIEGVGTIGTSDLLASEVAGSWANSTNPSVHGENETERSREDEESQTQKIKEVTIVQDSAGQIGESQTKPTSPGVLVTNKDDAERGVINEPVGITDQGKIKHGTRSDSETESCSDSDDDHEKEKHNPVSDSDTEGSDMNDDKGSLSSDPDTERSHEVDGDQKKQVDTMDEDDKAT", "length": 916, "header": "tr|F4IG63-1|F4IG63_ARATH Isoform 1 of SMAD/FHA domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IG63-1" }, "isoforms": [ { "isoform_ac": "A0A178VPL7-1", "url": "https://www.uniprot.org/uniprotkb/F4IG63/entry#A0A178VPL7-1", "sequence": { "sequence": "MASTAAEQDERKIVSVASNASQDIKTAAAASRISSQNGASPSPSLNSKDFIVSAAANIASQPLQNYDSNVWGVLTAISSNARKRRQGINILLTSDEHCLGRLPCHASYQVESNAISGNHCKVFRKPVTGGDGDDVTVFMVDTSTNGTFLNWERLTKNGPEVRVQHGDIISLAVPPEHEKAFAFVYREVLGNNPALSCMNRKRKAEDTTCEIKRQKGIGISGPNGPISLDDFKSLQRSNTELRKQLEAQVLTIDTLRNESRSIVEHHESEIKQIKESTAKSFHNELIELRDQLDTKQKELAQVNKLSAEQKNSIDELGERVSASLQTLSEANEVIQSQKASIAELKTGLDEERNQRREERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEVINKMKESEKEKSMQVETLMSKLEDTRQRLVCSENRNRLLEAQVSEEQLAFADAQKKLEELDLQVKRLQKDLDSEKAAREEAWAKVSALELEISAAVRDLDVERQRHRGARERIMLRETQMRAFYSTTEEISALFAKQQEQLKTMQRTLEDEDNCDNTSLDIDLNPINRSPNRANTQGDKRATSHLNFAARASSSTSGQRSTRNEVVDTSCEDADATQKHDCEIMSQEGQNTQEAEYPSSDKVAKGGFGSDIEGIGTAPTSGTDPVGTEQVNETQSPGNDYERNDHLRKSIILAGDTMQIDCETQVHESVQIEGAVLLLRNPNDRRDTQDIEGVGTIGTSDLLASEVAGSWANSTNPSVHGENETERSREDEESQTQKIKEVTIVQDSAGQIGESQTKPTSPGVLVTNKDDAERGVINEPVGITDQGKIKHGTRSDSETESCSDSDDDHEKEKHNPVSDSDTEGSDMNDDKGSLSSDPDTERSHEVDGDQKKQVDTMDEDDKAT", "length": 901, "header": "tr|A0A178VPL7-1|F4IG63_ARATH Computationally mapped isoform of SMAD/FHA domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IG63-1" }, "locus": { "chromosome": "2", "start_pos": 18736826, "end_pos": 18741881, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G45460.4", "url": "https://www.ensemblgenomes.org/id/AT2G45460.4" }, { "database": "Ensembl Peptide", "id": "AT2G45460.4", "url": "https://www.ensemblgenomes.org/id/AT2G45460.4" } ] } }, { "isoform_ac": "F4IG61-1", "url": "https://www.uniprot.org/uniprotkb/F4IG63/entry#F4IG61-1", "sequence": { "sequence": "MASTAAEQDERKIVSVASNASQDIKTAAAASRISSQNGASPSPSLNSKDFIVSAAANIASQPLQNYDSNVWGVLTAISSNARKRRQGINILLTSDEHCLGRLPCHASYQVESNAISGNHCKVFRKPVTGGDGDDVTVFMVDTSTNGTFLNWERLTKNGPEVRVQHGDIISLAVPPEHEKAFAFVYREVLGNNPALSCMNRKRKAEDTTCEIKRQKGIGISGPNGPISLDDFKSLQRSNTELRKQLEAQVLTIDTLRNESRSIVEHHESEIKQIKESTAKSFHNELIELRDQLDTKQKELAQVNKLSAEQKNSIDELGERVSASLQTLSEANEVIQSQKASIAELKTGLDEERNQRREERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEVINKMKESEKEKSMQVETLMSKLEDTRQRLVCSENRNRLLEAQVSEEQLAFADAQKKLEELDLQVKRLQKDLDSEKQAAREEAWAKVSALELEISAAVRDLDVERQRHRGARERIMLRETQMRAFYSTTEEISALFAKQQEQLKTMQRTLEDEDNCDNTSLDIDLNPINRSPNRANTQGDKRATSHLNFAARASSSTSGQRSTRNEVVDTSCEDADATQKHDCEIMSQEGQNTQEAEYPSSDKVAKGGFGSDIEGIGTAPTSGTDPVGTEQVNETQSPGNDYERNDHLRKSIILAGDTMQIDCETQVHESVQIEGAVLLLRNPNDRRDTQDIEGVGTIGTSDLLASEVAGSWANSTNPSVHGENETERSREDEESQTQKIKEVTIVQDSAGQIGESQTKPTSPGVLVTNKDDAERGVINEPVGITDQGKIKHGTRSDSETESCSDSDDDHEKEKHNPVSDSDTEGSDMNDDKGSLSSDPDTERSHEVDGDQKKQVDTMDEDDKAT", "length": 902, "header": "tr|F4IG61-1|F4IG61_ARATH Computationally mapped isoform of SMAD/FHA domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IG63-1" }, "locus": { "chromosome": "2", "start_pos": 18736803, "end_pos": 18741916, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G45460.2", "url": "https://www.ensemblgenomes.org/id/AT2G45460.2" }, { "database": "Ensembl Peptide", "id": "AT2G45460.2", "url": "https://www.ensemblgenomes.org/id/AT2G45460.2" } ] } }, { "isoform_ac": "F4IG62-1", "url": "https://www.uniprot.org/uniprotkb/F4IG63/entry#F4IG62-1", "sequence": { "sequence": "MASTAAEQDERKIVSVASNASQDIKTAAAASRISSQNGASPSPSLNSKDFIVSAAANIASQPLQNYDSNVWGVLTAISSNARKRRQGINILLTSDEHCLGRLPCHASYQVESNAISGNHCKVFRKPVTGGDGDDVTVFMVDTSTNGTFLNWERLTKNGPEVRVQHGDIISLAVPPEHEKAFAFVYREVLGNNPALSCMNRKRKAEDTTCEIKRQKGIGISGPNGPISLDDFKSLQRSNTELRKQLEAQVLTIDTLRNESRSIVEHHESDYLSISTEISLHLQEIKQIKESTAKSFHNELIELRDQLDTKQKELAQVNKLSAEQKNSIDELGERVSASLQTLSEANEVIQSQKASIAELKTGLDEERNQRREERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEVINKMKESEKEKSMQVETLMSKLEDTRQRLVCSENRNRLLEAQVSEEQLAFADAQKKLEELDLQVKRLQKDLDSEKAAREEAWAKVSALELEISAAVRDLDVERQRHRGARERIMLRETQMRAFYSTTEEISALFAKQQEQLKTMQRTLEDEDNCDNTSLDIDLNPINRSPNRANTQGDKRATSHLNFAARASSSTSGQRSTRNEVVDTSCEDADATQKHDCEIMSQEGQNTQEAEYPSSDKVAKGGFGSDIEGIGTAPTSGTDPVGTEQVNETQSPGNDYERNDHLRKSIILAGDTMQIDCETQVHESVQIEGAVLLLRNPNDRRDTQDIEGVGTIGTSDLLASEVAGSWANSTNPSVHGENETERSREDEESQTQKIKEVTIVQDSAGQIGESQTKPTSPGVLVTNKDDAERGVINEPVGITDQGKIKHGTRSDSETESCSDSDDDHEKEKHNPVSDSDTEGSDMNDDKGSLSSDPDTERSHEVDGDQKKQVDTMDEDDKAT", "length": 915, "header": "tr|F4IG62-1|F4IG62_ARATH Computationally mapped isoform of SMAD/FHA domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IG63-1" }, "locus": { "chromosome": "2", "start_pos": 18736839, "end_pos": 18741690, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G45460.1", "url": "https://www.ensemblgenomes.org/id/AT2G45460.1" }, { "database": "Ensembl Peptide", "id": "AT2G45460.1", "url": "https://www.ensemblgenomes.org/id/AT2G45460.1" } ] } }, { "isoform_ac": "F4IG63-1", "url": "https://www.uniprot.org/uniprotkb/F4IG63/entry#F4IG63-1", "sequence": { "sequence": "MASTAAEQDERKIVSVASNASQDIKTAAAASRISSQNGASPSPSLNSKDFIVSAAANIASQPLQNYDSNVWGVLTAISSNARKRRQGINILLTSDEHCLGRLPCHASYQVESNAISGNHCKVFRKPVTGGDGDDVTVFMVDTSTNGTFLNWERLTKNGPEVRVQHGDIISLAVPPEHEKAFAFVYREVLGNNPALSCMNRKRKAEDTTCEIKRQKGIGISGPNGPISLDDFKSLQRSNTELRKQLEAQVLTIDTLRNESRSIVEHHESDYLSISTEISLHLQEIKQIKESTAKSFHNELIELRDQLDTKQKELAQVNKLSAEQKNSIDELGERVSASLQTLSEANEVIQSQKASIAELKTGLDEERNQRREERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEVINKMKESEKEKSMQVETLMSKLEDTRQRLVCSENRNRLLEAQVSEEQLAFADAQKKLEELDLQVKRLQKDLDSEKQAAREEAWAKVSALELEISAAVRDLDVERQRHRGARERIMLRETQMRAFYSTTEEISALFAKQQEQLKTMQRTLEDEDNCDNTSLDIDLNPINRSPNRANTQGDKRATSHLNFAARASSSTSGQRSTRNEVVDTSCEDADATQKHDCEIMSQEGQNTQEAEYPSSDKVAKGGFGSDIEGIGTAPTSGTDPVGTEQVNETQSPGNDYERNDHLRKSIILAGDTMQIDCETQVHESVQIEGAVLLLRNPNDRRDTQDIEGVGTIGTSDLLASEVAGSWANSTNPSVHGENETERSREDEESQTQKIKEVTIVQDSAGQIGESQTKPTSPGVLVTNKDDAERGVINEPVGITDQGKIKHGTRSDSETESCSDSDDDHEKEKHNPVSDSDTEGSDMNDDKGSLSSDPDTERSHEVDGDQKKQVDTMDEDDKAT", "length": 916, "header": "tr|F4IG63-1|F4IG63_ARATH Isoform 1 of SMAD/FHA domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IG63-1" }, "locus": { "chromosome": "2", "start_pos": 18736839, "end_pos": 18741841, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G45460.3", "url": "https://www.ensemblgenomes.org/id/AT2G45460.3" }, { "database": "Ensembl Peptide", "id": "AT2G45460.3", "url": "https://www.ensemblgenomes.org/id/AT2G45460.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 672, "start_aa": "Thr", "end_pos": 672, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr672", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A178VPL7", "url": "https://www.uniprot.org/uniprotkb/A0A178VPL7" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A178VPL7", "url": "https://www.uniprot.org/uniprotkb/A0A178VPL7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G45460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G45460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IG63", "url": "https://www.uniprot.org/uniprotkb/F4IG63" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 569, "end_pos": 571, "annotation": "n_glycosylation_sequon" }, { "start_pos": 580, "end_pos": 582, "annotation": "n_glycosylation_sequon" }, { "start_pos": 684, "end_pos": 686, "annotation": "n_glycosylation_sequon" }, { "start_pos": 765, "end_pos": 767, "annotation": "n_glycosylation_sequon" }, { "start_pos": 775, "end_pos": 777, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IG63-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 916, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IG63-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IG63" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IG63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IG63" }, { "id": "PS50006", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50006" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FHA", "eco_id": "ECO_0000259", "start_pos": 97, "end_pos": 154, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 672 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 19, "end_pos": 21 }, { "start_pos": 257, "end_pos": 259 }, { "start_pos": 569, "end_pos": 571 }, { "start_pos": 580, "end_pos": 582 }, { "start_pos": 684, "end_pos": 686 }, { "start_pos": 765, "end_pos": 767 }, { "start_pos": 775, "end_pos": 777 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": 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"phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IDH6-1", "uniprot_ac": "F4IDH6", "uniprot_id": "F4IDH6_ARATH", "mass": { "chemical_mass": 63812.0, "monoisotopic_mass": 63812.0 }, "refseq": { "ac": "NP_178024", "name": "Chaperone DnaJ-domain superfamily protein", "summary": "", "url": 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"AT1G79030.1", "url": "https://www.ensemblgenomes.org/id/AT1G79030.1" }, { "database": "Ensembl Peptide", "id": "AT1G79030.1", "url": "https://www.ensemblgenomes.org/id/AT1G79030.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A178W1U3", "url": "https://www.uniprot.org/uniprotkb/A0A178W1U3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A178W1U3", "url": "https://www.uniprot.org/uniprotkb/A0A178W1U3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G79030", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G79030", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 499, "end_pos": 501, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IDH6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 561, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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OX=3702 GN= PE=4 SV=1 CANONICAL=F4J0R7-1" }, "locus": { "chromosome": "3", "start_pos": 21013714, "end_pos": 21015081, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G56730.4", "url": "https://www.ensemblgenomes.org/id/AT3G56730.4" }, { "database": "Ensembl Peptide", "id": "AT3G56730.4", "url": "https://www.ensemblgenomes.org/id/AT3G56730.4" } ] } }, { "isoform_ac": "A0A1I9LLH3-1", "url": "https://www.uniprot.org/uniprotkb/F4J0R7/entry#A0A1I9LLH3-1", "sequence": { "sequence": "MDNGYRGDVSTTPYTDLTKSNGEFNGIPVRHLSAGDRDARLEVYMIDLYSCVVKEDGPLNLMLFVGDISSRSKDFFRVFRLLQSSSSDSSVPLSLTQDGICKALTFGEEVIIRECGERRKVPNSD", "length": 125, "header": "tr|A0A1I9LLH3-1|F4J0R7_ARATH Computationally mapped isoform of Endonuclease or glycosyl hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J0R7-1" }, "locus": { "chromosome": "3", "start_pos": 21013714, "end_pos": 21015081, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G56730.5", "url": "https://www.ensemblgenomes.org/id/AT3G56730.5" }, { "database": "Ensembl Peptide", "id": "AT3G56730.5", "url": "https://www.ensemblgenomes.org/id/AT3G56730.5" } ] } }, { "isoform_ac": "F4J0R7-1", "url": "https://www.uniprot.org/uniprotkb/F4J0R7/entry#F4J0R7-1", "sequence": { "sequence": "MYKSNFAVHSRSGFAGGKTFVLWDVEVCPIPDGLGPHDVFSNIKRVLMDNGYRGDVSTTPYTDLTKSNGEFNGIPVRHLSAGDRDARLEVYMIDLYSCVVKEDGPLNLMLFVGDISSRSKDFFRVFRLLQSSSSDSSVPLSLTQDGICKALTFGEEVIIRECGERRKVPNSD", "length": 172, "header": "tr|F4J0R7-1|F4J0R7_ARATH Isoform 1 of Endonuclease or glycosyl hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J0R7-1" }, "locus": { "chromosome": "3", "start_pos": 21013703, "end_pos": 21015078, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G56730.3", "url": "https://www.ensemblgenomes.org/id/AT3G56730.3" }, { "database": "Ensembl Peptide", "id": "AT3G56730.3", "url": "https://www.ensemblgenomes.org/id/AT3G56730.3" } ] } }, { "isoform_ac": "F4J0R8-1", "url": "https://www.uniprot.org/uniprotkb/F4J0R7/entry#F4J0R8-1", "sequence": { "sequence": "MNSAIEKIPCGKTFVLWDVEVCPIPDGLGPHDVFSNIKRVLMDNGYRGDVSTTPYTDLTKSNGEFNGIPVRHLSAGDRDARLEVYMIDLYSCVVKEDGPLNLMLFVGDISSRSKDFFRVFRLLQSSSSDSSVPLSLTQDGICKALTFGEEVIIRECGERRKVPNSD", "length": 166, "header": "tr|F4J0R8-1|F4J0R8_ARATH Computationally mapped isoform of Endonuclease or glycosyl hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J0R7-1" }, "locus": { "chromosome": "3", "start_pos": 21014074, "end_pos": 21015157, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G56730.1", "url": "https://www.ensemblgenomes.org/id/AT3G56730.1" }, { "database": "Ensembl Peptide", "id": "AT3G56730.1", "url": "https://www.ensemblgenomes.org/id/AT3G56730.1" } ] } }, { "isoform_ac": "Q9LET4-1", "url": "https://www.uniprot.org/uniprotkb/F4J0R7/entry#Q9LET4-1", "sequence": { "sequence": "MRFPFCTGGKTFVLWDVEVCPIPDGLGPHDVFSNIKRVLMDNGYRGDVSTTPYTDLTKSNGEFNGIPVRHLSAGDRDARLEVYMIDLYSCVVKEDGPLNLMLFVGDISSRSKDFFRVFRLLQSSSSDSSVPLSLTQDGICKALTFGEEVIIRECGERRKVPNSD", "length": 164, "header": "tr|Q9LET4-1|Q9LET4_ARATH Computationally mapped isoform of Endonuclease or glycosyl hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J0R7-1" }, "locus": { "chromosome": "3", "start_pos": 21014074, "end_pos": 21015157, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G56730.6", "url": "https://www.ensemblgenomes.org/id/AT3G56730.6" }, { "database": "Ensembl Peptide", "id": "AT3G56730.6", "url": "https://www.ensemblgenomes.org/id/AT3G56730.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF154", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF154", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189388", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189388", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G27510", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G27510", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LLJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LLJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LLJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IWJ8", "url": "https://www.uniprot.org/uniprotkb/F4IWJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IWJ8-1", "url": "https://www.uniprot.org/uniprotkb/F4IWJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKLISFVCDACGTKGDRSPYICVQCDFMIFHQKCARLPQVINVNHHDHRVSFKYPLGPGEWRCGVCWEEIDWSYGAYSCSVCPRYAIHSLCATRRDVWDGKELNRVPEKVEYIEPFKRNDDNTITHFAHEHNLTSLGQGGEESSLCGGCVCPIGSCTFYKCLESKCSFILHETCANLRKKKRHFLSPQPLTLCLESYLLPYSCEACHQVFFHGFSYSTYLRKSLDIFCSSITVPLIHGSHDHHLLYLKQRFGDVKTCQSCGMDETEVVIGCMKCDYFLDFRCATLPLTVTLPRYDDHPLTLCYGEEKASGKYWCDICERETNPKTWFYTCKDCGITLHVFCVVGDIIYAKEGKHIIYDDNSLLSNNSSSRPLCHNCHCRCPGSFILRAEKWGYSEKRREVKFFCSYYCFIISGYAEREVSKIKLRSPPWTIGNQIQLME", "length": 440, "header": "tr|F4IWJ8-1|F4IWJ8_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IWJ8-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LLJ1-1", "url": "https://www.uniprot.org/uniprotkb/F4IWJ8/entry#A0A1I9LLJ1-1", "sequence": { "sequence": "MPKLISFVCDACGTKGDRSPYICVQCDFMIFHQKCARLPQVINVNHHDHRVSFKYPLGPGEWRCGVCWEEIDWSYGAYSCSVCPRYAIHSLCATRRDVWDGKELNRVPEKVEYIEPFKRNDDNTITHFAHEHNLTSLGQGGEESSLCGGCVCPIGSCTFYKCLESKCSFILHETCANLRKKKRHFLSPQPLTLCLESYLLPYSCEACHQVFFHGFSYSTYLRKSLDIFCSSITVPLIHGSHDHHLLYLKQRFGDVKTCQSCGMDETEVVIGTMIIHSLYVMVRKRQAENIGVIFAKEKQIQRLGSTLVKIAGSLYMSFA", "length": 319, "header": "tr|A0A1I9LLJ1-1|F4IWJ8_ARATH Computationally mapped isoform of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IWJ8-1" }, "locus": { "chromosome": "3", "start_pos": 10188152, "end_pos": 10190348, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G27510.2", "url": "https://www.ensemblgenomes.org/id/AT3G27510.2" }, { "database": "Ensembl Peptide", "id": "AT3G27510.2", "url": "https://www.ensemblgenomes.org/id/AT3G27510.2" } ] } }, { "isoform_ac": "F4IWJ8-1", "url": "https://www.uniprot.org/uniprotkb/F4IWJ8/entry#F4IWJ8-1", "sequence": { "sequence": "MPKLISFVCDACGTKGDRSPYICVQCDFMIFHQKCARLPQVINVNHHDHRVSFKYPLGPGEWRCGVCWEEIDWSYGAYSCSVCPRYAIHSLCATRRDVWDGKELNRVPEKVEYIEPFKRNDDNTITHFAHEHNLTSLGQGGEESSLCGGCVCPIGSCTFYKCLESKCSFILHETCANLRKKKRHFLSPQPLTLCLESYLLPYSCEACHQVFFHGFSYSTYLRKSLDIFCSSITVPLIHGSHDHHLLYLKQRFGDVKTCQSCGMDETEVVIGCMKCDYFLDFRCATLPLTVTLPRYDDHPLTLCYGEEKASGKYWCDICERETNPKTWFYTCKDCGITLHVFCVVGDIIYAKEGKHIIYDDNSLLSNNSSSRPLCHNCHCRCPGSFILRAEKWGYSEKRREVKFFCSYYCFIISGYAEREVSKIKLRSPPWTIGNQIQLME", "length": 440, "header": "tr|F4IWJ8-1|F4IWJ8_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IWJ8-1" }, "locus": { "chromosome": "3", "start_pos": 10188134, "end_pos": 10190344, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G27510.1", "url": "https://www.ensemblgenomes.org/id/AT3G27510.1" }, { "database": "Ensembl Peptide", "id": "AT3G27510.1", "url": "https://www.ensemblgenomes.org/id/AT3G27510.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LLJ1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LLJ1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G27510", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G27510", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IWJ8", "url": "https://www.uniprot.org/uniprotkb/F4IWJ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 367, "end_pos": 369, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IWJ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 440, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IWJ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IWJ8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IWJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IWJ8" }, { "id": "PF03107", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DC1", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 36, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4IWJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IWJ8" }, { "id": "PF22926", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DC1-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 363, "end_pos": 410, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 367, "end_pos": 369 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IXX4-1", "uniprot_ac": "F4IXX4", "uniprot_id": "F4IXX4_ARATH", "mass": { "chemical_mass": 65651.0, "monoisotopic_mass": 65651.0 }, "refseq": { "ac": "NP_001325756", "name": "Transcription factor IIIC, subunit 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325756" }, "gene_names": [], "protein_names": [ { "name": "Transcription factor IIIC, subunit 5", "type": "synonym", "evidence": [ { "id": "NP_001325756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325756" }, { "id": "F4IXX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IXX4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IXX4", "url": "https://www.uniprot.org/uniprotkb/F4IXX4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IXX4", "locus": {} } ], "crossref": [ { "id": "AT3G49410", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G49410", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824103", "url": "https://www.ncbi.nlm.nih.gov/gene/824103", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040454", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040454", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G49410", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G49410", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PPEYFVR", "url": "https://omabrowser.org/oma/group/PPEYFVR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13230", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13230", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13230:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13230:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17682", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17682", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001325756", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001325756", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G49410", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G49410", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LM72", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LM72-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IXX4", "url": "https://www.uniprot.org/uniprotkb/F4IXX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IXX4-1", "url": "https://www.uniprot.org/uniprotkb/F4IXX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGIIEEGTISGTLPSKEAFVVHFPGYPSSISRAIETLGGIQGITQARESISNKLELRFRPEDPYAHPALGEQRPCSGFLLRISKQDIKKPESQSVLDTSRDVCLEEASPVLCADIVARLSESFHFDGMADYQHVIPIHADIAQQKKRKWMDVDPLTGKSDLMGLADEDVMMLLPQFFAPKDIPDNVALKPPATSGPKKKDDAATQNFYEIDVGPVFAIDFSVKEIPKKLKWEDFVSRSSNHWQWQVAVSALFEERPIWTRDSVVQRLLDKGLKCTHHMLNRFLLRAAYYFSSGPFLRFWIKRGYDPRNDPESRVYQRMEFRVPPELRGYCDANATNNSKPSWNDICAFKLFPFKCQTFLQLFELDDEYIQREIRKPPKQTTCSHKSGWFSEAMLDTLRLRVAVRFVSVFPETGFEDVFKSIQEEFERSEKVQIQKETLKPSLVKHREATKGSEDMETFKSVNENVDANVNEDGEDENLDDEDEDEEEEEELDMAAGDNEISLDSHGYLDTENSSRTYLQGLFDSFPSSEPNLYGDFAVDDGSDGEFQIYEEESEGLYSIDDDHNDDDEEEDDDD", "length": 574, "header": "tr|F4IXX4-1|F4IXX4_ARATH Isoform 1 of Transcription factor IIIC, subunit 5 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXX4-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LM72-1", "url": "https://www.uniprot.org/uniprotkb/F4IXX4/entry#A0A1I9LM72-1", "sequence": { "sequence": "MADYQHVIPIHADIAQQKKRKWMDVDPLTGKSDLMGLADEDVMMLLPQFFAPKDIPDNVALKPPATSGPKKKDDAATQNFYEIDVGPVFAIDFSVKEIPKKLKWEDFVSRSSNHWQWQVAVSALFEERPIWTRDSVVQRLLDKGLKCTHHMLNRFLLRAAYYFSSGPFLRFWIKRGYDPRNDPESRVYQRMEFRVPPELRGYCDANATNNSKPSWNDICAFKLFPFKCQTFLQLFELDDEYIQREIRKPPKQTTCSHKSGWFSEAMLDTLRLRVAVRFVSVFPETGFEDVFKSIQEEFERSEKVQIQKETLKPSLVKHREATKGSEDMETFKSVNENVDANVNEDGEDENLDDEDEDEEEEEELDMAAGDNEISLDSHGYLDTENSSRTYLQGLFDSFPSSEPNLYGDFAVDDGSDGEFQIYEEESEGLYSIDDDHNDDDEEEDDDD", "length": 447, "header": "tr|A0A1I9LM72-1|F4IXX4_ARATH Computationally mapped isoform of Transcription factor IIIC, subunit 5 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXX4-1" }, "locus": { "chromosome": "3", "start_pos": 18325304, "end_pos": 18329191, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G49410.4", "url": "https://www.ensemblgenomes.org/id/AT3G49410.4" }, { "database": "Ensembl Peptide", "id": "AT3G49410.4", "url": "https://www.ensemblgenomes.org/id/AT3G49410.4" } ] } }, { "isoform_ac": "F4IXX4-1", "url": "https://www.uniprot.org/uniprotkb/F4IXX4/entry#F4IXX4-1", "sequence": { "sequence": "MGIIEEGTISGTLPSKEAFVVHFPGYPSSISRAIETLGGIQGITQARESISNKLELRFRPEDPYAHPALGEQRPCSGFLLRISKQDIKKPESQSVLDTSRDVCLEEASPVLCADIVARLSESFHFDGMADYQHVIPIHADIAQQKKRKWMDVDPLTGKSDLMGLADEDVMMLLPQFFAPKDIPDNVALKPPATSGPKKKDDAATQNFYEIDVGPVFAIDFSVKEIPKKLKWEDFVSRSSNHWQWQVAVSALFEERPIWTRDSVVQRLLDKGLKCTHHMLNRFLLRAAYYFSSGPFLRFWIKRGYDPRNDPESRVYQRMEFRVPPELRGYCDANATNNSKPSWNDICAFKLFPFKCQTFLQLFELDDEYIQREIRKPPKQTTCSHKSGWFSEAMLDTLRLRVAVRFVSVFPETGFEDVFKSIQEEFERSEKVQIQKETLKPSLVKHREATKGSEDMETFKSVNENVDANVNEDGEDENLDDEDEDEEEEEELDMAAGDNEISLDSHGYLDTENSSRTYLQGLFDSFPSSEPNLYGDFAVDDGSDGEFQIYEEESEGLYSIDDDHNDDDEEEDDDD", "length": 574, "header": "tr|F4IXX4-1|F4IXX4_ARATH Isoform 1 of Transcription factor IIIC, subunit 5 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXX4-1" }, "locus": { "chromosome": "3", "start_pos": 18324713, "end_pos": 18329350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G49410.1", "url": "https://www.ensemblgenomes.org/id/AT3G49410.1" }, { "database": "Ensembl Peptide", "id": "AT3G49410.1", "url": "https://www.ensemblgenomes.org/id/AT3G49410.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LM72", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM72" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LM72", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM72" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G49410", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G49410", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "transcription factor TFIIIC complex", "id": "GO:0000127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000127", "evidence": [ { "database": "UniProtKB", "id": "F4IXX4", "url": "https://www.uniprot.org/uniprotkb/F4IXX4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IXX4", "url": "https://www.uniprot.org/uniprotkb/F4IXX4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "transcription initiation at RNA polymerase III promoter", "id": "GO:0006384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006384", "evidence": [ { "database": "UniProtKB", "id": "F4IXX4", "url": "https://www.uniprot.org/uniprotkb/F4IXX4" } ], "pmid": "" }, { "name": "5S class rRNA transcription by RNA polymerase III", "id": "GO:0042791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042791", "evidence": [ { "database": "UniProtKB", "id": "F4IXX4", "url": "https://www.uniprot.org/uniprotkb/F4IXX4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F4IXX4", "url": "https://www.uniprot.org/uniprotkb/F4IXX4" } ], "pmid": "" }, { "name": "RNA polymerase III general transcription initiation factor activity", "id": "GO:0000995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000995", "evidence": [ { "database": "UniProtKB", "id": "F4IXX4", "url": "https://www.uniprot.org/uniprotkb/F4IXX4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 336, "end_pos": 338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 512, "end_pos": 514, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IXX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IXX4" }, { "id": "PF09734", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09734" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transcription factor IIIC subunit 5 HTH", "eco_id": "ECO_0000259", "start_pos": 171, "end_pos": 321, "start_aa": "Met", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4IXX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IXX4" }, { "id": "PF17682", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17682" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transcription factor IIIC subunit Tfc1/Sfc1 triple barrel", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 133, "start_aa": "Val", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 333, "end_pos": 335 }, { "start_pos": 336, "end_pos": 338 }, { "start_pos": 512, "end_pos": 514 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IZC0-1", "uniprot_ac": "F4IZC0", "uniprot_id": "F4IZC0_ARATH", "mass": { "chemical_mass": 58426.0, "monoisotopic_mass": 58426.0 }, "refseq": { "ac": "NP_190588", "name": "transmembrane protein, putative (DUF247)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190588" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein, putative (DUF247)", "type": "synonym", "evidence": [ { "id": "F4IZC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IZC0/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein, putative (DUF247)", "type": "synonym", "evidence": [ { "id": "NP_190588", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190588" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IZC0", "url": "https://www.uniprot.org/uniprotkb/F4IZC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IZC0", "locus": {} } ], "crossref": [ { "id": "F4IZC0", "url": "https://alphafold.ebi.ac.uk/entry/F4IZC0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G50190", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G50190", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824181", "url": "https://www.ncbi.nlm.nih.gov/gene/824181", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4IZC0", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4IZC0*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR004158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G50190", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G50190", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "THRTEWR", "url": "https://omabrowser.org/oma/group/THRTEWR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31170", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31170", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31170:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31170:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190588", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190588", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G50190", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G50190", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LM82", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LM82-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM82-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LM83", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LM83-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IZC0", "url": "https://www.uniprot.org/uniprotkb/F4IZC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IZC0-1", "url": "https://www.uniprot.org/uniprotkb/F4IZC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVPSKRRSPPPPPPPPQLPFGPKLPFPHIIIRRKARRNYQLRPMLTWYFLTFMMRQKLQTRNQQPEETREEWVIWIKDKMEQVMRDAATTSWDKLCIYRVPLSFQKSDKNSYFPHTVSLGPYHHGDEHLRPMDYHKWRAVNMVMKRTKQGIEMYIDAMKELEERARACYEGPIGLSSNKFTQMLVLDGCFVLDLFRGAYEGFSKLGYDRNDPVFAMRGSMHSIRRDMLMLENQLPLMPTYMPSTKIENSQENNNKFFHPIADKDKEELHCLDVFRRSVLQPSLKPEPRLSRRWSWKPVVADKRQQKLLHCVTELREAGIKFKRRKSDRLWDIQFKNGCLEIPKLLIHDGTKSLLSNLIAFEQCHIDSTKQITSYIIFVENLINSNEDVRYLQYCGIIEHWLESDSEVVDLFHKLCQDVVFDPIDSYLYPLCLGVDRFYSRKWSLFSAVILHKYQLNLRSPWAYFSFFGAVILLLLTFCESFFTVYAYFEPNT", "length": 493, "header": "tr|F4IZC0-1|F4IZC0_ARATH Isoform 1 of Transmembrane protein, putative (DUF247) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZC0-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LM82-1", "url": "https://www.uniprot.org/uniprotkb/F4IZC0/entry#A0A1I9LM82-1", "sequence": { "sequence": "MAVPSKRRSPPPPPPPPQLPFGPKLPFPHIIIRRKARRNYQLRPMLTWYFLTFMMRQKLQTRNQQPEETREEWVIWIKDKMEQVMRDAATTSWDKLCIYRVPLSFQKSDKNSYFPHTVSLGPYHHGDEHLRPMDYHKWRAVNMVMKRTKQGIEMYIDAMKELEERARACYEGPIGLSSNKFTQMLVLDGCFVLDLFRGAYEGFSKLGYDRNDPVFAMRGSMHSIRRDMLMLENQLPLMPTYMPSTKIENSQENNNKFFHPIADKDKEELHCLDVFRRSVLQPSLKPEPRLSRRWSWKPVVADKRQQKLLHCVTELREAGIKFKRRKSDRLWDIQFKNGCLEIPKLLIHDGKFTFSFLLVLNHILLILLSPKNQT", "length": 374, "header": "tr|A0A1I9LM82-1|F4IZC0_ARATH Computationally mapped isoform of Transmembrane protein, putative (DUF247) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZC0-1" }, "locus": { "chromosome": "3", "start_pos": 18609069, "end_pos": 18611262, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G50190.3", "url": "https://www.ensemblgenomes.org/id/AT3G50190.3" }, { "database": "Ensembl Peptide", "id": "AT3G50190.3", "url": "https://www.ensemblgenomes.org/id/AT3G50190.3" } ] } }, { "isoform_ac": "A0A1I9LM83-1", "url": "https://www.uniprot.org/uniprotkb/F4IZC0/entry#A0A1I9LM83-1", "sequence": { "sequence": "MAVPSKRRSPPPPPPPPQLPFGPKLPFPHIIIRRKARRNYQLRPMLTWYFLTFMMRQKLQTRNQQPEETREEWVIWIKDKMEQVMRDAATTSWDKLCIYRVPLSFQKSDKNSYFPHTVSLGPYHHGDEHLRPMDYHKWRAVNMVMKRTKQGIEMYIDAMKELEERARACYEGPIGLSSNKFTQMLVLDGCFVLDLFRGAYEGFSKLGYDRNDPVFAMRGSMHSIRRDMLMLENQLPLMPTYMPSTKIENSQENNNKFFHPIADKDKEELHCLDVFRRSVLQPSLKPEPRLSRRWSWKPVVADKRQQKLLHCVTELREAGIKFKRRKSDRLWDIQFKNGCLEIPKLLIHDD", "length": 350, "header": "tr|A0A1I9LM83-1|F4IZC0_ARATH Computationally mapped isoform of Transmembrane protein, putative (DUF247) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZC0-1" }, "locus": { "chromosome": "3", "start_pos": 18608113, "end_pos": 18611262, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G50190.2", "url": "https://www.ensemblgenomes.org/id/AT3G50190.2" }, { "database": "Ensembl Peptide", "id": "AT3G50190.2", "url": "https://www.ensemblgenomes.org/id/AT3G50190.2" } ] } }, { "isoform_ac": "F4IZC0-1", "url": "https://www.uniprot.org/uniprotkb/F4IZC0/entry#F4IZC0-1", "sequence": { "sequence": "MAVPSKRRSPPPPPPPPQLPFGPKLPFPHIIIRRKARRNYQLRPMLTWYFLTFMMRQKLQTRNQQPEETREEWVIWIKDKMEQVMRDAATTSWDKLCIYRVPLSFQKSDKNSYFPHTVSLGPYHHGDEHLRPMDYHKWRAVNMVMKRTKQGIEMYIDAMKELEERARACYEGPIGLSSNKFTQMLVLDGCFVLDLFRGAYEGFSKLGYDRNDPVFAMRGSMHSIRRDMLMLENQLPLMPTYMPSTKIENSQENNNKFFHPIADKDKEELHCLDVFRRSVLQPSLKPEPRLSRRWSWKPVVADKRQQKLLHCVTELREAGIKFKRRKSDRLWDIQFKNGCLEIPKLLIHDGTKSLLSNLIAFEQCHIDSTKQITSYIIFVENLINSNEDVRYLQYCGIIEHWLESDSEVVDLFHKLCQDVVFDPIDSYLYPLCLGVDRFYSRKWSLFSAVILHKYQLNLRSPWAYFSFFGAVILLLLTFCESFFTVYAYFEPNT", "length": 493, "header": "tr|F4IZC0-1|F4IZC0_ARATH Isoform 1 of Transmembrane protein, putative (DUF247) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZC0-1" }, "locus": { "chromosome": "3", "start_pos": 18609069, "end_pos": 18611262, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G50190.1", "url": "https://www.ensemblgenomes.org/id/AT3G50190.1" }, { "database": "Ensembl Peptide", "id": "AT3G50190.1", "url": "https://www.ensemblgenomes.org/id/AT3G50190.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LM82", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM82" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LM82", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LM82" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G50190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G50190", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IZC0", "url": "https://www.uniprot.org/uniprotkb/F4IZC0" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4IZC0", "url": "https://www.uniprot.org/uniprotkb/F4IZC0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IZC0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 493, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IZC0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IZC0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IZB4-1", "uniprot_ac": "F4IZB4", "uniprot_id": "F4IZB4_ARATH", "mass": { "chemical_mass": 63595.0, "monoisotopic_mass": 63595.0 }, "refseq": { "ac": "NP_190583", "name": "transmembrane protein, putative (DUF247)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190583" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein, putative (DUF247)", "type": "synonym", "evidence": [ { "id": "F4IZB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IZB4/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein, putative (DUF247)", "type": "synonym", "evidence": [ { "id": "NP_190583", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190583" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IZB4", "url": "https://www.uniprot.org/uniprotkb/F4IZB4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IZB4", "locus": {} } ], "crossref": [ { "id": "F4IZB4", "url": "https://alphafold.ebi.ac.uk/entry/F4IZB4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G50140", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G50140", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824176", "url": "https://www.ncbi.nlm.nih.gov/gene/824176", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G50140", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G50140", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AWAKLCI", "url": "https://omabrowser.org/oma/group/AWAKLCI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31170", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31170", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31170:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31170:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190583", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190583", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G50140", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G50140", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LMA3", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LMA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LMA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LMA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IZB4", "url": "https://www.uniprot.org/uniprotkb/F4IZB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IZB4-1", "url": "https://www.uniprot.org/uniprotkb/F4IZB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATPSKRRPPPPPPPPPRLLVLPPLPPPPPPPPPQLPFGPKLPFPHIIIRRKARRNYQLRPMLTWYFLTFMMRQKLQTRNQQPEETREEWVIWIKDKMEQVMRDAATTSWDKICIYRVPLSLKKSDKNSYFPQAVSLGPYHHGDEHLRPMDYHKWRAVNMVMKRTKQGIEMYIDAMKELEERARACYEGPIGLSSNKFTQMLVLDGCFVLDLFRGAYEGFSKLGYDRNDPVFAMRGSMHSIRRDMLMLENQLPLFVLNRLLELQLGTQYQTGLVAQLAVRFFNPLMPTYMSSTKIENSQENNNKFFNPIADKEKEELHCLDVFRRSLLQPSLKPDPRLSRSRWSRKPLVADKRQQQLLHCVTELREAGIKFKRRKSDRFWDIQFKNGCLEIPKLLIHDGTKSLFSNLIAYEQCHIDSTNDITSYIIFMDNLIDSAEDIRYLHYYDIIEHWLGNDSEVADVFNRLCQEVAFDLENTYLSELSNKVDRYYNRKWNVLKATLKHKYFSNPWAYFSFFAAVILLLLTLFQSFFTSYPYFKPPS", "length": 539, "header": "tr|F4IZB4-1|F4IZB4_ARATH Isoform 1 of Transmembrane protein, putative (DUF247) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IZB4-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LMA3-1", "url": "https://www.uniprot.org/uniprotkb/F4IZB4/entry#A0A1I9LMA3-1", "sequence": { "sequence": "MATPSKRRPPPPPPPPPRLLVLPPLPPPPPPPPPQLPFGPKLPFPHIIIRRKARRNYQLRPMLTWYFLTFMMRQKLQTRNQQPEETREEWVIWIKDKMEQVMRDAATTSWDKICIYRVPLSLKKSDKNSYFPQAVSLGPYHHGDEHLRPMDYHKWRAVNMVMKRTKQGIEMYIDAMKELEERARACYEGPIGLSSNKFTQMLVLDGCFVLDLFRGAYEGFSKLGYDRNDPVFAMRGSMHSIRRDMLMLENQLPLFVLNRLLELQLGTQYQTGLVAQLAVRFFNPLMPTYMSSTKIENSQENNNKFFNPIADKEKEELHCLDVFRRSLLQPSLKPDPRLSRSRWSRKPLVADKRQQQLLHCVTELREAGIKFKRRKSDRFWDIQFKNGCLEIPKLLIHDGKFTLFSFYLFLRSFV", "length": 414, "header": "tr|A0A1I9LMA3-1|F4IZB4_ARATH Computationally mapped isoform of Transmembrane protein, putative (DUF247) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IZB4-1" }, "locus": { "chromosome": "3", "start_pos": 18592305, "end_pos": 18594715, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G50140.2", "url": "https://www.ensemblgenomes.org/id/AT3G50140.2" }, { "database": "Ensembl Peptide", "id": "AT3G50140.2", "url": "https://www.ensemblgenomes.org/id/AT3G50140.2" } ] } }, { "isoform_ac": "F4IZB4-1", "url": "https://www.uniprot.org/uniprotkb/F4IZB4/entry#F4IZB4-1", "sequence": { "sequence": "MATPSKRRPPPPPPPPPRLLVLPPLPPPPPPPPPQLPFGPKLPFPHIIIRRKARRNYQLRPMLTWYFLTFMMRQKLQTRNQQPEETREEWVIWIKDKMEQVMRDAATTSWDKICIYRVPLSLKKSDKNSYFPQAVSLGPYHHGDEHLRPMDYHKWRAVNMVMKRTKQGIEMYIDAMKELEERARACYEGPIGLSSNKFTQMLVLDGCFVLDLFRGAYEGFSKLGYDRNDPVFAMRGSMHSIRRDMLMLENQLPLFVLNRLLELQLGTQYQTGLVAQLAVRFFNPLMPTYMSSTKIENSQENNNKFFNPIADKEKEELHCLDVFRRSLLQPSLKPDPRLSRSRWSRKPLVADKRQQQLLHCVTELREAGIKFKRRKSDRFWDIQFKNGCLEIPKLLIHDGTKSLFSNLIAYEQCHIDSTNDITSYIIFMDNLIDSAEDIRYLHYYDIIEHWLGNDSEVADVFNRLCQEVAFDLENTYLSELSNKVDRYYNRKWNVLKATLKHKYFSNPWAYFSFFAAVILLLLTLFQSFFTSYPYFKPPS", "length": 539, "header": "tr|F4IZB4-1|F4IZB4_ARATH Isoform 1 of Transmembrane protein, putative (DUF247) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IZB4-1" }, "locus": { "chromosome": "3", "start_pos": 18592305, "end_pos": 18594715, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G50140.1", "url": "https://www.ensemblgenomes.org/id/AT3G50140.1" }, { "database": "Ensembl Peptide", "id": "AT3G50140.1", "url": "https://www.ensemblgenomes.org/id/AT3G50140.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3, "start_aa": "Thr", "end_pos": 3, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins 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}, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. 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"database": "Ensembl Transcript", "id": "AT3G16230.1", "url": "https://www.ensemblgenomes.org/id/AT3G16230.1" }, { "database": "Ensembl Peptide", "id": "AT3G16230.1", "url": "https://www.ensemblgenomes.org/id/AT3G16230.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, 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M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LN58", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LN58" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LN58", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LN58" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G16230", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G16230", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", 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"Protein Classification" ] }, { "id": "ath:AT3G44510", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G44510", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TQNMFPT", "url": "https://omabrowser.org/oma/group/TQNMFPT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45763", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45763", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45763:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45763:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12146", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12146", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190008", 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"MEEHLQGRIKLHDGRYLAYKERGVPKDDAKFTIVLVHGFGSSKDMNFNVSQELVNEIGIYFVLYDRAGYGESDPNPKRSLKSEAYDVQELADGLEIGSRFYLIGISMGSYTVWSCLKHIPQRLAGVAMVAPVVNFRWPSIPKSLMPKDYRREVAKWSVWIANYFPGLLQWLVTQNMFSTTSMLEKNPVYFNDQDIEVLKHIKGFPMLTKEKLRERGVFGTLRSDFLVAFGDWDFDPADLPDPSLSGPEKGSSSVHIWQGYEDKVMPFQLQRCLCRKLPWIRYHEVPKGGHLIVHYDGICDAILKSLLLGEDLPMYKPKAVITEPA", "length": 325, "header": "tr|F4J341-1|F4J341_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J341-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LND2-1", "url": "https://www.uniprot.org/uniprotkb/F4J341/entry#A0A1I9LND2-1", "sequence": { "sequence": "MEEHLQGRIKLHDGRYLAYKERGVPKDDAKFTIVLVHGFGSSKDMNFNVSQELVNEIGIYFVLYDRAGYGESDPNPKRSLKSEAYDVQELADGLEIGSRFYLIGISMGSYTVWSCLKHIPQRLAGVAMVAPVVNFRWPSIPKSLMPKDYRREVAKWSVWIANYFPGLLQWLVTQNMFSTTSMLEKNPVYFNDQDIEVLKHIKGFPMLTKVNITLYQEDYNPLELFPLYSFRTIILF", "length": 236, "header": "tr|A0A1I9LND2-1|F4J341_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J341-1" }, "locus": { "chromosome": "3", "start_pos": 16108100, "end_pos": 16111267, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G44510.3", "url": "https://www.ensemblgenomes.org/id/AT3G44510.3" }, { "database": "Ensembl Peptide", "id": "AT3G44510.3", "url": "https://www.ensemblgenomes.org/id/AT3G44510.3" } ] } }, { "isoform_ac": "F4J341-1", "url": "https://www.uniprot.org/uniprotkb/F4J341/entry#F4J341-1", "sequence": { "sequence": "MEEHLQGRIKLHDGRYLAYKERGVPKDDAKFTIVLVHGFGSSKDMNFNVSQELVNEIGIYFVLYDRAGYGESDPNPKRSLKSEAYDVQELADGLEIGSRFYLIGISMGSYTVWSCLKHIPQRLAGVAMVAPVVNFRWPSIPKSLMPKDYRREVAKWSVWIANYFPGLLQWLVTQNMFSTTSMLEKNPVYFNDQDIEVLKHIKGFPMLTKEKLRERGVFGTLRSDFLVAFGDWDFDPADLPDPSLSGPEKGSSSVHIWQGYEDKVMPFQLQRCLCRKLPWIRYHEVPKGGHLIVHYDGICDAILKSLLLGEDLPMYKPKAVITEPA", "length": 325, "header": "tr|F4J341-1|F4J341_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis 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H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LP49", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LP49" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar 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"authors" ] } ] }, { "uniprot_canonical_ac": "F4J287-1", "uniprot_ac": "F4J287", "uniprot_id": "F4J287_ARATH", "mass": { "chemical_mass": 57332.0, "monoisotopic_mass": 57332.0 }, "refseq": { "ac": "NP_191297", "name": "Glycosyltransferase family 61 protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191297" }, "gene_names": [], "protein_names": [ { "name": "Glycosyltransferase family 61 protein", "type": "synonym", "evidence": [ { "id": "NP_191297", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191297" }, { "id": "F4J287", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J287/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J287", "url": "https://www.uniprot.org/uniprotkb/F4J287" } ], "common_name": "Mouse-ear 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"header": "tr|F4J287-1|F4J287_ARATH Isoform 1 of Glycosyltransferase family 61 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J287-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LPD4-1", "url": "https://www.uniprot.org/uniprotkb/F4J287/entry#A0A1I9LPD4-1", "sequence": { "sequence": "MKGDVRTHSASSSVFLFTSLKNKTKITKKIKPYTRKWETSVMQTVQELNLVYRDEENNSLVVSSVNDICDVFYNVPAVFFSTGGYTGNVYHEFNDGIIPLFITSHHFNKKVVFVIVEYHSWWIMKYGDIVSQLSDYPPVDFNGDKRTHCFKEAIVGLKIHDELTVESSLMLGNKTILDFRNVLDQAYWPRIHGLIQEEELKAANKTEDGFKKPILVILSRNGSREILNESLLVELAEEIGFIVHVLRPDKTTELAKIYRCLNSSDVMIGVHGAAMTHLLFLKPKTVFIQIIPIGTEWAAETYYGKPAKKMRLKYIGYKIKPKESSLYDEYGIDDPIIRDPKSFTQKGWDYTKKIYLERQNVKLDLKRFRKPLSRAYDFSMKRIGLVYISHKPDVTN", "length": 396, "header": "tr|A0A1I9LPD4-1|F4J287_ARATH Computationally mapped isoform of Glycosyltransferase family 61 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J287-1" }, "locus": { "chromosome": "3", "start_pos": 21229794, "end_pos": 21231823, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G57380.3", "url": "https://www.ensemblgenomes.org/id/AT3G57380.3" }, { "database": "Ensembl Peptide", "id": "AT3G57380.3", "url": "https://www.ensemblgenomes.org/id/AT3G57380.3" } ] } }, { "isoform_ac": "F4J287-1", "url": "https://www.uniprot.org/uniprotkb/F4J287/entry#F4J287-1", "sequence": { "sequence": "MVQYKRLIKKGEKHRLSVEEGGSGASAVTVSGGVYSKTAKQKLLLTIFLSLLSCCYIFSFSSFSLLGAFSRESKGFGPYELFIAPLCSGTSNGTICCDRTGSRSDVCIMKGDVRTHSASSSVFLFTSLKNKTKITKKIKPYTRKWETSVMQTVQELNLVYRDEENNSLVVSSVNDICDVFYNVPAVFFSTGGYTGNVYHEFNDGIIPLFITSHHFNKKVVFVIVEYHSWWIMKYGDIVSQLSDYPPVDFNGDKRTHCFKEAIVGLKIHDELTVESSLMLGNKTILDFRNVLDQAYWPRIHGLIQEEELKAANKTEDGFKKPILVILSRNGSREILNESLLVELAEEIGFIVHVLRPDKTTELAKIYRCLNSSDVMIGVHGAAMTHLLFLKPKTVFIQIIPIGTEWAAETYYGKPAKKMRLKYIGYKIKPKESSLYDEYGIDDPIIRDPKSFTQKGWDYTKKIYLERQNVKLDLKRFRKPLSRAYDFSMKRIGLVYISHKPDVTN", "length": 504, "header": "tr|F4J287-1|F4J287_ARATH Isoform 1 of Glycosyltransferase family 61 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J287-1" }, "locus": { "chromosome": "3", "start_pos": 21229727, "end_pos": 21231833, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G57380.1", "url": "https://www.ensemblgenomes.org/id/AT3G57380.1" }, { "database": "Ensembl Peptide", "id": "AT3G57380.1", "url": "https://www.ensemblgenomes.org/id/AT3G57380.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 29, "start_aa": "Thr", "end_pos": 29, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr29", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LPD4", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPD4" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LPD4", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPD4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G57380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G57380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F4J287", "url": "https://www.uniprot.org/uniprotkb/F4J287" } ], "pmid": "" }, { "name": "extracellular 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"length": 1003, "header": "tr|A0A1I9LQB8-1|F4IXI9_ARATH Computationally mapped isoform of Dentin sialophosphoprotein-like protein OS=Arabidopsis thaliana OX=3702 GN=MXL8.16 PE=1 SV=1 CANONICAL=F4IXI9-1" }, "locus": { "chromosome": "3", "start_pos": 7482131, "end_pos": 7488935, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G21290.2", "url": "https://www.ensemblgenomes.org/id/AT3G21290.2" }, { "database": "Ensembl Peptide", "id": "AT3G21290.2", "url": "https://www.ensemblgenomes.org/id/AT3G21290.2" } ] } }, { "isoform_ac": "F4IXI9-1", "url": "https://www.uniprot.org/uniprotkb/F4IXI9/entry#F4IXI9-1", "sequence": { "sequence": 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"length": 1192, "header": "tr|F4IXI9-1|F4IXI9_ARATH Isoform 1 of Dentin sialophosphoprotein-like protein OS=Arabidopsis thaliana OX=3702 GN=MXL8.16 PE=1 SV=1 CANONICAL=F4IXI9-1" }, "locus": { "chromosome": "3", "start_pos": 7482106, "end_pos": 7488935, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G21290.1", "url": "https://www.ensemblgenomes.org/id/AT3G21290.1" }, { "database": "Ensembl Peptide", "id": "AT3G21290.1", "url": "https://www.ensemblgenomes.org/id/AT3G21290.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQB8", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQB8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQB8", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQB8" } ], 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superfamily protein OS=Arabidopsis thaliana OX=3702 GN=PWWP3 PE=1 SV=1 CANONICAL=F4IXJ0-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LQB9-1", "url": "https://www.uniprot.org/uniprotkb/F4IXJ0/entry#A0A1I9LQB9-1", "sequence": { "sequence": "MGSSDERNCKAIDASVGGLVWVRRRNGAWWPGRIMAHHEVPDGTIVSPKSGTPIKLLGRDDASVDWYNLEKSKRVKAFRCGEYDACIATAKATASTTGKKAVKYARREDAIAHALEIENAHLAKDHPPCIEKASTSGEVSRKGIEDSGDVAETEVALQSTMSLKKTKNGKASKVQPLSEKRRRTPNDSEDDGTQTNKRMRGLEDIGMGTGSKGKVQVGALLEDTQENGFKSDTNNINDSVSNGSLSNGSSRDCSPSMKRKRSPVVIANDYSKRKNRRRTLTKVLESTATVSIPGTCDKLVNSDCLSLPGVSESDNNSDSNEVFSENVSENIVEVINDKGKESEVSNISVLAKDDSSNGLFDVPLNGDEKYPSGISTVPFTSSSPRKALVSGPTRRFGQSSHDDVVKSEGSNGSPSTSPAATLFNGIKKSTSKWQLKGKRNSRQMSKKQVERRNAYAEEANNNALPHWSVSDQKPRSLFSVGTQAMGRNSELYDVKIEWLKCLKMDHVATL", "length": 510, "header": "tr|A0A1I9LQB9-1|F4IXJ0_ARATH Computationally mapped isoform of Tudor/PWWP/MBT superfamily protein OS=Arabidopsis thaliana OX=3702 GN=PWWP3 PE=1 SV=1 CANONICAL=F4IXJ0-1" }, "locus": { "chromosome": "3", "start_pos": 7489194, 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"AT3G21295.2", "url": "https://www.ensemblgenomes.org/id/AT3G21295.2" }, { "database": "Ensembl Peptide", "id": "AT3G21295.2", "url": "https://www.ensemblgenomes.org/id/AT3G21295.2" } ] } }, { "isoform_ac": "F4IXJ0-1", "url": "https://www.uniprot.org/uniprotkb/F4IXJ0/entry#F4IXJ0-1", "sequence": { "sequence": "MGSSDERNCKAIDASVGGLVWVRRRNGAWWPGRIMAHHEVPDGTIVSPKSGTPIKLLGRDDASVDWYNLEKSKRVKAFRCGEYDACIATAKATASTTGKKAVKYARREDAIAHALEIENAHLAKDHPPCIEKASTSGEVSRKGIEDSGDVAETEVALQSTMSLKKTKNGKASKVQPLSEKRRRTPNDSEDDGTQTNKRMRGLEDIGMGTGSKGKVQVGALLEDTQENGFKSDTNNINDSVSNGSLSNGSSRDCSPSMKRKRSPVVIANDYSKRKNRRRTLTKVLESTATVSIPGTCDKLVNSDCLSLPGVSESDNNSDSNEVFSENVSENIVEVINDKGKESEVSNISVLAKDDSSNGLFDVPLNGDEKYPSGISTVPFTSSSPRKALVSGPTRRFGQSSHDDVVKSEGSNGSPSTSPAATLFNGIKKSTSKWQLKGKRNSRQMSKKQVERRNAYAEEANNNALPHWSVSDQKPRSLFSVGTQAMGRNSELYDVKIEVKANYKPRNVPLISLRSKLNGEAIVGHPSVVEVLEDGSCGHIVSSHRIDDAKPKPSSKKKSKKKKPHFPPQASKSKKSSSLAIKTRCLSALSGQKLTLSSKKKVMIESTKERIVACIPLKVVFSRINEAVKGSARQVHRSLPSAGNTG", "length": 645, "header": "tr|F4IXJ0-1|F4IXJ0_ARATH Isoform 1 of Tudor/PWWP/MBT superfamily protein OS=Arabidopsis thaliana OX=3702 GN=PWWP3 PE=1 SV=1 CANONICAL=F4IXJ0-1" }, "locus": { "chromosome": "3", "start_pos": 7489167, "end_pos": 7492863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G21295.1", "url": "https://www.ensemblgenomes.org/id/AT3G21295.1" }, { "database": "Ensembl Peptide", "id": "AT3G21295.1", "url": "https://www.ensemblgenomes.org/id/AT3G21295.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQB9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQB9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQB9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQB9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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"https://alphafold.ebi.ac.uk/entry/F4J3J5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J3J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3J5" }, { "id": "PS50030", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50030" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBA", "eco_id": "ECO_0000259", "start_pos": 448, "end_pos": 499, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 362 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 73, 75, 82, 83, 84, 103, 318, 445, 447, 452 ], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 416, "end_pos": 418 }, { "start_pos": 87, "end_pos": 89 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 10 }, { "field": "total_sites", "count": 10 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IXX3-1", "uniprot_ac": "F4IXX3", "uniprot_id": "F4IXX3_ARATH", "mass": { "chemical_mass": 99717.0, "monoisotopic_mass": 99717.0 }, "refseq": { "ac": "NP_190509", "name": "Transducin/WD40 repeat-like superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190509" }, "gene_names": [], "protein_names": [ { "name": "Transducin/WD40 repeat-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_190509", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190509" }, { "id": "F4IXX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IXX3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IXX3", "url": "https://www.uniprot.org/uniprotkb/F4IXX3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IXX3", "locus": {} } ], "crossref": [ { "id": "F4IXX3", "url": "https://alphafold.ebi.ac.uk/entry/F4IXX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G49400", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G49400", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824102", "url": "https://www.ncbi.nlm.nih.gov/gene/824102", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G49400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G49400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LFEPCIM", "url": "https://omabrowser.org/oma/group/LFEPCIM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15496", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15496", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15496:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15496:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12657", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12657", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190509", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190509", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G49400", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G49400", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LR41", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LR41-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LR42", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LR42-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IXX2", "url": "https://www.uniprot.org/uniprotkb/F4IXX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IXX2-1", "url": "https://www.uniprot.org/uniprotkb/F4IXX2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IXX3", "url": "https://www.uniprot.org/uniprotkb/F4IXX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IXX3-1", "url": "https://www.uniprot.org/uniprotkb/F4IXX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRFQEASLVTSPSYPNAVAWSSENLIAVAAGHLVIIINPALPTGPRGLITISDAELYQIGRVRSQDLLTGGLLPSSLKRERSPCVRSLSWSEIGMSPNHGCLLAVCTAEGRVKLYRPPYSDFCAEWIEIVDISKMLYENLSSMNFGESKNPSTSLSKDQVVEHDHEEDERISSLKARKRRKTSANNINLHEKNYTDRASCSKQDSKAEHNVLEIEVYKQASNGQDRRSLPKALKKCSQEISPQTYVSREALLSSHSVAWSSLLRFSSESSCGNMLRFSLLAIGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQTHSSWVSTMSWGIFGCDSSNPQVVLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVSNHYNAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNYVRSWILCENAISEVPIPANTPGLSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQSGESEDSTETVTEAILGFSKNEFANWESNILWSLKEFNYLNKPLVLWDMVAAMLAFKQSMPEFVELVLTKWLSVSYLGFHDDISMEDLVPKITKRFSDVPSRLLHILNVISRRVMLSELKTEEINRKLQGQRTNDEGEIDLWLKLLQESERELRERLVGLSFSAYLLAESSQGTISPPSWNWRPAGLALLQQWVEINRDIVHSQLETLSLEVKSSRTRSSNSTETALEEEKCPYCAAPVNFHSAEEAFCESSHQKKKKSKDKERCDESHKLERCCVSMQVCPPTPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASKPFCLFCGVLLQRKQPEFLLSASPV", "length": 892, "header": "tr|F4IXX3-1|F4IXX3_ARATH Isoform 1 of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXX3-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LR41-1", "url": "https://www.uniprot.org/uniprotkb/F4IXX3/entry#A0A1I9LR41-1", "sequence": { "sequence": "MASRFQEASLVTSPSYPNAVAWSSENLIAVAAGHLVIIINPALPTGPRGLITISDAELYQIGRVRSQDLLTGGLLPSSLKRERSPCVRSLSWSEIGMSPNHGCLLAVCTAEGRVKLYRPPYSDFCAEWIEIVDISKMLYENLSSMNFGESKNPSTSLSKDQVVEHDHEEDERISSLKARKRRKTSANNINLHEKNYTDRASCSKQDSKAEHNVLEIEVYKQASNGQDRRSLPKALKKCSQEISPQTYVSREALLSSHSVAWSSLLRFSSESSCGNMLRFSLLAIGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQTHSSWVSTMSWGIFGCDSSNPQVVLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVSNHYNAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNYVRSWILCENAISEVPIPANTPGLSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQSGCYTFST", "length": 548, "header": "tr|A0A1I9LR41-1|F4IXX3_ARATH Computationally mapped isoform of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXX3-1" }, "locus": { "chromosome": "3", "start_pos": 18319094, "end_pos": 18324624, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G49400.4", "url": "https://www.ensemblgenomes.org/id/AT3G49400.4" }, { "database": "Ensembl Peptide", "id": "AT3G49400.4", "url": "https://www.ensemblgenomes.org/id/AT3G49400.4" } ] } }, { "isoform_ac": "A0A1I9LR42-1", "url": "https://www.uniprot.org/uniprotkb/F4IXX3/entry#A0A1I9LR42-1", "sequence": { "sequence": "MLYENLSSMNFGESKNPSTSLSKDQVVEHDHEEDERISSLKARKRRKTSANNINLHEKNYTDRASCSKQDSKAEHNVLEIEVYKQASNGQDRRSLPKALKKCSQEISPQTYVSREALLSSHSVAWSSLLRFSSESSCGNMLRFSLLAIGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQTHSSWVSTMSWGIFGCDSSNPQVVLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVSNHYNAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNYVRSWILCENAISEVPIPANTPGLSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQSGESEDSTETVTEAILGFSKNEFANWESNILWSLKEFNYLNKPLVLWDMVAAMLAFKQSMPEFVELVLTKWLSVSYLGFHDDISMEDLVPKITKRFSDVPSRLLHILNVISRRVMLSELKTEEINRKLQGQRTNDEGEIDLWLKLLQESERELRERLVGLSFSAYLLAESSQGTISPPSWNWRPAGLALLQQWVEINRDIVHSQLETLSLEVKSSRTRSSNSTETALEEEKCPYCAAPVNFHSAEEAFCESSHQKKKKSKDKERCDESHKLERCCVSMQVCPPTPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASKPFCLFCGVLLQRKQPEFLLSASPV", "length": 756, "header": "tr|A0A1I9LR42-1|F4IXX3_ARATH Computationally mapped isoform of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXX3-1" }, "locus": { "chromosome": "3", "start_pos": 18319060, "end_pos": 18323576, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G49400.3", "url": "https://www.ensemblgenomes.org/id/AT3G49400.3" }, { "database": "Ensembl Peptide", "id": "AT3G49400.3", "url": "https://www.ensemblgenomes.org/id/AT3G49400.3" } ] } }, { "isoform_ac": "F4IXX2-1", "url": "https://www.uniprot.org/uniprotkb/F4IXX3/entry#F4IXX2-1", "sequence": { "sequence": "MASRFQEASLVTSPSYPNAVAWSSENLIAVAAGHLVIIINPALPTGPRGLITISDAELYQIGRVRSQDLLTGGLLPSSLKRERSPCVRSLSWSEIGMSPNHGCLLAVCTAEGRVKLYRPPYSDFCAEWIEIVDISKMLYENLSSMNFGESKNPSTSLSKDQVVEHDHEEDERISSLKARKRRKTSANNINLHEKNYTDRASCSKQDSKAEHNVLEIEVYKQASNGQDRRSLPKALKKCSQEISPQTYVSREALLSSHSVAWSSLLRFSSESSCGNMLRFSLLAIGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQTHSSWVSTMSWGIFGCDSSNPQVVLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVSNHYNAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVDNYVRSWILCENAISEVPIPANTPGLSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQSGESEDSTETVTEAILGFSKNEFANWESNILWSLKEFNYLNKPLVLWDMVAAMLAFKQSMPEFVELVLTKWLSVSYLGFHDDISMEDLVPKITKRFSDVPSRLLHILNVISRRVMLSELKTEEINRKLQGQRTNDEGEIDLWLKLLQESERELRERLVGLSFSAYLLAESSQGTISPPSWNWRPAGLALLQQWVEINRDIVHSQLETLSLEVKSSRTRSSNSTETALEEEKCPYCAAPVNFHSAEEAFCESSHQKKKKSKDKERCDESHKLERCCVSMQVCPPTPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASKPFCLFCGVLLQRKQPEFLLSASPV", "length": 874, "header": "tr|F4IXX2-1|F4IXX2_ARATH Computationally mapped isoform of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXX3-1" }, "locus": { "chromosome": "3", "start_pos": 18319213, "end_pos": 18324624, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G49400.2", "url": "https://www.ensemblgenomes.org/id/AT3G49400.2" }, { "database": "Ensembl Peptide", "id": "AT3G49400.2", "url": "https://www.ensemblgenomes.org/id/AT3G49400.2" } ] } }, { "isoform_ac": "F4IXX3-1", "url": "https://www.uniprot.org/uniprotkb/F4IXX3/entry#F4IXX3-1", "sequence": { "sequence": "MASRFQEASLVTSPSYPNAVAWSSENLIAVAAGHLVIIINPALPTGPRGLITISDAELYQIGRVRSQDLLTGGLLPSSLKRERSPCVRSLSWSEIGMSPNHGCLLAVCTAEGRVKLYRPPYSDFCAEWIEIVDISKMLYENLSSMNFGESKNPSTSLSKDQVVEHDHEEDERISSLKARKRRKTSANNINLHEKNYTDRASCSKQDSKAEHNVLEIEVYKQASNGQDRRSLPKALKKCSQEISPQTYVSREALLSSHSVAWSSLLRFSSESSCGNMLRFSLLAIGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQTHSSWVSTMSWGIFGCDSSNPQVVLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVSNHYNAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNYVRSWILCENAISEVPIPANTPGLSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQSGESEDSTETVTEAILGFSKNEFANWESNILWSLKEFNYLNKPLVLWDMVAAMLAFKQSMPEFVELVLTKWLSVSYLGFHDDISMEDLVPKITKRFSDVPSRLLHILNVISRRVMLSELKTEEINRKLQGQRTNDEGEIDLWLKLLQESERELRERLVGLSFSAYLLAESSQGTISPPSWNWRPAGLALLQQWVEINRDIVHSQLETLSLEVKSSRTRSSNSTETALEEEKCPYCAAPVNFHSAEEAFCESSHQKKKKSKDKERCDESHKLERCCVSMQVCPPTPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASKPFCLFCGVLLQRKQPEFLLSASPV", "length": 892, "header": "tr|F4IXX3-1|F4IXX3_ARATH Isoform 1 of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXX3-1" }, "locus": { "chromosome": "3", "start_pos": 18319060, "end_pos": 18324520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G49400.1", "url": "https://www.ensemblgenomes.org/id/AT3G49400.1" }, { "database": "Ensembl Peptide", "id": "AT3G49400.1", "url": "https://www.ensemblgenomes.org/id/AT3G49400.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 185, "end_pos": 185, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1I9LR41", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1I9LR41" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser185" }, { "start_pos": 66, "end_pos": 66, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1I9LR41", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1I9LR41" } ], "site_lbl": "Ser66" }, { "start_pos": 77, "end_pos": 77, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1I9LR41", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1I9LR41" } ], "site_lbl": "Ser77" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LR41", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR41" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "A0A1I9LR41", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1I9LR41" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LR41", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR41" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G49400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G49400", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "transcription factor TFIIIC complex", "id": "GO:0000127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000127", "evidence": [ { "database": "UniProtKB", "id": "F4IXX3", "url": "https://www.uniprot.org/uniprotkb/F4IXX3" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IXX3", "url": "https://www.uniprot.org/uniprotkb/F4IXX3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone acetyltransferase activity", "id": "GO:0004402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004402", "evidence": [ { "database": "UniProtKB", "id": "F4IXX3", "url": "https://www.uniprot.org/uniprotkb/F4IXX3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transcription initiation at RNA polymerase III promoter", "id": "GO:0006384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006384", "evidence": [ { "database": "UniProtKB", "id": "F4IXX3", "url": "https://www.uniprot.org/uniprotkb/F4IXX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 761, "end_pos": 763, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IXX3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 892, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IXX3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IXX3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IXX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IXX3" }, { "id": "PF12657", "database": "Pfam", 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"authors" ] } ] }, { "uniprot_canonical_ac": "F4J0B5-1", "uniprot_ac": "F4J0B5", "uniprot_id": "F4J0B5_ARATH", "mass": { "chemical_mass": 113770.0, "monoisotopic_mass": 113770.0 }, "refseq": { "ac": "NP_189496", "name": "Proline-rich extensin-like family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189496" }, "gene_names": [ { "name": "EXT16", "type": "recommended", "evidence": [ { "id": "F4J0B5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0B5" } ] } ], "protein_names": [ { "name": "Proline-rich extensin-like family protein", "type": "synonym", "evidence": [ { "id": "NP_189496", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189496" }, { "id": "F4J0B5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0B5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28550", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SWAKYHL", "url": "https://omabrowser.org/oma/group/SWAKYHL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR36586", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36586", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36586:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36586:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04554", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04554", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189496", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189496", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G28550", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G28550", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LRL7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LRL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LRL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LRL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J0B5", "url": "https://www.uniprot.org/uniprotkb/F4J0B5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J0B5-1", "url": "https://www.uniprot.org/uniprotkb/F4J0B5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1024, "header": "tr|F4J0B5-1|F4J0B5_ARATH Isoform 1 of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT16 PE=4 SV=1 CANONICAL=F4J0B5-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LRL7-1", "url": "https://www.uniprot.org/uniprotkb/F4J0B5/entry#A0A1I9LRL7-1", "sequence": { "sequence": "MISSSKMGPSAHLVYAIGVIIMATMVAAYEPYTDSSPPPYSVPLPKVEYKSPPLPDVYSSPPPPLEYSPAPKVDYKSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPIYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPSPYVYNSPPPSYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPTPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKIVYKSPPPPYVYSSPPPPYYTPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVLYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPAPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPSYSPSPKTEY", "length": 657, "header": "tr|A0A1I9LRL7-1|F4J0B5_ARATH Computationally mapped isoform of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT16 PE=4 SV=1 CANONICAL=F4J0B5-1" }, "locus": { "chromosome": "3", "start_pos": 10700562, "end_pos": 10704018, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28550.2", "url": "https://www.ensemblgenomes.org/id/AT3G28550.2" }, { "database": "Ensembl Peptide", "id": "AT3G28550.2", "url": "https://www.ensemblgenomes.org/id/AT3G28550.2" } ] } }, { "isoform_ac": "F4J0B5-1", "url": "https://www.uniprot.org/uniprotkb/F4J0B5/entry#F4J0B5-1", "sequence": { "sequence": "MISSSKMGPSAHLVYAIGVIIMATMVAAYEPYTDSSPPPYSVPLPKVEYKSPPLPDVYSSPPPPLEYSPAPKVDYKSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPIYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPSPYVYNSPPPSYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKIVYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPTPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKIVYKSPPPPYVYSSPPPPYYTPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVLYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPSPYHAPSPKVLYKSPPHPHVCVCPPPPPCYSPSPKVVYKSSPPPYVYSSPPPPYHSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPAPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPSYSPSPKTEY", "length": 1024, "header": "tr|F4J0B5-1|F4J0B5_ARATH Isoform 1 of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT16 PE=4 SV=1 CANONICAL=F4J0B5-1" }, "locus": { "chromosome": "3", "start_pos": 10700638, "end_pos": 10704010, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28550.1", "url": "https://www.ensemblgenomes.org/id/AT3G28550.1" }, { "database": "Ensembl Peptide", "id": "AT3G28550.1", "url": "https://www.ensemblgenomes.org/id/AT3G28550.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 336, "start_aa": "Thr", "end_pos": 336, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr336", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 409, "start_aa": "Thr", "end_pos": 409, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr409", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LRL7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LRL7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LRL7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LRL7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G28550", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28550", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of cell wall", "id": "GO:0005199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005199", "evidence": [ { "database": "UniProtKB", "id": "F4J0B5", "url": "https://www.uniprot.org/uniprotkb/F4J0B5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "plant-type cell wall organization", "id": "GO:0009664", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009664", "evidence": [ { "database": "UniProtKB", "id": "F4J0B5", "url": "https://www.uniprot.org/uniprotkb/F4J0B5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J0B5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1024, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J0B5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J0B5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J0B5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0B5" }, { "id": "PF04554", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04554" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Extensin", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 122, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 336, 409 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J262-1", "uniprot_ac": "F4J262", "uniprot_id": "F4J262_ARATH", "mass": { "chemical_mass": 63246.0, "monoisotopic_mass": 63246.0 }, "refseq": { "ac": "NP_191276", "name": "N-acetylglucosaminyl transferase component family protein / Gpi1 family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191276" }, "gene_names": [], "protein_names": [ { "name": "N-acetylglucosaminyl transferase component family protein / Gpi1 family protein", "type": "synonym", "evidence": [ { "id": "NP_191276", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191276" }, { "id": "F4J262", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J262/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J262", "url": "https://www.uniprot.org/uniprotkb/F4J262" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J262", "locus": {} } ], "crossref": [ { "id": "F4J262", "url": "https://alphafold.ebi.ac.uk/entry/F4J262", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G57170", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G57170", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824884", "url": "https://www.ncbi.nlm.nih.gov/gene/824884", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G57170", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G57170", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TEIICSW", "url": "https://omabrowser.org/oma/group/TEIICSW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47555", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47555", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47555:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47555:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05024", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05024", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_191276", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191276", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G57170", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G57170", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LS22", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LS22-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J262", "url": "https://www.uniprot.org/uniprotkb/F4J262", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J262-1", "url": "https://www.uniprot.org/uniprotkb/F4J262-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILQSIELWNSIQVLDCIIYTGMGILYLNAMSTYVIVYDTPVFGSHHFSLSFSNSSPQTKAPLKKPKWVDDLHNRKPLNEMETVILSLNCAAAAKIAYKKISTQLETSSQNFSISYLISSLTWRLLATILGSLSSLYYSLAQFFYLLSSFLIFSWVHIASRRVLKNTWINFRIRSCQILYWPIFLEEIDMMSISCVKHAEEAALQRHSTWSAMAVDLVLGNLIGLGLLFNTESVCSFVFDFAKEFTNGILRSGSVWLMGVPAGFKLNTELAGVLGMVSLNVIQIWSTLWVFMASFIFCLIRVIAILGITFGATVSAAFVIDVITFATLHIMALHWAITLVYSHQIQALAALWRLFRGRKLNPLRQRMDSYGYTVKQHVVGSLLFTPLLLLLPTTSVFYIFFTITSTTINSICMLIEFAISVIHATPYAEVMIWLVRRKRFPCGVWFEMEHCGEHILKSNDAFEDSKSLLEEHGTPEKNSLMVSNLRSNFLTLGQILLPHYKTIFSGISASSLTTSARGVLSGKRMPSKLGLDLPPPRPWLHMPLRQYWMLCHNSISSCGK", "length": 560, "header": "tr|F4J262-1|F4J262_ARATH Isoform 1 of N-acetylglucosaminyl transferase component family protein / Gpi1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J262-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LS22-1", "url": "https://www.uniprot.org/uniprotkb/F4J262/entry#A0A1I9LS22-1", "sequence": { "sequence": "MILQSIELWNSIQVLDCIIYTGMGILYLNAMSTYVIVYDTPVFGSHHFSLSFSNSSPQTKAPLKKPKWVDDLHNRKPLNEMETVILSLNCAAAAKIAYKKISTQLETSSQNFSISYLISSLTWRLLATILGSLSSLYYSLAQFFYLLSSFLIFSWVHIASRRVLKNTWINFRIRSCQILYWPIFLEEIDMMSISCVKHAEEAALQRHSTWSAMAVDLVLGNLIGLGLLFNTESVCSFVFDFAKEFTNGILRSGSVWLMGVPAGFKLNTELAGVLGMVSLNVIQIWSTLWVFMASFIFCLIRVIAILGITFGATVSAAFVIDVITFATLHIMALHWAITLVYSHQIQALAALWRLFRGRKLNPLRQRMDSYGYTVKQHVVGSLLFTPLLLLLPTTSVFYIFFTITSTTINSICMLIEFAISVIHATPYAEVMIWLVRRKRFPCGVWFEMEHCGEHILKSNDAFEDSKSLLEEHGTPEKNSLMVSNLRSNFLTLGKLVDCSKSNDKLI", "length": 506, "header": "tr|A0A1I9LS22-1|F4J262_ARATH Computationally mapped isoform of N-acetylglucosaminyl transferase component family protein / Gpi1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J262-1" }, "locus": { "chromosome": "3", "start_pos": 21159399, "end_pos": 21163296, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G57170.2", "url": "https://www.ensemblgenomes.org/id/AT3G57170.2" }, { "database": "Ensembl Peptide", "id": "AT3G57170.2", "url": "https://www.ensemblgenomes.org/id/AT3G57170.2" } ] } }, { "isoform_ac": "F4J262-1", "url": "https://www.uniprot.org/uniprotkb/F4J262/entry#F4J262-1", "sequence": { "sequence": "MILQSIELWNSIQVLDCIIYTGMGILYLNAMSTYVIVYDTPVFGSHHFSLSFSNSSPQTKAPLKKPKWVDDLHNRKPLNEMETVILSLNCAAAAKIAYKKISTQLETSSQNFSISYLISSLTWRLLATILGSLSSLYYSLAQFFYLLSSFLIFSWVHIASRRVLKNTWINFRIRSCQILYWPIFLEEIDMMSISCVKHAEEAALQRHSTWSAMAVDLVLGNLIGLGLLFNTESVCSFVFDFAKEFTNGILRSGSVWLMGVPAGFKLNTELAGVLGMVSLNVIQIWSTLWVFMASFIFCLIRVIAILGITFGATVSAAFVIDVITFATLHIMALHWAITLVYSHQIQALAALWRLFRGRKLNPLRQRMDSYGYTVKQHVVGSLLFTPLLLLLPTTSVFYIFFTITSTTINSICMLIEFAISVIHATPYAEVMIWLVRRKRFPCGVWFEMEHCGEHILKSNDAFEDSKSLLEEHGTPEKNSLMVSNLRSNFLTLGQILLPHYKTIFSGISASSLTTSARGVLSGKRMPSKLGLDLPPPRPWLHMPLRQYWMLCHNSISSCGK", "length": 560, "header": "tr|F4J262-1|F4J262_ARATH Isoform 1 of N-acetylglucosaminyl transferase component family protein / Gpi1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J262-1" }, "locus": { "chromosome": "3", "start_pos": 21159373, "end_pos": 21163322, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G57170.1", "url": "https://www.ensemblgenomes.org/id/AT3G57170.1" }, { "database": "Ensembl Peptide", "id": "AT3G57170.1", "url": "https://www.ensemblgenomes.org/id/AT3G57170.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, 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"https://www.uniprot.org/uniprotkb/A0A1I9LS22" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LS22", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS22" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G57170", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G57170", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4J262", "url": "https://www.uniprot.org/uniprotkb/F4J262" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4J262", "url": "https://www.uniprot.org/uniprotkb/F4J262" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transferase activity", "id": "GO:0016740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016740", "evidence": [ { "database": "UniProtKB", "id": "F4J262", "url": "https://www.uniprot.org/uniprotkb/F4J262" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "GPI anchor biosynthetic process", "id": "GO:0006506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006506", "evidence": [ { "database": "UniProtKB", "id": "F4J262", "url": "https://www.uniprot.org/uniprotkb/F4J262" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J262-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 560, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J262-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J262" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IWB2-1", "uniprot_ac": "F4IWB2", "uniprot_id": "F4IWB2_ARATH", "mass": { "chemical_mass": 31784.0, "monoisotopic_mass": 31784.0 }, "refseq": { "ac": "NP_188725", "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188725" }, "gene_names": [], "protein_names": [ { "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "type": "synonym", "evidence": [ { "id": "NP_188725", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188725" }, { "id": "F4IWB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IWB2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IWB2", "url": "https://www.uniprot.org/uniprotkb/F4IWB2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IWB2", "locus": {} } ], "crossref": [ { "id": "F4IWB2", "url": "https://alphafold.ebi.ac.uk/entry/F4IWB2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G20890", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G20890", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd12254", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12254", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "821638", "url": "https://www.ncbi.nlm.nih.gov/gene/821638", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G20890", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G20890", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RAKSHDE", "url": "https://omabrowser.org/oma/group/RAKSHDE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1I9LS69", "url": "https://www.orthodb.org/?gene=A0A1I9LS69", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IWB2", "url": "https://www.orthodb.org/?gene=F4IWB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13976", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13976", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28441", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28441", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_188725", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188725", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G20890", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G20890", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LS69", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LS69-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IWB2", "url": "https://www.uniprot.org/uniprotkb/F4IWB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IWB2-1", "url": "https://www.uniprot.org/uniprotkb/F4IWB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFYRGYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR", "length": 292, "header": "tr|F4IWB2-1|F4IWB2_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IWB2-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LS69-1", "url": "https://www.uniprot.org/uniprotkb/F4IWB2/entry#A0A1I9LS69-1", "sequence": { "sequence": "MDLILVLALCITLMDLLLLLHLLLFLRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR", "length": 229, "header": "tr|A0A1I9LS69-1|F4IWB2_ARATH Computationally mapped isoform of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IWB2-1" }, "locus": { "chromosome": "3", "start_pos": 7319798, "end_pos": 7321568, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G20890.2", "url": "https://www.ensemblgenomes.org/id/AT3G20890.2" }, { "database": "Ensembl Peptide", "id": "AT3G20890.2", "url": "https://www.ensemblgenomes.org/id/AT3G20890.2" } ] } }, { "isoform_ac": "F4IWB2-1", "url": "https://www.uniprot.org/uniprotkb/F4IWB2/entry#F4IWB2-1", "sequence": { "sequence": "MFYRGYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR", "length": 292, "header": "tr|F4IWB2-1|F4IWB2_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IWB2-1" }, "locus": { "chromosome": "3", "start_pos": 7319789, "end_pos": 7321803, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G20890.1", "url": "https://www.ensemblgenomes.org/id/AT3G20890.1" }, { "database": "Ensembl Peptide", "id": "AT3G20890.1", "url": "https://www.ensemblgenomes.org/id/AT3G20890.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LS69", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS69" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LS69", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS69" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G20890", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G20890", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F4IWB2", "url": "https://www.uniprot.org/uniprotkb/F4IWB2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IWB2", "url": "https://www.uniprot.org/uniprotkb/F4IWB2" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F4IWB2", "url": "https://www.uniprot.org/uniprotkb/F4IWB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IWB2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 292, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IWB2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IWB2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IWB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IWB2" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 204, "end_pos": 292, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 162, "end_pos": 164 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"monoisotopic_mass": 137960.0 }, "refseq": { "ac": "NP_190055", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190055" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4J364", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J364/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_190055", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190055" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J364", "url": "https://www.uniprot.org/uniprotkb/F4J364" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J364", "locus": {} } ], "crossref": [ { "id": "F4J364", "url": "https://alphafold.ebi.ac.uk/entry/F4J364", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G44690", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G44690", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "823595", "url": "https://www.ncbi.nlm.nih.gov/gene/823595", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G44690", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G44690", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HETNSYG", "url": "https://omabrowser.org/oma/group/HETNSYG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "NP_190055", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190055", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G44690", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G44690", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LT06", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LT06-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J364", "url": "https://www.uniprot.org/uniprotkb/F4J364", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J364-1", "url": "https://www.uniprot.org/uniprotkb/F4J364-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLMRERIRDSLPQRLSSPSPTSDRDGNESSMIKLGDVSSRSDKIDMVSHRVDEQKHDIDGIRQDSDLYDVEIQRSTEFSNKDRREEEERDDERYTKHYHLQEDSGKRYPESSRFITSHDHPSRLSDEPKPSRFITSHDDEYSPSHGKINVLLRNDKTKRLESISRECSDSSRHSEDGRERDTYRYESSPLSQVGSSVADFQDESSRLVSSDSRSFGCVNDSDERRRHDYDGNLCVPQVLRTRRVDDYVGRNSPRDQQVRDLSRGDHDSPVVSRCVKEIVDEARDNYHIGSDIAMREFPSVRHEVNNVARENDLFMQRRGSLSKSHVCGSNIADVDAADTHLEFSRKERMADHYESVKEDYPFVELGSRVVDERDDHYRNFRNEERKVVYLDNKCQVLRKDYLYDGVDSKKNLDFSEPYAVVDRDDKASQSITRCLNKEREAYLDNERNAVFSDDKRQELRNEYHPGNDGRIHSDVDMADIVVDQDGRGVQLQRRCLNKGKAAYLDNERKDVYLNYKIQQLEKDYDSRSDAKIYPDDVNRLDILADWERENSRGLRYRGGSLNDRREAYLQCESQQLLNDYETNSYGIMHPDVNKSDTLEDREDSRGLRYRGGSLNDKKEAYMQCERQRLLNDYETNSYGMMHPHVNKSDTLVDHEDGRGRRYRGVSLNDKKEAYLQCERQRLLNDHETDSYVMRHPDVNKSDILVDHEDARGRRYGGVSLNDKKDAYLQCENQQLLNDYETDSYVMMPPDVNRSDILVDHEDARGLRYRGVSLNDRKEAYFQSESQQLLKDHETNSFGMMHPSLNKSDILVNGEEARALERRRGSFDDGEESYMDYKRGDAYLHYESQQLKKDHDYGIDDRIYRDVNSSDIIVDHGDAKALELRRVAFIDRNEAYLDNESKDVYQHYNKQQLKYYDSGIDERMYPAVTKAEIVDRGGARALERKGMSSNDGREAYLPYESQQLLRDHEIDSYGVMHPDVSRSSAGKQDEEALRGRRYLFDDRDQVYLDDERLQRRNGGDVKVYANMRYQDGRQEVYHSNDSILRTRDDYGLRDNASEVMHENMPYDYNYRDAKQSRMSYEKADSKRFREHEVAYDYRDKLGNYAVDGGISREQFRYSADERNSGNVDHTSTRRRRLSAKERLGGRVEEDSRVHVKHRLHQVRNPNLKGKSHKRYLS", "length": 1176, "header": "tr|F4J364-1|F4J364_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J364-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LT06-1", "url": "https://www.uniprot.org/uniprotkb/F4J364/entry#A0A1I9LT06-1", "sequence": { "sequence": "MLMRERIRDSLPQRLSSPSPTSDRDGNESSMIKLGDVSSRSDKIDMVSHRVDEQKHDIDGIRQDSDLYDVEIQRSTEFSNKDRREEEERDDERYTKHYHLQEDSGKRYPESSRFITSHDHPSRLSDEPKPSRFITSHDDEYSPSHGKINVLLRNDKTKRLESISRECSDSSRHSEDGRERDTYRYESSPLSQVGSSVADFQDESSRLVLRTRRVDDYVGRNSPRDQQVRDLSRGDHDSPVVSRCVKEIVDEARDNYHIGSDIAMREFPSVRHEVNNVARENDLFMQRRGSLSKSHVCGSNIADVDAADTHLEFSRKERMADHYESVKEDYPFVELGSRVVDERDDHYRNFRNEERKVVYLDNKCQVLRKDYLYDGVDSKKNLDFSEPYAVVDRDDKASQSITRCLNKEREAYLDNERNAVFSDDKRQELRNEYHPGNDGRIHSDVDMADIVVDQDGRGVQLQRRCLNKGKAAYLDNERKDVYLNYKIQQLEKDYDSRSDAKIYPDDVNRLDILADWERENSRGLRYRGGSLNDRREAYLQCESQQLLNDYETNSYGIMHPDVNKSDTLEDREDSRGLRYRGGSLNDKKEAYMQCERQRLLNDYETNSYGMMHPHVNKSDTLVDHEDGRGRRYRGVSLNDKKEAYLQCERQRLLNDHETDSYVMRHPDVNKSDILVDHEDARGRRYGGVSLNDKKDAYLQCENQQLLNDYETDSYVMMPPDVNRSDILVDHEDARGLRYRGVSLNDRKEAYFQSESQQLLKDHETNSFGMMHPSLNKSDILVNGEEARALERRRGSFDDGEESYMDYKRGDAYLHYESQQLKKDHDYGIDDRIYRDVNSSDIIVDHGDAKALELRRVAFIDRNEAYLDNESKDVYQHYNKQQLKYYDSGIDERMYPAVTKAEIVDRGGARALERKGMSSNDGREAYLPYESQQLLRDHEIDSYGVMHPDVSRSSAGKQDEEALRGRRYLFDDRDQVYLDDERLQRRNGGDVKVYANMRYQDGRQEVYHSNDSILRTRDDYGLRDNASEVMHENMPYDYNYRDAKQSRMSYEKADSKRFREHEVAYDYRDKLGNYAVDGGISREQFRYSADERNSGNVDHTSTRRRRLSAKERLGGRVEEDSRVHVKHRLHQVRNPNLKGKSHKRYLS", "length": 1146, "header": "tr|A0A1I9LT06-1|F4J364_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J364-1" }, "locus": { "chromosome": "3", "start_pos": 16230685, "end_pos": 16234287, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G44690.2", "url": "https://www.ensemblgenomes.org/id/AT3G44690.2" }, { "database": "Ensembl Peptide", "id": "AT3G44690.2", "url": "https://www.ensemblgenomes.org/id/AT3G44690.2" } ] } }, { "isoform_ac": "F4J364-1", "url": "https://www.uniprot.org/uniprotkb/F4J364/entry#F4J364-1", "sequence": { "sequence": "MLMRERIRDSLPQRLSSPSPTSDRDGNESSMIKLGDVSSRSDKIDMVSHRVDEQKHDIDGIRQDSDLYDVEIQRSTEFSNKDRREEEERDDERYTKHYHLQEDSGKRYPESSRFITSHDHPSRLSDEPKPSRFITSHDDEYSPSHGKINVLLRNDKTKRLESISRECSDSSRHSEDGRERDTYRYESSPLSQVGSSVADFQDESSRLVSSDSRSFGCVNDSDERRRHDYDGNLCVPQVLRTRRVDDYVGRNSPRDQQVRDLSRGDHDSPVVSRCVKEIVDEARDNYHIGSDIAMREFPSVRHEVNNVARENDLFMQRRGSLSKSHVCGSNIADVDAADTHLEFSRKERMADHYESVKEDYPFVELGSRVVDERDDHYRNFRNEERKVVYLDNKCQVLRKDYLYDGVDSKKNLDFSEPYAVVDRDDKASQSITRCLNKEREAYLDNERNAVFSDDKRQELRNEYHPGNDGRIHSDVDMADIVVDQDGRGVQLQRRCLNKGKAAYLDNERKDVYLNYKIQQLEKDYDSRSDAKIYPDDVNRLDILADWERENSRGLRYRGGSLNDRREAYLQCESQQLLNDYETNSYGIMHPDVNKSDTLEDREDSRGLRYRGGSLNDKKEAYMQCERQRLLNDYETNSYGMMHPHVNKSDTLVDHEDGRGRRYRGVSLNDKKEAYLQCERQRLLNDHETDSYVMRHPDVNKSDILVDHEDARGRRYGGVSLNDKKDAYLQCENQQLLNDYETDSYVMMPPDVNRSDILVDHEDARGLRYRGVSLNDRKEAYFQSESQQLLKDHETNSFGMMHPSLNKSDILVNGEEARALERRRGSFDDGEESYMDYKRGDAYLHYESQQLKKDHDYGIDDRIYRDVNSSDIIVDHGDAKALELRRVAFIDRNEAYLDNESKDVYQHYNKQQLKYYDSGIDERMYPAVTKAEIVDRGGARALERKGMSSNDGREAYLPYESQQLLRDHEIDSYGVMHPDVSRSSAGKQDEEALRGRRYLFDDRDQVYLDDERLQRRNGGDVKVYANMRYQDGRQEVYHSNDSILRTRDDYGLRDNASEVMHENMPYDYNYRDAKQSRMSYEKADSKRFREHEVAYDYRDKLGNYAVDGGISREQFRYSADERNSGNVDHTSTRRRRLSAKERLGGRVEEDSRVHVKHRLHQVRNPNLKGKSHKRYLS", "length": 1176, "header": "tr|F4J364-1|F4J364_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J364-1" }, "locus": { "chromosome": "3", "start_pos": 16230685, "end_pos": 16234310, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G44690.1", "url": "https://www.ensemblgenomes.org/id/AT3G44690.1" }, { "database": "Ensembl Peptide", "id": "AT3G44690.1", "url": "https://www.ensemblgenomes.org/id/AT3G44690.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 142, "end_pos": 142, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J364", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J364" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser142" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LT06", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT06" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28155", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001319663", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319663", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G28155", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G28155", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LT95", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LT95-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT95-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IZ00", "url": "https://www.uniprot.org/uniprotkb/F4IZ00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IZ00-1", "url": "https://www.uniprot.org/uniprotkb/F4IZ00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPAVKKASKGILSDVLKCLTNNIKHMREFTLAVVDKMVAGLSDFVDATHLLKPASNRSDGPTRRSAKNSGRMPFRDLESQWTRHDGNEYQRYKRLITSSCA", "length": 102, "header": "tr|F4IZ00-1|F4IZ00_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZ00-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LT95-1", "url": "https://www.uniprot.org/uniprotkb/F4IZ00/entry#A0A1I9LT95-1", "sequence": { "sequence": "MGPAVKKASKVAGLSDFVDATHLLKPASNRSDGPTRRSAKNSGRMPFRDLESQWTRHDGNEYQRYKRLITSSCA", "length": 74, "header": "tr|A0A1I9LT95-1|F4IZ00_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZ00-1" }, "locus": { "chromosome": "3", "start_pos": 10484962, "end_pos": 10485991, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28155.2", "url": "https://www.ensemblgenomes.org/id/AT3G28155.2" }, { "database": "Ensembl Peptide", "id": "AT3G28155.2", "url": "https://www.ensemblgenomes.org/id/AT3G28155.2" } ] } }, { "isoform_ac": "F4IZ00-1", "url": "https://www.uniprot.org/uniprotkb/F4IZ00/entry#F4IZ00-1", "sequence": { "sequence": "MGPAVKKASKGILSDVLKCLTNNIKHMREFTLAVVDKMVAGLSDFVDATHLLKPASNRSDGPTRRSAKNSGRMPFRDLESQWTRHDGNEYQRYKRLITSSCA", "length": 102, "header": "tr|F4IZ00-1|F4IZ00_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZ00-1" }, "locus": { "chromosome": "3", "start_pos": 10484781, "end_pos": 10485991, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28155.1", "url": "https://www.ensemblgenomes.org/id/AT3G28155.1" }, { "database": "Ensembl Peptide", "id": "AT3G28155.1", "url": "https://www.ensemblgenomes.org/id/AT3G28155.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LT95", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT95" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LT95", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT95" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G28155", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28155", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IZ00", "url": "https://www.uniprot.org/uniprotkb/F4IZ00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], 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}, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J108-1", "uniprot_ac": "F4J108", "uniprot_id": "F4J108_ARATH", "mass": { "chemical_mass": 45995.0, "monoisotopic_mass": 45995.0 }, "refseq": { "ac": "NP_001190170", "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190170" }, "gene_names": [], "protein_names": [ { "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "type": "synonym", "evidence": [ { "id": "NP_001190170", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190170" }, { "id": "F4J108", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J108/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J108", "url": "https://www.uniprot.org/uniprotkb/F4J108" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J108", "locus": {} } ], "crossref": [ { "id": "AT3G63450", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G63450", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd12458", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12458", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "825520", "url": "https://www.ncbi.nlm.nih.gov/gene/825520", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EFEECAD", "url": "https://omabrowser.org/oma/group/EFEECAD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24009", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24009", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24009:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24009:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23182", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23182", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190170", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190170", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G63450", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G63450", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LTE7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTE9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTE9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J108", "url": "https://www.uniprot.org/uniprotkb/F4J108", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J108-1", "url": "https://www.uniprot.org/uniprotkb/F4J108-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDLEERLSFLTPRTAEDFESDLGFGWGHRKEVLRSNSVPPRLANQFTGYPFSPKGVNLQQSEAQRAAALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKYRTKPSRDIMDFQLGGRAFHEDLLWKRRFEERALELQSTRLMNLQLLDVEKQFQLNFDQTLLVSPRLVSNNQRVCTKENDEDTIKLPESLEDDRLVDSPIVSPKHHFLECGVAAETKGSGLSSPSFDQDESSTGTLKEPLKSLKCQMPRLSMMGITQGSSGPTTCRVGI", "length": 406, "header": "tr|F4J108-1|F4J108_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J108-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LTE7-1", "url": "https://www.uniprot.org/uniprotkb/F4J108/entry#A0A1I9LTE7-1", "sequence": { "sequence": "MDGYSETLVGKMCSRAAALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTKPSRDIMDFQLGGRAFHEDLLWKRRFEERALELQSTRLMNLQLLDVEKQFQLNFDQTLLVSPRLVSNNQRVCTKENDEDTIKLPESLEDDRLVDSPIVSPKHHFLECGVAAETKGSGLSSPSFDQDESSTGTLKEPLKSLKCQMPRLSMMGITQGSSGPTTCRVGI", "length": 296, "header": "tr|A0A1I9LTE7-1|F4J108_ARATH Computationally mapped isoform of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J108-1" }, "locus": { "chromosome": "3", "start_pos": 23426749, "end_pos": 23429313, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G63450.6", "url": "https://www.ensemblgenomes.org/id/AT3G63450.6" }, { "database": "Ensembl Peptide", "id": "AT3G63450.6", "url": "https://www.ensemblgenomes.org/id/AT3G63450.6" } ] } }, { "isoform_ac": "A0A1I9LTE9-1", "url": "https://www.uniprot.org/uniprotkb/F4J108/entry#A0A1I9LTE9-1", "sequence": { "sequence": "MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDLEERLSFLTPRTAEDFESDLGFGWGHRKEVLRSNSVPPRLANQFTGYPFSPKGVNLQQSEAQRAAALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKYRTKPSRDIMDFQLGGRAFHEDLLWKRRFEERALELQSTRLMNLQLLDVEKQFQLNFDQTLLVSPRLVSNNQRVCTKENDEDTIKLPERYPQFDNRSFCELEEDLSIFCLFVCRCSAWRMIGWWIAQLYHRNTIFSSVG", "length": 376, "header": "tr|A0A1I9LTE9-1|F4J108_ARATH Computationally mapped isoform of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J108-1" }, "locus": { "chromosome": "3", "start_pos": 23426749, "end_pos": 23429231, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G63450.7", "url": "https://www.ensemblgenomes.org/id/AT3G63450.7" }, { "database": "Ensembl Peptide", "id": "AT3G63450.7", "url": "https://www.ensemblgenomes.org/id/AT3G63450.7" } ] } }, { "isoform_ac": "F4J108-1", "url": "https://www.uniprot.org/uniprotkb/F4J108/entry#F4J108-1", "sequence": { "sequence": "MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDLEERLSFLTPRTAEDFESDLGFGWGHRKEVLRSNSVPPRLANQFTGYPFSPKGVNLQQSEAQRAAALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKYRTKPSRDIMDFQLGGRAFHEDLLWKRRFEERALELQSTRLMNLQLLDVEKQFQLNFDQTLLVSPRLVSNNQRVCTKENDEDTIKLPESLEDDRLVDSPIVSPKHHFLECGVAAETKGSGLSSPSFDQDESSTGTLKEPLKSLKCQMPRLSMMGITQGSSGPTTCRVGI", "length": 406, "header": "tr|F4J108-1|F4J108_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J108-1" }, "locus": { "chromosome": "3", "start_pos": 23426607, "end_pos": 23428864, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G63450.5", "url": "https://www.ensemblgenomes.org/id/AT3G63450.5" }, { "database": "Ensembl Peptide", "id": "AT3G63450.5", "url": 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"MSEEFALRVEQGLQLARRIYYGKGIAPPVVPDPPSSPENFLPTAITAYASITDPVAVDNPDVPSYQPYVHARCDPSALVPLQMLGIEMNIDCWLDTAFVTVTGRWRVHCVRPSKRFDCCVGVPMGEKGSFLGAEIDVLNNEKSYQTKLVTEDETSDFDNVHKDKDSRFFKSHIYTFKIPHVAGGSIFSVNVTWSQKLIYKDGKFHLNVPFRFPSYVNPIGKEIIKREKIVLNMNSCVSGGEIASSFTSHPLKIIHRVAGELSCEYEAEVPSWSRVDFGVSFTVSSGDLCGNVLVKSPSPWDSDDRGIFCLYLFPGTTKHTKLFKRRVVFVIDISASMKWKPLEDVKKALLECLAKLQAEDVFNIIAFNDEILEFSTSMEFATDETISAVTEWLDSNLIANGGTNMLLPLKQAMKLLEGSNIGVPLVYLVTDGSVENEREICHAMKESCSRNGKSISPRISTFGIGSFCNHYFLQMLARIGNGYYDGTNNTDSFEHQMSRLFEIASSTIVANTTFDALKLLRSVELFPCQVPDITLGDPLILSGRYKGEFPDEVELRGTLADMSCFTIELTVQKAKDIPLDKVLARRQINELTARAWFEDKKELQEKVMRLSIQTGFPSEYTQMVLSVKHDEEEKTMARPVSIKEILRNPPYQIHKQMQRSNSMRRSLLGKQGYGFGNVAATLKNVPPWMEEPKEVEGTELLIRAASGVVDRVCCMCCLQCMSRVSDQCTIVFSQLCAALACFQCIGCCFEVCGCLA", "length": 756, "header": "tr|F4IDC8-1|F4IDC8_ARATH Isoform 1 of Inter alpha-trypsin inhibitor, heavy chain-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IDC8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ANU9-1", 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"length": 613, "header": "tr|A0A1P8ANW8-1|F4IDC8_ARATH Computationally mapped isoform of Inter alpha-trypsin inhibitor, heavy chain-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IDC8-1" }, "locus": { "chromosome": "1", "start_pos": 27295147, "end_pos": 27298715, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G72500.2", "url": "https://www.ensemblgenomes.org/id/AT1G72500.2" }, { "database": "Ensembl Peptide", "id": "AT1G72500.2", "url": "https://www.ensemblgenomes.org/id/AT1G72500.2" } ] } }, { "isoform_ac": "F4IDC8-1", "url": "https://www.uniprot.org/uniprotkb/F4IDC8/entry#F4IDC8-1", "sequence": { "sequence": "MSEEFALRVEQGLQLARRIYYGKGIAPPVVPDPPSSPENFLPTAITAYASITDPVAVDNPDVPSYQPYVHARCDPSALVPLQMLGIEMNIDCWLDTAFVTVTGRWRVHCVRPSKRFDCCVGVPMGEKGSFLGAEIDVLNNEKSYQTKLVTEDETSDFDNVHKDKDSRFFKSHIYTFKIPHVAGGSIFSVNVTWSQKLIYKDGKFHLNVPFRFPSYVNPIGKEIIKREKIVLNMNSCVSGGEIASSFTSHPLKIIHRVAGELSCEYEAEVPSWSRVDFGVSFTVSSGDLCGNVLVKSPSPWDSDDRGIFCLYLFPGTTKHTKLFKRRVVFVIDISASMKWKPLEDVKKALLECLAKLQAEDVFNIIAFNDEILEFSTSMEFATDETISAVTEWLDSNLIANGGTNMLLPLKQAMKLLEGSNIGVPLVYLVTDGSVENEREICHAMKESCSRNGKSISPRISTFGIGSFCNHYFLQMLARIGNGYYDGTNNTDSFEHQMSRLFEIASSTIVANTTFDALKLLRSVELFPCQVPDITLGDPLILSGRYKGEFPDEVELRGTLADMSCFTIELTVQKAKDIPLDKVLARRQINELTARAWFEDKKELQEKVMRLSIQTGFPSEYTQMVLSVKHDEEEKTMARPVSIKEILRNPPYQIHKQMQRSNSMRRSLLGKQGYGFGNVAATLKNVPPWMEEPKEVEGTELLIRAASGVVDRVCCMCCLQCMSRVSDQCTIVFSQLCAALACFQCIGCCFEVCGCLA", "length": 756, "header": "tr|F4IDC8-1|F4IDC8_ARATH Isoform 1 of Inter alpha-trypsin inhibitor, heavy chain-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IDC8-1" }, "locus": { "chromosome": "1", "start_pos": 27295147, "end_pos": 27298715, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G72500.1", "url": "https://www.ensemblgenomes.org/id/AT1G72500.1" }, { "database": "Ensembl Peptide", "id": "AT1G72500.1", "url": "https://www.ensemblgenomes.org/id/AT1G72500.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 641, "end_pos": 641, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IDC8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IDC8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser641" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ANU9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ANU9" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IDC8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IDC8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, 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"end_pos": 513, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IDC8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 756, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IDC8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IDC8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IDC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDC8" }, { "id": "PS50234", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFA", "eco_id": "ECO_0000259", "start_pos": 326, "end_pos": 517, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], 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"MFLRCFKPKFYKKSKSTTSYMKIRIDIVRRKRIAMVRNYKTDIVNFLKNGQDSEAYRRAELLLEELRIISCYDLIERFCDCISENLSLMLKKRECPEECREAVSSLIYATAWVPDVPELKDLRAVFTKRFGNFIASSVNHELVEKTELLRPPSRELKIQTVKDVANEFSINWDPTPLKLMLLRETSALQIKDKVETRADYLNKDTEKSFMDEHSDDESVLSESWRIDSLSKGSLSSSSSSSSSSLRRVSVRKKKGKKILPYGIISSPDTKLGAGNDEKAQEEKEEKRKIADQENSRLLGIQGSRSLTSTSNNEVSTIRENERMSSFQRPNLLDYDDVVARLAALRRR", "length": 347, "header": "tr|F4ICV8-1|F4ICV8_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL9 PE=1 SV=1 CANONICAL=F4ICV8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8APL3-1", "url": "https://www.uniprot.org/uniprotkb/F4ICV8/entry#A0A1P8APL3-1", "sequence": { "sequence": "MCQYLLLQAELLLEELRIISCYDLIERFCDCISENLSLMLKKRECPEECREAVSSLIYATAWVPDVPELKDLRAVFTKRFGNFIASSVNHELVEKTELLRPPSRELKIQTVKDVANEFSINWDPTPLKLMLLRETSALQIKDKVETRADYLNKDTEKSFMDEHSDDESVLSESWRIDSLSKGSLSSSSSSSSSSLRRVSVRKKKGKKILPYGIISSPDTKLGAGNDEKAQEEKEEKRKIADQENSRLLGIQGSRSLTSTSNNEVSTIRENERMSSFQRPNLLDYDDVVARLAALRRR", "length": 297, "header": "tr|A0A1P8APL3-1|F4ICV8_ARATH Computationally mapped isoform of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL9 PE=1 SV=1 CANONICAL=F4ICV8-1" }, "locus": { "chromosome": "1", "start_pos": 19481539, "end_pos": 19482863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52315.2", "url": "https://www.ensemblgenomes.org/id/AT1G52315.2" }, { "database": "Ensembl Peptide", "id": "AT1G52315.2", "url": "https://www.ensemblgenomes.org/id/AT1G52315.2" } ] } }, { "isoform_ac": "F4ICV8-1", "url": "https://www.uniprot.org/uniprotkb/F4ICV8/entry#F4ICV8-1", "sequence": { "sequence": "MFLRCFKPKFYKKSKSTTSYMKIRIDIVRRKRIAMVRNYKTDIVNFLKNGQDSEAYRRAELLLEELRIISCYDLIERFCDCISENLSLMLKKRECPEECREAVSSLIYATAWVPDVPELKDLRAVFTKRFGNFIASSVNHELVEKTELLRPPSRELKIQTVKDVANEFSINWDPTPLKLMLLRETSALQIKDKVETRADYLNKDTEKSFMDEHSDDESVLSESWRIDSLSKGSLSSSSSSSSSSLRRVSVRKKKGKKILPYGIISSPDTKLGAGNDEKAQEEKEEKRKIADQENSRLLGIQGSRSLTSTSNNEVSTIRENERMSSFQRPNLLDYDDVVARLAALRRR", "length": 347, "header": "tr|F4ICV8-1|F4ICV8_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL9 PE=1 SV=1 CANONICAL=F4ICV8-1" }, "locus": { "chromosome": "1", "start_pos": 19481046, "end_pos": 19482863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52315.1", "url": "https://www.ensemblgenomes.org/id/AT1G52315.1" }, { "database": "Ensembl Peptide", "id": "AT1G52315.1", "url": "https://www.ensemblgenomes.org/id/AT1G52315.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 186, "end_pos": 186, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ICV8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICV8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser186" }, { "start_pos": 266, "end_pos": 266, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ICV8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICV8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser266" }, { "start_pos": 305, "end_pos": 305, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ICV8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICV8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser305" }, { "start_pos": 310, "end_pos": 310, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ICV8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICV8" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser310" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APL3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APL3" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4ICV8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICV8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8APL3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8APL3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "F4ICV8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICV8" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "pathway": [ { "id": "ath:AT1G52315", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52315", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F4ICV8", "url": 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"field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"ac": "NP_564070", "name": "DNA repair metallo-beta-lactamase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_564070" }, "gene_names": [], "protein_names": [ { "name": "DNA repair metallo-beta-lactamase family protein", "type": "synonym", "evidence": [ { "id": "NP_564070", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_564070" }, { "id": "F4IDZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IDZ7", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7", "locus": {} } ], "crossref": [ { "id": "F4IDZ7", "url": "https://alphafold.ebi.ac.uk/entry/F4IDZ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G19025", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G19025", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "838484", "url": "https://www.ncbi.nlm.nih.gov/gene/838484", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011084", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011084", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G19025", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G19025", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SWHTLPR", "url": "https://omabrowser.org/oma/group/SWHTLPR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8ASA0", "url": "https://www.orthodb.org/?gene=A0A1P8ASA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8ASD8", "url": "https://www.orthodb.org/?gene=A0A1P8ASD8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IDZ7", "url": "https://www.orthodb.org/?gene=F4IDZ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23240", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23240", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23240:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23240:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07522", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07522", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_564070", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_564070", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G19025", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G19025", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8ASA0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ASA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ASD8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ASD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDZ7", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDZ7-1", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSIEMPRGLPFAVDTFGPYTETKRRKRHHFLTHAHKDHTVGVSPSNIVVFPIYSTSLTISLLLQRFPQLDESYFVRVEIGQSVIVDDPDGEFKVTAFDANHCPGAVMFLFEGSFGNILHTGDCRLTLDCLHSLPEKYVGRSHGMKPKCSLGYIFLDCTFGKSSHSQRFPTKHSAIRQIINCIWNHPDAPVVYLACDMLGQEDVLLEVSRTFGSKIYVDKATNLECFRSLMVIVPEIVSEDPSSRFHIFSGFPKLYERTSAKLAEARSKLQSEPLIIRPSAQWYVCDDEDDWKSGSIQKQRKVRFSEAVKDEFGLWHVCYSMHSSRAELESAMQLLSPKWVVSTVPSCRAMELNYVKKNCFISRFSPDDPFWKLLDIDMEASPVAAADTQTVALSCCLMSEQIILDSGKSKLEPVIESSSTKKKLLSLSPENSLPVTLFGRARQSSQECDQLHERKVIHTQCVYTKTSPVLEKLNVKVVIEPLQDDTKEETVEKESCTIFSTSTSKETCKDLSGDLRKLYRSMNAPVPRPLPSLMELMNARKRSRNHLSF", "length": 549, "header": "tr|F4IDZ7-1|F4IDZ7_ARATH Isoform 1 of DNA repair metallo-beta-lactamase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IDZ7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ASA0-1", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7/entry#A0A1P8ASA0-1", "sequence": { "sequence": "MKPKCSLGYIFLDCTFGKSSHSQRFPTKHSAIRQIINCIWNHPDAPVVYLACDMLGQEDVLLEVSRTFGSKIYVDKATNLECFRSLMVIVPEIVSEDPSSRFHIFSGFPKLYERTSAKLAEARSKLQSEPLIIRPSAQWYVCDDEDDWKSGSIQKQRKVRFSEAVKDEFGLWHVCYSMHSSRAELESAMQLLSPKWVVSTVPSCRAMELNYVKKNCFISRFSPDDPFWKLLDIDMEASPVAAADTQTVALSCCLMSEQIILDSGKSKLEPVIESSSTKKKLLSLSPENSLPVTLFGRARQSSQECDQLHERKVIHTQCVYTKTSPVLEKLNVKVVIEPLQDDTKEETVEKESCTIFSTSTSKETCKDLSGDLRKLYRSMNAPVPRPLPSLMELMNARKRSRNHLSF", "length": 406, "header": "tr|A0A1P8ASA0-1|F4IDZ7_ARATH Computationally mapped isoform of DNA repair metallo-beta-lactamase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IDZ7-1" }, "locus": { "chromosome": "1", "start_pos": 6568711, "end_pos": 6570939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G19025.3", "url": "https://www.ensemblgenomes.org/id/AT1G19025.3" }, { "database": "Ensembl Peptide", "id": "AT1G19025.3", "url": "https://www.ensemblgenomes.org/id/AT1G19025.3" } ] } }, { "isoform_ac": "A0A1P8ASD8-1", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7/entry#A0A1P8ASD8-1", "sequence": { "sequence": "MFLFEGSFGNILHTGDCRLTLDCLHSLPEKYVGRSHGMKPKCSLGYIFLDCTFGKSSHSQRFPTKHSAIRQIINCIWNHPDAPVVYLACDMLGQEDVLLEVSRTFGSKIYVDKATNLECFRSLMVIVPEIVSEDPSSRFHIFSGFPKLYERTSAKLAEARSKLQSEPLIIRPSAQWYVCDDEDDWKSGSIQKQRKVRFSEAVKDEFGLWHVCYSMHSSRAELESAMQLLSPKWVVSTVPSCRAMELNYVKKNCFISRFSPDDPFWKLLDIDMEASPVAAADTQTVALSCCLMSEQIILDSGKSKLEPVIESSSTKKKLLSLSPENSLPVTLFGRARQSSQECDQLHERKVIHTQCVYTKTSPVLEKLNVKVVIEPLQDDTKEETVEKESCTIFSTSTSKETCKDLSGDLRKLYRSMNAPVPRPLPSLMELMNARKRSRNHLSF", "length": 443, "header": "tr|A0A1P8ASD8-1|F4IDZ7_ARATH Computationally mapped isoform of DNA repair metallo-beta-lactamase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IDZ7-1" }, "locus": { "chromosome": "1", "start_pos": 6568674, "end_pos": 6570939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G19025.2", "url": "https://www.ensemblgenomes.org/id/AT1G19025.2" }, { "database": "Ensembl Peptide", "id": "AT1G19025.2", "url": "https://www.ensemblgenomes.org/id/AT1G19025.2" } ] } }, { "isoform_ac": "F4IDZ7-1", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7/entry#F4IDZ7-1", "sequence": { "sequence": "MSIEMPRGLPFAVDTFGPYTETKRRKRHHFLTHAHKDHTVGVSPSNIVVFPIYSTSLTISLLLQRFPQLDESYFVRVEIGQSVIVDDPDGEFKVTAFDANHCPGAVMFLFEGSFGNILHTGDCRLTLDCLHSLPEKYVGRSHGMKPKCSLGYIFLDCTFGKSSHSQRFPTKHSAIRQIINCIWNHPDAPVVYLACDMLGQEDVLLEVSRTFGSKIYVDKATNLECFRSLMVIVPEIVSEDPSSRFHIFSGFPKLYERTSAKLAEARSKLQSEPLIIRPSAQWYVCDDEDDWKSGSIQKQRKVRFSEAVKDEFGLWHVCYSMHSSRAELESAMQLLSPKWVVSTVPSCRAMELNYVKKNCFISRFSPDDPFWKLLDIDMEASPVAAADTQTVALSCCLMSEQIILDSGKSKLEPVIESSSTKKKLLSLSPENSLPVTLFGRARQSSQECDQLHERKVIHTQCVYTKTSPVLEKLNVKVVIEPLQDDTKEETVEKESCTIFSTSTSKETCKDLSGDLRKLYRSMNAPVPRPLPSLMELMNARKRSRNHLSF", "length": 549, "header": "tr|F4IDZ7-1|F4IDZ7_ARATH Isoform 1 of DNA repair metallo-beta-lactamase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IDZ7-1" }, "locus": { "chromosome": "1", "start_pos": 6568674, "end_pos": 6570939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G19025.1", "url": "https://www.ensemblgenomes.org/id/AT1G19025.1" }, { "database": "Ensembl Peptide", "id": "AT1G19025.1", "url": "https://www.ensemblgenomes.org/id/AT1G19025.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ASA0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASA0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ASA0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASA0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G19025", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G19025", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IDZ7", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F4IDZ7", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7" } ], "pmid": "" }, { "name": "double-strand break repair via nonhomologous end joining", "id": "GO:0006303", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006303", "evidence": [ { "database": "UniProtKB", "id": "F4IDZ7", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7" } ], "pmid": "" }, { "name": "interstrand cross-link repair", "id": "GO:0036297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036297", "evidence": [ { "database": "UniProtKB", "id": "F4IDZ7", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "damaged DNA binding", "id": "GO:0003684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003684", "evidence": [ { "database": "UniProtKB", "id": "F4IDZ7", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7" } ], "pmid": "" }, { "name": "5'-3' DNA exonuclease activity", "id": "GO:0035312", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035312", "evidence": [ { "database": "UniProtKB", "id": "F4IDZ7", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IDZ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 549, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IDZ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IDZ7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IDZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDZ7" }, { "id": "PF07522", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07522" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA repair metallo-beta-lactamase", "eco_id": "ECO_0000259", "start_pos": 234, "end_pos": 347, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"protein_names": [ { "name": "Disease resistance protein (TIR-NBS-LRR class)", "type": "synonym", "evidence": [ { "id": "F4IEZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IEZ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IEZ7", "url": "https://www.uniprot.org/uniprotkb/F4IEZ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IEZ7", "locus": {} } ], "crossref": [ { "id": "AT1G72840", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G72840", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "843615", "url": "https://www.ncbi.nlm.nih.gov/gene/843615", 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G72840", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G72840", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8ASP5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { 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"length": 1017, "header": "tr|A0A1P8ASP5-1|F4IEZ7_ARATH Computationally mapped isoform of Disease resistance protein (TIR-NBS-LRR class) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IEZ7-1" }, "locus": { "chromosome": "1", "start_pos": 27409237, "end_pos": 27412916, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G72840.4", "url": "https://www.ensemblgenomes.org/id/AT1G72840.4" }, { "database": "Ensembl Peptide", "id": "AT1G72840.4", "url": "https://www.ensemblgenomes.org/id/AT1G72840.4" } ] } }, { "isoform_ac": "F4IEZ7-1", "url": "https://www.uniprot.org/uniprotkb/F4IEZ7/entry#F4IEZ7-1", "sequence": { "sequence": "MASSSSSSATRLRHYDVFLSFRGVDTRQTIVSHLYVALRNNGVLTFKDDRKLEIGDTIADGLVKAIQTSWFAVVILSENYATSTWCLEELRLIMQLHSEEQIKVLPIFYGVKPSDVRYQEGSFATAFQRYEADPEMEEKVSKWRRALTQVANLSGKHSRNCVDEADMIAEVVGGISSRLPRMKSTDLINLVGMEAHMMKMTLLLNIGCEDEVHMIGIWGMGGIGKSTIAKCLYDRFSRQFPAHCFLENVSKGYDIKHLQKELLSHILYDEDVELWSMEAGSQEIKERLGHQKVFVVLDNVDKVEQLHGLAKDPSWFGPGSRIIITTRDKGLLNSCGVNNIYEVKCLDDKDALQVFKKLAFGGRPPSDGFEQLFIRASRLAHGLPSALVAFASHLSAIVAIDEWEDELALLETFPQKNVQEILRASYDGLDQYDKTVFLHVACFFNGGHLRYIRAFLKNCDARINHLAAKCLVNISIDGCISMHILLVQTGREIVRQESDWRPSKQRFLWDPTEIHYVLDSNTGTRRVEGLSLHLCEMADTLLLRNSVFGPMHNLTFLKFFQHLGGNVSNLQLISDDYVLSRNLKLLHWDAYPLTILPPIFRPHTIIELSLRYSKLNSLWDGTKLLPNLRILDVTGSRNLRELPELSTAVNLEELILESCTSLVQIPESINRLYLRKLNMMYCDGLEGVILVNDLQEASLSRWGLKRIILNLPHSGATLSSLTDLAIQGKIFIKLSGLSGTGDHLSFSSVQKTAHQSVTHLLNSGFFGLKSLDIKRFSYRLDPVNFSCLSFADFPCLTELKLINLNIEDIPEDICQLQLLETLDLGGNDFVYLPTSMGQLAMLKYLSLSNCRRLKALPQLSQVERLVLSGCVKLGSLMGILGAGRYNLLDFCVEKCKSLGSLMGILSVEKSAPGRNELLELSLENCKSLVSLSEELSHFTKLTYLDLSSLEFRRIPTSIRELSFMRTLYLNNCNKIFSLTDLPESLKYLYAHGCESLEHVNFSSNHSFNHLDFSHCISLECISDLVRDFMNEEYSQEAPFRLVCITKYSIASTNNMRTSWREPMRIKLPKIKAAPKLVGFFVQIMVVCEKPFHLQFPAFSYNWDCEGSRLYRINLKPNLYQSSEMMEDNNNRPYKWHHLVIVQIPTGIISAEIDEVQFESHIQVPEPGDEIILCGVEHVGFVLK", "length": 1183, "header": "tr|F4IEZ7-1|F4IEZ7_ARATH Isoform 1 of Disease resistance protein (TIR-NBS-LRR class) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IEZ7-1" }, "locus": { "chromosome": "1", "start_pos": 27409196, "end_pos": 27413851, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G72840.3", "url": "https://www.ensemblgenomes.org/id/AT1G72840.3" }, { "database": "Ensembl Peptide", "id": "AT1G72840.3", "url": "https://www.ensemblgenomes.org/id/AT1G72840.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ASP5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASP5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ASP5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ASP5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G72840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G72840", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F4IEZ7", "url": "https://www.uniprot.org/uniprotkb/F4IEZ7" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": 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"https://www.orthodb.org/?gene=F4ID59", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43173:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43173:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03109", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_176770", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_176770", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G65950", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G65950", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8ATG0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ATG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8ATG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ATG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ID59", "url": "https://www.uniprot.org/uniprotkb/F4ID59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ID59-1", "url": "https://www.uniprot.org/uniprotkb/F4ID59-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEILRKFKILGRSKSPIFAFTVTAGLALTAVTGSATAVSIFRDSPSNKIATAVEGVVRSSRAIYSITLTVADYKYTLRRLPADSDEYLQRLTEVHSRSAKRILKLCESNKGFYVKAGQFVATLKLVPKEYSLALSSLQDKAVPCNFQEIKQVLTSNLGQNLTEIYLSFDEEPIAAASIAQVHHAVLKNHQEVAVKVQYPGLKQNMMLDTMIMSFLSKSVAKIFPEYRFDWLVYEFVKSISQELDFLQEAKNSERIAKNFKHNKMITIPTVFSEFTTTQVLTMQFCKGFKVDDVESLKRTNVSPEKVAKVLVEVFAEMIFVHGFIHGDPHPGNILVSPEGQNGFSLVLLDHGNCKTLDEAFRRDFCRLWEALILLDSNKIQELGKQFGVGKYAKFFPVIFTGRTSESKSGLGKGMSIQERQKLKQELKLLRLEDVTTFMGSLPPDFLTVLRTDGLIRSITLKLGAPQRVRLLAYAKYAVYGLGYKPTSEPDFVEKSVISRSVMLMSYLRLRLILELMELFQGMKKLKHTIYGFYGQLVGGITNSVKRITCSV", "length": 551, "header": "tr|F4ID59-1|F4ID59_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ID59-1" }, "isoforms": [ { "isoform_ac": "A0A1P8ATG0-1", "url": "https://www.uniprot.org/uniprotkb/F4ID59/entry#A0A1P8ATG0-1", "sequence": { "sequence": "MEILRKFKILGRSKSPIFAFTVTAGLALTAVTGSATAVSIFRDSPSNKIATAVEGVVRSSRAIYSITLTVADYKYTLRRLPADSDEYLQRLTEVHSRSAKRILKLCESNKGFYVKAGQFVATLKLVPKEYSLALSSLQDKAVPCNFQEIKQVLTSNLGQNLTEIYLSFDEEPIAAASIAQVHHAVLKNHQEVAVKVQYPGLKQNMMLDTMIMSFLSKSVAKIFPEYRFDWLVYEFVKSISQELDFLQEAKNSERIAKNFKHNKMITIPTVFSEFTTTQVLTMQFCKGFKVDDVESLKRTNVSPEKVAKVLVEVFAEMIFVHGFIHGDPHPGNILVSPEGQNGFSLVLLDHGNCKTLDEAFRRDFCRLWEALILLDSNKIQELGKQFGVGKYAKFFPVIFTGRTSESKSGLGKGMSIQERQKLKQELKLLRLEDVTTFMGSLPPDFLTVLRTEYNPRSSVI", "length": 460, "header": "tr|A0A1P8ATG0-1|F4ID59_ARATH Computationally mapped isoform of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ID59-1" }, "locus": { "chromosome": "1", "start_pos": 24546682, "end_pos": 24551144, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G65950.2", "url": "https://www.ensemblgenomes.org/id/AT1G65950.2" }, { "database": "Ensembl Peptide", "id": "AT1G65950.2", "url": "https://www.ensemblgenomes.org/id/AT1G65950.2" } ] } }, { "isoform_ac": "F4ID59-1", "url": "https://www.uniprot.org/uniprotkb/F4ID59/entry#F4ID59-1", "sequence": { "sequence": "MEILRKFKILGRSKSPIFAFTVTAGLALTAVTGSATAVSIFRDSPSNKIATAVEGVVRSSRAIYSITLTVADYKYTLRRLPADSDEYLQRLTEVHSRSAKRILKLCESNKGFYVKAGQFVATLKLVPKEYSLALSSLQDKAVPCNFQEIKQVLTSNLGQNLTEIYLSFDEEPIAAASIAQVHHAVLKNHQEVAVKVQYPGLKQNMMLDTMIMSFLSKSVAKIFPEYRFDWLVYEFVKSISQELDFLQEAKNSERIAKNFKHNKMITIPTVFSEFTTTQVLTMQFCKGFKVDDVESLKRTNVSPEKVAKVLVEVFAEMIFVHGFIHGDPHPGNILVSPEGQNGFSLVLLDHGNCKTLDEAFRRDFCRLWEALILLDSNKIQELGKQFGVGKYAKFFPVIFTGRTSESKSGLGKGMSIQERQKLKQELKLLRLEDVTTFMGSLPPDFLTVLRTDGLIRSITLKLGAPQRVRLLAYAKYAVYGLGYKPTSEPDFVEKSVISRSVMLMSYLRLRLILELMELFQGMKKLKHTIYGFYGQLVGGITNSVKRITCSV", "length": 551, "header": "tr|F4ID59-1|F4ID59_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ID59-1" }, "locus": { "chromosome": "1", "start_pos": 24546704, "end_pos": 24551144, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G65950.1", "url": "https://www.ensemblgenomes.org/id/AT1G65950.1" }, { "database": "Ensembl Peptide", "id": "AT1G65950.1", "url": "https://www.ensemblgenomes.org/id/AT1G65950.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 59, "end_pos": 59, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8ATG0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8ATG0" } ], "site_lbl": "Ser59" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ATG0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ATG0" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8ATG0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8ATG0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G65950", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G65950", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q06567-1", "protein_name": "ABC1 family protein MCP2", "gene_name": "MCP2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MMTKAFFNKLPFEVFRRYVRTGKSIPQRSPRTRKSLLVGGTIASAVVLYNFNDTFHDSVKHTALTTKRIAVVTQATTRCFYHYKRALNKSYENKKEREVALNKCHKMCALITLHALRSNGGIYIKLGQHIGAMTYLLPKEWTDTMIPLQDHCPESTYEEIDELFKEDLGTSIEDMFLEFNKTPIGVASLAQVHVAKLKNSDGKGSSVAVKCQHPSLKEFIPLDVMLTRTVFELLDVFFPDYPLTWLGDELQSSIYVELNFTKEAENAEKTRHYFSKFKKQTALKIPKVIESHKRILIMEYVGGKRLDDLEYIDSHGISRSEVSSCLSHIFNNMIFTPNVGIHCDPHGGNLAIRSVKPAKDNGYHNFEIVLFDHGLYRYPSTRTRRLYAKFWLSLLFDKDQTKMKKYAKGFANITDEQFPLLAAAITGRSIDAALNYDISTSRTQEEMDVMANGILEGTLLSDLMSILSRIPRVVLLILKTNDLTRHLDECLQNPLGPERTFLIMTQYCAKTVYDEKVERINSEYARWSIKWMWENLTNWIVYERRINQLYFYDFVLWWKKFIPKTWLSS", "length": 569 }, "evidence": [ { "id": "F4ID59", "url": "https://omabrowser.org/oma/group/F4ID59/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "F4ID59", "url": "https://www.uniprot.org/uniprotkb/F4ID59" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F4ID59", "url": "https://www.uniprot.org/uniprotkb/F4ID59" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F4ID59", "url": "https://www.uniprot.org/uniprotkb/F4ID59" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4ID59", "url": "https://www.uniprot.org/uniprotkb/F4ID59" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4ID59-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 551, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4ID59-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4ID59" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4ID59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ID59" }, { "id": "PF03109", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ABC1 atypical kinase-like", "eco_id": "ECO_0000259", "start_pos": 137, "end_pos": 381, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 59 ], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 }, { "start_pos": 300, "end_pos": 302 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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"kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4ID96-1", "uniprot_ac": "F4ID96", "uniprot_id": "F4ID96_ARATH", "mass": { "chemical_mass": 32994.0, "monoisotopic_mass": 32994.0 }, "refseq": { "ac": "NP_683473", "name": "no-apical-meristem-associated carboxy-terminal domain protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683473" }, "gene_names": [], "protein_names": [ { "name": "No-apical-meristem-associated carboxy-terminal domain protein", "type": "synonym", "evidence": [ { "id": "F4ID96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ID96/entry#names_and_taxonomy" } ] }, { "name": "no-apical-meristem-associated carboxy-terminal domain protein", "type": "synonym", "evidence": [ { "id": "NP_683473", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683473" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4ID96", "url": "https://www.uniprot.org/uniprotkb/F4ID96" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4ID96", "locus": {} } ], "crossref": [ { "id": "F4ID96", "url": "https://alphafold.ebi.ac.uk/entry/F4ID96", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G66235", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G66235", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "842939", "url": "https://www.ncbi.nlm.nih.gov/gene/842939", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G66235", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G66235", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SAHIQHC", "url": "https://omabrowser.org/oma/group/SAHIQHC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45125", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45125", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45125:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45125:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14303", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14303", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_683473", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683473", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G66235", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G66235", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AU49", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AU49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AU49-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AU49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ID96", "url": "https://www.uniprot.org/uniprotkb/F4ID96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ID96-1", "url": "https://www.uniprot.org/uniprotkb/F4ID96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSTGYSNEEDKFLCQVYMDISQDPIIGVYQSSDHFWDRVAESFENRKNPTWSKRSKKSLQCRLQTIEKASKKLHACIKLCENRRSSGASSDDIFNQAKEMLMQDKHFKSGWKFDHVWNIIRNFEKFKDGATQAKKVLNLCGLENPTLDSVSQASSGSFSFSLNLDDEDDIIGRSPYQRPIRVKKSKLKRKNDQILDVIKTFEEGNKQLMEQLKKTSAQRQQYLEMQSKSLALREQKEENKVLYRNLNSIEDPNLRAYLQSEQAKILRKRLDQQAASTSTSFV", "length": 284, "header": "tr|F4ID96-1|F4ID96_ARATH Isoform 1 of No-apical-meristem-associated carboxy-terminal domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4ID96-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AU49-1", "url": "https://www.uniprot.org/uniprotkb/F4ID96/entry#A0A1P8AU49-1", "sequence": { "sequence": "MHASNYVKIDVLVFNQAKEMLMQDKHFKSGWKFDHVWNIIRNFEKFKDGATQAKKVLNLCGLENPTLDSVSQASSGSFSFSLNLDDEDDIIGRSPYQRPIRVKKSKLKRKNDQILDVIKTFEEGNKQLMEQLKKTSAQRQQYLEMQSKSLALREQKEENKVLYRNLNSIEDPNLRAYLQSEQAKILRKRLDQQAASTSTSFV", "length": 202, "header": "tr|A0A1P8AU49-1|F4ID96_ARATH Computationally mapped isoform of No-apical-meristem-associated carboxy-terminal domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ID96-1" }, "locus": { "chromosome": "1", "start_pos": 24682907, "end_pos": 24683996, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G66235.2", "url": "https://www.ensemblgenomes.org/id/AT1G66235.2" }, { "database": "Ensembl Peptide", "id": "AT1G66235.2", "url": "https://www.ensemblgenomes.org/id/AT1G66235.2" } ] } }, { "isoform_ac": "F4ID96-1", "url": "https://www.uniprot.org/uniprotkb/F4ID96/entry#F4ID96-1", "sequence": { "sequence": "MPRSTGYSNEEDKFLCQVYMDISQDPIIGVYQSSDHFWDRVAESFENRKNPTWSKRSKKSLQCRLQTIEKASKKLHACIKLCENRRSSGASSDDIFNQAKEMLMQDKHFKSGWKFDHVWNIIRNFEKFKDGATQAKKVLNLCGLENPTLDSVSQASSGSFSFSLNLDDEDDIIGRSPYQRPIRVKKSKLKRKNDQILDVIKTFEEGNKQLMEQLKKTSAQRQQYLEMQSKSLALREQKEENKVLYRNLNSIEDPNLRAYLQSEQAKILRKRLDQQAASTSTSFV", "length": 284, "header": "tr|F4ID96-1|F4ID96_ARATH Isoform 1 of No-apical-meristem-associated carboxy-terminal domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4ID96-1" }, "locus": { "chromosome": "1", "start_pos": 24682931, "end_pos": 24683986, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G66235.1", "url": "https://www.ensemblgenomes.org/id/AT1G66235.1" }, { "database": "Ensembl Peptide", "id": "AT1G66235.1", "url": "https://www.ensemblgenomes.org/id/AT1G66235.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 278, "end_pos": 278, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8AU49", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8AU49" }, { "database": "iPTMnet", "id": "F4ID96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ID96" } ], "site_lbl": "Ser278" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AU49", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AU49" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AU49", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AU49" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G66235", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G66235", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4ID96", "url": "https://www.uniprot.org/uniprotkb/F4ID96" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4ID96-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 284, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4ID96-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4ID96" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4ID96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ID96" }, { "id": "PF14303", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14303" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "No apical meristem-associated C-terminal", "eco_id": "ECO_0000259", "start_pos": 113, "end_pos": 267, "start_aa": "Trp", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 278 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IE43-1", "uniprot_ac": "F4IE43", "uniprot_id": "F4IE43_ARATH", "mass": { "chemical_mass": 37167.0, "monoisotopic_mass": 37167.0 }, "refseq": {}, "gene_names": [ { "name": "F28B23.26", "type": "synonym", "evidence": [ { "id": "F4IE43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE43" } ] } ], "protein_names": [ { "name": "TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein", "type": "synonym", "evidence": [ { "id": "F4IE43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE43/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IE43", "url": "https://www.uniprot.org/uniprotkb/F4IE43" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IE43", "locus": {} } ], "crossref": [ { "id": "F4IE43", "url": "https://alphafold.ebi.ac.uk/entry/F4IE43", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G26200", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G26200", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "3766796", "url": "https://www.ncbi.nlm.nih.gov/gene/3766796", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006634", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006634", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G26200", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EVWKGFP", "url": "https://omabrowser.org/oma/group/EVWKGFP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AW96", "url": "https://www.orthodb.org/?gene=A0A1P8AW96", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AWB7", "url": "https://www.orthodb.org/?gene=A0A1P8AWB7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IE43", "url": "https://www.orthodb.org/?gene=F4IE43", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12560", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12560", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12560:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12560:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03798", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03798", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G26200", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G26200", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AW96", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AW96-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AWB7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AWB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AWB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AWB7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IE43", "url": "https://www.uniprot.org/uniprotkb/F4IE43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IE43-1", "url": "https://www.uniprot.org/uniprotkb/F4IE43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLKLLSRPDWDQESYPDSSDFLVLIFFAPFFLFLRLILDRCIFERVARRLVVPKGLCADSNERRKKVVKFKESAWKCLCSFSVEAFALYVTYKEPWFKDTRSFWLGPGDQVWPDQKIKLKMKGMYMFVGGLNVYAFFALFFWETRRSDFKVMLVHHIVTSFLIILSYVFRFARIGSVILALHEISDVFLEIGKMCKYSGAETMTSVSFVLFFLSWTTLRLIYYPFWILWSTSYESIKVKTEYWDKKHLMETGPPLILFYYVFNTLLYCLQILHIYWWILIYRVLISQIRAKGKVAKDIRSDSEGEDDEHQD", "length": 312, "header": "tr|F4IE43-1|F4IE43_ARATH Isoform 1 of TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IE43-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AW96-1", "url": "https://www.uniprot.org/uniprotkb/F4IE43/entry#A0A1P8AW96-1", "sequence": { "sequence": "MDLKLLSRPDWDQESYPDSSDFLVLIFFAPFFLFLRLILDRCIFERVARRLVVPKGLCADSNERRKKVVKFKESAWKCLCSFSVEAFALYVTYKEPWFKDTRSFWLGPGDQVWPDQKIKLKMKGMYMFVGGLNVYAFFALFFWETRRSDFKVMLVHHIVTSFLIILSYVFRFARIGSVILALHEISDVFLEIGKMCKYSGAETMTSVSFVLFFLSWTTLRLIYYPFWILWSTRFSTYICMNLCSYESIKVKTEYWDKKHLMETGPPLILFYYVFNTLLYCLQILHIYWWILIYRVLISQIRAKGKVAKDIRSDSEGEDDEHQD", "length": 323, "header": "tr|A0A1P8AW96-1|F4IE43_ARATH Computationally mapped isoform of TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IE43-1" }, "locus": { "chromosome": "1", "start_pos": 9063306, "end_pos": 9065320, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G26200.3", "url": "https://www.ensemblgenomes.org/id/AT1G26200.3" }, { "database": "Ensembl Peptide", "id": "AT1G26200.3", "url": "https://www.ensemblgenomes.org/id/AT1G26200.3" } ] } }, { "isoform_ac": "A0A1P8AWB7-1", "url": "https://www.uniprot.org/uniprotkb/F4IE43/entry#A0A1P8AWB7-1", "sequence": { "sequence": "MDLKLLSRPDWDQESYPDSSDFLVLIFFAPFFLFLRLILDRCIFERVARRLVVPKGLCADSNERRKKVVKFKESAWKCLCSFSVEAFALYVTYKEPWFKDTRSFWLGPGDQVWPDQKIKLKMKGMYMFVGGLNVYAFFALFFWETRRSDFKVMLVHHIVTSFLIILSYVFRFARIGSVILALHEISDVFLEIGKMCKYSGAETMTSVSFVLFFLSWTTLRLIYYPFWILWSTRFIL", "length": 236, "header": "tr|A0A1P8AWB7-1|F4IE43_ARATH Computationally mapped isoform of TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IE43-1" }, "locus": { "chromosome": "1", "start_pos": 9063306, "end_pos": 9065320, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G26200.2", "url": "https://www.ensemblgenomes.org/id/AT1G26200.2" }, { "database": "Ensembl Peptide", "id": "AT1G26200.2", "url": "https://www.ensemblgenomes.org/id/AT1G26200.2" } ] } }, { "isoform_ac": "F4IE43-1", "url": "https://www.uniprot.org/uniprotkb/F4IE43/entry#F4IE43-1", "sequence": { "sequence": "MDLKLLSRPDWDQESYPDSSDFLVLIFFAPFFLFLRLILDRCIFERVARRLVVPKGLCADSNERRKKVVKFKESAWKCLCSFSVEAFALYVTYKEPWFKDTRSFWLGPGDQVWPDQKIKLKMKGMYMFVGGLNVYAFFALFFWETRRSDFKVMLVHHIVTSFLIILSYVFRFARIGSVILALHEISDVFLEIGKMCKYSGAETMTSVSFVLFFLSWTTLRLIYYPFWILWSTSYESIKVKTEYWDKKHLMETGPPLILFYYVFNTLLYCLQILHIYWWILIYRVLISQIRAKGKVAKDIRSDSEGEDDEHQD", "length": 312, "header": "tr|F4IE43-1|F4IE43_ARATH Isoform 1 of TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IE43-1" }, "locus": { "chromosome": "1", "start_pos": 9063306, "end_pos": 9065320, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G26200.1", "url": "https://www.ensemblgenomes.org/id/AT1G26200.1" }, { "database": "Ensembl Peptide", "id": "AT1G26200.1", "url": "https://www.ensemblgenomes.org/id/AT1G26200.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AW96", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW96" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AW96", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AW96" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G26200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26200", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F4IE43", "url": "https://www.uniprot.org/uniprotkb/F4IE43" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F4IE43", "url": "https://www.uniprot.org/uniprotkb/F4IE43" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ceramide biosynthetic process", "id": "GO:0046513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046513", "evidence": [ { "database": "UniProtKB", "id": "F4IE43", "url": "https://www.uniprot.org/uniprotkb/F4IE43" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sphingosine N-acyltransferase activity", "id": "GO:0050291", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050291", "evidence": [ { "database": "UniProtKB", "id": "F4IE43", "url": "https://www.uniprot.org/uniprotkb/F4IE43" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IE43-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IE43-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IE43" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IE43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE43" }, { "id": "PS50922", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50922" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TLC", "eco_id": 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"RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180859" }, { "id": "F4IUT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUT4" } ] }, { "name": "T21L14_6", "type": "synonym", "evidence": [ { "id": "NP_180859", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180859" }, { "id": "F4IUT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUT4" } ] } ], "protein_names": [ { "name": "Ubiquitin-associated (UBA)/TS-N domain-containing protein-like protein", "type": "synonym", "evidence": [ { "id": "F4IUT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUT4/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin-associated (UBA)/TS-N domain-containing protein-like protein", "type": "synonym", "evidence": [ { "id": "NP_180859", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180859" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IUT4", "url": "https://www.uniprot.org/uniprotkb/F4IUT4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IUT4", "locus": {} } ], "crossref": [ { "id": "F4IUT4", "url": "https://alphafold.ebi.ac.uk/entry/F4IUT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G33000", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G33000", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd14273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14273", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14352", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14352", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "817862", "url": "https://www.ncbi.nlm.nih.gov/gene/817862", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050730", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050730", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G33000", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G33000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MPLSHDG", "url": "https://omabrowser.org/oma/group/MPLSHDG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23322", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23322", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23322:SF71", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23322:SF71", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14555", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14555", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_180859", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180859", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G33000", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G33000", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AX64", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AX64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AX64-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AX64-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IUT4", "url": "https://www.uniprot.org/uniprotkb/F4IUT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IUT4-1", "url": "https://www.uniprot.org/uniprotkb/F4IUT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKESRSPAQIGDEHLSPTAKADLIDRICAELGVCEEEALCYLDGFHWDFDSALEACRNQTSPFPPSLTVESTPVNANSASLTTPLMIDPLRSWNPPDEQSRNESIARFCYAVAGVSVEEARAYLERSNWNINLAVDSFLVERRATPLQKKSNPLRLDSKSRFLDYSKPLRIGRSSSDSMEVDSTGEQIPEAIPPLMASSQVNTQENQESTSVWPPMKTWVDRICHETKVSREEAFYYLEGSKWNFSRAVEACRSKTLPVVSASQESAEAPPNSPEQPSLLKNEWISSFCEAASTATREEAIYCLKVCNWDVHRAIGFYMEDFSEHQTSVAVNMSLKENRKLPLSSIELPSQSQFEASLGYLKEGSTSSLLEVDPTELKRSLEEAGEENAAVAIPRMTSSQVDGKGIEEDSSMETFPDPVAYQDRIIVGPRAGGTTITLTILLANTRSVNIPFRSNQTVRDIRDAIDELTPDYEKDYILQSMAEVVYMDPDITVHEISTGSTTLLQIYL", "length": 508, "header": "tr|F4IUT4-1|F4IUT4_ARATH Isoform 1 of Ubiquitin-associated (UBA)/TS-N domain-containing protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUT4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AX64-1", "url": "https://www.uniprot.org/uniprotkb/F4IUT4/entry#A0A1P8AX64-1", "sequence": { "sequence": "MKESRSPAQIGDEHLSPTAKADLIDRICAELGVCEEEALCYLDGFHWDFDSALEACRNQTSPFPPSLTVESTPVNANSASLTTPLMIDPLRSWNPPDEQSRNESIARFCYAVAGVSVEEARAYLERSNWNINLAVDSFLVERRATPLQKKSNPLRLDSKSRFLDYSKPLRIGRSSSDSMEVDSTGEQIPEAIPPLMASSQVNTQENQESTSVWPPMKTWVDRICHETKVSREEAFYYLEGSKWNFSRAVEACRSKTLPVVSASQESAEAPPNSPEQPSLLKNEWISSFCEAASTATREEAIYCLKVCNWDVHRAIGFYMEDFSEHQTSVAVNMSLKENRKLPLSSIELPSQSQFEASLGYLKEGSTSR", "length": 368, "header": "tr|A0A1P8AX64-1|F4IUT4_ARATH Computationally mapped isoform of Ubiquitin-associated (UBA)/TS-N domain-containing protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUT4-1" }, "locus": { "chromosome": "2", "start_pos": 14006135, "end_pos": 14008535, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G33000.2", "url": "https://www.ensemblgenomes.org/id/AT2G33000.2" }, { "database": "Ensembl Peptide", "id": "AT2G33000.2", "url": "https://www.ensemblgenomes.org/id/AT2G33000.2" } ] } }, { "isoform_ac": "F4IUT4-1", "url": "https://www.uniprot.org/uniprotkb/F4IUT4/entry#F4IUT4-1", "sequence": { "sequence": "MKESRSPAQIGDEHLSPTAKADLIDRICAELGVCEEEALCYLDGFHWDFDSALEACRNQTSPFPPSLTVESTPVNANSASLTTPLMIDPLRSWNPPDEQSRNESIARFCYAVAGVSVEEARAYLERSNWNINLAVDSFLVERRATPLQKKSNPLRLDSKSRFLDYSKPLRIGRSSSDSMEVDSTGEQIPEAIPPLMASSQVNTQENQESTSVWPPMKTWVDRICHETKVSREEAFYYLEGSKWNFSRAVEACRSKTLPVVSASQESAEAPPNSPEQPSLLKNEWISSFCEAASTATREEAIYCLKVCNWDVHRAIGFYMEDFSEHQTSVAVNMSLKENRKLPLSSIELPSQSQFEASLGYLKEGSTSSLLEVDPTELKRSLEEAGEENAAVAIPRMTSSQVDGKGIEEDSSMETFPDPVAYQDRIIVGPRAGGTTITLTILLANTRSVNIPFRSNQTVRDIRDAIDELTPDYEKDYILQSMAEVVYMDPDITVHEISTGSTTLLQIYL", "length": 508, "header": "tr|F4IUT4-1|F4IUT4_ARATH Isoform 1 of Ubiquitin-associated (UBA)/TS-N domain-containing protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUT4-1" }, "locus": { "chromosome": "2", "start_pos": 14006135, "end_pos": 14008537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G33000.1", "url": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IPL5-1", "uniprot_ac": "F4IPL5", "uniprot_id": "F4IPL5_ARATH", "mass": { "chemical_mass": 70820.0, "monoisotopic_mass": 70820.0 }, "refseq": { "ac": "NP_179401", "name": "transmembrane/coiled-coil protein (DUF726)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179401" }, "gene_names": [ { "name": "T27K22.3", "type": "synonym", "evidence": [ { "id": "NP_179401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179401" }, { "id": "F4IPL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPL5" } ] }, { "name": "T27K22_3", "type": "synonym", "evidence": [ { "id": "NP_179401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179401" }, { "id": "F4IPL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPL5" } ] } ], "protein_names": [ { "name": "Transmembrane/coiled-coil protein (DUF726)", "type": "synonym", "evidence": [ { "id": "F4IPL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPL5/entry#names_and_taxonomy" } ] }, { "name": "transmembrane/coiled-coil protein (DUF726)", "type": "synonym", "evidence": [ { "id": "NP_179401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179401" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IPL5", "url": "https://www.uniprot.org/uniprotkb/F4IPL5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IPL5", "locus": {} } ], "crossref": [ { "id": "F4IPL5", "url": "https://alphafold.ebi.ac.uk/entry/F4IPL5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G18100", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G18100", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "816322", "url": "https://www.ncbi.nlm.nih.gov/gene/816322", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G18100", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G18100", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PIQDENW", "url": "https://omabrowser.org/oma/group/PIQDENW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR17920", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17920", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17920:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17920:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05277", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05277", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_179401", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179401", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G18100", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G18100", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AXD2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXD2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXD9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXI8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IPL5", "url": "https://www.uniprot.org/uniprotkb/F4IPL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IPL5-1", "url": "https://www.uniprot.org/uniprotkb/F4IPL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVEATSNLTPSQRYAASALFAIALNQAQISQSKPLGIPATGSTGEPISSDSDPISDEADLWVHEVSGLLRPVLRCLQIDSSAWHGLEEIAASTQAKDHIGAFIKLLSEDVSDDDDDSSEMVEKETALAKAADAMDQNIRSSSLSVESKMEKHVEFENECRDKYSVPEAQSGAEVKETESHGEGEIRDGGHNLGIVEHEKPVGEVALLSHERKINVLYELLSACLADKHEENEICTRRRKGYDARHHVALRLLATWFDFQWIKMEAVETMSACSAMALQKSSGNKEEESLSPNSEWAKWKRGGIVGAAALTGGTLMAITGGLAAPAIAAGFGALAPTLGTIVPVIGASGFAAAAEAAGTVAGSVAVAASFGAAGAGLTGTKMARRTGDIEEFEFKAIGENHNQGRLAVEILVAGFVLKEEDFVKPWEGLTSNLERYTVQWESENIIAVSTAIQDWLTSRVAMELMRQGAMRTVLNSLLAAMVWPATILVAADFIDSRWSIAIDRSDKAGKLLAEALRKGLQGNRPVTLVGFSLGARVVFKCLQTLAETEKNAEIVERVVLLGAPISIKNENWRDVRKMVAGRFINVYATNDWTLGVAFRASLLSQGLAGIQPVCIPGIEDVDVTDMVEGHSSYLWKTQQILERLELDNSYPVFRNTL", "length": 656, "header": "tr|F4IPL5-1|F4IPL5_ARATH Isoform 1 of Transmembrane/coiled-coil protein (DUF726) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPL5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AXD2-1", "url": "https://www.uniprot.org/uniprotkb/F4IPL5/entry#A0A1P8AXD2-1", "sequence": { "sequence": "MVEATSNLTPSQRYAASALFAIALNQAQISQSKPLGIPATGSTGEPISSDSDPISDEADLWVHEVSGLLRPVLRCLQIDSSAWHGLEEIAASTQAKDHIGAFIKLLSEDVSDDDDDSSEMVEKETALAKAADAMDQNIRSSSLSVESKMEKHVEFENECRDKYSVPEAQSGAEVKETESHGEGEIRDGGHNLGIVEHEKPVGEVALLSHERKINVLYELLSACLADKHEENEICTRRRKGYDARHHVALRLLATWFDFQWIKMEAVETMSACSAMALQKSSGNKEEESLSPNSEWAKWKRGGIVGAAALTGGTLMAITGGLAAPAIAAGFGALAPTLGTIVPVIGASGFAAAAEAAGTVAGSVAVAASFGAAGAGLTGTKMARRTGDIEEFEFKAIGENHNQGRLAVEILVAGFVLKEEDFVKPWEGLTSNLERYTVQWESENIIAVSTAIQDWLTSRVAMELMRQGAMRTVLNSLLAAMVWPATILVAADFIDSRWSIAIDRSDKAGKLLAEALRKGLQGNRPVTLVGFSLGARVVFKCLQTLAETEKNAEIVERVVLLGAPISIKNENWRDVRKMVAGRFINVYATNDWTLGVAFRARISWNPTGLYTGD", "length": 612, "header": "tr|A0A1P8AXD2-1|F4IPL5_ARATH Computationally mapped isoform of Transmembrane/coiled-coil protein (DUF726) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPL5-1" }, "locus": { "chromosome": "2", "start_pos": 7867828, "end_pos": 7871798, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G18100.2", "url": "https://www.ensemblgenomes.org/id/AT2G18100.2" }, { "database": "Ensembl Peptide", "id": "AT2G18100.2", "url": "https://www.ensemblgenomes.org/id/AT2G18100.2" } ] } }, { "isoform_ac": "A0A1P8AXD9-1", "url": "https://www.uniprot.org/uniprotkb/F4IPL5/entry#A0A1P8AXD9-1", "sequence": { "sequence": "MVEATSNLTPSQRYAASALFAIALNQAQISQSKPLGIPATGSTGEPISSDSDPISDEADLWVHEVSGLLRPVLRCLQIDSSAWHGLEEIAASTQAKDHIGAFIKLLSEDVSDDDDDSSEMVEKETALAKAADAMDQNIRSSSLSVESKMEKHVEFENECRDKYSVPEAQSGAEVKETESHGEGEIRDGGHNLGIVEHEKPVGEVALLSHERKINVLYELLSACLADKHEENEICTRRRKGYDARHHVALRLLATWFDFQWIKMEAVETMSACSAMALQKSSGNKEEESLSPNSEWAKWKRGGIVGAAALTGGTLMAITGGLAAPAIAAGFGALAPTLGTIVPVIGASGFAAAAEAAGTVAGSVAVAASFGAAGAGLTGTKMARRTGDIEEFEFKAIGENHNQGRLAVEILVAGFVLKEEDFVKPWEGLTSNLERYTVQWESENIIAVSTAIQDWLTSRVAMELMRQGAMRTVLNSLLAAMVWPATILVAADFIDSRWSIAIDR", "length": 503, "header": "tr|A0A1P8AXD9-1|F4IPL5_ARATH Computationally mapped isoform of Transmembrane/coiled-coil protein (DUF726) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPL5-1" }, "locus": { "chromosome": "2", "start_pos": 7867828, "end_pos": 7870325, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G18100.3", "url": "https://www.ensemblgenomes.org/id/AT2G18100.3" }, { "database": "Ensembl Peptide", "id": "AT2G18100.3", "url": "https://www.ensemblgenomes.org/id/AT2G18100.3" } ] } }, { "isoform_ac": "A0A1P8AXI8-1", "url": "https://www.uniprot.org/uniprotkb/F4IPL5/entry#A0A1P8AXI8-1", "sequence": { "sequence": "MVEKETALAKAADAMDQNIRSSSLSVESKMEKHVEFENECRDKYSVPEAQSGAEVKETESHGEGEIRDGGHNLGIVEHEKPVGEVALLSHERKINVLYELLSACLADKHEENEICTRRRKGYDARHHVALRLLATWFDFQWIKMEAVETMSACSAMALQKSSGNKEEESLSPNSEWAKWKRGGIVGAAALTGGTLMAITGGLAAPAIAAGFGALAPTLGTIVPVIGASGFAAAAEAAGTVAGSVAVAASFGAAGAGLTGTKMARRTGDIEEFEFKAIGENHNQGRLAVEILVAGFVLKEEDFVKPWEGLTSNLERYTVQWESENIIAVSTAIQDWLTSRVAMELMRQGAMRTVLNSLLAAMVWPATILVAADFIDSRWSIAIDRSDKAGKLLAEALRKGLQGNRPVTLVGFSLGARVVFKCLQTLAETEKNAEIVERVVLLGAPISIKNENWRDVRKMVAGRFINVYATNDWTLGVAFRASLLSQGLAGIQPVCIPGIEDVDVTDMVEGHSSYLWKTQQILERLELDNSYPVFRNTL", "length": 537, "header": "tr|A0A1P8AXI8-1|F4IPL5_ARATH Computationally mapped isoform of Transmembrane/coiled-coil protein (DUF726) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPL5-1" }, "locus": { "chromosome": "2", "start_pos": 7868211, "end_pos": 7871642, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G18100.4", "url": "https://www.ensemblgenomes.org/id/AT2G18100.4" }, { "database": "Ensembl Peptide", "id": "AT2G18100.4", "url": "https://www.ensemblgenomes.org/id/AT2G18100.4" } ] } }, { "isoform_ac": "F4IPL5-1", "url": "https://www.uniprot.org/uniprotkb/F4IPL5/entry#F4IPL5-1", "sequence": { "sequence": "MVEATSNLTPSQRYAASALFAIALNQAQISQSKPLGIPATGSTGEPISSDSDPISDEADLWVHEVSGLLRPVLRCLQIDSSAWHGLEEIAASTQAKDHIGAFIKLLSEDVSDDDDDSSEMVEKETALAKAADAMDQNIRSSSLSVESKMEKHVEFENECRDKYSVPEAQSGAEVKETESHGEGEIRDGGHNLGIVEHEKPVGEVALLSHERKINVLYELLSACLADKHEENEICTRRRKGYDARHHVALRLLATWFDFQWIKMEAVETMSACSAMALQKSSGNKEEESLSPNSEWAKWKRGGIVGAAALTGGTLMAITGGLAAPAIAAGFGALAPTLGTIVPVIGASGFAAAAEAAGTVAGSVAVAASFGAAGAGLTGTKMARRTGDIEEFEFKAIGENHNQGRLAVEILVAGFVLKEEDFVKPWEGLTSNLERYTVQWESENIIAVSTAIQDWLTSRVAMELMRQGAMRTVLNSLLAAMVWPATILVAADFIDSRWSIAIDRSDKAGKLLAEALRKGLQGNRPVTLVGFSLGARVVFKCLQTLAETEKNAEIVERVVLLGAPISIKNENWRDVRKMVAGRFINVYATNDWTLGVAFRASLLSQGLAGIQPVCIPGIEDVDVTDMVEGHSSYLWKTQQILERLELDNSYPVFRNTL", "length": 656, "header": "tr|F4IPL5-1|F4IPL5_ARATH Isoform 1 of Transmembrane/coiled-coil protein (DUF726) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPL5-1" }, "locus": { "chromosome": "2", "start_pos": 7867828, "end_pos": 7871801, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G18100.1", "url": "https://www.ensemblgenomes.org/id/AT2G18100.1" }, { "database": "Ensembl Peptide", "id": "AT2G18100.1", "url": "https://www.ensemblgenomes.org/id/AT2G18100.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 111, "end_pos": 111, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8AXD9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8AXD9" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "iPTMnet", "id": "F4IPL5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IPL5" } ], "site_lbl": "Ser111" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AXD2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXD2" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8AXD9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8AXD9" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8AXD9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8AXD9" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AXD2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXD2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8AXD9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8AXD9" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT2G18100", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G18100", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4IPL5", "url": "https://www.uniprot.org/uniprotkb/F4IPL5" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4IPL5", "url": "https://www.uniprot.org/uniprotkb/F4IPL5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"authors" ] } ] }, { "uniprot_canonical_ac": "F4IMD9-1", "uniprot_ac": "F4IMD9", "uniprot_id": "F4IMD9_ARATH", "mass": { "chemical_mass": 49845.0, "monoisotopic_mass": 49845.0 }, "refseq": { "ac": "NP_179291", "name": "Major facilitator superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179291" }, "gene_names": [ { "name": "F6P23.2", "type": "synonym", "evidence": [ { "id": "NP_179291", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179291" }, { "id": "F4IMD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IMD9" } ] }, { "name": "F6P23_2", "type": "synonym", "evidence": [ { "id": "NP_179291", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179291" }, { "id": "F4IMD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IMD9" } ] } ], "protein_names": [ { "name": "Major facilitator superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_179291", "database": 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"categories": [ "Protein Classification" ] }, { "id": "816202", "url": "https://www.ncbi.nlm.nih.gov/gene/816202", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G16990", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G16990", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GMSGLCS", "url": "https://omabrowser.org/oma/group/GMSGLCS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23504", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23504", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23504:SF95", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23504:SF95", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_179291", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179291", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G16990", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G16990", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AXG6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXG7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXI4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXL3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AXL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXL3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMD9", "url": "https://www.uniprot.org/uniprotkb/F4IMD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMD9-1", "url": "https://www.uniprot.org/uniprotkb/F4IMD9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVCEGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFFVGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYSSLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITIVGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVMPSVCGIASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLLCISLSSLIGFFQSLLIKDVPTPPLNKAINKTSGEEV", "length": 456, "header": "tr|F4IMD9-1|F4IMD9_ARATH Isoform 1 of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMD9-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AXG6-1", "url": "https://www.uniprot.org/uniprotkb/F4IMD9/entry#A0A1P8AXG6-1", "sequence": { "sequence": "MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVCEGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFFVGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYSSLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITIVGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVMPSVCGIASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLLCISLSSVYMNISSIKTNFDLIVYEL", "length": 445, "header": "tr|A0A1P8AXG6-1|F4IMD9_ARATH Computationally mapped isoform of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMD9-1" }, "locus": { "chromosome": "2", "start_pos": 7382822, "end_pos": 7387946, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G16990.7", "url": "https://www.ensemblgenomes.org/id/AT2G16990.7" }, { "database": "Ensembl Peptide", "id": "AT2G16990.7", "url": "https://www.ensemblgenomes.org/id/AT2G16990.7" } ] } }, { "isoform_ac": "A0A1P8AXG7-1", "url": "https://www.uniprot.org/uniprotkb/F4IMD9/entry#A0A1P8AXG7-1", "sequence": { "sequence": "MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVCEGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFFVGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYSSLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITIVGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVSQSKLGTSFYVFSQYDLLLVFSSIFAGSLSHHCVCTWSLICDAIGLWYCLETSWTW", "length": 401, "header": "tr|A0A1P8AXG7-1|F4IMD9_ARATH Computationally mapped isoform of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMD9-1" }, "locus": { "chromosome": "2", "start_pos": 7382805, "end_pos": 7387976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G16990.5", "url": "https://www.ensemblgenomes.org/id/AT2G16990.5" }, { "database": "Ensembl Peptide", "id": "AT2G16990.5", "url": "https://www.ensemblgenomes.org/id/AT2G16990.5" } ] } }, { "isoform_ac": "A0A1P8AXI4-1", "url": "https://www.uniprot.org/uniprotkb/F4IMD9/entry#A0A1P8AXI4-1", "sequence": { "sequence": "MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVCEGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFFVGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYSSLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITIVGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVMPSVCGIASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLTGL", "length": 404, "header": "tr|A0A1P8AXI4-1|F4IMD9_ARATH Computationally mapped isoform of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMD9-1" }, "locus": { "chromosome": "2", "start_pos": 7382822, "end_pos": 7387946, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G16990.6", "url": "https://www.ensemblgenomes.org/id/AT2G16990.6" }, { "database": "Ensembl Peptide", "id": "AT2G16990.6", "url": "https://www.ensemblgenomes.org/id/AT2G16990.6" } ] } }, { "isoform_ac": "A0A1P8AXL3-1", "url": "https://www.uniprot.org/uniprotkb/F4IMD9/entry#A0A1P8AXL3-1", "sequence": { "sequence": "MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFFVGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYSSLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITIVGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVMPSVCGIASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLLCISLSSLIGFFQSLLIKDVPTPPLNKAINKTSGEEV", "length": 429, "header": "tr|A0A1P8AXL3-1|F4IMD9_ARATH Computationally mapped isoform of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMD9-1" }, "locus": { "chromosome": "2", "start_pos": 7382859, "end_pos": 7387959, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G16990.8", "url": "https://www.ensemblgenomes.org/id/AT2G16990.8" }, { "database": "Ensembl Peptide", "id": "AT2G16990.8", "url": "https://www.ensemblgenomes.org/id/AT2G16990.8" } ] } }, { "isoform_ac": "F4IMD9-1", "url": "https://www.uniprot.org/uniprotkb/F4IMD9/entry#F4IMD9-1", "sequence": { "sequence": "MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVCEGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFFVGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYSSLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITIVGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVMPSVCGIASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLLCISLSSLIGFFQSLLIKDVPTPPLNKAINKTSGEEV", "length": 456, "header": "tr|F4IMD9-1|F4IMD9_ARATH Isoform 1 of Major facilitator superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMD9-1" }, "locus": { "chromosome": "2", "start_pos": 7382805, "end_pos": 7387976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G16990.2", "url": "https://www.ensemblgenomes.org/id/AT2G16990.2" }, { "database": "Ensembl Peptide", "id": "AT2G16990.2", "url": "https://www.ensemblgenomes.org/id/AT2G16990.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 441, "start_aa": "Thr", "end_pos": 441, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr441", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4ITI2-1", "uniprot_ac": "F4ITI2", "uniprot_id": "F4ITI2_ARATH", "mass": { "chemical_mass": 44124.0, "monoisotopic_mass": 44124.0 }, "refseq": {}, "gene_names": [ { "name": "F6F22.8", "type": "synonym", "evidence": [ { "id": "F4ITI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ITI2" } ] }, { "name": "F6F22_8", "type": "synonym", "evidence": [ { "id": "F4ITI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ITI2" } ] } ], "protein_names": [ { "name": "NYN domain-containing protein", "type": "recommended", "evidence": [ { "id": "F4ITI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ITI2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4ITI2", "url": "https://www.uniprot.org/uniprotkb/F4ITI2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4ITI2", "locus": {} } ], "crossref": [ { "id": "F4ITI2", "url": "https://alphafold.ebi.ac.uk/entry/F4ITI2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G19890", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G19890", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd10910", "url": 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"MFMDICFFTLNNPVEYPKRSNLVVMARSYNLEVDQLKVDKPLVFKIEMLDGFLKALRTRGYNVLLAEPDDSYRRSVWLWPSLAYGGNPIQHSVLTTTCHIGYVVSVIAGTCIFWDVEDFPIPNGIDTTDKVILNIKSALAKTGYDGKVSIVAYYEKNKILDDFHLVPAGDKSSREYREFSDVLQLLSGRGYNVVLALPDVAAYLRSAFLLESMKQITSFLPRGSFFGCILAADRLENLCSPFPSSHQSQRSQLFQPVPLLHQFLPLLELSVSRTKKPELIRVLQALRLKDHNVLLAQPDHNNVEAAVLIHTSVSSSVWRSRSLLDRGILIKQTGNSQHDETCACSGCLQAVENKLAKKRKKQQERKKRKKQKQQKKFKVTTTTKGDTESN", "length": 390, "header": "tr|F4ITI2-1|F4ITI2_ARATH Isoform 1 of NYN domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ITI2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AXX0-1", "url": "https://www.uniprot.org/uniprotkb/F4ITI2/entry#A0A1P8AXX0-1", "sequence": { "sequence": "MFMDICFFTLNNPVEYPKRSNLVVMARSYNLEVDQLKVDKPLVFKIEMLDGFLKALRTRGYNVLLAEPDDSYRRSVWLWPSLAYGGNPIQHSVLTTTCHSTCIFWDVEDFPIPNGIDTTDKVILNIKSALAKTGYDGKVSIVAYYEKNKILDDFHLVPAGDKSSREYREFSDVLQLLSGRGYNVVLALPDVAAYLRSAFLLESMKQITSFLPRGSFFGCILAADRLENLCSPFPSSHQSQRSQLFQPVPLLHQFLPLLELSVSRTKKPELIRVLQALRLKDHNVLLAQPDHNNVEAAVLIHTSVSSSVWRSRSLLDRGILIKQTGNSQHDETCACSGCLQAVENKLAKKRKKQQERKKRKKQKQQKKFKVTTTTKGDTESN", "length": 381, "header": "tr|A0A1P8AXX0-1|F4ITI2_ARATH Computationally mapped isoform of NYN domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ITI2-1" }, "locus": { "chromosome": "2", "start_pos": 8587244, "end_pos": 8589637, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G19890.2", "url": "https://www.ensemblgenomes.org/id/AT2G19890.2" }, { "database": "Ensembl Peptide", "id": "AT2G19890.2", "url": "https://www.ensemblgenomes.org/id/AT2G19890.2" } ] } }, { "isoform_ac": "F4ITI2-1", "url": "https://www.uniprot.org/uniprotkb/F4ITI2/entry#F4ITI2-1", 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"publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AXX0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXX0" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes 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"database": "Ensembl Transcript", "id": "AT2G46915.1", "url": "https://www.ensemblgenomes.org/id/AT2G46915.1" }, { "database": "Ensembl Peptide", "id": "AT2G46915.1", "url": "https://www.ensemblgenomes.org/id/AT2G46915.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AXY3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AXY3" } ], 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"NP_182179", "name": "transducin family protein / WD-40 repeat family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_182179" }, "gene_names": [ { "name": "F13A10.9", "type": "synonym", "evidence": [ { "id": "NP_182179", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_182179" }, { "id": "F4IJ68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IJ68" } ] } ], "protein_names": [ { "name": "Transducin family protein / WD-40 repeat family protein", "type": "synonym", "evidence": [ { "id": "F4IJ68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IJ68/entry#names_and_taxonomy" } ] }, { "name": "transducin family protein / WD-40 repeat family protein", "type": "synonym", "evidence": [ { "id": "NP_182179", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_182179" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IJ68", "url": "https://www.uniprot.org/uniprotkb/F4IJ68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IJ68", "locus": {} } ], "crossref": [ { "id": "F4IJ68", "url": "https://alphafold.ebi.ac.uk/entry/F4IJ68", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G46560", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G46560", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "819268", "url": "https://www.ncbi.nlm.nih.gov/gene/819268", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022033", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022033", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052208", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052208", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G46560", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G46560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SFAVVCP", "url": "https://omabrowser.org/oma/group/SFAVVCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13950", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13950", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13950:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13950:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12234", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12234", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_182179", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_182179", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G46560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G46560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AY28", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AY28-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AY83", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AY83-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IJ68", "url": "https://www.uniprot.org/uniprotkb/F4IJ68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IJ68-1", "url": "https://www.uniprot.org/uniprotkb/F4IJ68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRYRIQLKPSGLERGSGDPRTDRIDHLPLRQLRSEIVPPAPTRSQSSIDWLPDFANYSWLAYGASTLVVISHLPSPLRGEDSTNGPFFRQILEVSGEPVTAVCWSPVTPSVGELAVGSGNYIFLFARDLKGSFCWSQNAILVQETIVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSGDHLQDLVSSTWSFEGPFATATSWRKFPAECDDAGKSVLAYYSDGESYHNFELPHPQRISMIQWRPMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHKKSFCVAAVIEINQVLDGCLGRDLFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKCEWLVGYGPGNFATLWAVHCLDDISPMRFPRVTLWAKQESNEIGAGSLSLASATGSSDRLPLKKVSVLRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSSLLKCIDGKVLYLDGHGGKILQVASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWKPCGRLQNQEFRLKYTSLCWAPSSLKDERFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICTIPFTVNSPLQSGPTSIFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFDALSWSVTLHHFDTAGSTCDCHFHDFDSIGLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPSGRDLENGVNSESQAYTIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQNPVSAISLTDSGHKIAALCTESHSKAARAVSIWEIVHLIDSGVFILEDKVHVDAEVVAVRWSTTGNDQLLLGVCTQIEMRVYGIARQPCKSTSFAAYDYSSEAQIWQCFAVTRTFSAIHDLWWGPKAMTCLVHNDYISLHGQWLAVVDKKQKIDNYPEIFASNLPNLVNATEEGRDSEFLSDSGTNDINEADTTSTSRGCIPLPSTSNAIDDGQVNSMSLIGTAYGSNTIDDIMSMGHMVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAEYITSSDTSEKGYAVKSVLCPDILLSKYYEGSLSNGPNPKDFQWGGTSGSMLQYSQFQSGLQSKFNMESYSPNSPATDLEFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDEPGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNESSWQQMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNLQDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMAGCLENPATESSTVSSNHVSFVDPSIGLYCLMLATKNSVKNALGERTASTLSRWASLMAATAFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHTTQGVFDHSVPHSSNWVSSGVSSTVDTHFRLGLAVQFLSMILREATAPLMNSEVVSCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHTDEDLLQYSALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGPDPKWSNALRFYFQGILESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFRMVQPLVISYFNGHMPYEVDLESVKRVYHQEASVSVPDASDVGVNSKFSSVVENHGVGYPVYSIPEDERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDIVCVTEKIMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLECQGSQANFLNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDWSDMYREVIRKNELYVPCNQDGRSSNEVASLANHASNSSPKAAVTANENSAFQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSDADWPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGKADRVPGYSGLGAIADPGSFFTQIRRWLGVSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPTMPLFLVGSSNTHIYLWEFGNERATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAALDGTVCTWQSEVGGRSNIHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWDTLAPPSTSQASINCHEGGARSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKMKKQRNPDGGSSTDGDQNKNGMLWYIPKAHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPNSRGYGGIIRAGVTDIQVCPNGFITCGGDGTVKFVSLVDSSYGDAK", "length": 2513, "header": "tr|F4IJ68-1|F4IJ68_ARATH Isoform 1 of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IJ68-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AY28-1", "url": "https://www.uniprot.org/uniprotkb/F4IJ68/entry#A0A1P8AY28-1", "sequence": { "sequence": "MPETSHVAISLVTDRIDHLPLRQLRSEIVPPAPTRSQSSIDWLPDFANYSWLAYGASTLVVISHLPSPLRGEDSTNGPFFRQILEVSGEPVTAVCWSPVTPSVGELAVGSGNYIFLFARDLKGSFCWSQNAILVQETIVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSGDHLQDLVSSTWSFEGPFATATSWRKFPAECDDAGKSVLAYYSDGESYHNFELPHPQRISMIQWRPMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHKKSFCVAAVIEINQVLDGCLGRDLFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKCEWLVGYGPGNFATLWAVHCLDDISPMRFPRVTLWAKQESNEIGAGSLSLASATGSSDRLPLKKVSVLRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSSLLKCIDGKVLYLDGHGGKILQVASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWKPCGRLQNQEFRLKYTSLCWAPSSLKDERFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICTIPFTVNSPLQSGPTSIFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFDALSWSVTLHHFDTAGSTCDCHFHDFDSIGLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPSGRDLENGVNSESQAYTIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQNPVSAISLTDSGHKIAALCTESHSKAARAVSIWEIVHLIDSGVFILEDKVHVDAEVVAVRWSTTGNDQLLLGVCTQIEMRVYGIARQPCKSTSFAAYDYSSEAQIWQCFAVTRTFSAIHDLWWGPKAMTCLVHNDYISLHGQWLAVVDKKQKIDNYPEIFASNLPNLVNATEEGRDSEFLSDSGTNDINEADTTSTSRGCIPLPSTSNAIDDGQVNSMSLIGTAYGSNTIDDIMSMGHMVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAEYITSSDTSEKGYAVKSVLCPDILLSKYYEGSLSNGPNPKDFQWGGTSGSMLQYSQFQSGLQSKFNMESYSPNSPATDLEFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDEPGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNESSWQQMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNLQDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMAGCLENPATESSTVSSNHVSFVDPSIGLYCLMLATKNSVKNALGERTASTLSRWASLMAATAFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHTTQGVFDHSVPHSSNWVSSGVSSTVDTHFRLGLAVQFLSMILREATAPLMNSEVVSCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHTDEDLLQYSALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGPDPKWSNALRFYFQGILESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFRMVQPLVISYFNGHMPYEVDLESVKRVYHQEASVSVPDASDVGVNSKFSSVVENHGVGYPVYSIPEDERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDIVCVTEKIMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLECQGSQANFLNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDWSDMYREVIRKNELYVPCNQDGRSSNEVASLANHASNSSPKAAVTANENSAFQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSDADWPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGKADRVPGYSGLGAIADPGSFFTQIRRWLGVSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPTMPLFLVGSSNTHIYLWEFGNERATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAALDGTVCTWQSEVGGRSNIHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWDTLAPPSTSQASINCHEGGARSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKMKKQRNPDGGSSTDGDQNKNGMLWYIPKAHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPNSRGYGGIIRAGVTDIQVCPNGFITCGGDGTVKFVSLVDSSYGDAK", "length": 2505, "header": "tr|A0A1P8AY28-1|F4IJ68_ARATH Computationally mapped isoform of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IJ68-1" }, "locus": { "chromosome": "2", "start_pos": 19115322, "end_pos": 19125752, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G46560.2", "url": "https://www.ensemblgenomes.org/id/AT2G46560.2" }, { "database": "Ensembl Peptide", "id": "AT2G46560.2", "url": "https://www.ensemblgenomes.org/id/AT2G46560.2" } ] } }, { "isoform_ac": "A0A1P8AY83-1", "url": "https://www.uniprot.org/uniprotkb/F4IJ68/entry#A0A1P8AY83-1", "sequence": { "sequence": "MIQWRPMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHKKSFCVAAVIEINQVLDGCLGRDLFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKCEWLVGYGPGNFATLWAVHCLDDISPMRFPRVTLWAKQESNEIGAGSLSLASATGSSDRLPLKKVSVLRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSSLLKCIDGKVLYLDGHGGKILQVASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWKPCGRLQNQEFRLKYTSLCWAPSSLKDERFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICTIPFTVNSPLQSGPTSIFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFDALSWSVTLHHFDTAGSTCDCHFHDFDSIGLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPSGRDLENGVNSESQAYTIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQNPVSAISLTDSGHKIAALCTESHSKAARAVSIWEIVHLIDSGVFILEDKVHVDAEVVAVRWSTTGNDQLLLGVCTQIEMRVYGIARQPCKSTSFAAYDYSSEAQIWQCFAVTRTFSAIHDLWWGPKAMTCLVHNDYISLHGQWLAVVDKKQKIDNYPEIFASNLPNLVNATEEGRDSEFLSDSGTNDINEADTTSTSRGCIPLPSTSNAIDDGQVNSMSLIGTAYGSNTIDDIMSMGHMVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAEYITSSDTSEKGYAVKSVLCPDILLSKYYEGSLSNGPNPKDFQWGGTSGSMLQYSQFQSGLQSKFNMESYSPNSPATDLEFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDEPGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNESSWQQMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNLQDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMAGCLENPATESSTVSSNHVSFVDPSIGLYCLMLATKNSVKNALGERTASTLSRWASLMAATAFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHTTQGVFDHSVPHSSNWVSSGVSSTVDTHFRLGLAVQFLSMILREATAPLMNSEVVSCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHTDEDLLQYSALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGPDPKWSNALRFYFQGILESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFRMVQPLVISYFNGHMPYEVDLESVKRVYHQEASVSVPDASDVGVNSKFSSVVENHGVGYPVYSIPEDERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDIVCVTEKIMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLECQGSQANFLNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDWSDMYREVIRKNELYVPCNQDGRSSNEVASLANHASNSSPKAAVTANENSAFQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSDADWPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGKADRVPGYSGLGAIADPGSFFTQIRRWLGVSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPTMPLFLVGSSNTHIYLWEFGNERATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAALDGTVCTWQSEVGGRSNIHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWDTLAPPSTSQASINCHEGGARSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKMKKQRNPDGGSSTDGDQNKNGMLWYIPKAHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPNSRGYGGIIRAGVTDIQVCPNGFITCGGDGTVKFVSLVDSSYGDAK", "length": 2270, "header": "tr|A0A1P8AY83-1|F4IJ68_ARATH Computationally mapped isoform of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IJ68-1" }, "locus": { "chromosome": "2", "start_pos": 19115322, "end_pos": 19125752, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G46560.3", "url": "https://www.ensemblgenomes.org/id/AT2G46560.3" }, { "database": "Ensembl Peptide", "id": "AT2G46560.3", "url": "https://www.ensemblgenomes.org/id/AT2G46560.3" } ] } }, { "isoform_ac": "F4IJ68-1", "url": "https://www.uniprot.org/uniprotkb/F4IJ68/entry#F4IJ68-1", "sequence": { "sequence": "MRYRIQLKPSGLERGSGDPRTDRIDHLPLRQLRSEIVPPAPTRSQSSIDWLPDFANYSWLAYGASTLVVISHLPSPLRGEDSTNGPFFRQILEVSGEPVTAVCWSPVTPSVGELAVGSGNYIFLFARDLKGSFCWSQNAILVQETIVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSGDHLQDLVSSTWSFEGPFATATSWRKFPAECDDAGKSVLAYYSDGESYHNFELPHPQRISMIQWRPMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHKKSFCVAAVIEINQVLDGCLGRDLFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKCEWLVGYGPGNFATLWAVHCLDDISPMRFPRVTLWAKQESNEIGAGSLSLASATGSSDRLPLKKVSVLRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSSLLKCIDGKVLYLDGHGGKILQVASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWKPCGRLQNQEFRLKYTSLCWAPSSLKDERFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICTIPFTVNSPLQSGPTSIFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFDALSWSVTLHHFDTAGSTCDCHFHDFDSIGLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPSGRDLENGVNSESQAYTIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQNPVSAISLTDSGHKIAALCTESHSKAARAVSIWEIVHLIDSGVFILEDKVHVDAEVVAVRWSTTGNDQLLLGVCTQIEMRVYGIARQPCKSTSFAAYDYSSEAQIWQCFAVTRTFSAIHDLWWGPKAMTCLVHNDYISLHGQWLAVVDKKQKIDNYPEIFASNLPNLVNATEEGRDSEFLSDSGTNDINEADTTSTSRGCIPLPSTSNAIDDGQVNSMSLIGTAYGSNTIDDIMSMGHMVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAEYITSSDTSEKGYAVKSVLCPDILLSKYYEGSLSNGPNPKDFQWGGTSGSMLQYSQFQSGLQSKFNMESYSPNSPATDLEFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDEPGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNESSWQQMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNLQDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMAGCLENPATESSTVSSNHVSFVDPSIGLYCLMLATKNSVKNALGERTASTLSRWASLMAATAFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHTTQGVFDHSVPHSSNWVSSGVSSTVDTHFRLGLAVQFLSMILREATAPLMNSEVVSCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHTDEDLLQYSALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGPDPKWSNALRFYFQGILESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFRMVQPLVISYFNGHMPYEVDLESVKRVYHQEASVSVPDASDVGVNSKFSSVVENHGVGYPVYSIPEDERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDIVCVTEKIMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLECQGSQANFLNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDWSDMYREVIRKNELYVPCNQDGRSSNEVASLANHASNSSPKAAVTANENSAFQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSDADWPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGKADRVPGYSGLGAIADPGSFFTQIRRWLGVSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPTMPLFLVGSSNTHIYLWEFGNERATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAALDGTVCTWQSEVGGRSNIHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWDTLAPPSTSQASINCHEGGARSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKMKKQRNPDGGSSTDGDQNKNGMLWYIPKAHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPNSRGYGGIIRAGVTDIQVCPNGFITCGGDGTVKFVSLVDSSYGDAK", "length": 2513, "header": "tr|F4IJ68-1|F4IJ68_ARATH Isoform 1 of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IJ68-1" }, "locus": { "chromosome": "2", "start_pos": 19115366, "end_pos": 19125856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G46560.1", "url": "https://www.ensemblgenomes.org/id/AT2G46560.1" }, { "database": "Ensembl Peptide", "id": "AT2G46560.1", "url": "https://www.ensemblgenomes.org/id/AT2G46560.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 108, "start_aa": "Thr", "end_pos": 108, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr108", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2193, "start_aa": "Thr", "end_pos": 2193, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2193", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 1780, "end_pos": 1780, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8AY83", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8AY83" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1780" }, { "start_pos": 631, "end_pos": 631, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8AY83", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8AY83" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser631" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AY28", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY28" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8AY83", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8AY83" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AY28", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY28" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G46560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G46560", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "RAVE complex", "id": "GO:0043291", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043291", "evidence": [ { "database": "UniProtKB", "id": "F4IJ68", "url": "https://www.uniprot.org/uniprotkb/F4IJ68" } ], "pmid": "" }, { "name": "Cul4-RING E3 ubiquitin ligase complex", "id": "GO:0080008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080008", "evidence": [ { "database": "UniProtKB", "id": "F4IJ68", "url": "https://www.uniprot.org/uniprotkb/F4IJ68" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "vacuolar acidification", "id": "GO:0007035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007035", "evidence": [ { "database": "UniProtKB", "id": "F4IJ68", "url": "https://www.uniprot.org/uniprotkb/F4IJ68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1137, "end_pos": 1139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1217, "end_pos": 1219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1225, "end_pos": 1227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1616, "end_pos": 1618, "annotation": "n_glycosylation_sequon" }, { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2021, "end_pos": 2023, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2085, "end_pos": 2087, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2241, "end_pos": 2243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" }, { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" }, { "start_pos": 935, "end_pos": 937, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IJ68-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 2513, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IJ68-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IJ68" } ], "lectin_list": [], "domain_list": 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"id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G17060", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G17060", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QGMQEME", "url": "https://omabrowser.org/oma/group/QGMQEME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017:SF372", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017:SF372", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20160", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20160", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_179298", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179298", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT2G17060", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G17060", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AY38", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AY38-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMF2", "url": "https://www.uniprot.org/uniprotkb/F4IMF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMF2-1", "url": "https://www.uniprot.org/uniprotkb/F4IMF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKESPTLRRYSMEASRQPQVFINFRGSELRYTFVYYLRTALVKNGINVFTDNMEPKGRNQKILFKRIEESKIALAIFSSRYTESSWCLEELVKMKECMDAEKLVIIPIFYIVTPYTIKKQMGDFGDKFRVLVDYVDDVTEKKWTDALKSVPLILGITYDGQSEEQLLINQIVGEVQRVIKIISQGEGDEKNKMVCTNTSTGSSFIPQNRNMVDPENQIELVGLSQRLKELKEKLDLSRKETRIVGVLGMPGIGKTTLVKRLYDEWKHNFQRHLHMVNIRQKSKEYGTHSLERMILKELLSDTYNDITEEMTYASVKDELLKKKVLLVLDDVSSKKQIQGLLGNLNWIRKGSRIVITTRDKISISQFEYTYVVPRLNITDGLKQFSFYAFEDHNCPYPGNLMDLSTKFVDYARGNPLALKILGRELLSIDKDQWPKRLDTLAQLPIPYIQDLLRASYDDLSNQQKEVFLVVAWFFGSGDEYYIRSLVDTEDPDSADDAASEVRDFAGNLLISISSGRLEMHDLMATFAKKLCSSLSNENNYGYQMIWNHESFNAAAKNKRMRYVNQPRKKVTESEMDNVMGILLDVSEMDNNMTLDSKFFSEMCNLRYLKVYNSQCSRDCDVGCKLTFPDGLKCSMENVRYLYWLQFPLKKLSKAFNPKNLIELNLPYSKITRLWKESKEISKLKWVDLSHSSELCDISGLIGAHNIRRLNLEGCIELKTLPQEMQEMESLIYLNLGGCTRLVSLPEFKLKSLKTLILSHCKNFEQFPVISECLEALYLQGTAIKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELILSGCSKLKFFPELKETMKSIKILLLDGTAIKQMPILLQCIQSQGHSVANKTLPNSLSDYYLPSSLLSLCLSGNDIESLHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKCLDAHGCDSLEEVGSPLAVLMVTGKIHCTYIFTNCNKLDQVAESNIISFTWRKSQMMSDALNRYNGGFVLESLVSTCFPGCEVPASFDHQAYGALLQTKLPRHWCDSRLTGIALCAVILFPDYQHQSNRFLVKCTCEFGTEDGPCISFSSIVGDINKRHVEKHGNGCIPSKASLRFQVTDGASEVGNCHVLKCGFTLVYTPNDSDDISPARVVDITTRDKEDGLENATSNKLSRNDYEFSHQSNCGVTSRRDECFLSEELP", "length": 1195, "header": "tr|F4IMF2-1|F4IMF2_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IMF2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AY38-1", "url": "https://www.uniprot.org/uniprotkb/F4IMF2/entry#A0A1P8AY38-1", "sequence": { "sequence": "MKESPTLRRYSMEASRQPQVFINFRGSELRYTFVYYLRTALVKNGINVFTDNMEPKGRNQKILFKRIEESKIALAIFSSRYTESSWCLEELVKMKECMDAEKLVIIPIFYIVTPYTIKKQMGDFGDKFRVLVDYVDDVTEKKWTDALKSVPLILGITYDGQSEEQLLINQIVGEVQRVIKIISQGEGDEKNKMVCTNTSTGSSFIPQNRNMVDPENQIELVGLSQRLKELKEKLDLSRKETRIVGVLGMPGIGKTTLVKRLYDEWKHNFQRHLHMVNIRQKSKEYGTHSLERMILKELLSDTYNDITEEMTYASVKDELLKKKVLLVLDDVSSKKQIQGLLGNLNWIRKGSRIVITTRDKISISQFEYTYVVPRLNITDGLKQFSFYAFEDHNCPYPGNLMDLSTKFVDYARGNPLALKILGRELLSIDKDQWPKRLDTLAQLPIPYIQDLLRASYDDLSNQQKEVFLVVAWFFGSGDEYYIRSLVDTEDPDSADDAASEVRDFAGNLLISISSGRLEMHDLMATFAKKLCSSLSNENNYGYQMIWNHESFNAAAKNKRMRYVNQPRKKVTESEMDNVMGILLDVSEMDNNMTLDSKFFSEMCNLRYLKVYNSQCSRDCDVGCKLTFPDGLKCSMENVRYLYWLQFPLKKLSKAFNPKNLIELNLPYSKITRLWKESKEISKLKWVDLSHSSELCDISGLIGAHNIRRLNLEGCIELKTLPQEMQEMESLIYLNLGGCTRLVSLPEFKLKSLKTLILSHCKNFEQFPVISECLEALYLQGTAIKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELILSGCSKLKFFPELKETMKSIKILLLDGTAIKQMPILLQCIQSQGHSVANKTLPNSLSDYYLPSSLLSLCLSGNDIESLHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKCLDAHGCDSLEEVGSPLAVLMVTGKIHCTYIFTNCNKLDQVAESNIISFTWRKSQMMSDALNRYNGGFVLESLVSTCFPGCEVPASFDHQAYGALLQTKLPRHWCDSRLTGIALCAVILFPDYQHQSNRFLVKCTCEFGTEDGPCISFSSIVGGWSEPGYEPRLLSLIMFLLAIQVG", "length": 1111, "header": "tr|A0A1P8AY38-1|F4IMF2_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IMF2-1" }, "locus": { "chromosome": "2", "start_pos": 7422336, "end_pos": 7427119, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G17060.2", "url": "https://www.ensemblgenomes.org/id/AT2G17060.2" }, { "database": "Ensembl Peptide", "id": "AT2G17060.2", "url": "https://www.ensemblgenomes.org/id/AT2G17060.2" } ] } }, { "isoform_ac": "F4IMF2-1", "url": "https://www.uniprot.org/uniprotkb/F4IMF2/entry#F4IMF2-1", "sequence": { "sequence": "MKESPTLRRYSMEASRQPQVFINFRGSELRYTFVYYLRTALVKNGINVFTDNMEPKGRNQKILFKRIEESKIALAIFSSRYTESSWCLEELVKMKECMDAEKLVIIPIFYIVTPYTIKKQMGDFGDKFRVLVDYVDDVTEKKWTDALKSVPLILGITYDGQSEEQLLINQIVGEVQRVIKIISQGEGDEKNKMVCTNTSTGSSFIPQNRNMVDPENQIELVGLSQRLKELKEKLDLSRKETRIVGVLGMPGIGKTTLVKRLYDEWKHNFQRHLHMVNIRQKSKEYGTHSLERMILKELLSDTYNDITEEMTYASVKDELLKKKVLLVLDDVSSKKQIQGLLGNLNWIRKGSRIVITTRDKISISQFEYTYVVPRLNITDGLKQFSFYAFEDHNCPYPGNLMDLSTKFVDYARGNPLALKILGRELLSIDKDQWPKRLDTLAQLPIPYIQDLLRASYDDLSNQQKEVFLVVAWFFGSGDEYYIRSLVDTEDPDSADDAASEVRDFAGNLLISISSGRLEMHDLMATFAKKLCSSLSNENNYGYQMIWNHESFNAAAKNKRMRYVNQPRKKVTESEMDNVMGILLDVSEMDNNMTLDSKFFSEMCNLRYLKVYNSQCSRDCDVGCKLTFPDGLKCSMENVRYLYWLQFPLKKLSKAFNPKNLIELNLPYSKITRLWKESKEISKLKWVDLSHSSELCDISGLIGAHNIRRLNLEGCIELKTLPQEMQEMESLIYLNLGGCTRLVSLPEFKLKSLKTLILSHCKNFEQFPVISECLEALYLQGTAIKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELILSGCSKLKFFPELKETMKSIKILLLDGTAIKQMPILLQCIQSQGHSVANKTLPNSLSDYYLPSSLLSLCLSGNDIESLHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKCLDAHGCDSLEEVGSPLAVLMVTGKIHCTYIFTNCNKLDQVAESNIISFTWRKSQMMSDALNRYNGGFVLESLVSTCFPGCEVPASFDHQAYGALLQTKLPRHWCDSRLTGIALCAVILFPDYQHQSNRFLVKCTCEFGTEDGPCISFSSIVGDINKRHVEKHGNGCIPSKASLRFQVTDGASEVGNCHVLKCGFTLVYTPNDSDDISPARVVDITTRDKEDGLENATSNKLSRNDYEFSHQSNCGVTSRRDECFLSEELP", "length": 1195, "header": "tr|F4IMF2-1|F4IMF2_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IMF2-1" }, "locus": { "chromosome": "2", "start_pos": 7422411, "end_pos": 7426890, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G17060.1", "url": "https://www.ensemblgenomes.org/id/AT2G17060.1" }, { "database": "Ensembl Peptide", "id": "AT2G17060.1", "url": "https://www.ensemblgenomes.org/id/AT2G17060.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 6, "end_pos": 6, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IMF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMF2" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Thr6" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AY38", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY38" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AY38", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AY38" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "F4IMF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMF2" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "pathway": [ { "id": "ath:AT2G17060", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G17060", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F4IMF2", "url": "https://www.uniprot.org/uniprotkb/F4IMF2" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F4IMF2", "url": "https://www.uniprot.org/uniprotkb/F4IMF2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "F4IMF2", "url": "https://www.uniprot.org/uniprotkb/F4IMF2" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "F4IMF2", "url": "https://www.uniprot.org/uniprotkb/F4IMF2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IMF2", "url": "https://www.uniprot.org/uniprotkb/F4IMF2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1136, "end_pos": 1138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1160, "end_pos": 1162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 591, "end_pos": 593, "annotation": "n_glycosylation_sequon" }, { "start_pos": 873, "end_pos": 875, "annotation": "n_glycosylation_sequon" }, { "start_pos": 905, "end_pos": 907, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16301", "name": "", "equation": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23530-2", "O48573-1", "F4HT77-1", "F4I902-1", "F4J339-1", "F4JNA9-1", "F4KHI3-1", "Q0WSX8-1", "Q9XGM3-1", "Q9C5Q9-1", "Q9C7X0-1", "Q9FT77-1", "F4I594-1", "F4JNB7-1", "F4JT80-1", "F4JWM0-1", "F4KHH8-1", "F4KIF3-1", "Q9CAK1-1", "Q9FHF0-1", "Q9SZ66-1", "F4JT78-1", "F4JT82-1", "O49471-1", "O82500-1", "Q9FI14-1", "Q9SCZ2-1", "Q9LUJ8-1", "Q9SYC9-1", "A0A1P8AT27-1", "A0A1P8B6A5-1", "A0A1P8B6H3-1", "Q9SW60-1", "A0A1P8B9V7-1", "Q9FKM9-1", "A0A1P8BDK2-1", "F4KFY1-1", "Q9LFN1-1", "F4I270-1", "F4J359-1", "F4J361-1", "Q9FHE8-1", "Q9FHE9-1", "Q9FKB9-1", "Q9M0Q5-1", "F4IBL4-1", "Q9FH20-1", "Q9FF28-1", "Q9FKE2-1", "Q9FN83-1", "Q9M285-1", "F4IMF2-1", "F4KD45-1", "F4J910-1", "O65507-1", "Q9FHF6-1", "Q8LFT2-1", "Q9M8X8-1", "Q9CAK0-1", "Q9FKR7-1", "F4I901-1", "F4JNB2-1", "A0A1P8B8A2-1", "Q9FHF4-1", "Q9FHG0-1", "Q9CAD9-1", "F4JNB9-1", "F4JWL7-1", "F4JWL8-1", "F4JYI4-1", "F4KFY5-1", "F4I9F1-1", "Q9CAE0-1", "Q9CAD8-1", "Q9FFS5-1", "Q9FGT2-1", "Q9FJG4-1", "Q9FL35-1", "Q9FXA6-1", "Q9LSX5-1", "Q9ZVX6-1" ], "evidence": [ { "id": "16301", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16301" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A1P8AT27", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "A0A1P8AT27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AT27" } ] } ] }, { "uniprot_ac": "A0A1P8B6A5", "gene_name": "SIKIC1", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = 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"categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G37290", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G37290", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MELYGHA", "url": "https://omabrowser.org/oma/group/MELYGHA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AYZ1", "url": "https://www.orthodb.org/?gene=A0A1P8AYZ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IQ28", "url": "https://www.orthodb.org/?gene=F4IQ28", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IQ29", "url": "https://www.orthodb.org/?gene=F4IQ29", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G37290", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G37290", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AYZ1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AYZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AYZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AYZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ28", "url": "https://www.uniprot.org/uniprotkb/F4IQ28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ28-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ29", "url": "https://www.uniprot.org/uniprotkb/F4IQ29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ29-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ29-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLSLVSKRSLEVDSRDAYGFALRPQHVQRYQEYLSIYTEEETERAEKWKNFLDRQEDRTAEPCSSDEEFQDTFQADGLESGEDSDSESEEGSRNGKHEDCELSGTSEQQLEQDRTETVGDVSKETEPAEEALVLDKSLRSDTESVKDEEEEKFESDKDKESSVGSESESDEEQQSQAVKEPVDHVHIQQEEKLVAEEDKCESGHEEKAQKETKAPRSVIEWAHIRPCLASIEDMMCSRVKNVKSTKNGQKNIVDDHASSIKESLSSIEESGENDRDSETSTSRSHSIKEENEAQGSVSPEPFFPWYEELEVLVRLGVPKDLRGEVWQAFVGVKARRVERYYQDLLAQITNSDENSSDVQRKWKKQIEKDIPRTFPGHPALNENGRDSLRRILLAYACHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLGSLFSSDIQVSLHIFLPYTEQCDRFFYSNNPPDAVNHLDYLGVQVAWISGPWFLSIFVNIIPWECVLRMWDVLLFEGNRVVLFRTAFAIMELYGPAIVATKDAGDAITSLQSLASSTFDSSQLVLTACMGYISTNEARLEELRKIHRPAVLEIVEERIQKGRVWKDKKGLASKLYSFKHEGSILDHEQKSTQRNDGENQDDDDESCSPFLNLDGANVDSEVDSLPDLQEQVVWMKVELCRLLEEKRSAVMRAEELEIALMEMVKEDNRLELSARIEQLERDVRELKQVLSDKKEQETAMLQVLMKVEQDQKLTEDARINAEQDAAAQRYAVHVLQEKNEKLVTQLAQMEKKLVTAETTLEATLQYESGQNKALSSSPRFTRTTTESPKKKTGFLSFGLGWRDRNKAKQTEESNVDNTSNAASEAKSPSKESVNLSKENKSEDLLDPETRR", "length": 916, "header": "tr|F4IQ29-1|F4IQ29_ARATH Isoform 1 of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IQ29-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AYZ1-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ29/entry#A0A1P8AYZ1-1", "sequence": { "sequence": "MTEQHLFVVHNYLRDRDAYGFALRPQHVQRYQEYLSIYTEEETERAEKWKNFLDRQEDRTAEPCSSDEEFQDTFQADGLESGEDSDSESEEGSRNGKHEDCELSGTSEQQLEQDRTETVGDVSKETEPAEEALVLDKSLRSDTESVKDEEEEKFESDKDKESSVGSESESDEEQQSQAVKEPVDHVHIQQEEKLVAEEDKCESGHEEKAQKETKAPRSVIEWAHIRPCLASIEDMMCSRVKNVKSTKNGQKNIVDDHASSIKESLSSIEESGENDRDSETSTSRSHSIKEENEAQGSVSPEPFFPWYEELEVLVRLGVPKDLRGEVWQAFVGVKARRVERYYQDLLAQITNSDENSSDVQRKWKKQIEKDIPRTFPGHPALNENGRDSLRRILLAYACHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVNHLDYLGVQVAWISGPWFLSIFVNIIPWECVLRMWDVLLFEGNRVVLFRTAFAIMELYGPAIVATKDAGDAITSLQSLASSTFDSSQLVLTACMGYISTNEARLEELRKIHRPAVLEIVEERIQKGRVWKDKKGLASKLYSFKHEGSILDHEQKSTQRNDGENQDDDDESCSPFLNLDGANVDSEVDSLPDLQEQVVWMKVELCRLLEEKRSAVMRAEELEIALMEMVKEDNRLELSARIEQLERDVRELKQVLSDKKEQETAMLQVLMKVEQDQKLTEDARINAEQDAAAQRYAVHVLQEKNEKLVTQLAQMEKKLVTAETTLEATLQYESGQNKALSSSPRFTRTTTESPKKKTGFLSFGLGWRDRNKAKQTEESNVDNTSNAASEAKSPSKESVNLSKENKSEDLLDPETRR", "length": 882, "header": "tr|A0A1P8AYZ1-1|F4IQ29_ARATH Computationally mapped isoform of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IQ29-1" }, "locus": { "chromosome": "2", "start_pos": 15656695, "end_pos": 15661735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G37290.3", "url": "https://www.ensemblgenomes.org/id/AT2G37290.3" }, { "database": "Ensembl Peptide", "id": "AT2G37290.3", "url": "https://www.ensemblgenomes.org/id/AT2G37290.3" } ] } }, { "isoform_ac": "F4IQ28-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ29/entry#F4IQ28-1", "sequence": { "sequence": "MLLSLVSKRSLEVDSRDAYGFALRPQHVQRYQEYLSIYTEEETERAEKWKNFLDRQEDRTAEPCSSDEEFQDTFQADGLESGEDSDSESEEGSRNGKHEDCELSGTSEQQLEQDRTETVGDVSKETEPAEEALVLDKSLRSDTESVKDEEEEKFESDKDKESSVGSESESDEEQQSQAVKEPVDHVHIQQEEKLVAEEDKCESGHEEKAQKETKAPRSVIEWAHIRPCLASIEDMMCSRVKNVKSTKNGQKNIVDDHASSIKESLSSIEESGENDRDSETSTSRSHSIKEENEAQGSVSPEPFFPWYEELEVLVRLGVPKDLRGEVWQAFVGVKARRVERYYQDLLAQITNSDENSSDVQRKWKKQIEKDIPRTFPGHPALNENGRDSLRRILLAYACHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVNHLDYLGVQVAWISGPWFLSIFVNIIPWECVLRMWDVLLFEGNRVVLFRTAFAIMELYGPAIVATKDAGDAITSLQSLASSTFDSSQLVLTACMGYISTNEARLEELRKIHRPAVLEIVEERIQKGRVWKDKKGLASKLYSFKHEGSILDHEQKSTQRNDGENQDDDDESCSPFLNLDGANVDSEVDSLPDLQEQVVWMKVELCRLLEEKRSAVMRAEELEIALMEMVKEDNRLELSARIEQLERDVRELKQVLSDKKEQETAMLQVLMKVEQDQKLTEDARINAEQDAAAQRYAVHVLQEKNEKLVTQLAQMEKKLVTAETTLEATLQYESGQNKALSSSPRFTRTTTESPKKKTGFLSFGLGWRDRNKAKQTEESNVDNTSNAASEAKSPSKESVNLSKENKSEDLLDPETRR", "length": 882, "header": "tr|F4IQ28-1|F4IQ28_ARATH Computationally mapped isoform of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IQ29-1" }, "locus": { "chromosome": "2", "start_pos": 15656427, "end_pos": 15661582, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G37290.1", "url": "https://www.ensemblgenomes.org/id/AT2G37290.1" }, { "database": "Ensembl Peptide", "id": "AT2G37290.1", "url": "https://www.ensemblgenomes.org/id/AT2G37290.1" } ] } }, { "isoform_ac": "F4IQ29-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ29/entry#F4IQ29-1", "sequence": { "sequence": "MLLSLVSKRSLEVDSRDAYGFALRPQHVQRYQEYLSIYTEEETERAEKWKNFLDRQEDRTAEPCSSDEEFQDTFQADGLESGEDSDSESEEGSRNGKHEDCELSGTSEQQLEQDRTETVGDVSKETEPAEEALVLDKSLRSDTESVKDEEEEKFESDKDKESSVGSESESDEEQQSQAVKEPVDHVHIQQEEKLVAEEDKCESGHEEKAQKETKAPRSVIEWAHIRPCLASIEDMMCSRVKNVKSTKNGQKNIVDDHASSIKESLSSIEESGENDRDSETSTSRSHSIKEENEAQGSVSPEPFFPWYEELEVLVRLGVPKDLRGEVWQAFVGVKARRVERYYQDLLAQITNSDENSSDVQRKWKKQIEKDIPRTFPGHPALNENGRDSLRRILLAYACHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLGSLFSSDIQVSLHIFLPYTEQCDRFFYSNNPPDAVNHLDYLGVQVAWISGPWFLSIFVNIIPWECVLRMWDVLLFEGNRVVLFRTAFAIMELYGPAIVATKDAGDAITSLQSLASSTFDSSQLVLTACMGYISTNEARLEELRKIHRPAVLEIVEERIQKGRVWKDKKGLASKLYSFKHEGSILDHEQKSTQRNDGENQDDDDESCSPFLNLDGANVDSEVDSLPDLQEQVVWMKVELCRLLEEKRSAVMRAEELEIALMEMVKEDNRLELSARIEQLERDVRELKQVLSDKKEQETAMLQVLMKVEQDQKLTEDARINAEQDAAAQRYAVHVLQEKNEKLVTQLAQMEKKLVTAETTLEATLQYESGQNKALSSSPRFTRTTTESPKKKTGFLSFGLGWRDRNKAKQTEESNVDNTSNAASEAKSPSKESVNLSKENKSEDLLDPETRR", "length": 916, "header": "tr|F4IQ29-1|F4IQ29_ARATH Isoform 1 of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IQ29-1" }, "locus": { "chromosome": "2", "start_pos": 15656714, "end_pos": 15661685, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G37290.2", "url": "https://www.ensemblgenomes.org/id/AT2G37290.2" }, { "database": "Ensembl Peptide", "id": "AT2G37290.2", "url": "https://www.ensemblgenomes.org/id/AT2G37290.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AYZ1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AYZ1" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AYZ1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AYZ1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G37290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G37290", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IQ29", "url": "https://www.uniprot.org/uniprotkb/F4IQ29" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F4IQ29", "url": "https://www.uniprot.org/uniprotkb/F4IQ29" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 355, "end_pos": 357, "annotation": "n_glycosylation_sequon" }, { "start_pos": 882, "end_pos": 884, "annotation": "n_glycosylation_sequon" }, { "start_pos": 899, "end_pos": 901, "annotation": "n_glycosylation_sequon" }, { "start_pos": 904, "end_pos": 906, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IQ29-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 916, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IQ29-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IQ29" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IQ29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IQ29" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 317, "end_pos": 543, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 355, "end_pos": 357 }, { "start_pos": 882, "end_pos": 884 }, { "start_pos": 899, "end_pos": 901 }, { "start_pos": 904, "end_pos": 906 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"IPR055296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G41830", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G41830", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NEIENMG", "url": "https://omabrowser.org/oma/group/NEIENMG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46087", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46087", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46087:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46087:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21052", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21052", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_181714", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_181714", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G41830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G41830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AYZ7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AYZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AYZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AYZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ILW4", "url": "https://www.uniprot.org/uniprotkb/F4ILW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ILW4-1", "url": "https://www.uniprot.org/uniprotkb/F4ILW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAVSGVISRQVLPVCGSLCILCPALRARSRQPVKRYKKLIAEIFPRNQEEGINDRKIGKLCEYAAKNAVRMPKISDSLEHRCYKELRNENFHSAKIAMCIYRRLLVTCKEQIPLFSSGFLRTVQALLDQTRQDEMQIVGCQSLFEFVINQKDGSSLFNLEGFLPKLCQLGLEGGDDDRSRSLRAAGLQALSAMIWLMGEYSHIPSEFDNVVSAVLENYGHPKILTNANDSGRKWVDEVLKNEGHVAYEDSLINVPSWRTVVNDKGELNVKMEDSLDPSFWSKVCLHNMAKLGEEATTMRRILESLFRNFDEGCLWSTENSIAFPVLRDLQFLMEISGQRTHFLLSMLIKHLDHKSVLKHPSMQLNILEVTSSLSETAKVEHSATIVSAISDIMRHLRKCMHSSLDEANLGTDAANCIRMVSVAVDKCLVQLTKKVGDAGPILDAMALMLENISAVTDVARTTIAAVFRTAQIIASIPNLQYQNKAFPEALFHQLLQAMVHPDHKTRIGAHRIFSVVLVPTSVCPRPSSTTTDLKKGMGLPRSLSRTASVFSSSAALFEKLKKDKFSSMLTSDHSQNGMPEEERGSSTGEILDRLKSSYRQAYSTWNQPLTSVVDNSVDLLNSELDVVHIRLSSHQIGLLLSSIWAQSISPANTPDNYEAIANTYSLVLLFSRVKNSSHDALIRSFQMALSLRDISLMEGGPLPPSRRRSLFTLAASMVLFSSKAFNLFSLADFTKVTLQGPRLDPFLNLVDDHKLKAVNSDQLKVAYGCEKDDASALDTLSNIALSTEHSRGTLVYEIVKSLEDMCNSEMDKMREQLLTEFMPDDACPLGTRFLEDTHKTYQIDSGDVKPRKEDAEDQEFGDGTETVTKNNHVTFSEIPDLLTVNQILESVVETTRQVGRISFHTAADASYKEMTLHCENLLMGKQQKISSLLNSQLRHESSVNCSPRQHDEEIKIASFHPMINSAFHTGVEVPLLSKEFDMKSPRTPVGTIQSPCYAELQNNPQAFRLPASSPYDNFLKAAGC", 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superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ILW4-1" }, "locus": { "chromosome": "2", "start_pos": 17450109, "end_pos": 17455372, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G41830.2", "url": "https://www.ensemblgenomes.org/id/AT2G41830.2" }, { "database": "Ensembl Peptide", "id": "AT2G41830.2", "url": "https://www.ensemblgenomes.org/id/AT2G41830.2" } ] } }, { "isoform_ac": "F4ILW4-1", "url": "https://www.uniprot.org/uniprotkb/F4ILW4/entry#F4ILW4-1", "sequence": { "sequence": "MSAVSGVISRQVLPVCGSLCILCPALRARSRQPVKRYKKLIAEIFPRNQEEGINDRKIGKLCEYAAKNAVRMPKISDSLEHRCYKELRNENFHSAKIAMCIYRRLLVTCKEQIPLFSSGFLRTVQALLDQTRQDEMQIVGCQSLFEFVINQKDGSSLFNLEGFLPKLCQLGLEGGDDDRSRSLRAAGLQALSAMIWLMGEYSHIPSEFDNVVSAVLENYGHPKILTNANDSGRKWVDEVLKNEGHVAYEDSLINVPSWRTVVNDKGELNVKMEDSLDPSFWSKVCLHNMAKLGEEATTMRRILESLFRNFDEGCLWSTENSIAFPVLRDLQFLMEISGQRTHFLLSMLIKHLDHKSVLKHPSMQLNILEVTSSLSETAKVEHSATIVSAISDIMRHLRKCMHSSLDEANLGTDAANCIRMVSVAVDKCLVQLTKKVGDAGPILDAMALMLENISAVTDVARTTIAAVFRTAQIIASIPNLQYQNKAFPEALFHQLLQAMVHPDHKTRIGAHRIFSVVLVPTSVCPRPSSTTTDLKKGMGLPRSLSRTASVFSSSAALFEKLKKDKFSSMLTSDHSQNGMPEEERGSSTGEILDRLKSSYRQAYSTWNQPLTSVVDNSVDLLNSELDVVHIRLSSHQIGLLLSSIWAQSISPANTPDNYEAIANTYSLVLLFSRVKNSSHDALIRSFQMALSLRDISLMEGGPLPPSRRRSLFTLAASMVLFSSKAFNLFSLADFTKVTLQGPRLDPFLNLVDDHKLKAVNSDQLKVAYGCEKDDASALDTLSNIALSTEHSRGTLVYEIVKSLEDMCNSEMDKMREQLLTEFMPDDACPLGTRFLEDTHKTYQIDSGDVKPRKEDAEDQEFGDGTETVTKNNHVTFSEIPDLLTVNQILESVVETTRQVGRISFHTAADASYKEMTLHCENLLMGKQQKISSLLNSQLRHESSVNCSPRQHDEEIKIASFHPMINSAFHTGVEVPLLSKEFDMKSPRTPVGTIQSPCYAELQNNPQAFRLPASSPYDNFLKAAGC", "length": 1025, "header": "tr|F4ILW4-1|F4ILW4_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ILW4-1" }, "locus": { "chromosome": "2", "start_pos": 17450109, "end_pos": 17457130, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G41830.1", "url": "https://www.ensemblgenomes.org/id/AT2G41830.1" }, { "database": "Ensembl Peptide", "id": "AT2G41830.1", "url": "https://www.ensemblgenomes.org/id/AT2G41830.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 231, "end_pos": 231, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ILW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ILW4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser231" }, { "start_pos": 543, "end_pos": 543, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ILW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ILW4" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser543" }, { "start_pos": 545, "end_pos": 545, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ILW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ILW4" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser545" }, { "start_pos": 549, "end_pos": 549, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ILW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ILW4" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser549" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AYZ7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AYZ7" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4ILW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ILW4" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4ILW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ILW4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "F4ILW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ILW4" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AYZ7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AYZ7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4ILW4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ILW4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT2G41830", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G41830", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4ILW4", "url": "https://www.uniprot.org/uniprotkb/F4ILW4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F4ILW4", "url": "https://www.uniprot.org/uniprotkb/F4ILW4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "pollen development", "id": "GO:0009555", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009555", "evidence": [ { "database": "UniProtKB", "id": "F4ILW4", "url": "https://www.uniprot.org/uniprotkb/F4ILW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" }, { "start_pos": 945, "end_pos": 947, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4ILW4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1025, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4ILW4-F1.pdb", "url_external": 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G25640", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G25640", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AZ23", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZ23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AZ23-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZ23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ISL5", "url": "https://www.uniprot.org/uniprotkb/F4ISL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ISL5-1", "url": "https://www.uniprot.org/uniprotkb/F4ISL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNNLLPQPCMQMGQFINVPTPTPELISNPEMRLSQPICSHISGGRQDFHVMLPSVVGLGSVNMDKTLLPGKRKSPLHPSVQNKRMALPMEGRPWASAPMPVQLSSVSPRTQYLPASFVSKNSFVSFSKPGKQAAARKPTLQKPMLLKPQSESSGSVRSKMRESLAGALAMVQCQMDVPNESKMLDSETVANPLEGHVSGPVSAASGVDVMVSNGSTEMLTLSDPSPVAGISVQTVLPEILSIAKTSDAQVPEAVKPFVQDNVSYSDNVFSKDDLLQGNDLSWALESDIEFTVNCQNEMIGAMANDGSLEKLLLDPQVLAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSMSAEELASKELAEWRQAKAEEMAQMVVLQDTEVDIRSLVRKTHKGEFQVEVEPMDSGSVEVSVGMSSINWSRTKNFKKKTPSITKTLGVKNELNSSNESTGPINGVTIDDEMQAATGSLPPIVSLDEFMSSIDSESPSGFLSSDTEKKPSVSDNNDVEEVLVSSPKESANIDLCTSPVKAEALSPLTAKASSPVNAEDADIVSSKPSSDLKSKTTSVFIPDGERLWEGVLQLSPSTVSSVIGILRSGEKTTTKEWPILLEIKGRVRLDAFEKFVRELPNSRSRAVMVMCFVCKEECSKTEQENISEVVDSYAKDGRVGYAEPASGVELYLCPTRGRTVEILNKIVPRNQLDFLKSINDDGLIGVVVWRRHTI", "length": 745, "header": "tr|F4ISL5-1|F4ISL5_ARATH Isoform 1 of SPOC domain / Transcription elongation factor S-II protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ISL5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AZ23-1", "url": 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}, "locus": { "chromosome": "2", "start_pos": 10910481, "end_pos": 10914528, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G25640.2", "url": "https://www.ensemblgenomes.org/id/AT2G25640.2" }, { "database": "Ensembl Peptide", "id": "AT2G25640.2", "url": "https://www.ensemblgenomes.org/id/AT2G25640.2" } ] } }, { "isoform_ac": "F4ISL5-1", "url": "https://www.uniprot.org/uniprotkb/F4ISL5/entry#F4ISL5-1", "sequence": { "sequence": "MSNNLLPQPCMQMGQFINVPTPTPELISNPEMRLSQPICSHISGGRQDFHVMLPSVVGLGSVNMDKTLLPGKRKSPLHPSVQNKRMALPMEGRPWASAPMPVQLSSVSPRTQYLPASFVSKNSFVSFSKPGKQAAARKPTLQKPMLLKPQSESSGSVRSKMRESLAGALAMVQCQMDVPNESKMLDSETVANPLEGHVSGPVSAASGVDVMVSNGSTEMLTLSDPSPVAGISVQTVLPEILSIAKTSDAQVPEAVKPFVQDNVSYSDNVFSKDDLLQGNDLSWALESDIEFTVNCQNEMIGAMANDGSLEKLLLDPQVLAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSMSAEELASKELAEWRQAKAEEMAQMVVLQDTEVDIRSLVRKTHKGEFQVEVEPMDSGSVEVSVGMSSINWSRTKNFKKKTPSITKTLGVKNELNSSNESTGPINGVTIDDEMQAATGSLPPIVSLDEFMSSIDSESPSGFLSSDTEKKPSVSDNNDVEEVLVSSPKESANIDLCTSPVKAEALSPLTAKASSPVNAEDADIVSSKPSSDLKSKTTSVFIPDGERLWEGVLQLSPSTVSSVIGILRSGEKTTTKEWPILLEIKGRVRLDAFEKFVRELPNSRSRAVMVMCFVCKEECSKTEQENISEVVDSYAKDGRVGYAEPASGVELYLCPTRGRTVEILNKIVPRNQLDFLKSINDDGLIGVVVWRRHTI", "length": 745, "header": "tr|F4ISL5-1|F4ISL5_ARATH Isoform 1 of SPOC domain / Transcription elongation factor S-II protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ISL5-1" }, "locus": { "chromosome": "2", "start_pos": 10910461, "end_pos": 10914547, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G25640.1", "url": "https://www.ensemblgenomes.org/id/AT2G25640.1" }, { "database": "Ensembl Peptide", "id": "AT2G25640.1", "url": "https://www.ensemblgenomes.org/id/AT2G25640.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 23, "start_aa": "Thr", "end_pos": 23, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr23", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AZ23", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZ23" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AZ23", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZ23" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G25640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G25640", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F4ISL5", "url": "https://www.uniprot.org/uniprotkb/F4ISL5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "translation elongation factor activity", "id": "GO:0003746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003746", "evidence": [ { "database": "UniProtKB", "id": "F4ISL5", "url": "https://www.uniprot.org/uniprotkb/F4ISL5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4ISL5", "url": "https://www.uniprot.org/uniprotkb/F4ISL5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 470, "end_pos": 472, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": 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"isoforms": [ { "isoform_ac": "A0A1P8AZ49-1", "url": "https://www.uniprot.org/uniprotkb/F4IFA9/entry#A0A1P8AZ49-1", "sequence": { "sequence": "MELQVLVLRPIFFFFFFVFLTILQQSSSARVLTITKPDRHDYAASARWLVSQNSWGVLSTLSVDHKGAPFGNVVSFSDGLPEKGNGIPYFYLTTLDPTARNALKDQRASLAISESPLGTCTRDPMNPTCSKLTLTGKVKEFFLIDTTKKLTVKCFGLYLIIMFQLLILEGGSEEAEVAKKALFTKHPEMMDWPKDHDFRFFKLEIIDIFLINWYGGAKPITVDEYLHAKS", "length": 230, "header": "tr|A0A1P8AZ49-1|F4IFA9_ARATH Computationally mapped isoform of Pyridoxamine 5'-phosphate oxidase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFA9-1" }, "locus": { "chromosome": "2", "start_pos": 1644497, "end_pos": 1646355, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04690.5", "url": "https://www.ensemblgenomes.org/id/AT2G04690.5" }, { "database": "Ensembl Peptide", "id": "AT2G04690.5", "url": "https://www.ensemblgenomes.org/id/AT2G04690.5" } ] } }, { "isoform_ac": "A0A1P8AZ71-1", "url": 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"MELQVLVLRPIFFFFFFVFLTILQQSSSARVLTITKPDRHDYAASARWLVSQNSWGVLSTLSVDHKGAPFGNVVSFSDGLPEKGNGIPYFYLTTLDPTARNALKDQRASLAISESPLGTCTRDPMNPTCSKLTLTGKLLILEGGSEEAEVAKKALFTKHPEMMDWPKDHDFRFFKLEIIDIFLINWYGGAKPITVDEYLHAKS", "length": 203, "header": "tr|F4IFA9-1|F4IFA9_ARATH Isoform 1 of Pyridoxamine 5'-phosphate oxidase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFA9-1" }, "locus": { "chromosome": "2", "start_pos": 1644456, "end_pos": 1646443, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04690.3", "url": "https://www.ensemblgenomes.org/id/AT2G04690.3" }, { "database": "Ensembl Peptide", "id": "AT2G04690.3", "url": "https://www.ensemblgenomes.org/id/AT2G04690.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AZ49", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZ49" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AZ49", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZ49" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G04690", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G04690", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4IFA9", "url": "https://www.uniprot.org/uniprotkb/F4IFA9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IFA9", "url": "https://www.uniprot.org/uniprotkb/F4IFA9" } ], "pmid": "" }, { "name": "secretory vesicle", "id": "GO:0099503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099503", "evidence": [ { "database": "UniProtKB", "id": "F4IFA9", 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superfamily protein", "type": "synonym", "evidence": [ { "id": "F4IFF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IFF4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IFF4", "url": "https://www.uniprot.org/uniprotkb/F4IFF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IFF4", "locus": {} } ], "crossref": [ { "id": "F4IFF4", "url": "https://alphafold.ebi.ac.uk/entry/F4IFF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G14060", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G14060", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "815891", 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"MSPSRDSLVDALKMKGGTGDHSYATNSHYQRSVFYEIQPLVIENVREMLLKNGFPGCIKVADLGCSTGQNTVLAMSAIAYTIMESYQQMSKNPPEIDCYLNDLPENDFNTTFKLFHSFQEKLKPEVKGKWFVSGVPGSFYSRLFPRKSLHFVHSAFSIHWLSRIPDGLESNTKSIHIKYPYPSNVYKSYLNQFKIDFSLFLKMRSEEVVHNGHMVLTFVGRKVSDTLSKDCFQVWSLLSDCLLDLASEGFVNDSMVKSFNMPFYNPNEEEVREFILKEGSFEITKIEKFDHVVPYKIDREEEDEEQSLQLEAGIKHASWARCITEPLLVAHFGDAIIEPVFNKYAHYMAKYLSVSNHRRNMTLVIVVSLTRK", "length": 372, "header": "tr|F4IFF4-1|F4IFF4_ARATH Isoform 1 of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IFF4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AZJ0-1", "url": "https://www.uniprot.org/uniprotkb/F4IFF4/entry#A0A1P8AZJ0-1", "sequence": { "sequence": "MSPSRDSLVDALKMKGGTGDHSYATNSHYQRSVFYEIQPLVIENVREMLLKNGFPGCIKVADLGCSTGQNTVLAMSAIAYTIMESYQQMSKNPPEIDCYLNDLPENDFNTTFKLFHSFQEKLKPEVKGKWFVSGVPGSFYSRLFPRKSLHFVHSAFSIHWLSRIPDGLESNTKSIHIKYPYPSNVYKSYLNQFKIDFSLFLKMRSEEVVHNGHMVLTFVGRKVSDTLSKDCFQVWSLLSDCLLDLASEVHTQ", "length": 252, "header": "tr|A0A1P8AZJ0-1|F4IFF4_ARATH Computationally mapped isoform of S-adenosyl-L-methionine-dependent methyltransferases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IFF4-1" }, "locus": { "chromosome": "2", "start_pos": 5914414, "end_pos": 5916436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G14060.2", "url": "https://www.ensemblgenomes.org/id/AT2G14060.2" }, { "database": "Ensembl Peptide", "id": "AT2G14060.2", "url": "https://www.ensemblgenomes.org/id/AT2G14060.2" } ] } }, { "isoform_ac": "F4IFF4-1", "url": "https://www.uniprot.org/uniprotkb/F4IFF4/entry#F4IFF4-1", "sequence": { "sequence": 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"F4IJL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IJL5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IJL5", "url": "https://www.uniprot.org/uniprotkb/F4IJL5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IJL5", "locus": {} } ], "crossref": [ { "id": "F4IJL5", "url": "https://alphafold.ebi.ac.uk/entry/F4IJL5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G28755", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G28755", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817425", "url": "https://www.ncbi.nlm.nih.gov/gene/817425", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G28755", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G28755", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NEFTMIE", "url": "https://omabrowser.org/oma/group/NEFTMIE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8AZW1", "url": "https://www.orthodb.org/?gene=A0A1P8AZW1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IJL5", "url": "https://www.orthodb.org/?gene=F4IJL5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43078", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43078", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43078:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43078:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT2G28755", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G28755", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8AZW1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8AZW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZW1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IJL5", "url": "https://www.uniprot.org/uniprotkb/F4IJL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IJL5-1", "url": "https://www.uniprot.org/uniprotkb/F4IJL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVNMMEGLKRLMAGDKSGPINIGNPGEFSIVELAETVKALIKPDVEIKIVENIPDDPRQS", "length": 61, "header": "tr|F4IJL5-1|F4IJL5_ARATH Isoform 1 of UDP-D-glucuronate carboxy-lyase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IJL5-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AZW1-1", "url": "https://www.uniprot.org/uniprotkb/F4IJL5/entry#A0A1P8AZW1-1", "sequence": { "sequence": "MRVNMMEGLKRLMAGDKSGPINIGNPAY", "length": 28, "header": "tr|A0A1P8AZW1-1|F4IJL5_ARATH Computationally mapped isoform of UDP-D-glucuronate carboxy-lyase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IJL5-1" }, "locus": { "chromosome": "2", "start_pos": 12334019, "end_pos": 12334788, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G28755.2", "url": "https://www.ensemblgenomes.org/id/AT2G28755.2" }, { "database": "Ensembl Peptide", "id": "AT2G28755.2", "url": "https://www.ensemblgenomes.org/id/AT2G28755.2" } ] } }, { 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Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AZW1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZW1" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8AZW1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8AZW1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G28755", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G28755", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "D-xylose metabolic process", "id": "GO:0042732", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042732", "evidence": [ { "database": "UniProtKB", "id": "F4IJL5", "url": "https://www.uniprot.org/uniprotkb/F4IJL5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F4IJL5", "url": "https://www.uniprot.org/uniprotkb/F4IJL5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "NAD+ binding", "id": "GO:0070403", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ39", "url": "https://www.uniprot.org/uniprotkb/F4IQ39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IQ39-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ39-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSWLRSAVNKAVEVGGKNNITRTVRNYADSVVLTAGNAVSEGAKLIQDRIGSRNVKSFSLAVKRLEEVSVSSRGSERVQLLRRWLVALREIERMSYSCFDNNNHKTDDHTQSEDSPKNFSTVYYVDPGLPGEPMTFRDVFLHSEALEGMVLSMILEAPNEEEVQLLLELFGLCLSGEKEVHEAVIQNVQDLATVFLKYKDEVLAKREELLQYVQGAIGGLKLSADIARIDIEAHTLMEKLDKTKVKVLEHASSEDASKTAASTEALREILEQVRTFSKLEALLLRKKSLHNGDTLQRHIEKVDKLKVLSESLLNSTSKAEKRIMDHRSQKEEALSYRVSKTTEVGQLEKDVAAELKKLEILKEDLEAELKRVNTSITSARARLRNAQEEREQFDNASNEILMHLKSKEEELTRSITSCRVEADVVNKWIKFLEDTWILQSKFSQQKDNQVSGEMERYSDHFIDLIVQLLSFYKEQLDPYIPKIRGVVASLEPSKGLEAEKIIDNKDTKPFESRKQLEKEYLDLEAKFVTTLSVVDAMKKPFYSQTEGISRKDDKRVKELFEVLDKTKQEFEAIERPLLDIESPSRTSSSSRSPSLKMTHETPLSDTVLKLSGGDDSPDSKKGSSGKEEDPAKKQLELELDVDGEEFLADEINDWEFDALDETLTSKTSS", "length": 669, "header": "tr|F4IQ39-1|F4IQ39_ARATH Isoform 1 of Centrosomal protein of 135 kDa-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IQ39-1" }, "isoforms": [ { "isoform_ac": "A0A1P8AZZ9-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ39/entry#A0A1P8AZZ9-1", "sequence": { "sequence": 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"AT2G37370.4", "url": "https://www.ensemblgenomes.org/id/AT2G37370.4" } ] } }, { "isoform_ac": "F4IQ39-1", "url": "https://www.uniprot.org/uniprotkb/F4IQ39/entry#F4IQ39-1", "sequence": { "sequence": "MSWLRSAVNKAVEVGGKNNITRTVRNYADSVVLTAGNAVSEGAKLIQDRIGSRNVKSFSLAVKRLEEVSVSSRGSERVQLLRRWLVALREIERMSYSCFDNNNHKTDDHTQSEDSPKNFSTVYYVDPGLPGEPMTFRDVFLHSEALEGMVLSMILEAPNEEEVQLLLELFGLCLSGEKEVHEAVIQNVQDLATVFLKYKDEVLAKREELLQYVQGAIGGLKLSADIARIDIEAHTLMEKLDKTKVKVLEHASSEDASKTAASTEALREILEQVRTFSKLEALLLRKKSLHNGDTLQRHIEKVDKLKVLSESLLNSTSKAEKRIMDHRSQKEEALSYRVSKTTEVGQLEKDVAAELKKLEILKEDLEAELKRVNTSITSARARLRNAQEEREQFDNASNEILMHLKSKEEELTRSITSCRVEADVVNKWIKFLEDTWILQSKFSQQKDNQVSGEMERYSDHFIDLIVQLLSFYKEQLDPYIPKIRGVVASLEPSKGLEAEKIIDNKDTKPFESRKQLEKEYLDLEAKFVTTLSVVDAMKKPFYSQTEGISRKDDKRVKELFEVLDKTKQEFEAIERPLLDIESPSRTSSSSRSPSLKMTHETPLSDTVLKLSGGDDSPDSKKGSSGKEEDPAKKQLELELDVDGEEFLADEINDWEFDALDETLTSKTSS", "length": 669, "header": "tr|F4IQ39-1|F4IQ39_ARATH Isoform 1 of Centrosomal protein of 135 kDa-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IQ39-1" }, "locus": { "chromosome": "2", "start_pos": 15679107, "end_pos": 15683296, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G37370.1", "url": "https://www.ensemblgenomes.org/id/AT2G37370.1" }, { "database": "Ensembl Peptide", "id": "AT2G37370.1", "url": "https://www.ensemblgenomes.org/id/AT2G37370.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 263, "end_pos": 263, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IQ39", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IQ39" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr263" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", 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"tr|A0A1P8B0E6-1|F4IFB5_ARATH Computationally mapped isoform of PTB domain engulfment adapter OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFB5-1" }, "locus": { "chromosome": "2", "start_pos": 1679443, "end_pos": 1680534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04790.12", "url": "https://www.ensemblgenomes.org/id/AT2G04790.12" }, { "database": "Ensembl Peptide", "id": "AT2G04790.12", "url": "https://www.ensemblgenomes.org/id/AT2G04790.12" } ] } }, { "isoform_ac": "A0A1P8B0E8-1", "url": "https://www.uniprot.org/uniprotkb/F4IFB5/entry#A0A1P8B0E8-1", "sequence": { "sequence": "MLMVKKEDNDSSHTKQKKTMASLFTPSPTTTSSSGDTIYVAAVPLKAAAGPPQLIMSMAYSLNISNLQHFMVLIKPSSPIRQEVLVFDFQPRNPESIEAAISLLSGNLIPGSDSQTSNVICDSDNFSLIFNEPF", "length": 134, "header": "tr|A0A1P8B0E8-1|F4IFB5_ARATH Computationally mapped isoform of PTB domain engulfment adapter OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFB5-1" }, "locus": { "chromosome": "2", "start_pos": 1679307, "end_pos": 1680543, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04790.6", "url": "https://www.ensemblgenomes.org/id/AT2G04790.6" }, { "database": "Ensembl Peptide", "id": "AT2G04790.6", "url": "https://www.ensemblgenomes.org/id/AT2G04790.6" } ] } }, { "isoform_ac": "A0A1P8B0F3-1", "url": "https://www.uniprot.org/uniprotkb/F4IFB5/entry#A0A1P8B0F3-1", "sequence": { "sequence": "MLMVKKEDNDSSHTKQKKTMASLFTPSPTTTSSSGDTIYVAAVPLKAAAGPPQLIMSMAYSLNISNLQHFMVLIKPSSPIRQEVLVFDFQPRNPESIEAAISLLSGNLIPGVVLQRRLKNVPRQRCWMVGPSKGNDAMEMAMEFNKSWETDLRVGFHDCRHYTNGLVLYKL", "length": 171, "header": "tr|A0A1P8B0F3-1|F4IFB5_ARATH Computationally mapped isoform of PTB domain engulfment adapter OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFB5-1" }, "locus": { "chromosome": "2", "start_pos": 1679443, "end_pos": 1680534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04790.13", "url": "https://www.ensemblgenomes.org/id/AT2G04790.13" }, { "database": "Ensembl Peptide", "id": "AT2G04790.13", "url": "https://www.ensemblgenomes.org/id/AT2G04790.13" } ] } }, { "isoform_ac": "F4IFB5-1", "url": "https://www.uniprot.org/uniprotkb/F4IFB5/entry#F4IFB5-1", "sequence": { "sequence": "MASLFTPSPTTTSSSGDTIYVAAVPLKAAAGPPQLIMSMAYSLNISNLQHFMVLIKPSSPIRQEVLVFDFQPRNPESIEAAISLLSGNLIPGVVLQRRLKNVPRQRCWMVGPSKGNDAMEMAMEFNKSWETDLRVGFHDCRHYTNELVQHLTGEMQIVERLPRS", "length": 164, "header": "tr|F4IFB5-1|F4IFB5_ARATH Isoform 1 of PTB domain engulfment adapter OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IFB5-1" }, "locus": { "chromosome": "2", "start_pos": 1679507, "end_pos": 1680537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04790.2", "url": "https://www.ensemblgenomes.org/id/AT2G04790.2" }, { "database": "Ensembl Peptide", "id": "AT2G04790.2", "url": "https://www.ensemblgenomes.org/id/AT2G04790.2" } ] } }, { "isoform_ac": "F4IFB6-1", "url": "https://www.uniprot.org/uniprotkb/F4IFB5/entry#F4IFB6-1", 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Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0D0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0D0" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0D0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0D0" } ], "reference": [ { "type": 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"monoisotopic_mass": 15019.0 }, "refseq": {}, "gene_names": [ { "name": "T19C21.6", "type": "synonym", "evidence": [ { "id": "F4ISY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ISY9" } ] }, { "name": "T19C21_6", "type": "synonym", "evidence": [ { "id": "F4ISY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ISY9" } ] } ], "protein_names": [ { "name": "Sel1 repeat protein", "type": "synonym", "evidence": [ { "id": "F4ISY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ISY9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4ISY9", "url": "https://www.uniprot.org/uniprotkb/F4ISY9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4ISY9", "locus": {} } ], "crossref": [ { "id": "F4ISY9", "url": "https://alphafold.ebi.ac.uk/entry/F4ISY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G38450", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G38450", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "818426", "url": "https://www.ncbi.nlm.nih.gov/gene/818426", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G38450", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G38450", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RLWITKA", "url": "https://omabrowser.org/oma/group/RLWITKA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR36792", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36792", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36792:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36792:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT2G38450", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G38450", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B0M8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0M8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B0M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0M8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ISY9", "url": "https://www.uniprot.org/uniprotkb/F4ISY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ISY9-1", "url": "https://www.uniprot.org/uniprotkb/F4ISY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKSIPVKTGLRGASAAVAGFIKSSKPIRPISSMDSSDKDSSSTTTTSETTRRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRVRSSVWKVIDKRPGYNASDSDSESD", "length": 138, "header": "tr|F4ISY9-1|F4ISY9_ARATH Isoform 1 of Sel1 repeat protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ISY9-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B0M8-1", "url": "https://www.uniprot.org/uniprotkb/F4ISY9/entry#A0A1P8B0M8-1", "sequence": { "sequence": "MGKSIPVKTGLRGASAAVAGFIKSSKPIRPISSMDSSDKDSSSTTTTSETTRRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKVSSLFPPFQSLLFQVLGFFSLVDLKIL", "length": 130, "header": "tr|A0A1P8B0M8-1|F4ISY9_ARATH Computationally mapped isoform of Sel1 repeat protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ISY9-1" }, "locus": { "chromosome": "2", "start_pos": 16101926, "end_pos": 16102998, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G38450.2", "url": "https://www.ensemblgenomes.org/id/AT2G38450.2" }, { "database": "Ensembl Peptide", "id": "AT2G38450.2", "url": "https://www.ensemblgenomes.org/id/AT2G38450.2" } ] } }, { "isoform_ac": "F4ISY9-1", "url": "https://www.uniprot.org/uniprotkb/F4ISY9/entry#F4ISY9-1", "sequence": { "sequence": "MGKSIPVKTGLRGASAAVAGFIKSSKPIRPISSMDSSDKDSSSTTTTSETTRRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRVRSSVWKVIDKRPGYNASDSDSESD", "length": 138, "header": "tr|F4ISY9-1|F4ISY9_ARATH Isoform 1 of Sel1 repeat protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ISY9-1" }, "locus": { "chromosome": "2", "start_pos": 16101926, "end_pos": 16102998, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G38450.1", "url": "https://www.ensemblgenomes.org/id/AT2G38450.1" }, { "database": "Ensembl Peptide", "id": "AT2G38450.1", "url": "https://www.ensemblgenomes.org/id/AT2G38450.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0M8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0M8" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0M8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0M8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G38450", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G38450", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4ISY9", "url": "https://www.uniprot.org/uniprotkb/F4ISY9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4ISY9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 138, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4ISY9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4ISY9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IV62-1", "uniprot_ac": "F4IV62", "uniprot_id": "F4IV62_ARATH", "mass": { "chemical_mass": 137914.0, "monoisotopic_mass": 137914.0 }, "refseq": { "ac": "NP_671774", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_671774" }, "gene_names": [], "protein_names": [ { "name": "Knl1 C-terminal RWD domain-containing protein", "type": "recommended", "evidence": [ { "id": "F4IV62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV62/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_671774", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_671774" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT2G04235", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KEPTWSP", "url": "https://omabrowser.org/oma/group/KEPTWSP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR35707", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35707", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35707:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35707:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_671774", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_671774", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G04235", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G04235", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B0P2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B0P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0P2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B0S5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0S5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B0S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0S5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B0U5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B0U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0U5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IV62", "url": "https://www.uniprot.org/uniprotkb/F4IV62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IV62-1", "url": "https://www.uniprot.org/uniprotkb/F4IV62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1253, "header": "tr|F4IV62-1|F4IV62_ARATH Isoform 1 of Knl1 C-terminal RWD domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IV62-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B0P2-1", "url": "https://www.uniprot.org/uniprotkb/F4IV62/entry#A0A1P8B0P2-1", "sequence": { "sequence": "MASEKPEDPMNNTAGIGTDEESIAQRRKRLRRVSFADREITSVHIFNRDEDYETPPNTSAAKPQNGGDTSEPDEDNKVIRFFGELSDREDTDGDGDGEYEPILDKSFLRPKYSPSSGGSTVGSATSDNEDNFFGPVSSHFINPGRLLDTPISEEHHEMTMDSTAFSMHFRSLARSESGDVRTPTSSHLLVEEKTPTEVTSRSDTGSAMVLTEPKKLFPKSPVPVDKGSGGRDSNDMSIVGENSRRYDYGYLSPTLAALMGDESKELLPEDNTVEARSPIDDFSSSLPNGCIPIGLQESGSQRYTKEASLSSSTIRRQSAFLVGMLPQSLSCVTPSPTQGGSFMSRETRALVESLSTIQKSKSRLGLIPPSPGSALSQRIEKSKLQLSGHRFLTTPSIGREEIGVLRDKHADIPITNLEALLSKHDNRTPISEEKSMPDKCISGALSHAVDTSDDNRTPVPEEKGIPDQCISGALSHAVDTSDDNKTPVPEEKGIPDQCSSGALNPAVDTSDDNRTPVQEKKGLPDQCSSGALSPAVDTSDDRPPVSEKKGIPDQHSCGALIPAVDISDVFARRSPEGNTNSEIEGSLLCKQQQRNQAASTPEKFVSSPTNLSNATTSASENFVPLQDQEQHSKDIEKSETGDGNVTKEYASNCSMNTLSEKVDSLLAESSVLLTDTGFLNGSAQQREKDSVRNKKQNRTNISAAHILLKDNNPFKVHCETEVISAEDFTAVAKENLPSTSGSSSVDRSKNEASHAKGPSRLKRKAEDVDCAARNCSPKVERSTKYISNSVMEHPDGNIDANDCRRVREQVNWVEIPGKVSKEINQMLAPLADKLNSRLICKLEDILTHMKKVHLCEMLCLQIQSQKVCDHLSGAKTKRRVESRSLLCKLAYDKAKLELLHLKKEIMMKKFQAVSTGVQTSETLRLNCANFLRQHGFRSTGLLNPDQAQEVIITGKRAEITQEIKEIDSKIKNLIQCFTACDTMTGPQPAYADTIMIAEETLKKRMSCRSLRQDILIWKVDSLGEWNDCQSIVLNYSGVFNQRLTLKPGHPSCVLVSNSLSDTFVKHFPEMNVSIAFNSMFNAEDSRRYIGGSNTLLEITQKTSLLLHNLLDVAEEFHLAQMNIPNLVQGNFDSPSAEQLHLQISFLDCTNLRKLSVILDVTCLIHGKYPSDVVPCEFRKVSGTKRDGVVSKQLKKEIESTIDDVGVGYPRILRLCRCISKALQSEKR", "length": 1227, "header": "tr|A0A1P8B0P2-1|F4IV62_ARATH Computationally mapped isoform of Knl1 C-terminal RWD domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IV62-1" }, "locus": { "chromosome": "2", "start_pos": 1449288, "end_pos": 1455314, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04235.2", "url": "https://www.ensemblgenomes.org/id/AT2G04235.2" }, { "database": "Ensembl Peptide", "id": "AT2G04235.2", "url": "https://www.ensemblgenomes.org/id/AT2G04235.2" } ] } }, { "isoform_ac": "A0A1P8B0S5-1", "url": "https://www.uniprot.org/uniprotkb/F4IV62/entry#A0A1P8B0S5-1", "sequence": { "sequence": "MASEKPEDPMNNTAGIGTDEESIAQRRKRLRRVSFADREITSVHIFNRDEDYETPPNTSAAKPQNGGDTSEPDEDNKVIRFFGELSDREDTDGDGDGEYEPILDKSFLRPKYSPSSGGSTVGSATSDNEDNFFGPVSSHFINPGRLLDTPISEEHHEMTMDSTAFSMHFRSLARSESGDVRTPTSSHLLVEEKTPTEVTSRSDTGSAMVLTEPKKLFPKSPVPVDKGSGGRDSNDMSIVGENSRRYDYGYLSPTLAALMGDESKELLPEDNTVEARSPIDDFSSSLPNGCIPIGLQESGSQRYTKEASLSSSTIRRQSAFLVGMLPQSLSCVTPSPTQGGSFMSRETRALVESLSTIQKSKSRLGLIPPSPGSALSQRIEKSKLQLSGHRFLTTPSIGREEIGVLRDKHADIPITNLEALLSKHDNRTPISEEKSMPDKCISGALSHAVDTSDDNRTPVPEEKGIPDQCISGALSHAVDTSDDNKTPVPEEKGIPDQCSSGALNPAVDTSDDNRTPVQEKKGLPDQCSSGALSPAVDTSDDRPPVSEKKGIPDQHSCGALIPAVDISDVFARRSPEGNTNSEIEGSLLCKQQQRNQAASTPEKFVSSPTNLSNATTSASENFVPLQDQEQHSKDIEKSETGDGNVTKEYASNCSMNTLSEKVDSLLAESSVLLTDTGFLNGSAQQREKDSVRNKKQNRTNISAAHILLKDNNPFKVHCETEVISAEDFTAVAKENLPSTSGSSSVDRSKNEASHAKGPSRLKRKAEDVDCAARNCSPKVERSTKYISNSVMEHPDGNIDANDCRRVREQVNWVEIPGKVSKEINQMLAPLADKLNSRLICKLEDILTHMKKVHLCEMLCLQIQSQKVCDHLSGAKTKRRVESRSLLCKLAYDKAKLELLHLKKEIMMKKFQAVSTGVQTSETLRLNCANFLRQHGFRSTGLLNPDQAQEVIITGKRAEITQEIKEIDSKIKNLIQCFTACDTMTGPQPAYADTIMIAEETLKKRMSCRSLRQDILIWKVDSLGEWNDCQSIVLNYSGVFNQRLTLKPGHPSCVLVSNSLSDTFVKHFPEMNVSIAFNSMFNAEDSRRYIGGSNTLLEITQTSEVFLILLRGYRKPVCSYTIC", "length": 1122, "header": "tr|A0A1P8B0S5-1|F4IV62_ARATH Computationally mapped isoform of Knl1 C-terminal RWD domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IV62-1" }, "locus": { "chromosome": "2", "start_pos": 1449414, "end_pos": 1455237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04235.4", "url": "https://www.ensemblgenomes.org/id/AT2G04235.4" }, { "database": "Ensembl Peptide", "id": "AT2G04235.4", "url": "https://www.ensemblgenomes.org/id/AT2G04235.4" } ] } }, { "isoform_ac": "A0A1P8B0U5-1", "url": "https://www.uniprot.org/uniprotkb/F4IV62/entry#A0A1P8B0U5-1", "sequence": { "sequence": "MASEKPEDPMNNTAGIGTDEESIAQRRKRLRRVSFADREITSVHIFNRDEDYETPPNTSAAKPQNGGDTSEPDEDNKVIRFFGELSDREDTDGDGDGEYEPILDKSFLRPKYSPSSGGSTVGSATSDNEDNFFGPVSSHFINPGRLLDTPISEEHHEMTMDSTAFSMHFRSLARSESGDVRTPTSSHLLVEEKTPTEVTSRSDTGSAMVLTEPKKLFPKSPVPVDKGSGGRDSNDMSIVGENSRRYDYGYLSPTLAALMGDESKELLPEDNTVEARSPIDDFSSSLPNGCIPIGLQESGSQRYTKEASLSSSTIRRQSAFLVGMLPQSLSCVTPSPTQGGSFMSRETRALVESLSTIQKSKSRLGLIPPSPGSALSQRIEKSKLQLSGHRFLTTPSIGREEIGVLRDKHADIPITNLEALLSKHDNRTPISEEKSMPDKCISGALSHAVDTSDDNRTPVPEEKGIPDQCISGALSHAVDTSDDNKTPVPEEKGIPDQCSSGALNPAVDTSDDNRTPVQEKKGLPDQCSSGALSPAVDTSDDRPPVSEKKGIPDQHSCGALIPAVDISDVFARRSPEGNTNSEIEGSLLCKQQQRNQAASTPEKFVSSPTNLSNATTSASENFVPLQDQEQHSKDIEKSETGDGNVTKEYASNCSMNTLSEKVDSLLAESSVLLTDTGFLNGSAQQREKDSVRNKKQNRTNISAAHILLKDNNPFKVHCETEVISAEDFTAVAKENLPSTSGSSSVDRSKNEASHAKGPSRLKRKAEDVDCAARNCSPKVERSTKYISNSVMEHPDGNIDANDCRRVREQVNWVEIPGKVSKEINQMLAPLADKLNSRLICKLEDILTHMKKVHLCEMLCLQIQSQKVCDHLSGAKTKRRVESRSLLCKLAYDKAKLELLHLKKEIMMKKFQAVSTGVQTSETLRLNCANFLRQHGFRSTGLLNPDQAQEVIITGKRAEITQEIKEIDSKIKNLIQCFTACDTMTGPQPAYADTIMIAEETLKKRMSCRSLRQDILIWKVDSLGEWNDCQSIVLNYSGVFNQRLTLKPGHPSCVLVSNSLSDTFVKHFPEMNVSIAFNSMFNAEDSRRYIGGSNTLLEITQKTSLLLHNLLDVAEEFHLAQMNIPNLVQGNFDSPSGDLFSSSHFSLGQTSLTVVANKCAI", "length": 1160, "header": "tr|A0A1P8B0U5-1|F4IV62_ARATH Computationally mapped isoform of Knl1 C-terminal RWD domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IV62-1" }, "locus": { "chromosome": "2", "start_pos": 1449340, "end_pos": 1455304, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04235.3", "url": "https://www.ensemblgenomes.org/id/AT2G04235.3" }, { "database": "Ensembl Peptide", "id": "AT2G04235.3", "url": "https://www.ensemblgenomes.org/id/AT2G04235.3" } ] } }, { "isoform_ac": "F4IV62-1", "url": "https://www.uniprot.org/uniprotkb/F4IV62/entry#F4IV62-1", "sequence": { "sequence": "MASEKPEDPMNNTAGIGTDEESIAQRRKRLRRVSFADREITSVHIFNRDEDYETPPNTSAAKPQNGGDTSEPDEDNKVIRFFGELSDREDTDGDGDGEYEPILDKSFLRPKYSPSSGGSTVGSATSDNGTLQLLCEFRVLFFEFLAESILFSLPEDNFFGPVSSHFINPGRLLDTPISEEHHEMTMDSTAFSMHFRSLARSESGDVRTPTSSHLLVEEKTPTEVTSRSDTGSAMVLTEPKKLFPKSPVPVDKGSGGRDSNDMSIVGENSRRYDYGYLSPTLAALMGDESKELLPEDNTVEARSPIDDFSSSLPNGCIPIGLQESGSQRYTKEASLSSSTIRRQSAFLVGMLPQSLSCVTPSPTQGGSFMSRETRALVESLSTIQKSKSRLGLIPPSPGSALSQRIEKSKLQLSGHRFLTTPSIGREEIGVLRDKHADIPITNLEALLSKHDNRTPISEEKSMPDKCISGALSHAVDTSDDNRTPVPEEKGIPDQCISGALSHAVDTSDDNKTPVPEEKGIPDQCSSGALNPAVDTSDDNRTPVQEKKGLPDQCSSGALSPAVDTSDDRPPVSEKKGIPDQHSCGALIPAVDISDVFARRSPEGNTNSEIEGSLLCKQQQRNQAASTPEKFVSSPTNLSNATTSASENFVPLQDQEQHSKDIEKSETGDGNVTKEYASNCSMNTLSEKVDSLLAESSVLLTDTGFLNGSAQQREKDSVRNKKQNRTNISAAHILLKDNNPFKVHCETEVISAEDFTAVAKENLPSTSGSSSVDRSKNEASHAKGPSRLKRKAEDVDCAARNCSPKVERSTKYISNSVMEHPDGNIDANDCRRVREQVNWVEIPGKVSKEINQMLAPLADKLNSRLICKLEDILTHMKKVHLCEMLCLQIQSQKVCDHLSGAKTKRRVESRSLLCKLAYDKAKLELLHLKKEIMMKKFQAVSTGVQTSETLRLNCANFLRQHGFRSTGLLNPDQAQEVIITGKRAEITQEIKEIDSKIKNLIQCFTACDTMTGPQPAYADTIMIAEETLKKRMSCRSLRQDILIWKVDSLGEWNDCQSIVLNYSGVFNQRLTLKPGHPSCVLVSNSLSDTFVKHFPEMNVSIAFNSMFNAEDSRRYIGGSNTLLEITQKTSLLLHNLLDVAEEFHLAQMNIPNLVQGNFDSPSAEQLHLQISFLDCTNLRKLSVILDVTCLIHGKYPSDVVPCEFRKVSGTKRDGVVSKQLKKEIESTIDDVGVGYPRILRLCRCISKALQSEKR", "length": 1253, "header": "tr|F4IV62-1|F4IV62_ARATH Isoform 1 of Knl1 C-terminal RWD domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IV62-1" }, "locus": { "chromosome": "2", "start_pos": 1449414, "end_pos": 1455237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G04235.1", "url": "https://www.ensemblgenomes.org/id/AT2G04235.1" }, { "database": "Ensembl Peptide", "id": "AT2G04235.1", "url": "https://www.ensemblgenomes.org/id/AT2G04235.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 363, "start_aa": "Thr", "end_pos": 363, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr363", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 402, "end_pos": 402, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0U5" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "iPTMnet", "id": "F4IV62", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IV62" } ], "site_lbl": "Ser402" }, { "start_pos": 600, "end_pos": 600, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0U5" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "iPTMnet", "id": "F4IV62", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IV62" } ], "site_lbl": "Ser600" }, { "start_pos": 605, "end_pos": 605, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B0U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B0U5" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "F4IV62", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IV62" } ], "site_lbl": "Thr605" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0P2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0P2" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0P2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0P2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G04235", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G04235", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IV62", "url": "https://www.uniprot.org/uniprotkb/F4IV62" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "F4IV62", "url": "https://www.uniprot.org/uniprotkb/F4IV62" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1060, "end_pos": 1062, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1097, "end_pos": 1099, "annotation": "n_glycosylation_sequon" }, { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 539, "end_pos": 541, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 636, "end_pos": 638, "annotation": "n_glycosylation_sequon" }, { "start_pos": 639, "end_pos": 641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 670, "end_pos": 672, "annotation": "n_glycosylation_sequon" }, { "start_pos": 678, "end_pos": 680, "annotation": "n_glycosylation_sequon" }, { "start_pos": 706, "end_pos": 708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 723, "end_pos": 725, "annotation": "n_glycosylation_sequon" }, { "start_pos": 726, "end_pos": 728, "annotation": "n_glycosylation_sequon" }, { "start_pos": 800, "end_pos": 802, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IV62-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1253, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IV62-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IV62" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IV62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV62" }, { "id": "PF18210", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18210" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Knl1 C-terminal RWD", "eco_id": "ECO_0000259", "start_pos": 984, "end_pos": 1138, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 363 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 402, 600, 605 ], "sequon_annotation_sites": [ { "start_pos": 1060, "end_pos": 1062 }, { "start_pos": 1097, "end_pos": 1099 }, { "start_pos": 11, "end_pos": 13 }, { "start_pos": 128, "end_pos": 130 }, { "start_pos": 452, "end_pos": 454 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 510, "end_pos": 512 }, { "start_pos": 539, "end_pos": 541 }, { "start_pos": 57, "end_pos": 59 }, { "start_pos": 636, "end_pos": 638 }, { "start_pos": 639, "end_pos": 641 }, { "start_pos": 670, "end_pos": 672 }, { "start_pos": 678, "end_pos": 680 }, { "start_pos": 706, "end_pos": 708 }, { "start_pos": 723, "end_pos": 725 }, { "start_pos": 726, "end_pos": 728 }, { "start_pos": 800, "end_pos": 802 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": 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"categories": [ "Protein", "Organism-specific" ] }, { "id": "818515", "url": "https://www.ncbi.nlm.nih.gov/gene/818515", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR056070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G39300", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G39300", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNASRNH", "url": "https://omabrowser.org/oma/group/CNASRNH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B0U3", "url": "https://www.orthodb.org/?gene=A0A1P8B0U3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IUY1", "url": "https://www.orthodb.org/?gene=F4IUY1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47491", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47491", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47491:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47491:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24670", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24670", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_181462", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_181462", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G39300", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G39300", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B0U3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0U3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B0U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0U3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IUY1", "url": 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"MKKLFFFKSSSGNGTDHNKQLHKQKDDHFQRYLNSPKGLNKSQSEVSGAALRRSRSLSSAAFVIDGTSSNQHRLRNHSSRCLTPERQFKEYGSMSTCSSNVSSQVLDRYIDGEEHLERSKQKSGSLHSSSLSGSRRRLPPRAQSPSPLSESGKDKRKSKGLRDASARSLARSVIERLSHNTQGKSKALSYEPIRIQDVCGKILDSNSDVLANVVVPLTEEYEPVNEYYPDDQTELQYQQFFLHGKDMCKEDDVSSELEKRYKEAEKRVKLLSEEMEEKKFLSDCDFDISSLVGDIRQMEEERVGLAFEVLSLLRSQMDERASTREDIRRVKNDWDLLLKRLEKEKTELQVQLETELDRRSSEWTSKVESFKVEEKRLRERVRELAEHNVSLQREISTFHEKETERIDMIRHLDETVTELSATAEEMREENLFLMQNLSKLQESYTGSTDDLDYVRRNFEEKDMECKELHKSVTRLLRTCKEQEKTIQGLRDGFSEEIKKQPSEHVDKKLQMEQLRLVGVELSLRKEVESMKLEAESLRRENNCLLNRVKGNGEEADIMTTFKLDNEMKMRVCHLQDQGISMLNESTQLCYKFLKIIKEKSVNSGWSEQFLIESEMRVHGIRRGTESLKRSLQTVTSLLLEKSNEMASNSESSCSSAARPSSRSVEKSLRAELRAETLVTSLLREKLYSKEQEIEQLHAEVAAGVRGNEVLQCEIQNVLDNLSLNNHQLKDLKLQMVKKDENINRMEINLQEAAKELLTLPKVLEEREEMWKEVKECRKRNMDLESEKEMLKKKVEKLEEDTLFKEGQITILKDTLGSRHFDLLLSSPEFSYNDFLVQ", "length": 837, "header": "tr|F4IUY1-1|F4IUY1_ARATH Isoform 1 of CAP-gly domain linker OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUY1-1" }, 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"tr|A0A1P8B0U3-1|F4IUY1_ARATH Computationally mapped isoform of CAP-gly domain linker OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUY1-1" }, "locus": { "chromosome": "2", "start_pos": 16409539, "end_pos": 16413874, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G39300.3", "url": "https://www.ensemblgenomes.org/id/AT2G39300.3" }, { "database": "Ensembl Peptide", "id": "AT2G39300.3", "url": "https://www.ensemblgenomes.org/id/AT2G39300.3" } ] } }, { "isoform_ac": "F4IUY1-1", "url": "https://www.uniprot.org/uniprotkb/F4IUY1/entry#F4IUY1-1", "sequence": { "sequence": "MKKLFFFKSSSGNGTDHNKQLHKQKDDHFQRYLNSPKGLNKSQSEVSGAALRRSRSLSSAAFVIDGTSSNQHRLRNHSSRCLTPERQFKEYGSMSTCSSNVSSQVLDRYIDGEEHLERSKQKSGSLHSSSLSGSRRRLPPRAQSPSPLSESGKDKRKSKGLRDASARSLARSVIERLSHNTQGKSKALSYEPIRIQDVCGKILDSNSDVLANVVVPLTEEYEPVNEYYPDDQTELQYQQFFLHGKDMCKEDDVSSELEKRYKEAEKRVKLLSEEMEEKKFLSDCDFDISSLVGDIRQMEEERVGLAFEVLSLLRSQMDERASTREDIRRVKNDWDLLLKRLEKEKTELQVQLETELDRRSSEWTSKVESFKVEEKRLRERVRELAEHNVSLQREISTFHEKETERIDMIRHLDETVTELSATAEEMREENLFLMQNLSKLQESYTGSTDDLDYVRRNFEEKDMECKELHKSVTRLLRTCKEQEKTIQGLRDGFSEEIKKQPSEHVDKKLQMEQLRLVGVELSLRKEVESMKLEAESLRRENNCLLNRVKGNGEEADIMTTFKLDNEMKMRVCHLQDQGISMLNESTQLCYKFLKIIKEKSVNSGWSEQFLIESEMRVHGIRRGTESLKRSLQTVTSLLLEKSNEMASNSESSCSSAARPSSRSVEKSLRAELRAETLVTSLLREKLYSKEQEIEQLHAEVAAGVRGNEVLQCEIQNVLDNLSLNNHQLKDLKLQMVKKDENINRMEINLQEAAKELLTLPKVLEEREEMWKEVKECRKRNMDLESEKEMLKKKVEKLEEDTLFKEGQITILKDTLGSRHFDLLLSSPEFSYNDFLVQ", "length": 837, "header": "tr|F4IUY1-1|F4IUY1_ARATH Isoform 1 of CAP-gly domain linker OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUY1-1" }, "locus": { "chromosome": "2", "start_pos": 16409539, "end_pos": 16413206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G39300.4", "url": "https://www.ensemblgenomes.org/id/AT2G39300.4" }, { "database": "Ensembl Peptide", "id": "AT2G39300.4", "url": "https://www.ensemblgenomes.org/id/AT2G39300.4" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 56, "end_pos": 56, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUY1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUY1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser56" }, { "start_pos": 785, "end_pos": 785, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUY1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUY1" } ], "site_lbl": "Ser785" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0U3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0U3" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IUY1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUY1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B0U3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B0U3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G39300", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G39300", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IUY1", "url": "https://www.uniprot.org/uniprotkb/F4IUY1" } ], "pmid": "" }, { "name": "plant-type vacuole", "id": "GO:0000325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000325", "evidence": [ { "database": "UniProtKB", "id": "F4IUY1", "url": "https://www.uniprot.org/uniprotkb/F4IUY1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 13, "end_pos": 15, 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"type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G33793", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G33793", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IFY5", "url": "https://www.uniprot.org/uniprotkb/F4IFY5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", "evidence": [ { "database": "UniProtKB", "id": "F4IFY5", "url": "https://www.uniprot.org/uniprotkb/F4IFY5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "reciprocal meiotic recombination", "id": 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"Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4ICK6", "locus": {} } ], "crossref": [ { "id": "F4ICK6", "url": "https://alphafold.ebi.ac.uk/entry/F4ICK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G32120", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G32120", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "840104", "url": "https://www.ncbi.nlm.nih.gov/gene/840104", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019557", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019557", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G32120", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G32120", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "REALMCP", "url": "https://omabrowser.org/oma/group/REALMCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46033", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46033", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46033:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46033:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G32120", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G32120", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4ICK6", "url": "https://www.uniprot.org/uniprotkb/F4ICK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ICK6-1", "url": "https://www.uniprot.org/uniprotkb/F4ICK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEESRGSSDQEDEQIVQVREALMCPDGEKFESLRTARFLNYTTASIDDDVFDLPLDAFVCRPPEGFDPTAKISFPGWGTPSLNWIEWVNVMAKSHATVWKKSGVYDAILASRYQIKRHDDLIVALVEKWCIETNTFVFPWGEATLTLEDMIVLGGLSVTGNNALAPVKRDGMKEVEEKMKEAKRYIEVSLEKKCCVSMWMKEMMNSGNEIEHEAFMVSWLSRFVFTNSGDVLREKLFPAAVQLAKGVRLALAPAVLARIYGDLGVLKEFLTGYSEKETVVVKSPFQFVQVWALERFMALQPPGQPSQLKTGEPRIARWHHYGGGQDVYGYPENIRAVLDSAKESFDYRPYTKPVNNFRFPKFYFEDDCWVRVRPDENIVAFGRCLRFAKLVGLDCIEPYYPHRVALQFGYDQDVPGVVPARIETPELAWKDYIRPIADGMLYFPARLHEADVTVGYIRWWKLSVAVLQLGAEKIFKTLLASHSKQKPVTTTTTAATTPTKVTKKISAAKAEGKDQEVVKKREIETKRETSVTGSSIEVSRADGRSHGSSSYAGSLTGSEQATKHPFKKPEWVQRSSHRPKKSPDRSSDEPEWVETSSARSTKSPARSSDNLKWVQRSSPRSTKSPDRSSGRAADDVKDLKGALRGSGGTKSQGHVTFQLPSSPGRSPSKTHTFSPKQSDSPVKKPNMLPRVADLAKQSSSSPWVPRHTSSVAHPPKQENYIKHHNSTSSRVSKESNRTPSVSSYPLKRKTSQRSPEAINSRGQKNPPSPRVSKEPYMSSSLSVSSSSTRKKPPRSHEAANSRGYNHTPSLRASKEPYKSSSLSGSSSTRKKPPRSHEASSSRGYNHPPSPRVSKELNKTPSISGSPSATRNKSPRSSENVNSCGNSSSGGNSVVKRNTDTSIIVSKQESPIKTQLDISKANKLLEEVVTLREQVGEDGEVTYQIPKQQFEDLSKGVHNVLHDLQSIKFALNIQDNDDA", "length": 978, "header": "tr|F4ICK6-1|F4ICK6_ARATH Isoform 1 of Serine/threonine-protein phosphatase 7 long form-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ICK6-1" }, "isoforms": [ { "isoform_ac": "F4ICK6-1", "url": "https://www.uniprot.org/uniprotkb/F4ICK6/entry#F4ICK6-1", "sequence": { "sequence": "MEESRGSSDQEDEQIVQVREALMCPDGEKFESLRTARFLNYTTASIDDDVFDLPLDAFVCRPPEGFDPTAKISFPGWGTPSLNWIEWVNVMAKSHATVWKKSGVYDAILASRYQIKRHDDLIVALVEKWCIETNTFVFPWGEATLTLEDMIVLGGLSVTGNNALAPVKRDGMKEVEEKMKEAKRYIEVSLEKKCCVSMWMKEMMNSGNEIEHEAFMVSWLSRFVFTNSGDVLREKLFPAAVQLAKGVRLALAPAVLARIYGDLGVLKEFLTGYSEKETVVVKSPFQFVQVWALERFMALQPPGQPSQLKTGEPRIARWHHYGGGQDVYGYPENIRAVLDSAKESFDYRPYTKPVNNFRFPKFYFEDDCWVRVRPDENIVAFGRCLRFAKLVGLDCIEPYYPHRVALQFGYDQDVPGVVPARIETPELAWKDYIRPIADGMLYFPARLHEADVTVGYIRWWKLSVAVLQLGAEKIFKTLLASHSKQKPVTTTTTAATTPTKVTKKISAAKAEGKDQEVVKKREIETKRETSVTGSSIEVSRADGRSHGSSSYAGSLTGSEQATKHPFKKPEWVQRSSHRPKKSPDRSSDEPEWVETSSARSTKSPARSSDNLKWVQRSSPRSTKSPDRSSGRAADDVKDLKGALRGSGGTKSQGHVTFQLPSSPGRSPSKTHTFSPKQSDSPVKKPNMLPRVADLAKQSSSSPWVPRHTSSVAHPPKQENYIKHHNSTSSRVSKESNRTPSVSSYPLKRKTSQRSPEAINSRGQKNPPSPRVSKEPYMSSSLSVSSSSTRKKPPRSHEAANSRGYNHTPSLRASKEPYKSSSLSGSSSTRKKPPRSHEASSSRGYNHPPSPRVSKELNKTPSISGSPSATRNKSPRSSENVNSCGNSSSGGNSVVKRNTDTSIIVSKQESPIKTQLDISKANKLLEEVVTLREQVGEDGEVTYQIPKQQFEDLSKGVHNVLHDLQSIKFALNIQDNDDA", "length": 978, "header": "tr|F4ICK6-1|F4ICK6_ARATH Isoform 1 of Serine/threonine-protein phosphatase 7 long form-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ICK6-1" }, "locus": { "chromosome": "1", "start_pos": 11552426, "end_pos": 11556391, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G32120.1", "url": "https://www.ensemblgenomes.org/id/AT1G32120.1" }, { "database": "Ensembl Peptide", "id": "AT1G32120.1", "url": "https://www.ensemblgenomes.org/id/AT1G32120.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 79, "start_aa": "Thr", "end_pos": 79, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr79", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 779, "end_pos": 779, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ICK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICK6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser779" }, { "start_pos": 780, "end_pos": 780, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ICK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICK6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser780" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4ICK6", "url": "https://www.uniprot.org/uniprotkb/F4ICK6" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4ICK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ICK6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4ICK6", "url": "https://www.uniprot.org/uniprotkb/F4ICK6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G32120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G32120", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4ICK6", "url": "https://www.uniprot.org/uniprotkb/F4ICK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "meristem maintenance", "id": "GO:0010073", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010073", "evidence": [ { "database": "UniProtKB", "id": "F4ICK6", "url": "https://www.uniprot.org/uniprotkb/F4ICK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 725, "end_pos": 727, "annotation": "n_glycosylation_sequon" }, { "start_pos": 736, "end_pos": 738, "annotation": "n_glycosylation_sequon" }, { "start_pos": 805, "end_pos": 807, "annotation": "n_glycosylation_sequon" }, { "start_pos": 857, "end_pos": 859, "annotation": "n_glycosylation_sequon" }, { "start_pos": 871, "end_pos": 873, "annotation": "n_glycosylation_sequon" }, { "start_pos": 885, "end_pos": 887, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4ICK6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 978, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4ICK6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4ICK6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4ICK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ICK6" }, { "id": "PF10536", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10536" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminotransferase-like plant mobile", "eco_id": "ECO_0000259", "start_pos": 103, "end_pos": 461, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 79 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 779, 780 ], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 }, { "start_pos": 725, "end_pos": 727 }, { "start_pos": 736, "end_pos": 738 }, { "start_pos": 805, "end_pos": 807 }, { "start_pos": 857, "end_pos": 859 }, { "start_pos": 871, "end_pos": 873 }, { "start_pos": 885, "end_pos": 887 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4ICM0-1", "uniprot_ac": "F4ICM0", "uniprot_id": "F4ICM0_ARATH", "mass": { "chemical_mass": 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D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4ID71", "url": "https://www.uniprot.org/uniprotkb/F4ID71" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4ID71", "url": "https://www.uniprot.org/uniprotkb/F4ID71" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G66045", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G66045", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4ID71", "url": "https://www.uniprot.org/uniprotkb/F4ID71" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F4ID71", "url": "https://www.uniprot.org/uniprotkb/F4ID71" } ], "pmid": "" }, { "name": "RNA-DNA hybrid ribonuclease activity", "id": "GO:0004523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004523", "evidence": [ { "database": "UniProtKB", "id": "F4ID71", "url": "https://www.uniprot.org/uniprotkb/F4ID71" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4ID71-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 144, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4ID71-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4ID71" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4ID71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ID71" }, { "id": "PF13456", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13456" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase H type-1", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 134, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 22, "end_pos": 24 }, { "start_pos": 32, "end_pos": 34 }, { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IDB4-1", "uniprot_ac": "F4IDB4", "uniprot_id": "F4IDB4_ARATH", "mass": { "chemical_mass": 130002.0, "monoisotopic_mass": 130002.0 }, "refseq": { "ac": "NP_177385", "name": "COP1-interacting protein-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_177385" }, "gene_names": [ { "name": "T10D10.12", "type": "synonym", "evidence": [ { "id": "NP_177385", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_177385" }, { "id": "F4IDB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDB4" } ] }, { "name": "T10D10_12", "type": "synonym", "evidence": [ { "id": "NP_177385", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_177385" }, { "id": "F4IDB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDB4" } ] } ], "protein_names": [ { "name": "COP1-interacting protein-like protein", "type": "synonym", "evidence": [ { "id": "NP_177385", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_177385" }, { "id": "F4IDB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDB4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IDB4", "url": "https://www.uniprot.org/uniprotkb/F4IDB4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IDB4", "locus": {} } ], "crossref": [ { "id": "F4IDB4", "url": "https://alphafold.ebi.ac.uk/entry/F4IDB4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G72410", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G72410", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "843573", "url": "https://www.ncbi.nlm.nih.gov/gene/843573", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT1G72410", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G72410", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKMFMEA", "url": "https://omabrowser.org/oma/group/GKMFMEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31008", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31008", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31008:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31008:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_177385", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_177385", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G72410", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G72410", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IDB3", "url": "https://www.uniprot.org/uniprotkb/F4IDB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDB3-1", "url": "https://www.uniprot.org/uniprotkb/F4IDB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDB4", "url": "https://www.uniprot.org/uniprotkb/F4IDB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDB4-1", "url": "https://www.uniprot.org/uniprotkb/F4IDB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSDTVLDYVVFELSPKHSKCELFVSSNEQTEKLASGLIQPFVNHLKVLEAKASPVAQSSIRLEVEKSNTWFTKRTLERFVQFVNSPETLEKVNTYYSEMLQLEAARTLYSQRSEDSKFGASDDGAAADATKKELLKAIDLRLEAIKKDLTTSISHASASGFDPHTVSELKQFADRFSAHHLDEACSKYISLWKQRPDLIDMKYSNQLAGVDNVSLQKDSTRQKQNAVNESEHQIQQCATTSTKRNEEEKTDDSLDVTSSTVKTTQHTRRLSVQDRINLFENKQKENSPSGGSKPVAVTKSTELRRLSSDVSSSEKPILRRSSIVSDMSTDLASEKKLESFPEDPSSTSSSLPHTIAQPNFNESVKKDDEVKYELKSDSEKVGDEEASRDRVESSKTVTETRLVSGVEATSYVQSRSVIDPNVSSASQNQTERHVDRLQNVMSDAKSRQREEGYEHKANNVSQSSAMFPSRHTRSQSAHIEASFKEDVASQPQSRYSFGRIKKKEVVPSDEQPVLPQKPQFNVRDGPDDGEGRQVRANSSRFPPASVDQIQRTRLSKENPGANDELKLKANELEKLFAEHQLRVPGDQSSSSRRGKSSENQVAHKEPSHSIAATEKRLSLGGGSADFSKLMTPLVGDKDKGDALRRNLSDLSLTDDSKGKFYEKYMKKRDAKLREEWSLKKGEKETKLKSMQEALEQSRTEMKAKLSASSSERKDLLSSTRQRAEKFRSFNSRSSMKKYQSEEDEDISEQKPRAKDKAASGQQSVGSISSRSSQARKLQPNRNMSSSITPRSAASVPKPSGKVSNTSSGRRRSDKSLAQSVPNFSELIKENTKPSSLAVKTTMRSQVKSSGRTKNIKEDTLLQRPRSLRKSSSGNIDFTELSTLCSDDMMVSLRVDSDISETLRNEEYDEPEAEPEEVLENAVREEEEVEELETLVFEDGNPMLSEAYEKVDHSGEENCSFLPATVPTTLLASLMDSPGESPLSWNANLQHSFSYPHEHSSDVDASVDSPTGSPASWSSRMRKKWGTAQTPVTVAAANNMSQYQSKKDLSKGFKRLLKFGRKSRGAESLMMDWVSVTTSEGDDEVEDRRDFADRSSEDLRKSRMGSLQNHLSEDGFNESEFPEQASNTELKDDHQMSGSNFKAQKSFFSLSTFRGKGNDSKPR", "length": 1163, "header": "tr|F4IDB4-1|F4IDB4_ARATH Isoform 1 of COP1-interacting protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IDB4-1" }, "isoforms": [ { "isoform_ac": "F4IDB3-1", "url": "https://www.uniprot.org/uniprotkb/F4IDB4/entry#F4IDB3-1", "sequence": { "sequence": "MRSDTVLDYVVFELSPKHSKCELFVSSNEQTEKLASGLIQPFVNHLKVLEAKASPVAQSSIRLEVEKSNTWFTKRTLERFVQFVNSPETLEKVNTYYSEMLQLEAARTLYSQRSEDSKFGASDDGAAADATKKELLKAIDLRLEAIKKDLTTSISHASASGFDPHTVSELKQFADRFSAHHLDEACSKYISLWKQRPDLIDMKYSNQLAGVDNVSLQKDSTRQKQNAVNESEHQIQQCATTSTKRNEEEKTDDSLDVTSSTVKTTQHTRRLSVQDRINLFENKQKENSPSGGSKPVAVTKSTELRRLSSDVSSSEKPILRRSSIVSDMSTDLASEKKLESFPEDPSSTSSSLPHTIAQPNFNESVKKDDEVKYELKSDSEKVGDEEASRDRVESSKTVTETRLVSGVEATSYVQSRSVIDPNVSSASQNQTERHVDRLQNVMSDAKSRQREEGYEHKANNVSQSSAMFPSRHTRSQSAHIEASFKEDVASQPQSRYSFGRIKKKEVVPSDEQPVLPQKPQFNVRDGPDDGEGRQVRANSSRFPPASVDQIQRTRLSKENPGANDELKLKANELEKLFAEHQLRVPGDQSSSSRRGKSSENQVAHKEPSHSIAATEKRLSLGGGSADFSKLMTPLVGDKDKGDALRRNLSDLSLTDDSKGKFYEKYMKKRDAKLREEWSLKKGEKETKLKSMQEALEQSRTEMKAKLSASSSERKDLLSSTRQRAEKFRSFNSRSSMKKYQSEEDEDISEQKPRAKDKAASGQQSVGSISSRSSQARKLQPNRNMSSSITPRSAASVPKPSGKVSNTSSGRRRSDKSLAQSVPNFSELIKENTKPSSLAVKTTMRSQVKSSGRTKNIKEDTLLQRPRSLRKSSSGNIDFTELSTLCSDDMMVSLRVDSDISETLRNEEYDEPEAEPEEVLENAVREEEEVEELETLVFEDGNPMLSEAYEKVDHSGEENCSFLPATVPTTLLASLMDSPGESPLSWNANLQHSFSYPHEHSSDVDASVDSPTGSPASWSSRMRKKWGTAQTPVTVAAANNMSQYQSKKDLSKGFKRLLKFGRKSRGAESLMMDWVSVTTSEGDDEVEDRRDFADRSSEDLRKSRMGSLQNHLSEDGFNESEFPEQAQKSFFSLSTFRGKGNDSKPR", "length": 1145, "header": "tr|F4IDB3-1|F4IDB4_ARATH Computationally mapped isoform of COP1-interacting protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IDB4-1" }, "locus": { "chromosome": "1", "start_pos": 27251710, "end_pos": 27257081, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G72410.2", "url": "https://www.ensemblgenomes.org/id/AT1G72410.2" }, { "database": "Ensembl Peptide", "id": "AT1G72410.2", "url": "https://www.ensemblgenomes.org/id/AT1G72410.2" } ] } }, { "isoform_ac": "F4IDB4-1", "url": "https://www.uniprot.org/uniprotkb/F4IDB4/entry#F4IDB4-1", "sequence": { "sequence": "MRSDTVLDYVVFELSPKHSKCELFVSSNEQTEKLASGLIQPFVNHLKVLEAKASPVAQSSIRLEVEKSNTWFTKRTLERFVQFVNSPETLEKVNTYYSEMLQLEAARTLYSQRSEDSKFGASDDGAAADATKKELLKAIDLRLEAIKKDLTTSISHASASGFDPHTVSELKQFADRFSAHHLDEACSKYISLWKQRPDLIDMKYSNQLAGVDNVSLQKDSTRQKQNAVNESEHQIQQCATTSTKRNEEEKTDDSLDVTSSTVKTTQHTRRLSVQDRINLFENKQKENSPSGGSKPVAVTKSTELRRLSSDVSSSEKPILRRSSIVSDMSTDLASEKKLESFPEDPSSTSSSLPHTIAQPNFNESVKKDDEVKYELKSDSEKVGDEEASRDRVESSKTVTETRLVSGVEATSYVQSRSVIDPNVSSASQNQTERHVDRLQNVMSDAKSRQREEGYEHKANNVSQSSAMFPSRHTRSQSAHIEASFKEDVASQPQSRYSFGRIKKKEVVPSDEQPVLPQKPQFNVRDGPDDGEGRQVRANSSRFPPASVDQIQRTRLSKENPGANDELKLKANELEKLFAEHQLRVPGDQSSSSRRGKSSENQVAHKEPSHSIAATEKRLSLGGGSADFSKLMTPLVGDKDKGDALRRNLSDLSLTDDSKGKFYEKYMKKRDAKLREEWSLKKGEKETKLKSMQEALEQSRTEMKAKLSASSSERKDLLSSTRQRAEKFRSFNSRSSMKKYQSEEDEDISEQKPRAKDKAASGQQSVGSISSRSSQARKLQPNRNMSSSITPRSAASVPKPSGKVSNTSSGRRRSDKSLAQSVPNFSELIKENTKPSSLAVKTTMRSQVKSSGRTKNIKEDTLLQRPRSLRKSSSGNIDFTELSTLCSDDMMVSLRVDSDISETLRNEEYDEPEAEPEEVLENAVREEEEVEELETLVFEDGNPMLSEAYEKVDHSGEENCSFLPATVPTTLLASLMDSPGESPLSWNANLQHSFSYPHEHSSDVDASVDSPTGSPASWSSRMRKKWGTAQTPVTVAAANNMSQYQSKKDLSKGFKRLLKFGRKSRGAESLMMDWVSVTTSEGDDEVEDRRDFADRSSEDLRKSRMGSLQNHLSEDGFNESEFPEQASNTELKDDHQMSGSNFKAQKSFFSLSTFRGKGNDSKPR", 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"PF06414", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06414", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G06750", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G06750", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IDR5", "url": "https://www.uniprot.org/uniprotkb/F4IDR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDR5-1", "url": "https://www.uniprot.org/uniprotkb/F4IDR5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDR6", "url": "https://www.uniprot.org/uniprotkb/F4IDR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDR6-1", "url": "https://www.uniprot.org/uniprotkb/F4IDR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRGEVFDITEYSGNRTSTYSQILVVSSIGLMIAAAVHYRLRRLRDTKIIPRLKSSHKHKGHEKLERFSHYVARQMGFKDRRECPNLCKLAAEYISKSECCEEDIYSFFSEEPDADTLFIKLVEEFERCILSYFAFHWSHADLMITQVLSADAEPKRKLKQIVMAATRELRIKRVTKNLKVARVFNTLVEEMRAMGLASVDDSQCTEVMAPVAHKDRSPVLLLMGGGMGAGKSTVLKDILKEAFWAGADSVVIEADAFKESDVIYRALSSRGHVDMIQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHHYRMGAGYKVGDDGVITENYWERIGERQQIQEDGRRRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVRSQLRSHKRFAEAFPTYCSLVDNARLYCTNALEGSPKLIGWKEKEKTLLVDTEEIDCLKRVGGLNENAGSIYELYRQPNPACEAGSIWKDIVLSPSRFSIQQELKYSIQKVEKRSKQHLINNTKS", "length": 526, "header": "tr|F4IDR5-1|F4IDR5_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IDR5-1" }, "isoforms": [ { "isoform_ac": "F4IDR5-1", "url": "https://www.uniprot.org/uniprotkb/F4IDR5/entry#F4IDR5-1", "sequence": { "sequence": "MQRGEVFDITEYSGNRTSTYSQILVVSSIGLMIAAAVHYRLRRLRDTKIIPRLKSSHKHKGHEKLERFSHYVARQMGFKDRRECPNLCKLAAEYISKSECCEEDIYSFFSEEPDADTLFIKLVEEFERCILSYFAFHWSHADLMITQVLSADAEPKRKLKQIVMAATRELRIKRVTKNLKVARVFNTLVEEMRAMGLASVDDSQCTEVMAPVAHKDRSPVLLLMGGGMGAGKSTVLKDILKEAFWAGADSVVIEADAFKESDVIYRALSSRGHVDMIQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHHYRMGAGYKVGDDGVITENYWERIGERQQIQEDGRRRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVRSQLRSHKRFAEAFPTYCSLVDNARLYCTNALEGSPKLIGWKEKEKTLLVDTEEIDCLKRVGGLNENAGSIYELYRQPNPACEAGSIWKDIVLSPSRFSIQQELKYSIQKVEKRSKQHLINNTKS", "length": 526, "header": "tr|F4IDR5-1|F4IDR5_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IDR5-1" }, "locus": { "chromosome": "1", "start_pos": 2073701, "end_pos": 2076505, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G06750.2", "url": "https://www.ensemblgenomes.org/id/AT1G06750.2" }, { "database": "Ensembl Peptide", "id": "AT1G06750.2", "url": "https://www.ensemblgenomes.org/id/AT1G06750.2" } ] } }, { "isoform_ac": "F4IDR6-1", "url": "https://www.uniprot.org/uniprotkb/F4IDR5/entry#F4IDR6-1", "sequence": { "sequence": "MQREYSGNRTSTYSQILVVSSIGLMIAAAVHYRLRRLRDTKIIPRLKSSHKHKGHEKLERFSHYVARQMGFKDRRECPNLCKLAAEYISKSECCEEDIYSFFSEEPDADTLFIKLVEEFERCILSYFAFHWSHADLMITQVLSADAEPKRKLKQIVMAATRELRIKRVTKNLKVARVFNTLVEEMRAMGLASVDDSQCTEVMAPVAHKDRSPVLLLMGGGMGAGKSTVLKDILKEAFWAGADSVVIEADAFKESDVIYRALSSRGHVDMIQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRHHYRMGAGYKVGDDGVITENYWERIGERQQIQEDGRRRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVRSQLRSHKRFAEAFPTYCSLVDNARLYCTNALEGSPKLIGWKEKEKTLLVDTEEIDCLKRVGGLNENAGSIYELYRQPNPACEAGSIWKDIVLSPSRFSIQQELKYSIQKVEKRSKQHLINNTKS", "length": 519, "header": "tr|F4IDR6-1|F4IDR6_ARATH Computationally mapped isoform of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IDR5-1" }, "locus": { "chromosome": "1", "start_pos": 2072979, "end_pos": 2076468, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G06750.1", "url": "https://www.ensemblgenomes.org/id/AT1G06750.1" }, { "database": "Ensembl Peptide", "id": "AT1G06750.1", "url": "https://www.ensemblgenomes.org/id/AT1G06750.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 234, "end_pos": 234, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IDR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IDR6" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr234" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IDR5", "url": "https://www.uniprot.org/uniprotkb/F4IDR5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IDR5", "url": "https://www.uniprot.org/uniprotkb/F4IDR5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G06750", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G06750", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F4IDR5", "url": "https://www.uniprot.org/uniprotkb/F4IDR5" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F4IDR5", "url": "https://www.uniprot.org/uniprotkb/F4IDR5" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F4IDR5", "url": "https://www.uniprot.org/uniprotkb/F4IDR5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IDR5", "url": "https://www.uniprot.org/uniprotkb/F4IDR5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IDR5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 526, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IDR5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IDR5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IDR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDR5" }, { "id": "PF06414", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06414" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zeta toxin", "eco_id": "ECO_0000259", "start_pos": 214, "end_pos": 315, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 234 ], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 }, { "start_pos": 522, "end_pos": 524 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IDS9-1", "uniprot_ac": "F4IDS9", "uniprot_id": "F4IDS9_ARATH", "mass": { "chemical_mass": 40715.0, "monoisotopic_mass": 40715.0 }, "refseq": {}, "gene_names": [ { "name": "F5O11.24", "type": "synonym", "evidence": [ { "id": "F4IDS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDS9" } ] }, { "name": "F5O11_24", "type": "synonym", "evidence": [ { "id": "F4IDS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDS9" } ] } ], "protein_names": [ { "name": "F-box associated ubiquitination effector family protein", "type": "synonym", "evidence": [ { "id": "F4IDS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IDS9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IDS9", "url": "https://www.uniprot.org/uniprotkb/F4IDS9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IDS9", "locus": {} } ], "crossref": [ { "id": "F4IDS9", "url": "https://alphafold.ebi.ac.uk/entry/F4IDS9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G12490", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G12490", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "837806", "url": "https://www.ncbi.nlm.nih.gov/gene/837806", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G12490", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G12490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RWYRPLP", "url": "https://omabrowser.org/oma/group/RWYRPLP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G12490", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G12490", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IDS9", "url": "https://www.uniprot.org/uniprotkb/F4IDS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IDS9-1", "url": "https://www.uniprot.org/uniprotkb/F4IDS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESLPHEVVERILEKTCCGFSAEIHGCIETMEIIDRISILPTKTIDTASAIRSREDYFNPDLKHLTTLVLGSSSSVTIPTPWEKDKEKEKEKEKEDEEFFLVSFDSCDGLVCLYKYWKSGYVVNPTTRWYRPLPLSQLQQLLISLGRSVFELGYTVCDIGFGKDKITGTYKPVWLYNSLEIGLENATTCEVFDFNTNAWRYVSPTAPYREETKILSFDLHTETFRVVSKAPFTNVKAFDIVMCNLGNRLCVSEKNWPNQVIWSFNSGNKTWHKMFSINLDVTSHWFGNHIAAVMPLALFYEKKKKKKLLFYCRVRSRTLMVYDPETESYDVAFNDYSIGYPLCYFQSLISIS", "length": 352, "header": "tr|F4IDS9-1|F4IDS9_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IDS9-1" }, "isoforms": [ { "isoform_ac": "F4IDS9-1", "url": "https://www.uniprot.org/uniprotkb/F4IDS9/entry#F4IDS9-1", "sequence": { "sequence": "MESLPHEVVERILEKTCCGFSAEIHGCIETMEIIDRISILPTKTIDTASAIRSREDYFNPDLKHLTTLVLGSSSSVTIPTPWEKDKEKEKEKEKEDEEFFLVSFDSCDGLVCLYKYWKSGYVVNPTTRWYRPLPLSQLQQLLISLGRSVFELGYTVCDIGFGKDKITGTYKPVWLYNSLEIGLENATTCEVFDFNTNAWRYVSPTAPYREETKILSFDLHTETFRVVSKAPFTNVKAFDIVMCNLGNRLCVSEKNWPNQVIWSFNSGNKTWHKMFSINLDVTSHWFGNHIAAVMPLALFYEKKKKKKLLFYCRVRSRTLMVYDPETESYDVAFNDYSIGYPLCYFQSLISIS", "length": 352, "header": "tr|F4IDS9-1|F4IDS9_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IDS9-1" }, "locus": { "chromosome": "1", "start_pos": 4260783, "end_pos": 4261869, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G12490.1", "url": "https://www.ensemblgenomes.org/id/AT1G12490.1" }, { "database": "Ensembl Peptide", "id": "AT1G12490.1", "url": "https://www.ensemblgenomes.org/id/AT1G12490.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": 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"https://www.ebi.ac.uk/interpro/entry/IPR025398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G19260", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G19260", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CWTVHDH", "url": "https://omabrowser.org/oma/group/CWTVHDH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11697", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11697", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11697:SF230", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11697:SF230", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_173360", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_173360", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G19260", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G19260", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IE28", "url": "https://www.uniprot.org/uniprotkb/F4IE28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IE28-1", "url": "https://www.uniprot.org/uniprotkb/F4IE28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYRFLKRKSPPPPDINLNELPSDPAKRKSILSYHPNQRDEVRREYLIRGPCQPRGHKFKQIAIGKVLRRFNPKWFDLYGDWLEYSVEKEKAFCLYCYLFRDQTGNQGGSDSFLSTGFCSWNKADRLDQHVGLDVNSFHNNAKRKCEDLMRQGQSIKHALHKQTDVVKNDYRIWLNASIDVSRHLLHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKESSSAYYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGASCKRKDKIREIHRQKVEEKISNGEIKTGTGLNQELSLQRPGNTRWGSHYKTLLRLEELFSSIVIVLEYIQDEGTDTTKRQQAYGILKYFHTFDFVFYLELMLLVMGLTDSLSKALQRKDQDILNAISLVKTTKCQLQKVRDDGWDAFMAKVSSFSEKNNTGMLKMEEEFVDSRRPRKKTGITNLHHYKVDCFYTVLDMQLQEFNDRFDEVNSELLICMSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQLEIYLDNVKNDERFTDLKCLGDLARVMVETRKHLSHPLVYRLLKVSLILPVATATVERCFSAMNFVKTTLRNRIGDMFLSDCLVCFIEKQALNTVTNESVIKRFQDMSERRVHL", "length": 769, "header": "tr|F4IE28-1|F4IE28_ARATH Isoform 1 of TTF-type zinc finger protein with HAT dimerization domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=LOH3 PE=4 SV=1 CANONICAL=F4IE28-1" }, "isoforms": [ { "isoform_ac": "F4IE28-1", "url": "https://www.uniprot.org/uniprotkb/F4IE28/entry#F4IE28-1", "sequence": { "sequence": "MYRFLKRKSPPPPDINLNELPSDPAKRKSILSYHPNQRDEVRREYLIRGPCQPRGHKFKQIAIGKVLRRFNPKWFDLYGDWLEYSVEKEKAFCLYCYLFRDQTGNQGGSDSFLSTGFCSWNKADRLDQHVGLDVNSFHNNAKRKCEDLMRQGQSIKHALHKQTDVVKNDYRIWLNASIDVSRHLLHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKESSSAYYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGASCKRKDKIREIHRQKVEEKISNGEIKTGTGLNQELSLQRPGNTRWGSHYKTLLRLEELFSSIVIVLEYIQDEGTDTTKRQQAYGILKYFHTFDFVFYLELMLLVMGLTDSLSKALQRKDQDILNAISLVKTTKCQLQKVRDDGWDAFMAKVSSFSEKNNTGMLKMEEEFVDSRRPRKKTGITNLHHYKVDCFYTVLDMQLQEFNDRFDEVNSELLICMSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQLEIYLDNVKNDERFTDLKCLGDLARVMVETRKHLSHPLVYRLLKVSLILPVATATVERCFSAMNFVKTTLRNRIGDMFLSDCLVCFIEKQALNTVTNESVIKRFQDMSERRVHL", "length": 769, "header": "tr|F4IE28-1|F4IE28_ARATH Isoform 1 of TTF-type zinc finger protein with HAT dimerization domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=LOH3 PE=4 SV=1 CANONICAL=F4IE28-1" }, "locus": { "chromosome": "1", "start_pos": 6657260, "end_pos": 6659569, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G19260.1", "url": "https://www.ensemblgenomes.org/id/AT1G19260.1" }, { "database": "Ensembl Peptide", "id": "AT1G19260.1", "url": "https://www.ensemblgenomes.org/id/AT1G19260.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IE28", "url": "https://www.uniprot.org/uniprotkb/F4IE28" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IE28", "url": "https://www.uniprot.org/uniprotkb/F4IE28" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G19260", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G19260", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5SVZ6-1", "protein_name": "Zinc finger MYM-type protein 1", "gene_name": "ZMYM1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKEPLLGGECDKAVASQLGLLDEIKTEPDNAQEYCHRQQSRTQENELKINAVFSESASQLTAGIQLSLASSGVNKMLPSVSTTAIQVSCAGCKKILQKGQTAYQRKGSAQLFCSIPCITEYISSASSPVPSKRTCSNCSKDILNPKDVISVQLEDTTSCKTFCSLSCLSSYEEKRKPFVTICTNSILTKCSMCQKTAIIQYEVKYQNVKHNLCSNACLSKFHSANNFIMNCCENCGTYCYTSSSLSHILQMEGQSHYFNSSKSITAYKQKPAKPLISVPCKPLKPSDEMIETTSDLGKTELFCSINCFSAYSKAKMESSSVSVVSVVHDTSTELLSPKKDTTPVISNIVSLADTDVALPIMNTDVLQDTVSSVTATADVIVDLSKSSPSEPSNAVASSSTEQPSVSPSSSVFSQHAIGSSTEVQKDNMKSMKISDELCHPKCTSKVQKVKGKSRSIKKSCCADFECLENSKKDVAFCYSCQLFCQKYFSCGRESFATHGTSNWKKTLEKFRKHEKSEMHLKSLEFWREYQFCDGAVSDDLSIHSKQIEGNKKYLKLIIENILFLGKQCLPLRGNDQSVSSVNKGNFLELLEMRAKDKGEETFRLMNSQVDFYNSTQIQSDIIEIIKTEMLQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGFVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRALYIHCYAHFLDLSIIRFCKEVKELRSALKTLSSLFNTICMSGEMLANFRNIYRLSQNKTCKKHISQSCWTVHDRTLLSVIDSLPEIIETLEVIASHSSNTSFADELSHLLTLVSKFEFVFCLKFLYRVLSVTGILSKELQNKTIDIFSLSSKIEAILECLSSERNDVYFKTIWDGTEEICQKITCKGFKVEKPSLQKRRKIQKSVDLGNSDNMFFPTSTEEQYKINIYYQGLDTILQNLKLCFSEFDYCKIKQISELLFKWNEPLNETTAKHVQEFYKLDEDIIPELRFYRHYAKLNFVIDDSCINFVSLGCLFIQHGLHSNIPCLSKLLYIALSWPITSASTENSFSTLPRLKTYLCNTMGQEKLTGPALMAVEQELVNKLMEPERLNEIVEKFISQMKEI", "length": 1142 }, "evidence": [ { "id": "F4IE28", "url": "https://omabrowser.org/oma/group/F4IE28/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IE28", "url": "https://www.uniprot.org/uniprotkb/F4IE28" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "F4IE28", "url": "https://www.uniprot.org/uniprotkb/F4IE28" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F4IE28", "url": "https://www.uniprot.org/uniprotkb/F4IE28" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 556, "end_pos": 558, "annotation": "n_glycosylation_sequon" }, { "start_pos": 752, "end_pos": 754, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IE28-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 769, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IE28-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IE28" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IE28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE28" }, { "id": "SM00597", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00597" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TTF-type", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 161, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 175, "end_pos": 177 }, { "start_pos": 556, "end_pos": 558 }, { "start_pos": 752, "end_pos": 754 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IE40-1", "uniprot_ac": "F4IE40", "uniprot_id": "F4IE40_ARATH", "mass": { "chemical_mass": 113469.0, "monoisotopic_mass": 113469.0 }, "refseq": {}, "gene_names": [ { "name": "F28B23.15", "type": "synonym", "evidence": [ { "id": "F4IE40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ] }, { "name": "F28B23_15", "type": "synonym", "evidence": [ { "id": "F4IE40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ] } ], "protein_names": [ { "name": "ARM repeat superfamily protein", "type": "synonym", "evidence": [ { "id": "F4IE40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE40/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IE40", "locus": {} } ], "crossref": [ { "id": "F4IE40", "url": "https://alphafold.ebi.ac.uk/entry/F4IE40", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G26170", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G26170", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839158", "url": "https://www.ncbi.nlm.nih.gov/gene/839158", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058669", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058669", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G26170", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26170", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NPDQYTI", "url": "https://omabrowser.org/oma/group/NPDQYTI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10997", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10997:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT1G26170", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G26170", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IE40-1", "url": "https://www.uniprot.org/uniprotkb/F4IE40-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVDQDQQWLLGCLSASLDPNQNVRSFAETSLNQASLQPGFGSALCRVAANKDLSLGLRQLAAVLLKQFIKKHWRENEEAFEYPLVSSEEKALIRGQLLGSLDDSHRKICTAISMDISSIATYDWPEEWPELVPFLLKLISDPSNTNGVHGALRCLALLSGELDDKEVPTLVPVLFPCLHAVVSSPQSYDKYIRGKALTIVYSCIYVLGAMSGVYKTETTTLVTPVLKVWMNQFSLILEHPVQREDPDDWSLRMEVLKCLNQFVQNFPSLIESELMAIMRPLWHTFESSLQVYLRSSIDGAEDSYDGRYDSDGEEKSLDTFVIQLFEFLSTIVSSRRLSKTIAGNVRELVYQTVAFLQITEQQVHTWSMDVNQFVADEDEGSYSCRISGILLLEEVINTFGSEGINAVVDAAGKRFQESQRENSASSLSWWRLREAVLFTLASLSDQLVEAEDLRIDPANLAKFIEQLIMEDTGIGYHECPFLYARIFTAVAKFSSVINAGILEHFLNAAVRAITMDVPPPVKVGACRALLQLLPDMNSSVILPQIMNLFSSLTDLLRQATDETLVLVLETLQQAIKAGHEASASIESIISPVILNVWVAHISDPFMSIDVIDVLEAIKNSPGCLHPLTSRILPFIGPILNKPHQQPEGLASGSLDLLTMLLKGAPSDIVKTAYDFCFAAVIRIVLHSEDHGELQNATECLAAFISSGRQELLTWSGDPGFTMRSLLDATSRLLNPDLEGSGSLFAGKYILQLILHLPSEMAPHVQDLVAALVRRLQSAEILALKGSLLLIFARLVHMSYPNVDQFINLLVSIPADGHENSFTYVMTEWTKQQGEIQSAYQIKVTTSALALLLSTRHSEFAKVNVPGSPIQSNGGITTRSKARSAPEQWTIIPLPMKILALLADTLIEIQEQVLSNEDEDSEWEEVHEGDAKAEKDLLRSAGTSQFSKPTYDQLEAMARFENQDDEVDDHLLGTDPLNEINLASYVADFLLKFSSEDRPLFDNLCQGLTNAQRNVIHMALNR", "length": 1022, "header": "tr|F4IE40-1|F4IE40_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IE40-1" }, "isoforms": [ { "isoform_ac": "F4IE40-1", "url": "https://www.uniprot.org/uniprotkb/F4IE40/entry#F4IE40-1", "sequence": { "sequence": "MVVDQDQQWLLGCLSASLDPNQNVRSFAETSLNQASLQPGFGSALCRVAANKDLSLGLRQLAAVLLKQFIKKHWRENEEAFEYPLVSSEEKALIRGQLLGSLDDSHRKICTAISMDISSIATYDWPEEWPELVPFLLKLISDPSNTNGVHGALRCLALLSGELDDKEVPTLVPVLFPCLHAVVSSPQSYDKYIRGKALTIVYSCIYVLGAMSGVYKTETTTLVTPVLKVWMNQFSLILEHPVQREDPDDWSLRMEVLKCLNQFVQNFPSLIESELMAIMRPLWHTFESSLQVYLRSSIDGAEDSYDGRYDSDGEEKSLDTFVIQLFEFLSTIVSSRRLSKTIAGNVRELVYQTVAFLQITEQQVHTWSMDVNQFVADEDEGSYSCRISGILLLEEVINTFGSEGINAVVDAAGKRFQESQRENSASSLSWWRLREAVLFTLASLSDQLVEAEDLRIDPANLAKFIEQLIMEDTGIGYHECPFLYARIFTAVAKFSSVINAGILEHFLNAAVRAITMDVPPPVKVGACRALLQLLPDMNSSVILPQIMNLFSSLTDLLRQATDETLVLVLETLQQAIKAGHEASASIESIISPVILNVWVAHISDPFMSIDVIDVLEAIKNSPGCLHPLTSRILPFIGPILNKPHQQPEGLASGSLDLLTMLLKGAPSDIVKTAYDFCFAAVIRIVLHSEDHGELQNATECLAAFISSGRQELLTWSGDPGFTMRSLLDATSRLLNPDLEGSGSLFAGKYILQLILHLPSEMAPHVQDLVAALVRRLQSAEILALKGSLLLIFARLVHMSYPNVDQFINLLVSIPADGHENSFTYVMTEWTKQQGEIQSAYQIKVTTSALALLLSTRHSEFAKVNVPGSPIQSNGGITTRSKARSAPEQWTIIPLPMKILALLADTLIEIQEQVLSNEDEDSEWEEVHEGDAKAEKDLLRSAGTSQFSKPTYDQLEAMARFENQDDEVDDHLLGTDPLNEINLASYVADFLLKFSSEDRPLFDNLCQGLTNAQRNVIHMALNR", "length": 1022, "header": "tr|F4IE40-1|F4IE40_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IE40-1" }, "locus": { "chromosome": "1", "start_pos": 9047292, "end_pos": 9054703, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G26170.1", "url": "https://www.ensemblgenomes.org/id/AT1G26170.1" }, { "database": "Ensembl Peptide", "id": "AT1G26170.1", "url": "https://www.ensemblgenomes.org/id/AT1G26170.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 219, "end_pos": 219, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr219" }, { "start_pos": 220, "end_pos": 220, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr220" }, { "start_pos": 221, "end_pos": 221, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr221" }, { "start_pos": 309, "end_pos": 309, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr309" }, { "start_pos": 311, "end_pos": 311, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser311" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman C L, Brooks S Y, Buehler E, Chan A, Chao Q, Chen H, Cheuk R F, Chin C W, Chung M K, Conn L, Conway A B, Conway A R, Creasy T H, Dewar K, Dunn P, Etgu P, Feldblyum T V, Feng J, Fong B, Fujii C Y, Gill J E, Goldsmith A D, Haas B, Hansen N F, Hughes B, Huizar L, Hunter J L, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim C J, Koo H L, Kremenetskaia I, Kurtz D B, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee J M, Lenz C A, Li J H, Li Y, Lin X, Liu S X, Liu Z A, Luros J S, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "F4IE40", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G26170", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26170", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A857-1", "protein_name": "Importin 9", "gene_name": "Ipo9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAAAAGAASGLPGPVAQGLKEALVDTLTGILSPVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGALAIRQLASVILKQYVETHWCAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAWPQLFNLLMEMLVSGDLNAVHGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQMPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAVALATAATRHLQEAEQTKASGTEHWWKIHEACMLALGSVKSIITDSVKNGRIHFDMHGFLTNVILADLNLSASPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSILDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASVESKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNVMEANAARQATPAEWNQDDSNDMWEDQEEEEEEEEDGLAGQLLSDILATSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYIMFSCHLNDTERRVLQTIGI", "length": 1041 }, "evidence": [ { "id": "F4IE40", "url": "https://omabrowser.org/oma/group/F4IE40/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NRZ6-1", "protein_name": "Importin 9", "gene_name": "IPO9", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGAAAAGGPGGGGPGPVAQGLKEALVETLTGILCPVQAVRAAAEEQVKVLEVTEEFGVHLAELTVDPQGALAIRQLASVILKQYVETHWCSQSEKFRPPETTERAKVAIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAWPELFNLLMEMLVSGDVNVVHGAMRVLTEFTREVTDTQMPHVAPVILPEMYKIFTMAEVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQMPDGPTSDSGFKMEVLKAVTALVKNYPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENNKFKSTVKKALPELIYYILLYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVAADFQNESASALAAAATRHLQEAEQAKNSGAEHWWKIHEACMLALGSVKSIITDSVKNGRIHFDMHGFLTNVVLADLNLSVSPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKISESTHVLQPFLPSILDGLIHLATQFSSEVLNLVMETLCIVCTVDPAFTASVENKICPFTIAIFLKYSNDPVVASLAQDIFKELAQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATSIDILTTVVRNTKPPLSQLLICQAFPAVAQCSLNTDDNATMQNGGECLRAYVSVALEQIAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGSELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHSQLEPLLEFLCSLPGPTGKPALEFVMAEWMSRQHLFYGQYEGKVSSVALCKLLQYGINTDDKRLQDIRVKGEEIFNMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNAMEANASRQTTTDWSQDDSNDMWEDQEEDEDEDEGLAGQFLSDILSTNKYDEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYAMFSDHLNENEKRVLQAIGI", "length": 1040 }, "evidence": [ { "id": "F4IE40", "url": "https://omabrowser.org/oma/group/F4IE40/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P53067-1", "protein_name": "Importin subunit beta-5", "gene_name": "KAP114", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLSLRKLITMYWSPGFESYRSTSNVEIDVKDFIREVLLKLCLNDNENTKIKNGASYCIVQISAVDFPDQWPQLLTVIYDAISHQHSLNAMSLLNEIYDDVVSEEMFFEGGIGLATMEIVFKVLNTETSTLIAKIAALKLLKACLLQMSSHNEYDEASRKSFVSQCLATSLQILGQLLTLNFGNVDVISQLKFKSIIYENLVFIKNDFSRKHFSSELQKQFKIMAIQDLENVTHINANVETTESEPLLETVHDCSIYIVEFLTSVCTLQFSVEEMNKIITSLTILCQLSSETREIWTSDFNTFVSKETGLAASYNVRDQANEFFTSLPNPQLSLIFKVVSNDIEHSTCNYSTLESLLYLLQCILLNDDEITGENIDQSLQILIKTLENILVSQEIPELILARAILTIPRVLDKFIDALPDIKPLTSAFLAKSLNLALKSDKELIKSATLIAFTYYCYFAELDSVLGPEVCSETQEKVIRIINQVSSDAEEDTNGALMEVLSQVISYNPKEPHSRKEILQAEFHLVFTISSEDPANVQVVVQSQECLEKLLDNINMDNYKNYIELCLPSFINVLDSNNANNYRYSPLLSLVLEFITVFLKKKPNDGFLPDEINQYLFEPLAKVLAFSTEDETLQLATEAFSYLIFNTDTRAMEPRLMDIMKVLERLLSLEVSDSAAMNVGPLVVAIFTRFSKEIQPLIGRILEAVVVRLIKTQNISTEQNLLSVLCFLTCNDPKQTVDFLSSFQIDNTDALTLVMRKWIEAFEVIRGEKRIKENIVALSNLFFLNDKRLQKVVVNGNLIPYEGDLIITRSMAKKMPDRYVQVPLYTKIIKLFVSELSFQSKQPNPEQLITSDIKQEVVNANKDDDNDDWEDVDDVLDYDKLKEYIDDDVDEEADDDSDDITGLMDVKESVVQLLVRFFKEVASKDVSGFHCIYETLSDSERKVLSEALL", "length": 1004 }, "evidence": [ { "id": "F4IE40", "url": "https://omabrowser.org/oma/group/F4IE40/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54WY2-1", "protein_name": "Importin 9", "gene_name": "cnrP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTITIENVIELINGLNDPKLNKHYENKLEEITNEIGFGVVLAKLASDKQFDMVHRQFSGILLKKYISKHWNEFNDSQSDEEGDDNLNEHEKIQLQQMKLQQQQQQQPKEYRVLTKEEKTEIKKLLSPCLSDPSSKIRTAIAMCIAKIGAYEWPHDWPELVDELIGCLNRVNNNDTNNNNNNDLLHGVIRCLELLCDPQDGNISEEQIEILIKQVYPVFSELLGKDIDPMIHIRIINVFRSTVTHLTYMKGVTKGLSKALFPFISTWVPIFTGHLSRVLDLGSPHINHYFTIMSAMVEIFTMLIQDFPKKTSKYIQEILPPIWTLFNNCYPIYEKVEINPVHGIVSNFVEEGITKIDRLVSSIFDFMQQIVSNQTLAPLFKPFLKPIFANSIQYMQMNYELVELWDSDPNLFLENEDDTTYTPRVVSTSLVQSMCETYKSEGSKYLFEVISETLIKAQEEKNKNSKNTNSWWKIREAALVALCDSSQQLSKIKQFDAVSFLSTNLIQDFQGTLNENDQGSLILRGRSLICASKFAKLVDPSISLPFFNQAVVLITQNIPVTLKLTAVMAIGSFAPKISAQSIVDYIPSTVQALISMINQLSEDSLLLVLDCIKMLVKIDKDITGKLEPLLIPHLSQAWINYGNDPMFSDALKEIFQIICACPKSYPGILQRMIPTLNIILSDYTNPMYNPIADSAADVLSLLIANVDQQIDSFLLDQLFSPILNILLTCDCQANRGILKASLCTLLPFVYKTSSDLLLKWTFTSASNTQSATPPTPTPTTTTINGLHGLFLVLRRVLFETDELVHVEVPSIISALLVKHSEIIGAQTVPLFESTLQAFYNCKLPSTKRAFSSVFARLIIQHKTTIIDYLAAIPGPNGNGSALVFVLNEWQKYHLEMTSKLENNVSVVAMCTLVSLNDPRLESINIDGRQIIPDRSTRDIRRKKSQYNGGLNEEWTKVNLFNKIMENLLETVKLEKEELAKNSNGTANSTPQDHHDSDEDYDDDEDEDDEDDEETTSKRYPNVDENGFAPAEEYAHMIDYAGDDDNDDLAQYLQDEFTEDAFEIISKSDPIYHIELLKYLSDFFTNLSKNSPSIFTIVAPLLNEFKLQSFGN", "length": 1110 }, "evidence": [ { "id": "F4IE40", "url": "https://omabrowser.org/oma/group/F4IE40/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q91YE6-1", "protein_name": "Importin-9", "gene_name": "Ipo9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAAAGAASGLPGPVAQGLKEALVDTLTGILSPVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGALAIRQLASVILKQYVETHWCAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAWPQLFNLLMEMLVSGDLNAVHGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQMPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAVALATAATRHLQEAEQTKASGTEHWWKIHEACMLALGSVKSIITDSVKNGRIHFDMHGFLTNVILADLNLSASPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSILDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASVENKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNVMEANAARQATPAEWNQDDSNDMWEDQEEEEEEEEDGLAGQLLSDILATSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYIMFSCHLNDNERRVLQTIGI", "length": 1041 }, "evidence": [ { "id": "F4IE40", "url": "https://omabrowser.org/oma/group/F4IE40/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96P70-1", "protein_name": "Importin-9", "gene_name": "IPO9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAAAGAASGLPGPVAQGLKEALVDTLTGILSPVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGALAIRQLASVILKQYVETHWCAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAWPQLFNLLMEMLVSGDLNAVHGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQIPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAAALAAAATRHLQEAEQTKNSGTEHWWKIHEACMLALGSVKAIITDSVKNGRIHFDMHGFLTNVILADLNLSVSPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSILDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASMESKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNVMEANAARQATPAEWSQDDSNDMWEDQEEEEEEEEDGLAGQLLSDILATSKYEEDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYIMFSGHLNDNERRVLQTIGI", "length": 1041 }, "evidence": [ { "id": "F4IE40", "url": "https://omabrowser.org/oma/group/F4IE40/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ], "pmid": "" }, { "name": "nuclear import signal receptor activity", "id": "GO:0061608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061608", "evidence": [ { "database": "UniProtKB", "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "F4IE40", "url": "https://www.uniprot.org/uniprotkb/F4IE40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 538, "end_pos": 540, "annotation": "n_glycosylation_sequon" }, { "start_pos": 696, "end_pos": 698, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IE40-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1022, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IE40-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IE40" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IE40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE40" }, { "id": "PS50166", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50166" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Importin N-terminal", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 104, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 219, 220, 221, 309, 311 ], "sequon_annotation_sites": [ { "start_pos": 538, "end_pos": 540 }, { "start_pos": 696, "end_pos": 698 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IE60-1", "uniprot_ac": "F4IE60", "uniprot_id": "F4IE60_ARATH", "mass": { "chemical_mass": 131744.0, "monoisotopic_mass": 131744.0 }, "refseq": {}, "gene_names": [ { "name": "F28B23.2", "type": "synonym", "evidence": [ { "id": "F4IE60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE60" } ] }, { "name": "F28B23_2", "type": "synonym", "evidence": [ { "id": "F4IE60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE60" } ] } ], "protein_names": [ { "name": "DNA binding protein", "type": "synonym", "evidence": [ { "id": "F4IE60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IE60/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IE60", "url": "https://www.uniprot.org/uniprotkb/F4IE60" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IE60", "locus": {} } ], "crossref": [ { "id": "F4IE60", "url": "https://alphafold.ebi.ac.uk/entry/F4IE60", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT1G26330", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT1G26330", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "839175", "url": "https://www.ncbi.nlm.nih.gov/gene/839175", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003888", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003888", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040092", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040092", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G26330", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G26330", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AKSMMTF", "url": "https://omabrowser.org/oma/group/AKSMMTF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22715", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22715", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22715:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22715:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT1G26330", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G26330", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IE60", "url": "https://www.uniprot.org/uniprotkb/F4IE60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IE60-1", "url": "https://www.uniprot.org/uniprotkb/F4IE60-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IE61", "url": "https://www.uniprot.org/uniprotkb/F4IE61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IE61-1", "url": "https://www.uniprot.org/uniprotkb/F4IE61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPRVVSEDRKSVDIEIVSVGALYTGSWDKKYWSSSRVVNNTRSIETTYAYGYKAVRAHSGNTYYMEIEEGAKGPLFLIRYLDESWTGQTPDIAWGKLQKTDFSHLKIWHGKRFTCKMGGMEFFGFKNPLVQRLLRELVTNSHGMVESSPSSRASHIRVNDERPVMCANPNLLCYLDMPVARKKRSRKPGITYQNSVAKSVHKKPRFQDSLTGGEILNSAPVSICSGKGEVETVGQQVALPEQFHSNHATNEYSSLPSEKPPQMKIFIPIQETNRLPDSCKSKPLSKFSEEFHGLQEKENKPNDDNFLHESPNMTASSFCAPDTLDFLQDNTASSAPKINDDTSCMKKEELTHANMVVGEGILAEPNAEDLADSTLNLTSKKSDSDLVDQETAKTMMSLLLPQAIPLLKKTSSKKPPRNDMSDNCKTSQLNDASGTAVSLAIRESSGDDENMQVVAPDSDQDFASNVSIAPDSFDESHLVGPGSGHIISSSQEVYPAVLPKMPIDEDHVPIVNDLSVSALEENNQEEYMKRFMSIPHCTSSVNMILSQESKERCAAEGNLLQKEHHSENKEPKSTFCSTEGNGFPVDTTPTEACSVKKENHKVYIRKRVSTNQHRINRNLSSESKNSCRNTGEDDSIRNMSPINSSRILELQPTLSTNSVSDRTNPLGNESGHVTEQYQGPELVKVNNNTFTNVKSNEACVVPQDTRSAHAFGSASISSSSFPASKFEDCQANIGEELGIQVSEPPSTESQYKENTSEKCTSVQEFPASSNLKLNRDVKINNEMEKTVELLGCYFHPMPVSSVLLRTVGNEIYILVLSFATEDRVRTLFMYKMSAEAPSKGFPSIIGHTPAILPIVDDKSSGNGTLEISNLHFTPDGLHLILTGNIKTPYCRKRETDCSCLICTSACFEENAVRIVQVKTGHVSLVTKLQADDSVQCVVVCDPNNLIAAVKSGNLIVWAMNSHWSGPTEEYVILANPCISSCIMELKKIPKCPHLVIGHNGIGEFTIWDISKRSLVSRFVSPSNLIFEFIPTSLFAWHPVHSHSTIEDNVDMILAATKLWFSKGVNNKTLVPAEVKDTAIWLLVSTDLDSDAKCDRVESPVRCWRLALLVKDQLILGSQLDPRADVAGTISGHGVAGTLDGLVYMWDLSTGTKLGSLHDFKGQRVSCISTDDSRNICIASEDGQLLVYCHPEK", "length": 1194, "header": "tr|F4IE60-1|F4IE60_ARATH Isoform 1 of DNA binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IE60-1" }, "isoforms": [ { "isoform_ac": "F4IE60-1", "url": "https://www.uniprot.org/uniprotkb/F4IE60/entry#F4IE60-1", "sequence": { "sequence": "MASPRVVSEDRKSVDIEIVSVGALYTGSWDKKYWSSSRVVNNTRSIETTYAYGYKAVRAHSGNTYYMEIEEGAKGPLFLIRYLDESWTGQTPDIAWGKLQKTDFSHLKIWHGKRFTCKMGGMEFFGFKNPLVQRLLRELVTNSHGMVESSPSSRASHIRVNDERPVMCANPNLLCYLDMPVARKKRSRKPGITYQNSVAKSVHKKPRFQDSLTGGEILNSAPVSICSGKGEVETVGQQVALPEQFHSNHATNEYSSLPSEKPPQMKIFIPIQETNRLPDSCKSKPLSKFSEEFHGLQEKENKPNDDNFLHESPNMTASSFCAPDTLDFLQDNTASSAPKINDDTSCMKKEELTHANMVVGEGILAEPNAEDLADSTLNLTSKKSDSDLVDQETAKTMMSLLLPQAIPLLKKTSSKKPPRNDMSDNCKTSQLNDASGTAVSLAIRESSGDDENMQVVAPDSDQDFASNVSIAPDSFDESHLVGPGSGHIISSSQEVYPAVLPKMPIDEDHVPIVNDLSVSALEENNQEEYMKRFMSIPHCTSSVNMILSQESKERCAAEGNLLQKEHHSENKEPKSTFCSTEGNGFPVDTTPTEACSVKKENHKVYIRKRVSTNQHRINRNLSSESKNSCRNTGEDDSIRNMSPINSSRILELQPTLSTNSVSDRTNPLGNESGHVTEQYQGPELVKVNNNTFTNVKSNEACVVPQDTRSAHAFGSASISSSSFPASKFEDCQANIGEELGIQVSEPPSTESQYKENTSEKCTSVQEFPASSNLKLNRDVKINNEMEKTVELLGCYFHPMPVSSVLLRTVGNEIYILVLSFATEDRVRTLFMYKMSAEAPSKGFPSIIGHTPAILPIVDDKSSGNGTLEISNLHFTPDGLHLILTGNIKTPYCRKRETDCSCLICTSACFEENAVRIVQVKTGHVSLVTKLQADDSVQCVVVCDPNNLIAAVKSGNLIVWAMNSHWSGPTEEYVILANPCISSCIMELKKIPKCPHLVIGHNGIGEFTIWDISKRSLVSRFVSPSNLIFEFIPTSLFAWHPVHSHSTIEDNVDMILAATKLWFSKGVNNKTLVPAEVKDTAIWLLVSTDLDSDAKCDRVESPVRCWRLALLVKDQLILGSQLDPRADVAGTISGHGVAGTLDGLVYMWDLSTGTKLGSLHDFKGQRVSCISTDDSRNICIASEDGQLLVYCHPEK", "length": 1194, "header": "tr|F4IE60-1|F4IE60_ARATH Isoform 1 of DNA binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IE60-1" }, "locus": { "chromosome": "1", "start_pos": 9107519, "end_pos": 9113725, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G26330.2", "url": "https://www.ensemblgenomes.org/id/AT1G26330.2" }, { "database": "Ensembl Peptide", "id": "AT1G26330.2", "url": "https://www.ensemblgenomes.org/id/AT1G26330.2" } ] } }, { "isoform_ac": "F4IE61-1", "url": "https://www.uniprot.org/uniprotkb/F4IE60/entry#F4IE61-1", "sequence": { "sequence": 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"MVIRRIKRFLGLKPGNQRRKQVIRVLTMTEEGEINVLSIKEEGEINVLSTKEEGGAKMEAKYKTKKLWDEIVGVRLYDLLPSVNGEDDIQPNPIRWEKHRDVINNTRLAKRNRETDLGQGEVDSFKLHNSIKFSCGSKMRRRRYNVSTCGGASLAIDDVRDAVRQVSVFQGVVPLGYEQRLGQKPRQEIREELKMQQKGKEENKSRRRQAMAPPVLESIVERGFSILEPESVFYQKKVLAIKGNGAYTFVADSTLGSVQVLKIVGEKLMKTSWNFTVNPSDVSKSGVWRNLTTPEGSEDIVYAAATELYAM", "length": 311, "header": "tr|F4IEH1-1|F4IEH1_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IEH1-1" }, "locus": { "chromosome": "1", "start_pos": 16887217, "end_pos": 16889155, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G44740.1", "url": "https://www.ensemblgenomes.org/id/AT1G44740.1" }, { "database": "Ensembl Peptide", "id": "AT1G44740.1", "url": "https://www.ensemblgenomes.org/id/AT1G44740.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.", 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"evidence": [ { "database": "UniProtKB", "id": "F4IEH1", "url": "https://www.uniprot.org/uniprotkb/F4IEH1" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IEH1", "url": "https://www.uniprot.org/uniprotkb/F4IEH1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT1G44740", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G44740", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4IEH1", "url": "https://www.uniprot.org/uniprotkb/F4IEH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IEH1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IEH1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IEH1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 145, "end_pos": 147 }, { "start_pos": 203, "end_pos": 205 }, { "start_pos": 274, "end_pos": 276 }, { "start_pos": 290, "end_pos": 292 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IEK5-1", "uniprot_ac": "F4IEK5", "uniprot_id": "F4IEK5_ARATH", "mass": { "chemical_mass": 70294.0, "monoisotopic_mass": 70294.0 }, "refseq": { "ac": "NP_175684", "name": "alpha/beta-Hydrolases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175684" }, "gene_names": [ { "name": "F14G24.2", "type": "synonym", "evidence": [ { "id": "NP_175684", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175684" }, { "id": "F4IEK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IEK5" } ] }, { "name": "F14G24_2", "type": "synonym", "evidence": [ { "id": "NP_175684", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175684" }, { "id": "F4IEK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IEK5" } ] } ], "protein_names": [ { "name": "Alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "F4IEK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IEK5/entry#names_and_taxonomy" } ] }, { "name": "alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_175684", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175684" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IEK5", "url": "https://www.uniprot.org/uniprotkb/F4IEK5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IEK5", "locus": {} } ], "crossref": [ { "id": "F4IEK5", "url": "https://alphafold.ebi.ac.uk/entry/F4IEK5", "database": "AlphaFoldDB", "categories": [] }, { "id": "841708", "url": "https://www.ncbi.nlm.nih.gov/gene/841708", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000639", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000639", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT1G52750", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT1G52750", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HEECPTT", "url": "https://omabrowser.org/oma/group/HEECPTT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4IEK5", "url": "https://www.orthodb.org/?gene=F4IEK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43689", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43689", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43689:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43689:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_175684", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_175684", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT1G52750", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT1G52750", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IEK5", "url": "https://www.uniprot.org/uniprotkb/F4IEK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IEK5-1", "url": "https://www.uniprot.org/uniprotkb/F4IEK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAWKSWIVAEKARRCLRTMFFVAAMTASLLASSLPVLITVADVVVPCLIVSSITCLTCHSPAQHFRQYSFKTSLIDVPLVSLIRSLVIICLSWLCEDTRLAYGLYLETVMLSSFGGILLLLVKTCVFTVNSTLEEAKVYHLKISWGMPVLLLSSAVFGLAHVVVAYRKSCGARRKLMYHKIDQEAVLSCKSGFSGYKKAHRQSFTRSNCKILTFAGEFRQKSFRGTSLDREELLQPRLLANADSLFIKIQGLYVHYKQRTSPSVSSFVIISDSAAEMNARRSRLLDKQMSNLTSQTQNSHFHRSYTIQPDRSSLYDPLLASHNTTPISLFDKDGVNQINSIKLGDDMEKDENTGIVLVHGFGGGVFSWRHVMGELSLQLGCRVVAYDRPGWGLTSRLIRKDWEKRNLANPYKLESQVDLLLSFCSEMGFSSVILVGHDDGGLLALKAAERMQASTSKHNITIKGVVLINVSLSREVVPAFARILLHTSLRKKHLVRPLLRTEITQLVNRRAWCDTTKLTTDITMLYKAPLCLEAWDEALNEISKLSYEMILSPQNASALVKSIGDLPVLVVAGAEDALVPLKSSQVLASKLTNSRLVEISGCGHLPHEECPTTLVSALGSFICRLIPKLPNS", "length": 633, "header": "tr|F4IEK5-1|F4IEK5_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IEK5-1" }, "isoforms": [ { "isoform_ac": "F4IEK5-1", "url": "https://www.uniprot.org/uniprotkb/F4IEK5/entry#F4IEK5-1", "sequence": { "sequence": "MAAWKSWIVAEKARRCLRTMFFVAAMTASLLASSLPVLITVADVVVPCLIVSSITCLTCHSPAQHFRQYSFKTSLIDVPLVSLIRSLVIICLSWLCEDTRLAYGLYLETVMLSSFGGILLLLVKTCVFTVNSTLEEAKVYHLKISWGMPVLLLSSAVFGLAHVVVAYRKSCGARRKLMYHKIDQEAVLSCKSGFSGYKKAHRQSFTRSNCKILTFAGEFRQKSFRGTSLDREELLQPRLLANADSLFIKIQGLYVHYKQRTSPSVSSFVIISDSAAEMNARRSRLLDKQMSNLTSQTQNSHFHRSYTIQPDRSSLYDPLLASHNTTPISLFDKDGVNQINSIKLGDDMEKDENTGIVLVHGFGGGVFSWRHVMGELSLQLGCRVVAYDRPGWGLTSRLIRKDWEKRNLANPYKLESQVDLLLSFCSEMGFSSVILVGHDDGGLLALKAAERMQASTSKHNITIKGVVLINVSLSREVVPAFARILLHTSLRKKHLVRPLLRTEITQLVNRRAWCDTTKLTTDITMLYKAPLCLEAWDEALNEISKLSYEMILSPQNASALVKSIGDLPVLVVAGAEDALVPLKSSQVLASKLTNSRLVEISGCGHLPHEECPTTLVSALGSFICRLIPKLPNS", "length": 633, "header": "tr|F4IEK5-1|F4IEK5_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IEK5-1" }, "locus": { "chromosome": "1", "start_pos": 19646465, "end_pos": 19649340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT1G52750.1", "url": 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Militscher J, Miranda M, Nguyen M, Nierman W C, Osborne B I, Pai G, Peterson J, Pham P K, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg S L, Schwartz J R, Shinn P, Southwick A M, Sun H, Tallon L J, Tambunga G, Toriumi M J, Town C D, Utterback T, Van Aken S, Vaysberg M, Vysotskaia V S, Walker M, Wu D, Yu G, Fraser C M, Venter J C, Davis R W", "evidence": [ { "database": "UniProtKB", "id": "F4IEK5", "url": "https://www.uniprot.org/uniprotkb/F4IEK5" } ], "reference": [ { "type": "PubMed", "id": "11130712", "url": "https://glygen.org/publication/PubMed/11130712" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IEK5", "url": "https://www.uniprot.org/uniprotkb/F4IEK5" } ], "reference": [ { "type": "PubMed", "id": "27862469", 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"kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IF29-1", "uniprot_ac": "F4IF29", "uniprot_id": "F4IF29_ARATH", "mass": { "chemical_mass": 38072.0, "monoisotopic_mass": 38072.0 }, "refseq": {}, "gene_names": [ { "name": "F3N23.29", "type": "synonym", "evidence": [ { "id": "F4IF29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IF29" } 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IFE3-1", "uniprot_ac": "F4IFE3", "uniprot_id": "F4IFE3_ARATH", "mass": { "chemical_mass": 27069.0, "monoisotopic_mass": 27069.0 }, "refseq": { "ac": "NP_001154515", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154515" }, "gene_names": [], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_001154515", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154515" }, { "id": "F4IFE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IFE3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IFE3", "url": 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"UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IG99" } ] } ], "protein_names": [ { "name": "Protein phosphatase 2C family protein", "type": "synonym", "evidence": [ { "id": "F4IG99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IG99/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IG99", "url": "https://www.uniprot.org/uniprotkb/F4IG99" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IG99", "locus": {} } ], "crossref": [ { "id": "F4IG99", "url": "https://alphafold.ebi.ac.uk/entry/F4IG99", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G05050", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G05050", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00143", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00143", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "3767735", "url": "https://www.ncbi.nlm.nih.gov/gene/3767735", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G05050", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G05050", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EQGETSW", "url": "https://omabrowser.org/oma/group/EQGETSW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47992", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47992", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00481", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00481", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G05050", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G05050", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IG99", "url": "https://www.uniprot.org/uniprotkb/F4IG99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IG99-1", "url": "https://www.uniprot.org/uniprotkb/F4IG99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDRFSTITNLHGDRKQAIFGVYVGHGGVKAAEFAAKNLDKNIVEEVVGKRHELEIAEALKFYFLIIVRLEMMNGKELKPREDMLIRFTLWRIQGSLVVPRGIGDAQLKKWVIAEPETKISRVEHDHEFLILASHGLWDKVSNQEAVDIARPFCLRTEKPLLLAACKKLVDLSASRGSFDDISVMLIPLRQFI", "length": 193, "header": "tr|F4IG99-1|F4IG99_ARATH Isoform 1 of Protein phosphatase 2C family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IG99-1" }, "isoforms": [ { "isoform_ac": "F4IG99-1", "url": "https://www.uniprot.org/uniprotkb/F4IG99/entry#F4IG99-1", "sequence": { "sequence": "MEDRFSTITNLHGDRKQAIFGVYVGHGGVKAAEFAAKNLDKNIVEEVVGKRHELEIAEALKFYFLIIVRLEMMNGKELKPREDMLIRFTLWRIQGSLVVPRGIGDAQLKKWVIAEPETKISRVEHDHEFLILASHGLWDKVSNQEAVDIARPFCLRTEKPLLLAACKKLVDLSASRGSFDDISVMLIPLRQFI", "length": 193, "header": "tr|F4IG99-1|F4IG99_ARATH Isoform 1 of Protein phosphatase 2C family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IG99-1" }, "locus": { "chromosome": "2", "start_pos": 1794035, "end_pos": 1795084, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G05050.1", "url": "https://www.ensemblgenomes.org/id/AT2G05050.1" }, { "database": "Ensembl Peptide", "id": "AT2G05050.1", "url": "https://www.ensemblgenomes.org/id/AT2G05050.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IG99", "url": "https://www.uniprot.org/uniprotkb/F4IG99" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IG99", "url": "https://www.uniprot.org/uniprotkb/F4IG99" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G05050", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G05050", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine phosphatase activity", "id": "GO:0004722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004722", "evidence": [ { "database": "UniProtKB", "id": "F4IG99", "url": "https://www.uniprot.org/uniprotkb/F4IG99" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "abscisic acid-activated signaling pathway", "id": "GO:0009738", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009738", "evidence": [ { "database": "UniProtKB", "id": "F4IG99", "url": "https://www.uniprot.org/uniprotkb/F4IG99" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IG99-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 193, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IG99-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IG99" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IG99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IG99" }, { "id": "PS51746", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PPM-type phosphatase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 189, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IGK0-1", "uniprot_ac": "F4IGK0", "uniprot_id": "F4IGK0_ARATH", "mass": { "chemical_mass": 60483.0, "monoisotopic_mass": 60483.0 }, "refseq": { "ac": "NP_850010", "name": "Basic-leucine zipper (bZIP) 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[3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IGK0", "locus": {} } ], "crossref": [ { "id": "F4IGK0", "url": "https://alphafold.ebi.ac.uk/entry/F4IGK0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd14703", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14703", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "816661", "url": "https://www.ncbi.nlm.nih.gov/gene/816661", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G21235", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G21235", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPRCTTQ", "url": "https://omabrowser.org/oma/group/GPRCTTQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4IGK0", "url": "https://www.orthodb.org/?gene=F4IGK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13690:SF80", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13690:SF80", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_850010", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850010", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G21235", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G21235", "database": 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{ "name": "FBD-like domain family protein", "type": "synonym", "evidence": [ { "id": "NP_850103", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850103" }, { "id": "F4IGN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IGN8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IGN8", "url": "https://www.uniprot.org/uniprotkb/F4IGN8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IGN8", "locus": {} } ], "crossref": [ { "id": "F4IGN8", "url": "https://alphafold.ebi.ac.uk/entry/F4IGN8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G27505", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G27505", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817296", "url": "https://www.ncbi.nlm.nih.gov/gene/817296", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G27505", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G27505", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNKRVME", "url": "https://omabrowser.org/oma/group/CNKRVME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31900:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_850103", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850103", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G27505", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G27505", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IGN8", "url": "https://www.uniprot.org/uniprotkb/F4IGN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IGN8-1", "url": "https://www.uniprot.org/uniprotkb/F4IGN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVARILSYLKLPTGDSVKTSVLSKRWEFLWLMVSSLDLDVINLSRDGGEALARFMHMFLELNRGSSSCLKHDDSMDDCNKRVMEWIAEVVHGGVQHLDVDAKTCGIIQSHPDIYKSTMCSPSVDSMPKYVYVSKTVVSLKLVKVGHEDPKFVVSLPSLKMMHLENILYKNHGVLLIIKMLLSGSPVLEVLTLEFSVPVLTMPRSNLDLVQDYFYSCKPGEIDLTNVPLCMQSTLKYVKINKLITKEESGIKVVNYFLDNSAVLKKLTHSSMEEIQEPESFMKLLTSTKLSRNCQVFIH", "length": 298, "header": "tr|F4IGN8-1|F4IGN8_ARATH Isoform 1 of FBD-like domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IGN8-1" }, "isoforms": [ { "isoform_ac": "F4IGN8-1", "url": "https://www.uniprot.org/uniprotkb/F4IGN8/entry#F4IGN8-1", "sequence": { "sequence": "MVARILSYLKLPTGDSVKTSVLSKRWEFLWLMVSSLDLDVINLSRDGGEALARFMHMFLELNRGSSSCLKHDDSMDDCNKRVMEWIAEVVHGGVQHLDVDAKTCGIIQSHPDIYKSTMCSPSVDSMPKYVYVSKTVVSLKLVKVGHEDPKFVVSLPSLKMMHLENILYKNHGVLLIIKMLLSGSPVLEVLTLEFSVPVLTMPRSNLDLVQDYFYSCKPGEIDLTNVPLCMQSTLKYVKINKLITKEESGIKVVNYFLDNSAVLKKLTHSSMEEIQEPESFMKLLTSTKLSRNCQVFIH", "length": 298, "header": "tr|F4IGN8-1|F4IGN8_ARATH Isoform 1 of FBD-like domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IGN8-1" }, "locus": { "chromosome": "2", "start_pos": 11756566, "end_pos": 11757898, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G27505.1", "url": "https://www.ensemblgenomes.org/id/AT2G27505.1" }, { "database": "Ensembl Peptide", "id": "AT2G27505.1", "url": "https://www.ensemblgenomes.org/id/AT2G27505.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IGN8", "url": "https://www.uniprot.org/uniprotkb/F4IGN8" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IGN8", "url": "https://www.uniprot.org/uniprotkb/F4IGN8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G27505", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G27505", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IGN8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 298, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IGN8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IGN8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IGN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IGN8" }, { "id": "SM00579", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00579" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FBD", "eco_id": "ECO_0000259", "start_pos": 228, "end_pos": 298, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 42, "end_pos": 44 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IGQ2-1", "uniprot_ac": "F4IGQ2", "uniprot_id": "F4IGQ2_ARATH", "mass": { "chemical_mass": 127713.0, "monoisotopic_mass": 127713.0 }, "refseq": { "ac": "NP_180331", "name": "Ubiquitin carboxyl-terminal hydrolase-related protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180331" }, "gene_names": [ { "name": "F15K20.27", "type": "synonym", "evidence": [ { "id": "NP_180331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180331" }, { "id": "F4IGQ2", "database": "UniProtKB", "url": 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"Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IGQ2", "locus": {} } ], "crossref": [ { "id": "F4IGQ2", "url": "https://alphafold.ebi.ac.uk/entry/F4IGQ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G27630", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G27630", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817309", "url": "https://www.ncbi.nlm.nih.gov/gene/817309", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G27630", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G27630", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CFLDCHE", "url": "https://omabrowser.org/oma/group/CFLDCHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22975", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22975", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22975:SF23", "url": 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"MESTTFLKDAVSVKLHAKAKELFANGDHIKALEIIEDMICVNKEDKNIWFLYSEQGYMFTKLSEKAENLDVDFTFKLGAVGCSSEHEKLLSLCAHGFHTLAHHIGSVMYYKKCLKKAKQCLSVSNQSEDSDSSVAQMSLHKNKTNKDLETLIKNAETAIALSKIGKLKGLLEEDDEPEVLESKSSSEPVKNEIKGLRSFWLGLNVKVKRDFMKVSIAKLTSFVQRVYDRPRQNALEQILVSAREDRKWTFWMCQNCSEKFSSAEECKKHLEQEHAAGFKPSKEMDMKRIGKDWARKISVGGWEPVDTGAAVEMIKNRLADVKAFSYKNGWSKEWPLASDDERGKLLKEIKNLLVMFRDLKILPCSVRDCVMQYPLRYFGELEVSKQSLVDSHLVETPQSICFLDCHELNKILNFLKRIKSERDDGIDVVSRAVDSILSSTRVKEKVDFDPQFSLLLLDRRLLKSNNAPINDEGTINVFDPNVYPKAPAQGDDIISWLTDYNSVEKTFPIPIRVHNLDIWVAVLRAVQFTCRTLETKYAKKVQVFNYSVALTAVEDLCISEDERRRNLQEDQWNSYASLLSDRCEEGVLRNSLTTKLFVCAVRDVLEGASDLTFEFPDFEECMNLIRGRKSLSDDIVLKSIAFLKILAHTKVMLIDSKILLIDKSRISLLNDLTRLSVFDNRTYLLELLKNFLLNEIIIMASKAKLDAAAAAEADLLLEEEKKSQSKKRKNTSKKKTSTSISSPLSKTVEHKSSDILEPESTSPSLGKVEEDSMEPDATLSSERGRLEISPNTVNQEEVTQNIPVEDSQSEHLESALRDAATRYNSALDMTLKALLNIQILKEDLMQPFQDHPEEHVPPALRNFFTAIVSDGINVEGVYSCLLRDLLASLEEVISMSSDAAEVLVTILESWHCWKNAERESLVTRLFTLEENERMSCRKCRKKPNYPEQSSYGIVMAADSIRDLKCALGNIEFVDILKVIRMDYTMLCDVKTGGCGITNLVHHILSKCPPVFIIVLEWEKSETEKEISETTKALYWEIDISRMYEGLKPNTKYRLVSMVGCGVEEEEHICIAYENNRWFNLRHDALTREDVGNWKSVVGFCEERKVRPEILFYEATGSIDSLN", "length": 1122, "header": "tr|F4IGQ2-1|F4IGQ2_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IGQ2-1" }, "isoforms": [ { "isoform_ac": "F4IGQ2-1", "url": "https://www.uniprot.org/uniprotkb/F4IGQ2/entry#F4IGQ2-1", "sequence": { "sequence": "MESTTFLKDAVSVKLHAKAKELFANGDHIKALEIIEDMICVNKEDKNIWFLYSEQGYMFTKLSEKAENLDVDFTFKLGAVGCSSEHEKLLSLCAHGFHTLAHHIGSVMYYKKCLKKAKQCLSVSNQSEDSDSSVAQMSLHKNKTNKDLETLIKNAETAIALSKIGKLKGLLEEDDEPEVLESKSSSEPVKNEIKGLRSFWLGLNVKVKRDFMKVSIAKLTSFVQRVYDRPRQNALEQILVSAREDRKWTFWMCQNCSEKFSSAEECKKHLEQEHAAGFKPSKEMDMKRIGKDWARKISVGGWEPVDTGAAVEMIKNRLADVKAFSYKNGWSKEWPLASDDERGKLLKEIKNLLVMFRDLKILPCSVRDCVMQYPLRYFGELEVSKQSLVDSHLVETPQSICFLDCHELNKILNFLKRIKSERDDGIDVVSRAVDSILSSTRVKEKVDFDPQFSLLLLDRRLLKSNNAPINDEGTINVFDPNVYPKAPAQGDDIISWLTDYNSVEKTFPIPIRVHNLDIWVAVLRAVQFTCRTLETKYAKKVQVFNYSVALTAVEDLCISEDERRRNLQEDQWNSYASLLSDRCEEGVLRNSLTTKLFVCAVRDVLEGASDLTFEFPDFEECMNLIRGRKSLSDDIVLKSIAFLKILAHTKVMLIDSKILLIDKSRISLLNDLTRLSVFDNRTYLLELLKNFLLNEIIIMASKAKLDAAAAAEADLLLEEEKKSQSKKRKNTSKKKTSTSISSPLSKTVEHKSSDILEPESTSPSLGKVEEDSMEPDATLSSERGRLEISPNTVNQEEVTQNIPVEDSQSEHLESALRDAATRYNSALDMTLKALLNIQILKEDLMQPFQDHPEEHVPPALRNFFTAIVSDGINVEGVYSCLLRDLLASLEEVISMSSDAAEVLVTILESWHCWKNAERESLVTRLFTLEENERMSCRKCRKKPNYPEQSSYGIVMAADSIRDLKCALGNIEFVDILKVIRMDYTMLCDVKTGGCGITNLVHHILSKCPPVFIIVLEWEKSETEKEISETTKALYWEIDISRMYEGLKPNTKYRLVSMVGCGVEEEEHICIAYENNRWFNLRHDALTREDVGNWKSVVGFCEERKVRPEILFYEATGSIDSLN", "length": 1122, "header": "tr|F4IGQ2-1|F4IGQ2_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IGQ2-1" }, "locus": { "chromosome": "2", "start_pos": 11787398, "end_pos": 11792646, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G27630.1", "url": "https://www.ensemblgenomes.org/id/AT2G27630.1" }, { "database": "Ensembl Peptide", "id": "AT2G27630.1", "url": "https://www.ensemblgenomes.org/id/AT2G27630.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IGQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IGQ2" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser338" }, { "start_pos": 927, "end_pos": 927, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IGQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IGQ2" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr927" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IGQ2", "url": "https://www.uniprot.org/uniprotkb/F4IGQ2" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "F4IGQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IGQ2" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4IGQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IGQ2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IGQ2", "url": "https://www.uniprot.org/uniprotkb/F4IGQ2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G27630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G27630", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IGQ2", "url": "https://www.uniprot.org/uniprotkb/F4IGQ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein deubiquitination", "id": "GO:0016579", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016579", "evidence": [ { "database": "UniProtKB", "id": "F4IGQ2", "url": "https://www.uniprot.org/uniprotkb/F4IGQ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F4IGQ2", "url": "https://www.uniprot.org/uniprotkb/F4IGQ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": 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"https://www.uniprot.org/uniprotkb/F4IGQ2" }, { "id": "PS00028", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00028" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 253, "end_pos": 274, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 338, 927 ], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 142, "end_pos": 144 }, { "start_pos": 255, "end_pos": 257 }, { "start_pos": 545, "end_pos": 547 }, { "start_pos": 680, "end_pos": 682 }, { "start_pos": 730, "end_pos": 732 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IGQ3-1", "uniprot_ac": "F4IGQ3", "uniprot_id": "F4IGQ3_ARATH", "mass": { "chemical_mass": 127342.0, "monoisotopic_mass": 127342.0 }, "refseq": { "ac": "NP_180333", "name": "Ubiquitin carboxyl-terminal hydrolase-related protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180333" }, "gene_names": [ { "name": "F15K20.25", "type": "synonym", "evidence": [ { "id": "NP_180333", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180333" }, { "id": "F4IGQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IGQ3" } ] }, { "name": "F15K20_25", "type": "synonym", "evidence": [ { "id": "NP_180333", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180333" }, { "id": "F4IGQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IGQ3" } ] } ], "protein_names": [ { "name": "Ubiquitin carboxyl-terminal hydrolase-related protein", "type": "synonym", "evidence": [ { "id": "NP_180333", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180333" }, { "id": "F4IGQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IGQ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IGQ3", "url": "https://www.uniprot.org/uniprotkb/F4IGQ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IGQ3", "locus": {} } ], "crossref": [ { "id": "F4IGQ3", "url": "https://alphafold.ebi.ac.uk/entry/F4IGQ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G27650", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G27650", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817311", "url": "https://www.ncbi.nlm.nih.gov/gene/817311", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G27650", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G27650", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VSWLTDY", "url": "https://omabrowser.org/oma/group/VSWLTDY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22975", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22975", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22975:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22975:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_180333", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180333", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G27650", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G27650", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IGQ3", "url": "https://www.uniprot.org/uniprotkb/F4IGQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IGQ3-1", "url": "https://www.uniprot.org/uniprotkb/F4IGQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G34240", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G34240", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IGX9", "url": "https://www.uniprot.org/uniprotkb/F4IGX9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F4IGX9", "url": "https://www.uniprot.org/uniprotkb/F4IGX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 359, "end_pos": 361, "annotation": 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}, { "id": "PTHR12161:SF78", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12161:SF78", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03398", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03398", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_179090", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179090", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G14830", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G14830", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IHD7", "url": "https://www.uniprot.org/uniprotkb/F4IHD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IHD7-1", "url": "https://www.uniprot.org/uniprotkb/F4IHD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"MPPRKVVREVFLIDGKFEKYKTSLSTSSRLLLLRGAHQIPHQIPLISPEPTVCPENPPPGHPSEEDRFSLSLNDLLQLYAVKKGRTKGTFFLSPRKGFRVFDDFPDKDEQWRKSYFFFPVNDLTYGNKTGLFVSEWAARTDLGWESLTIDRIRASGRRIRSRTDLAVSSPPFCPRIIDKADMSLPSSRQTTNKASVSAGKKPETPTSGSGKTIKDPAGKDSEKRAADKKRKQPEETNPSPPRSSRPRHEEKGAKLKGIVKEAPQNLVVLSSRESETCESERRNVPLPAPPMTFADTMRTLVPPGSAIAPFDEMKEVNKENYLRFARKLGKLILEFNSVFCSHEDQLFDKDVEIESFKRSEDENAKAVEKANKVMNRMKAAELQVQKLEVNNIDLTAKLKAGKNAYLDAIEKETQARADLRTCKEKMKKMEEEQAEMIVAARTDERRKVRAQFHDFSSKYGNFFKESEEVETLKVRVAEAKANRELLEEIEKGEIPDLSKELESVRADEEKFARHAAEPKTPRPDPTELTSLLADTPSEVAAESIPPAEVAIIDEGGSNKGSTSEAGIAAMFPVDVEKDSGKTE", "length": 583, "header": "tr|F4IHH0-1|F4IHH0_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IHH0-1" }, "isoforms": [ { "isoform_ac": "F4IHH0-1", "url": "https://www.uniprot.org/uniprotkb/F4IHH0/entry#F4IHH0-1", "sequence": { "sequence": "MPPRKVVREVFLIDGKFEKYKTSLSTSSRLLLLRGAHQIPHQIPLISPEPTVCPENPPPGHPSEEDRFSLSLNDLLQLYAVKKGRTKGTFFLSPRKGFRVFDDFPDKDEQWRKSYFFFPVNDLTYGNKTGLFVSEWAARTDLGWESLTIDRIRASGRRIRSRTDLAVSSPPFCPRIIDKADMSLPSSRQTTNKASVSAGKKPETPTSGSGKTIKDPAGKDSEKRAADKKRKQPEETNPSPPRSSRPRHEEKGAKLKGIVKEAPQNLVVLSSRESETCESERRNVPLPAPPMTFADTMRTLVPPGSAIAPFDEMKEVNKENYLRFARKLGKLILEFNSVFCSHEDQLFDKDVEIESFKRSEDENAKAVEKANKVMNRMKAAELQVQKLEVNNIDLTAKLKAGKNAYLDAIEKETQARADLRTCKEKMKKMEEEQAEMIVAARTDERRKVRAQFHDFSSKYGNFFKESEEVETLKVRVAEAKANRELLEEIEKGEIPDLSKELESVRADEEKFARHAAEPKTPRPDPTELTSLLADTPSEVAAESIPPAEVAIIDEGGSNKGSTSEAGIAAMFPVDVEKDSGKTE", "length": 583, "header": "tr|F4IHH0-1|F4IHH0_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IHH0-1" }, "locus": { "chromosome": "2", "start_pos": 6554847, "end_pos": 6557168, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G15110.1", "url": "https://www.ensemblgenomes.org/id/AT2G15110.1" }, { "database": "Ensembl Peptide", "id": "AT2G15110.1", "url": "https://www.ensemblgenomes.org/id/AT2G15110.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 206, "start_aa": "Thr", "end_pos": 206, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr206", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IHH0", "url": "https://www.uniprot.org/uniprotkb/F4IHH0" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IHH0", "url": "https://www.uniprot.org/uniprotkb/F4IHH0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G15110", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G15110", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IHH0", "url": "https://www.uniprot.org/uniprotkb/F4IHH0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IHH0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 583, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IHH0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IHH0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 206 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 127, "end_pos": 129 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IHN6-1", "uniprot_ac": "F4IHN6", "uniprot_id": "F4IHN6_ARATH", "mass": { "chemical_mass": 94770.0, "monoisotopic_mass": 94770.0 }, "refseq": { "ac": "NP_180362", "name": "Ring/U-Box superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180362" }, "gene_names": [ { "name": "T1E2.13", "type": "synonym", "evidence": [ { "id": "NP_180362", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180362" }, { "id": "F4IHN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IHN6" } ] }, { "name": "T1E2_13", "type": "synonym", "evidence": [ { "id": "NP_180362", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180362" }, { "id": "F4IHN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IHN6" } ] } ], "protein_names": [ { "name": "Ring/U-Box superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_180362", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180362" }, { "id": "F4IHN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IHN6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IHN6", "url": "https://www.uniprot.org/uniprotkb/F4IHN6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IHN6", "locus": {} } ], "crossref": [ { "id": "cd16647", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16647", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "817339", "url": "https://www.ncbi.nlm.nih.gov/gene/817339", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G27950", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G27950", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NDMRIDM", "url": "https://omabrowser.org/oma/group/NDMRIDM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4IHN6", "url": "https://www.orthodb.org/?gene=F4IHN6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46519", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46519", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46519:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46519:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_180362", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180362", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G27950", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G27950", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IHN6", "url": "https://www.uniprot.org/uniprotkb/F4IHN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IHN6-1", "url": "https://www.uniprot.org/uniprotkb/F4IHN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIAGLQNILVIDSSFRRDSEVQATRQRENEGRSSVRASSLLQMWRELEDDHVMGHARERDGERRSVSSPSNTMRGNGCDSNISAHDIVRDSVNLGENELGGWSPTQSHVGSHNSSEDLGPFQSEHFSDLGMGERERVRQIFREWTSSGTGQHTDSASQATNSSRAEWLGETEQERVRIIREMVQMNSQQRPALGDLREEQPIEGANQIERVLDGIVVNPNSIQNEHARRGIRKLCGRQVWVDMLKMAEMERQRELEGLMQHHAVSNFAHRNRIQALLRGRFLRNGDNDDKEKPTSSAATELGFLRERHTVSELREEFISRLDRSASGQASSSHSETSSNAETDHNRGEQNDLNCLDSINDADGGSDQNGREADNQSSLDEITNSGRCCSRSTSLEERTARVEGWQRSEIDDFSQRRNDTEVDLNATGCSSSSIHGDEIRYGCQLRETIEIPYEQSLQISEEIATMGPINRTTNFQENLGESINLTVTLEEQTVEQMENEESDWQLINGATSAWRDDAEEEADTDVPENFPNQLSQLSSVDEDREANILGELTEMQPDDDAASLQSTIQDWSEEHSDQDTVSMGRATTFFPPDDGNENNMELRELSSRRRVSNLLQSGFRENLSQLIQSYMDRRSQNPVDWEEAETYSDHTIVGEDTEQQDDAQSGGQELDAVESPPLTLPSPVIPIQPRWDHDRSHSNWPAHDLHQGIGMDWDSINDLRVDMGRIQQRMDNLQRMLEACMEMQLELQRSIRQEVSAAMHRSTDQPGPSKDTASYESKWEYVRKGICCVCCESNIDSLLYRCGHMNTCEKCAKKLVEAGGKCPMCQAPVIEVVRAYSIL", "length": 839, "header": "tr|F4IHN6-1|F4IHN6_ARATH Isoform 1 of Ring/U-Box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IHN6-1" }, "isoforms": [ { "isoform_ac": "F4IHN6-1", "url": "https://www.uniprot.org/uniprotkb/F4IHN6/entry#F4IHN6-1", "sequence": { "sequence": "MAIAGLQNILVIDSSFRRDSEVQATRQRENEGRSSVRASSLLQMWRELEDDHVMGHARERDGERRSVSSPSNTMRGNGCDSNISAHDIVRDSVNLGENELGGWSPTQSHVGSHNSSEDLGPFQSEHFSDLGMGERERVRQIFREWTSSGTGQHTDSASQATNSSRAEWLGETEQERVRIIREMVQMNSQQRPALGDLREEQPIEGANQIERVLDGIVVNPNSIQNEHARRGIRKLCGRQVWVDMLKMAEMERQRELEGLMQHHAVSNFAHRNRIQALLRGRFLRNGDNDDKEKPTSSAATELGFLRERHTVSELREEFISRLDRSASGQASSSHSETSSNAETDHNRGEQNDLNCLDSINDADGGSDQNGREADNQSSLDEITNSGRCCSRSTSLEERTARVEGWQRSEIDDFSQRRNDTEVDLNATGCSSSSIHGDEIRYGCQLRETIEIPYEQSLQISEEIATMGPINRTTNFQENLGESINLTVTLEEQTVEQMENEESDWQLINGATSAWRDDAEEEADTDVPENFPNQLSQLSSVDEDREANILGELTEMQPDDDAASLQSTIQDWSEEHSDQDTVSMGRATTFFPPDDGNENNMELRELSSRRRVSNLLQSGFRENLSQLIQSYMDRRSQNPVDWEEAETYSDHTIVGEDTEQQDDAQSGGQELDAVESPPLTLPSPVIPIQPRWDHDRSHSNWPAHDLHQGIGMDWDSINDLRVDMGRIQQRMDNLQRMLEACMEMQLELQRSIRQEVSAAMHRSTDQPGPSKDTASYESKWEYVRKGICCVCCESNIDSLLYRCGHMNTCEKCAKKLVEAGGKCPMCQAPVIEVVRAYSIL", "length": 839, "header": "tr|F4IHN6-1|F4IHN6_ARATH Isoform 1 of Ring/U-Box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IHN6-1" }, "locus": { "chromosome": "2", "start_pos": 11899160, "end_pos": 11904062, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G27950.1", "url": "https://www.ensemblgenomes.org/id/AT2G27950.1" }, { "database": "Ensembl Peptide", "id": "AT2G27950.1", "url": "https://www.ensemblgenomes.org/id/AT2G27950.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, 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"url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G34357", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PDQMKHR", "url": "https://omabrowser.org/oma/group/PDQMKHR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48445", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48445", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48445:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48445:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25772", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25772", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_973597", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_973597", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G34357", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G34357", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IHU8", "url": "https://www.uniprot.org/uniprotkb/F4IHU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IHU8-1", "url": "https://www.uniprot.org/uniprotkb/F4IHU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELLCDDIGTSMCLTPSEPDLPVSEDFGEYMRSRLSQSKRPDHEHLCAVIEELSKTLAEDNHRRTPVAYFACTCRSLDSLFSAHAEPPVDVVQPHIVILSLVFPKVSAGVLKRDGLALRLVLNVLRLKSATPECLISGLKCLVHLLTTVESIMVNEGSDSYNILLNFVTHSDGKVRKLASSCLRDVLQKSHGTKAWQSVSGAITEMFQNYLDLAHKSEVGSTEGARGAKQVLYILSTLKECLALMSKKHIATLIEGFKVLMILRDPYITRPVIDSLNAVCLNPTSEVPVEALLEVLSLAAGLFSGHETSADAMTFTARLLKVGMTRSFTLNRDLCVVKLPSVFNGLNDIIASEHEEAIFAATDALKSLIFSCIDESLIREGVNEIRNSNLNVRKPSPTVIEKLCATVESLLDYKYHAVWDMAFQVVSAMFDKLGEHSAYFMRNTLQGLSDMQDLPDEGFPYRKQLHECVGSALGAMGPETFLSIVRLNLEANDLSEVKVWLFPILKQYTVGGRLSFFTEAIFSMVETMSHKAQKLKLQGLPVASRSVDSLVYSLWALLPSFCNYPVDTVESFADLGRILCGVLQTQAETHGIICASLNILIQQNKEVVEGKEVPTNDASPAMQRATARYDSQHAAANLKVLRLCAPKLLDVLSRIFHECSKDDGGSLQSAIGNLASIAEKKTVSKLLFKTLQELLEATKTAIAQDESPVSGMDVDNTADKNSSSNLRARLFDLLVSLLPGLDGQEVDTIFSSLKPAMQDSKGLIQKKAYKVLSVILKSSDGFVSKNLEELLVLMHNICHVSAKRHKLDCLYFLLAHASRTDDLKERKDIVSSFLPEVILALKEVNKKTRNRAYDVLVQIGHAYADEENGGDNEKLHGYFDMVVGCLAGEKPQMISAAVKGVARLTYEFSDLISSAYNLLPSTFLLLQRKNKEITKANLGLLKVLVAKSPVEGLHANLKSMVEGLLKWPEGTKNLFKAKVRLLLEMLIKKCGTEAVKSVMPEEHMKLLTNIRKIKERKEKKYAAGSDISKSQHSKDTSSKVSRWNDTKIFSDVYADSEDSDGDDMDAESHGRSKASSLLKSKASALRSKKSRNQSHLEVDESDDEPLDLMDQHKTRLALRSSELRKRKADSDEEAEFDVEGRLVIREGERSKRKELSDADSDAKSSKGSRFSGNSSKKNQKRMKTSESGYAYTGKEYASKKASGDLKKKDKLEPYAYWPLDRKMMSRRPEQRAVAVRGMSSVVKMAKKMEGKSAAEALATTKFKKFKRSGQKKSAGKKKNK", "length": 1280, "header": "tr|F4IHU8-1|F4IHU8_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IHU8-1" }, "isoforms": [ { "isoform_ac": "F4IHU8-1", "url": "https://www.uniprot.org/uniprotkb/F4IHU8/entry#F4IHU8-1", "sequence": { "sequence": "MELLCDDIGTSMCLTPSEPDLPVSEDFGEYMRSRLSQSKRPDHEHLCAVIEELSKTLAEDNHRRTPVAYFACTCRSLDSLFSAHAEPPVDVVQPHIVILSLVFPKVSAGVLKRDGLALRLVLNVLRLKSATPECLISGLKCLVHLLTTVESIMVNEGSDSYNILLNFVTHSDGKVRKLASSCLRDVLQKSHGTKAWQSVSGAITEMFQNYLDLAHKSEVGSTEGARGAKQVLYILSTLKECLALMSKKHIATLIEGFKVLMILRDPYITRPVIDSLNAVCLNPTSEVPVEALLEVLSLAAGLFSGHETSADAMTFTARLLKVGMTRSFTLNRDLCVVKLPSVFNGLNDIIASEHEEAIFAATDALKSLIFSCIDESLIREGVNEIRNSNLNVRKPSPTVIEKLCATVESLLDYKYHAVWDMAFQVVSAMFDKLGEHSAYFMRNTLQGLSDMQDLPDEGFPYRKQLHECVGSALGAMGPETFLSIVRLNLEANDLSEVKVWLFPILKQYTVGGRLSFFTEAIFSMVETMSHKAQKLKLQGLPVASRSVDSLVYSLWALLPSFCNYPVDTVESFADLGRILCGVLQTQAETHGIICASLNILIQQNKEVVEGKEVPTNDASPAMQRATARYDSQHAAANLKVLRLCAPKLLDVLSRIFHECSKDDGGSLQSAIGNLASIAEKKTVSKLLFKTLQELLEATKTAIAQDESPVSGMDVDNTADKNSSSNLRARLFDLLVSLLPGLDGQEVDTIFSSLKPAMQDSKGLIQKKAYKVLSVILKSSDGFVSKNLEELLVLMHNICHVSAKRHKLDCLYFLLAHASRTDDLKERKDIVSSFLPEVILALKEVNKKTRNRAYDVLVQIGHAYADEENGGDNEKLHGYFDMVVGCLAGEKPQMISAAVKGVARLTYEFSDLISSAYNLLPSTFLLLQRKNKEITKANLGLLKVLVAKSPVEGLHANLKSMVEGLLKWPEGTKNLFKAKVRLLLEMLIKKCGTEAVKSVMPEEHMKLLTNIRKIKERKEKKYAAGSDISKSQHSKDTSSKVSRWNDTKIFSDVYADSEDSDGDDMDAESHGRSKASSLLKSKASALRSKKSRNQSHLEVDESDDEPLDLMDQHKTRLALRSSELRKRKADSDEEAEFDVEGRLVIREGERSKRKELSDADSDAKSSKGSRFSGNSSKKNQKRMKTSESGYAYTGKEYASKKASGDLKKKDKLEPYAYWPLDRKMMSRRPEQRAVAVRGMSSVVKMAKKMEGKSAAEALATTKFKKFKRSGQKKSAGKKKNK", "length": 1280, "header": "tr|F4IHU8-1|F4IHU8_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IHU8-1" }, "locus": { "chromosome": "2", "start_pos": 14498590, "end_pos": 14505809, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G34357.1", "url": "https://www.ensemblgenomes.org/id/AT2G34357.1" }, { "database": "Ensembl Peptide", "id": "AT2G34357.1", "url": "https://www.ensemblgenomes.org/id/AT2G34357.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1050, "end_pos": 1050, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1050" }, { "start_pos": 1053, "end_pos": 1053, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Tyr1053" }, { "start_pos": 1056, "end_pos": 1056, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1056" }, { "start_pos": 1059, "end_pos": 1059, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1059" }, { "start_pos": 1068, "end_pos": 1068, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1068" }, { "start_pos": 1080, "end_pos": 1080, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1080" }, { "start_pos": 1083, "end_pos": 1083, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1083" }, { "start_pos": 1094, "end_pos": 1094, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1094" }, { "start_pos": 1101, "end_pos": 1101, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1101" }, { "start_pos": 1130, "end_pos": 1130, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1130" }, { "start_pos": 1185, "end_pos": 1185, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser1185" }, { "start_pos": 396, "end_pos": 396, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser396" }, { "start_pos": 707, "end_pos": 707, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser707" }, { "start_pos": 831, "end_pos": 831, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser831" }, { "start_pos": 832, "end_pos": 832, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IHU8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IHU8" } ], "site_lbl": "Ser832" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IHU8", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "F4IHU8", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "F4IHU8", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IHU8", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G34357", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G34357", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "M0R3M8-1", "protein_name": "Ribosomal RNA processing 12", "gene_name": "Rrp12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRSGKLPSGVSAKLKRWKKGHSSDSNPTTCRHRQAARSRFFSRPSGKSDLTVDAVKLHNELQSGTLSLGKSQAPETTMDQDPEVAFTEKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESLAAVAYLLNLVLKRVPSPVLMKKFSDTSKAFMNIMSAQASSGSTSALRWVLSCLAILLRKQDLEAWGYPITLQVYHGLLSFTVHAKPKVRKAAQHGVCSVLKGSDFMFGEEAPAHHPAAVSTAKFCIQEIEKSGGSREATTTLHMLTLLKDMLPCFPEGLVKSCSETLLRVMTLNHVLVTACAMQAFHNLFHAKPSPSTLSAELNAQIITALYDYVPSENDLQPLLAWLKVMEKAHINLVRLQRDLGLGHLARFFGIAVTCLLSPHSQVVAAATQTLKEILRECVAPHVADIGSVTSSASGPPQYIAKMFRAVEEGLTYRFHAAWSSVLQLLGVFFEACGKQAHPVMKKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVRETRLGFFTTYFLPLATALKRKAMDLAQAGSAVESKIYDTLQWQIWTLLPGFCIRPTDVAASFKGLARTLGTAISERPDLRVTVCQALRTLITKGCEAEADRAEVSRFAKNFLPILFNLYGQPVAAGEAEAPRRAVLETIKTYLTITESQLVNGFLEKATEKVLDPASSDFTRLSVLDLVVALAPYSDEAAISKLYSTIRPYLESKVHGVQKKAYRVLEEVCASSQGPAARFVQSHLDDLKKTLLDSLQSTSSPAKRPRLKCLIHIVKKLSAEHEEFIAALIPEVILCTKEVSVGARKNAFTLLVEMGHAFLRFDSSQEEALQRYLVLIYPGLLGAVTTVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVVVMDVVHLAKHVQLVLEAIGKLSDDMRRHFRMKLRNLFIKFIRKFGSVFELVKDLLPAEYHKVLVNIRKAETRAKKHRALSQAAMEEEEEEEEEKPVQSKGDSIEEILADSEDEDEEEERSQGKEQRKLARQRSRAWLKEGGGDEPLNFLDPKVAHRVLATQPGPGRGKKKDHGFKLSADGRLIIREEEDGDKVEEEDVTKGEDEEMTDVMEDASVRSKKKLKRQREDEEDELEIPPRYQAGGSGIHRPVAKKAAPGAEYKAKKAKGDVKRKGRLDPYAYVPLNRTKLNRRKKVKLQGQFKGLVKAAQRGSQVGHKLHRKDRRP", "length": 1295 }, "evidence": [ { "id": "F4IHU8", "url": "https://omabrowser.org/oma/group/F4IHU8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q12754-1", "protein_name": "Ribosomal RNA-processing protein 12", "gene_name": "RRP12", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDQDKVAFLLELEDKLAKIRSQVNSKLENQKHIAIILTAVEENIAGQATNDVSKNIVNYIISFMSLLDQAVDPSTHEIKDIQLASSSTYLLDLIFHYSPKVLLRSKFSEILTKIAPCITAEKANAPLIRAAIGCLESLLIAQDAQAWNNTYDLNVTPKRGLQGILELSLDVRPKVRKRALDAVHAVLLNPPVAPTAEHVAAVFVADFCDKQLAGILNDLSNLSNKQLKAQKTKEDINASVMRSLRLITSVVSTGQWPSSQIEPLCDVLLGVTKSSEQYLVSASFECFESMFKTMAETTISSGLAENKYLRVLDTIFALKPSNVDTLLTKSWIAVVIKGMSTYATHQPLKALRKIPGVFHIMCTYLASETPEVYQAASQCLISILSESVKDDLLLYTPSVDEKVFKNVDEIISQIAKTFIDFLSIRYSHCSREILKILVAAFNKFRYRSNPHFLKSLKIVDTWRVNEEQFMDLRNEIELVIGASISAMGPEMILAEAPLNLDNPSSERPGRAWLLPLIRDYTKNANLATFQNELAPYIKSFQSKFDKVPEESIQLRVFQTIVDQIWSTLPRFCELPMDLRESFTDEFASELSSLLYSEVELRTTICHALKVLAESNVSYAEESSSHNVLLLQRFPISEAQKNIEYLSTKSTNLLAVLFNVYTQTTPNARSYILETIDQYLKITSKEDLEKTFNNVCGLLKNSMNEESSGNVNKEKKKPQLTATLLDLIICMITYLPVSSYSALFSMFSLTVNSADALIQKRAYRIITKLSELKSGSTAVAQFISDIENVMVDSASSVQTSAKAARLTAIKTIVELLPLDHLDFIVRTVAEVILSTKDVNEKSRETAFDTLICMGRKMNEPNGIIKLFQIPGYDPTTPDQSSSISEFFKIISAGLIGESQHMVSSSITGYACLVFEFKNELDSGILMDIYDTIELYLTSNSREIVKSAIGFTKVCVLGLPEELMRPKVPELLLKLLRWSHEHTGHFKAKVKHIIERLIRRFGYDYIEANFPEEDRRLLTNIRKMRNRNKRKDEEVTTGVSDVAATKGSRFMSAFDEAVYGSDEENDNGSDQEENVAGGKMKNGAKQFIVESGDNPLDLLDSQTLAHISSTRPKKFNKNQNRARFNDDAFNFDSEGKLVVKGQPKPSTNVDDPLSAVTSGINAYLEAVKSGPVRGQRNKLKFRKNGKDSDEFGDDDDGEKDSRLMRGRVNQGNKIGKHNKKGPKFKSRKKL", "length": 1228 }, "evidence": [ { "id": "F4IHU8", "url": "https://omabrowser.org/oma/group/F4IHU8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54UV2-1", "protein_name": "ETS domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKTISELFPSLRENSSSETNKRLYAVLTAVTDLIRFNKAPINATSYFAIILKTITENKHKENQTPDLLKLFSLILPQVSIPIIKNQSVNIILQMINILEKYVTQETTLNSTMSNDEQSLVKSGTYILGYVLVLAESNQWSTPEYLRGYSYILKLSVNNQQSKIRQKAAEQVILVLNSIGAIQTNAKGGGVHKHLANVTSQFSHEIFTNVTHETMGTAFYALNIVTEALCLLPPSLISLLLEDIIKLTSLSNSPLTIACYKAIGSLFFKTNPLIGSHIQQLIEVLFQHPPSGIDYKSTVSYTELLTQSYLYFVKLEPKLCNQHVHKYFSILMNNFGSDKAEITKCTMNGFKSVIYECINLEVIQQGIYSFQQGSGNANRELSPLESIISTIESGLRLTFKSSWDLVLMIISALFEQLGPNAYPIMNNTLAGLDQLYHSPEFHFQTHCRQVFIQVLSSIGPKNFLKILPLNLESHPNDKIKINRNWLLPLMRDNIKYTQLSFFIEYFYPMAIAMKERGKQVEMDGRLVEAKNLEILYSQVWDLLPGFLNHPLDSDVSFRVIARNLGVALSDEPGLRIVICAALTQMINKLKDTQITKPPVYIPLRKQHHLVTQERATQLLKSVSVFSKNYLPILFNIFPTSNQDQRYYILNAIEALVSITDSINLNTIFNSLITKLVEALTLEGIEKKPTQNSMDTTTTTTTTTTPKEKTKKYYLTDLTIGFVKHLDEENIKVLYKIIKPQLKCSDPGLQKRSYKILVKICEYHESFILQNLTKIKALLVSNLMQSPSTIKKTRLKCLREIIISLTKSSYNKHLLTEEELELVAINENEKQLENTTTTTTTTTTTTTTTTTSTDNKPKVKVNIGWVQLKTKFIPSLIPEIILCTKETNVKCREIANELIIEIGKVMCLISAKLVKPKKGVSMEDTITIAHNEAIHEYLQLMMAGLASITPHMVSASIVSIARVIHEFYRDINEEFVGQLVTTVLVLLASPHREIVKAVFGLVRVVIATFKDTKSIESQLEVLVNGLAKWGGIDKNYFRTIVQILLERLIKRFGFDQIYQLVPEDFKKVVTNIRKKNEKKEKAKELSRNGGGVDSNENMDENGDDSKSQKSKKNKKSKNTSGGGGDDDDEQMLASDEEHSDRDHSEDDADIEEFLFNVKPKKTKKDTKDNFLIKEGEDPIDFLDRNAFSHLSAKAAADIVAKQMFAKAAKNGGKLQNPFQLDEDGRMIIESSDSEDEGQKRKRERKKSFLDQVFEENEEAYERKAGYHVTKAKGLKNKFKQDNHDNSDYSDDDIDENLSRYNDDLKSNFTRRTNAKSVRGGGGGAKSVMGGAKSVKSTRTTNNNNKNEGRIETATLRYNRVRGVDHLVNYQDRDNKSTKTVAKTKGDNRKRDQKFEPYSYIKLDPKALNKRKGARPTSFTNVKKKGGKK", "length": 1427 }, "evidence": [ { "id": "F4IHU8", "url": "https://omabrowser.org/oma/group/F4IHU8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5JTH9-1", "protein_name": "RRP12-like protein", "gene_name": "RRP12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRSGKLPSGVSAKLKRWKKGHSSDSNPAICRHRQAARSRFFSRPSGRSDLTVDAVKLHNELQSGSLRLGKSEAPETPMEEEAELVLTEKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESLAAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSAQASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHPKPKIRKAAQHGVCSVLKGSEFMFEKAPAHHPAAISTAKFCIQEIEKSGGSKEATTTLHMLTLLKDLLPCFPEGLVKSCSETLLRVMTLSHVLVTACAMQAFHSLFHARPGLSTLSAELNAQIITALYDYVPSENDLQPLLAWLKVMEKAHINLVRLQWDLGLGHLPRFFGTAVTCLLSPHSQVLTAATQSLKEILKECVAPHMADIGSVTSSASGPAQSVAKMFRAVEEGLTYKFHAAWSSVLQLLCVFFEACGRQAHPVMRKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVQETRLGFFTTYFLPLANTLKSKAMDLAQAGSTVESKIYDTLQWQMWTLLPGFCTRPTDVAISFKGLARTLGMAISERPDLRVTVCQALRTLITKGCQAEADRAEVSRFAKNFLPILFNLYGQPVAAGDTPAPRRAVLETIRTYLTITDTQLVNSLLEKASEKVLDPASSDFTRLSVLDLVVALAPCADEAAISKLYSTIRPYLESKAHGVQKKAYRVLEEVCASPQGPGALFVQSHLEDLKKTLLDSLRSTSSPAKRPRLKCLLHIVRKLSAEHKEFITALIPEVILCTKEVSVGARKNAFALLVEMGHAFLRFGSNQEEALQCYLVLIYPGLVGAVTMVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVTVMDVAHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVKRLLPEEYHRVLVNIRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILADSEDEEDNEEEERSRGKEQRKLARQRSRAWLKEGGGDEPLNFLDPKVAQRVLATQPGPGRGRKKDHGFKVSADGRLIIREEADGNKMEEEEGAKGEDEEMADPMEDVIIRNKKHQKLKHQKEAEEEELEIPPQYQAGGSGIHRPVAKKAMPGAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRGSQVGHKNRRKDRRP", "length": 1297 }, "evidence": [ { "id": "F4IHU8", "url": "https://omabrowser.org/oma/group/F4IHU8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P5B0-1", "protein_name": "RRP12-like protein", "gene_name": "Rrp12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRSGKLPSGVSAKLKRWKKGHSSDSNPATCRHRQAARSRFFSRPSGKSDLTVDAVKLHNELQSGTLSLGKSQAPETTMDQDPEVAFTEKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAALMTTMEAVESPESLAAVAYLLNLVLKRVPSPVLMKKFSDTSKAFMDIMSAQASSGSTSALRWVLSCLAILLRKQDLEAWGYPITLQVYHGLLSFTVHAKPKIRKAAQHGVCSVLKGSDFMFGEKAPAHHPAAVSTAKFCIQEIEKSGGSKEATTTLHMLTLLKDMLPCFPEGLVKSCSETLLRVMTLNHVLVTACAMQAFHNLFHAKPSPSTLSAELNAQIVTALYDYVPSENDLQPLLAWLKVMEKAHINLVRLQRDLGLGHLARFFGTAVTCLLSPHSQVAAAATQTLKEILKECVAPHIADIGSVTSSASGPPQYITKMFRAVEEGLTYKFHAAWSSVLQLLGVFFEACGKQAHPVMKKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVRETRLGFFTTYFLPLATTLKRKAMDLAQAGSTVESKIYDTLQWQIWTLLPGFCTRPTDVAASFKGLARTLGTAINERPDLRVTVCQALRTLITKGCEAEADRAEVSRFAKNFLPILFNLYGQPVAAGEAAAPRRAVLETIKTYLTITEAQLVNSFLEKATEKVLDPASSDFTRLSVLDLVVALAPYSDEAAISKLYSTIRPYLESKVHGVQKKAYRVLEEVCASSQGPAARFVQSHLDDLKKTLLDSLRTTSSPAKRPRLKCLIHIVKTLSAEHEEFIAALIPEVILCTKEVSVGARKSAFTLLVEMGHAFLRFGSNQEDALQRYLVLIYPGLLGAVTTVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVVVMDVVHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFIKFTRKFGFELVKGLLPAEYHKVLINIRKAETRAKKHRALSQAAVEEEEEEEEEEEPVQSKGDSIEEILADSEDEDEEEERGRGKEQRKLARQRSRAWLKEGGGDEPLNFLDPKVAHRVLATQPGPGRGKKRDHGFKLSADGRLIIREEEDGNKVEEEDGTKGEDEDMTDAMEDASVRSKKKLKRQREDEEDELEIPPRYQAGGSGIHRPVAKKAAPGAEYKAKKAKGDVKKKGRLDPYAYVPLNRSKLNRRKKVKLQGQFKGLVKATQRGSQAGHKLRRKDRRRP", "length": 1295 }, "evidence": [ { "id": "F4IHU8", "url": "https://omabrowser.org/oma/group/F4IHU8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VYA7-1", "protein_name": "RRP12-like protein", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGKFRSKLKRNGKGKTWSRGESATSNPTQMKHRMKAKSRFFQPNLSLAAATTTGLTMEAVHKHEQSQAFNAETTTVNDVAGSLRSFKLDDDDDGMSGSGTAPTGTAPTGTIKTFQTFASNYSGCSNTCFQKLVTSFRSSSALHKEMLAILSALTEIIRENGGGESSTEYFLLLMEQIEAATEERDIVAGVTLLAMGINSVPAPVLKKRFAQTADTMQRLLQRFMESTNQSVIRHVIGCLSVILRAQDYAAWSYSSTFQYFDAILAFSIHSQPKIRKAAQHAIALIIHGSCFMLPAIKSDDNEMDEAVEQPKVKHHPASSRVAKFCLAQFKPEVLANAQTTVLHTLELLKDTLYGFKTEDIRSVCEHLLSIMTAANVLVRTNCFQTLYSLFLKKSPNLNASLCAKLLAAIHEYRPDKSDIRQTIAWVTVLKEGHLHLATMQLDLCMQALPRLIDVCTTDLWLSDQKELVAGVSNCIKELLQDCVSRACATAEDAQCNRQSVSRIIASLHKMLNAPFGEISRFVILIFSFVFEACGKLFGSELTPPLMTICKRYDTQSAHRLQIEHTVISAIKALGPELVLTAIPLADGKGVMQLERSWLLPLLREGANGASLQFFKEKIVALAMDCQLKWKEFAEAKNNSSSHIYELLCCQLWGLFPGFCRQPRDPEYLRYLAPTLGAAVEKNPEFRPPIYDGLMELLGDNQSAECHQAIGQYAKNFLPRLFNIYTQKPNGTYEADQRKRVLEVIRLYISRAPADVQLELFENAQEQLAASALASFEYDAFFDINAAIVRVQTCKGIKAYFDKYMAPILRNDKSKLVAKDEQKLKKQQRKTYELLRELMTSELPSCQKFTRKNSIVLQQILLDSFNTSCNVCQASRLHCLKSLIDCHSNLAYNDQLVMKAIPEAVLNYKEFSNYKEQVAEQLIKSITQLYHDAGKINDFVDILTAGFAGDEMLVTNTILAFRAVLQQQGEHLTVATLEFVLQQVSVFLVQKSRKQAEAAIAFLITFIKVMPIPLVANHLEAIMRSLSAMTKDTKRYCRIQIGYLLKKLCIRFSPGELAGFVPGDDDVIHRRLKMIRKRTRRDLRKKQNLEAQEDSSDDELVSGLQEKSYTIDDMLADSDSDLPEDMDAKDEAGAAAAASKRSKNAKQQKSTYIREDPDEIVDLADLKSIGNVLTSGSAQTATPAQSQKTKAQLPNGGFKTADDGRLIISDKALRGQGGNDQSDDDSDSDASMAYGTVAKQPKVKRGMEDDSSDEDKLQQKLVPKRVRKGDDAMSMKSGKTTASSRYTAGGKGIHRQLTAGNSDAMSVKSGKSTSRPAGSEYGSKKAKGDMKKSGKLDPYAYIPLTRNNLNKRKRSMNSRKFKSVLRGAGAENGGAGGGRVSKKYK", "length": 1384 }, "evidence": [ { "id": "F4IHU8", "url": "https://omabrowser.org/oma/group/F4IHU8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F4IHU8", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F4IHU8", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IHU8", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F4IHU8", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1044, "end_pos": 1046, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1092, "end_pos": 1094, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1173, "end_pos": 1175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IHU8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1280, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IHU8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IHU8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IHU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" }, { "id": "PF08161", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08161" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRP12 HEAT", "eco_id": "ECO_0000259", "start_pos": 352, "end_pos": 657, "start_aa": "Ser", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4IHU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IHU8" }, { "id": "PF25772", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25772" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRP12 N-terminal HEAT", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 287, "start_aa": "Pro", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 396, 707, 831, 832, 1050, 1053, 1056, 1059, 1068, 1080, 1083, 1094, 1101, 1130, 1185 ], "sequon_annotation_sites": [ { "start_pos": 1044, "end_pos": 1046 }, { "start_pos": 1092, "end_pos": 1094 }, { "start_pos": 1173, "end_pos": 1175 }, { "start_pos": 721, "end_pos": 723 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 15 }, { "field": "total_sites", "count": 15 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IHX8-1", "uniprot_ac": "F4IHX8", "uniprot_id": "F4IHX8_ARATH", "mass": { "chemical_mass": 19509.0, "monoisotopic_mass": 19509.0 }, "refseq": {}, "gene_names": [ { "name": "T31E10.8", "type": "synonym", "evidence": [ { "id": "F4IHX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IHX8" } ] }, { "name": "T31E10_8", "type": "synonym", "evidence": [ { "id": "F4IHX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IHX8" } ] } ], "protein_names": [ { "name": "Cytomegalovirus UL139 protein", "type": "synonym", "evidence": [ { "id": "F4IHX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IHX8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IHX8", "url": "https://www.uniprot.org/uniprotkb/F4IHX8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IHX8", "locus": {} } ], "crossref": [ { "id": "AT2G34580", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G34580", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "818022", "url": "https://www.ncbi.nlm.nih.gov/gene/818022", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "818023", "url": "https://www.ncbi.nlm.nih.gov/gene/818023", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021042", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021042", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G34580", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G34580", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ath:AT2G34585", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G34585", "database": "KEGG 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37214:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12507", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12507", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G34580", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G34580", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "AT2G34585", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G34585", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IHX8", "url": "https://www.uniprot.org/uniprotkb/F4IHX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IHX8-1", "url": "https://www.uniprot.org/uniprotkb/F4IHX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8S8R9", "url": "https://www.uniprot.org/uniprotkb/Q8S8R9", "database": "UniProtKB", 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Computationally mapped isoform of Nucleic acid-binding, OB-fold-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4II37-1" }, "locus": { "chromosome": "2", "start_pos": 17021731, "end_pos": 17022921, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G40780.2", "url": "https://www.ensemblgenomes.org/id/AT2G40780.2" }, { "database": "Ensembl Peptide", "id": "AT2G40780.2", "url": "https://www.ensemblgenomes.org/id/AT2G40780.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy 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"crossref": [ { "id": "F4IIL3", "url": "https://alphafold.ebi.ac.uk/entry/F4IIL3", "database": "AlphaFoldDB", "categories": [] }, { "id": "7922397", "url": "https://www.ncbi.nlm.nih.gov/gene/7922397", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT2G22088", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G22088", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001154527", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154527", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G22088", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G22088", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IIL3", "url": "https://www.uniprot.org/uniprotkb/F4IIL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IIL3-1", "url": "https://www.uniprot.org/uniprotkb/F4IIL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILLEPQTVYRMISDKSDIKQKKKERKKKQYKKKLKRTDFDRNVKKKSPETAFRLKTLAPKPDEWRDGGRSVYKTQCNTKTKKAKRQKECNNIRPHHHQPIEKLTSIKQMALEKTVKPGTVKKRKQNINQQKEK", "length": 134, "header": "tr|F4IIL3-1|F4IIL3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IIL3-1" }, "isoforms": [ { "isoform_ac": "F4IIL3-1", "url": "https://www.uniprot.org/uniprotkb/F4IIL3/entry#F4IIL3-1", "sequence": { "sequence": "MILLEPQTVYRMISDKSDIKQKKKERKKKQYKKKLKRTDFDRNVKKKSPETAFRLKTLAPKPDEWRDGGRSVYKTQCNTKTKKAKRQKECNNIRPHHHQPIEKLTSIKQMALEKTVKPGTVKKRKQNINQQKEK", "length": 134, "header": "tr|F4IIL3-1|F4IIL3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IIL3-1" }, "locus": { "chromosome": "2", "start_pos": 9388384, "end_pos": 9389049, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G22088.1", "url": "https://www.ensemblgenomes.org/id/AT2G22088.1" }, { "database": "Ensembl Peptide", "id": "AT2G22088.1", "url": "https://www.ensemblgenomes.org/id/AT2G22088.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IIL3", "url": "https://www.uniprot.org/uniprotkb/F4IIL3" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IIL3", "url": "https://www.uniprot.org/uniprotkb/F4IIL3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G22088", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G22088", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IIL3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 134, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IIL3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IIL3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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"https://www.ncbi.nlm.nih.gov/protein/NP_180403" }, { "id": "F4IIN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IIN7" } ] }, { "name": "T1B3_12", "type": "synonym", "evidence": [ { "id": "NP_180403", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180403" }, { "id": "F4IIN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IIN7" } ] } ], "protein_names": [ { "name": "SIT4 phosphatase-associated family protein", "type": "synonym", "evidence": [ { "id": "NP_180403", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180403" }, { "id": "F4IIN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IIN7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IIN7", "url": "https://www.uniprot.org/uniprotkb/F4IIN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IIN7", "locus": {} } ], "crossref": [ { "id": "F4IIN7", "url": "https://alphafold.ebi.ac.uk/entry/F4IIN7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G28360", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G28360", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817384", "url": "https://www.ncbi.nlm.nih.gov/gene/817384", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G28360", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G28360", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RIFGHAI", "url": "https://omabrowser.org/oma/group/RIFGHAI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12634:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12634:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_180403", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_180403", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G28360", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G28360", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IIN7", "url": "https://www.uniprot.org/uniprotkb/F4IIN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IIN7-1", "url": "https://www.uniprot.org/uniprotkb/F4IIN7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFWKLASLSASSPVESILDKDSFTLEELLDEEEIIQECKALNSRLINFLREKTQVEKLLRYVVEEPEDDADSKRAFKFPFISCEIFTCEIDVILKTLVEDEKLMDLLFGFLEPNRPHSALLAGYFGKVVICLMIRKTSALMSYIKGHGNVFSQLVDLIGITSIMEVLVRLVGADDHVYPNFPDVMRYLADSDLLEMIVDKLNPSSPPEVQANAAETLCAITRNAPSALATKLSSPGFVSRIFGHAIEDSHSKSGLVHSLTVCISLLDPRRSGASSPFFNSYRGQNMFESPVPVTQETIGAMLPKLGDMLVLLSVTSDSKVLPTTYGELRPPLGKHRLKIVEFIAVLLKSGNEAAGTELAISGTIKRILELFFEYPYNNALHHQVESIILSCLENKSEIMVNHILQDCNLISKILSSDKDSALSGDNLPTVVATGKKPPRVGYVGHITRLWNKLVQLSDSNALIKTSLQENSEWNEWQSSVLKERNTVENVYRWACGRPTTLQDRTRDSDEEDRDYDVAALANNLNQAFNYRIYGNEDNEEDQNALNALDRDDSDSYFDDESAEVVISSLRLGDDQGSLLTNSDWFTFQDDRFSNPTSDTMIEDVNMNETTNANDSSSSDDELLVEEEEDDDLTEKSKNISPSNLSTSDSTSINISSENNDEPSDMQVTSSSLNPFIDVPMLDVKPEPVIPNSSPTSSESSSLGHKSPSSPAVRALFEEDVEFVGVEPEGTEKAMDQALKEGIVGEAGPLKRNIVQKVPENENQAENSGVTEFNDANFWRVDQEVTVLE", "length": 788, "header": "tr|F4IIN7-1|F4IIN7_ARATH Isoform 1 of SIT4 phosphatase-associated family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IIN7-1" }, "isoforms": [ { "isoform_ac": "F4IIN7-1", "url": "https://www.uniprot.org/uniprotkb/F4IIN7/entry#F4IIN7-1", "sequence": { "sequence": "MFWKLASLSASSPVESILDKDSFTLEELLDEEEIIQECKALNSRLINFLREKTQVEKLLRYVVEEPEDDADSKRAFKFPFISCEIFTCEIDVILKTLVEDEKLMDLLFGFLEPNRPHSALLAGYFGKVVICLMIRKTSALMSYIKGHGNVFSQLVDLIGITSIMEVLVRLVGADDHVYPNFPDVMRYLADSDLLEMIVDKLNPSSPPEVQANAAETLCAITRNAPSALATKLSSPGFVSRIFGHAIEDSHSKSGLVHSLTVCISLLDPRRSGASSPFFNSYRGQNMFESPVPVTQETIGAMLPKLGDMLVLLSVTSDSKVLPTTYGELRPPLGKHRLKIVEFIAVLLKSGNEAAGTELAISGTIKRILELFFEYPYNNALHHQVESIILSCLENKSEIMVNHILQDCNLISKILSSDKDSALSGDNLPTVVATGKKPPRVGYVGHITRLWNKLVQLSDSNALIKTSLQENSEWNEWQSSVLKERNTVENVYRWACGRPTTLQDRTRDSDEEDRDYDVAALANNLNQAFNYRIYGNEDNEEDQNALNALDRDDSDSYFDDESAEVVISSLRLGDDQGSLLTNSDWFTFQDDRFSNPTSDTMIEDVNMNETTNANDSSSSDDELLVEEEEDDDLTEKSKNISPSNLSTSDSTSINISSENNDEPSDMQVTSSSLNPFIDVPMLDVKPEPVIPNSSPTSSESSSLGHKSPSSPAVRALFEEDVEFVGVEPEGTEKAMDQALKEGIVGEAGPLKRNIVQKVPENENQAENSGVTEFNDANFWRVDQEVTVLE", "length": 788, "header": "tr|F4IIN7-1|F4IIN7_ARATH Isoform 1 of SIT4 phosphatase-associated family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IIN7-1" }, "locus": { "chromosome": "2", "start_pos": 12124152, "end_pos": 12130092, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G28360.1", "url": "https://www.ensemblgenomes.org/id/AT2G28360.1" }, { "database": "Ensembl Peptide", "id": "AT2G28360.1", "url": "https://www.ensemblgenomes.org/id/AT2G28360.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 323, "end_pos": 323, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IIN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IIN7" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr323" }, { "start_pos": 324, "end_pos": 324, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IIN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IIN7" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr324" }, { "start_pos": 325, "end_pos": 325, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IIN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IIN7" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Tyr325" }, { "start_pos": 356, "end_pos": 356, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IIN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IIN7" } ], "site_lbl": "Thr356" }, { "start_pos": 505, "end_pos": 505, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IIN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IIN7" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr505" }, { "start_pos": 508, "end_pos": 508, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IIN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IIN7" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser508" }, { "start_pos": 706, "end_pos": 706, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IIN7", "url": 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Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IIN7", "url": "https://www.uniprot.org/uniprotkb/F4IIN7" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4IIN7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IIN7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { 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"id": "F4IIU2", "url": "https://alphafold.ebi.ac.uk/entry/F4IIU2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G34670", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G34670", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "818032", "url": "https://www.ncbi.nlm.nih.gov/gene/818032", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G34670", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G34670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WIKLTDC", "url": "https://omabrowser.org/oma/group/WIKLTDC/", "database": "OMA", "categories": [ "Protein 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"PF14291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154499", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154499", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G06541", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G06541", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IJA9", "url": "https://www.uniprot.org/uniprotkb/F4IJA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IJA9-1", "url": "https://www.uniprot.org/uniprotkb/F4IJA9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IJB0", "url": "https://www.uniprot.org/uniprotkb/F4IJB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IJB0-1", "url": "https://www.uniprot.org/uniprotkb/F4IJB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRFNPDWFDLYSGWLEYSVKKDKAYCLGCYLFRDYLENKSGSDTFATKGFDTWKNPQSLREHVGLVNSFHNNALKRADCLMRQGQSIVHAFYKQDDIVKGEYRIRLNASIDCCRYLVRQGLTFRGHDESVDSANRGNFLELVKYTAGQNEVVSKVVLENAPKNNQMVCPKIQRDIVHCFVEEVIRSIIQEVDHDVFCLMVDESADIFDKEQMVVVFRFVDKHATVKERFIGLIHVKETFSAFLKCAIDSLFAKHGLSIKQIRGQDYDGASNMKGEFNGLRYLILRENSSAYYIHCFAHQLQLVVVAVAKKHFEIGDFFDMISVLINVVEASCKRKDRVRDEFRKKLEEGINQVDLFSFIIKMLEWIEDDGTDSTKRRQANVALQRKDQDILNAMSLVKSTKQHLFNLRDDGWDSFLNEVFLLEYNDCFDEVNTELLGCVASLSPTDLFREFDQLKVMRLAEFYPQDFTRVDWRSLEHQLGLYIDNIREDDRFANLKSLGDLARVMIETRKHLSHPQVYRLLKVVLTLPIATATVERCFSATVVKTTLRNRISDQFLNDYVVCLVKRELFDTVINKVVIKRFQSMENRMIAL", "length": 592, "header": "tr|F4IJB0-1|F4IJB0_ARATH Isoform 1 of TTF-type zinc finger protein with HAT dimerization domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IJB0-1" }, "isoforms": [ { "isoform_ac": "F4IJA9-1", "url": "https://www.uniprot.org/uniprotkb/F4IJB0/entry#F4IJA9-1", "sequence": { "sequence": "MRRFNPDWFDLYSGWLEYSVKKDKAYCLGCYLFRDYLENKSGSDTFATKGFDTWKNPQSLREHVGLVNSFHNNALKRADCLMRQGQSIVHAFYKQDDIVKGEYRIRLNASIDCCRYLVRQGLTFRGHDESVDSANRGNFLELVKYTAGQNEVVSKVVLENAPKNNQMVCPKIQRDIVHCFVEEVIRSIIQEVDHDVFCLMVDESADIFDKEQMVVVFRFVDKHATVKERFIGLIHVKETFSAFLKCAIDSLFAKHGLSIKQIRGQDYDGASNMKGEFNGLRYLILRENSSAYYIHCFAHQLQLVVVAVAKKHFEIGDFFDMISVLINVVEASCKRKDRVRDEFRKKLEEGINQVALQRKDQDILNAMSLVKSTKQHLFNLRDDGWDSFLNEVFLLEYNDCFDEVNTELLGCVASLSPTDLFREFDQLKVMRLAEFYPQDFTRVDWRSLEHQLGLYIDNIREDDRFANLKSLGDLARVMIETRKHLSHPQVYRLLKVVLTLPIATATVERCFSATVVKTTLRNRISDQFLNDYVVCLVKRELFDTVINKVVIKRFQSMENRMIAL", "length": 564, "header": "tr|F4IJA9-1|F4IJB0_ARATH Computationally mapped isoform of TTF-type zinc finger protein with HAT dimerization domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IJB0-1" }, "locus": { "chromosome": "2", "start_pos": 2598222, "end_pos": 2600326, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G06541.2", "url": "https://www.ensemblgenomes.org/id/AT2G06541.2" }, { "database": "Ensembl Peptide", "id": "AT2G06541.2", "url": "https://www.ensemblgenomes.org/id/AT2G06541.2" } ] } }, { "isoform_ac": "F4IJB0-1", "url": "https://www.uniprot.org/uniprotkb/F4IJB0/entry#F4IJB0-1", "sequence": { "sequence": "MRRFNPDWFDLYSGWLEYSVKKDKAYCLGCYLFRDYLENKSGSDTFATKGFDTWKNPQSLREHVGLVNSFHNNALKRADCLMRQGQSIVHAFYKQDDIVKGEYRIRLNASIDCCRYLVRQGLTFRGHDESVDSANRGNFLELVKYTAGQNEVVSKVVLENAPKNNQMVCPKIQRDIVHCFVEEVIRSIIQEVDHDVFCLMVDESADIFDKEQMVVVFRFVDKHATVKERFIGLIHVKETFSAFLKCAIDSLFAKHGLSIKQIRGQDYDGASNMKGEFNGLRYLILRENSSAYYIHCFAHQLQLVVVAVAKKHFEIGDFFDMISVLINVVEASCKRKDRVRDEFRKKLEEGINQVDLFSFIIKMLEWIEDDGTDSTKRRQANVALQRKDQDILNAMSLVKSTKQHLFNLRDDGWDSFLNEVFLLEYNDCFDEVNTELLGCVASLSPTDLFREFDQLKVMRLAEFYPQDFTRVDWRSLEHQLGLYIDNIREDDRFANLKSLGDLARVMIETRKHLSHPQVYRLLKVVLTLPIATATVERCFSATVVKTTLRNRISDQFLNDYVVCLVKRELFDTVINKVVIKRFQSMENRMIAL", "length": 592, "header": "tr|F4IJB0-1|F4IJB0_ARATH Isoform 1 of TTF-type zinc finger protein with HAT dimerization domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IJB0-1" }, "locus": { "chromosome": "2", "start_pos": 2598222, "end_pos": 2600326, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G06541.1", "url": "https://www.ensemblgenomes.org/id/AT2G06541.1" }, { "database": "Ensembl Peptide", "id": "AT2G06541.1", "url": "https://www.ensemblgenomes.org/id/AT2G06541.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IJA9", "url": "https://www.uniprot.org/uniprotkb/F4IJA9" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IJA9", "url": "https://www.uniprot.org/uniprotkb/F4IJA9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G06541", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G06541", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F4IJB0", "url": "https://www.uniprot.org/uniprotkb/F4IJB0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IJB0", "url": "https://www.uniprot.org/uniprotkb/F4IJB0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IJB1-1", "uniprot_ac": "F4IJB1", "uniprot_id": "F4IJB1_ARATH", "mass": { "chemical_mass": 17589.0, "monoisotopic_mass": 17589.0 }, "refseq": { "ac": "NP_671788", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_671788" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4IJB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IJB1/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_671788", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_671788" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IJB1", "url": "https://www.uniprot.org/uniprotkb/F4IJB1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IJB1", "locus": {} } ], "crossref": [ { "id": "F4IJB1", "url": "https://alphafold.ebi.ac.uk/entry/F4IJB1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G06555", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G06555", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "815214", "url": "https://www.ncbi.nlm.nih.gov/gene/815214", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"NCHERVV", "url": "https://omabrowser.org/oma/group/NCHERVV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00013", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00013", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G22600", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G22600", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IJK5", "url": "https://www.uniprot.org/uniprotkb/F4IJK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IJK5-1", "url": "https://www.uniprot.org/uniprotkb/F4IJK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNRRGVTTAVSKRRPVIHVLPDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPPICGTKNDELIQITGDVLAVKKALVMVSSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRSSSLSNATEIVASNRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNREAIIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLGEMRARVSNPYESAGGRSQIYNLQPSQQDASRGDSLSVSAAVPDLKMVRSGAEVLKSNSVMHTEVLKEVDELNDFTLPQSLLEEDLTQGMKQLQMSSNGDVSSLPPRSKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTGTEATVLISGNPEQARTAMSLIESILTDQ", "length": 632, "header": "tr|F4IJK5-1|F4IJK5_ARATH Isoform 1 of RNA-binding KH domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IJK5-1" }, "isoforms": [ { "isoform_ac": "F4IJK5-1", "url": "https://www.uniprot.org/uniprotkb/F4IJK5/entry#F4IJK5-1", "sequence": { "sequence": 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"https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IJK5", "url": "https://www.uniprot.org/uniprotkb/F4IJK5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G22600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G22600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F4IJK5", "url": 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] }, { "id": "F4IJY6-1", "url": "https://www.uniprot.org/uniprotkb/F4IJY6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHIMYVRTVRNASRRHQGSRGSTARLGSLEGEKAKKMRRIMRSRGRRRSVAGGGGSGGRNGGRIRRSRERKRRKKKKKKFLRKIQKIYLCNIFFFLIQIIYQII", "length": 104, "header": "tr|F4IJY5-1|F4IJY5_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IJY5-1" }, "isoforms": [ { "isoform_ac": "F4IJY5-1", "url": "https://www.uniprot.org/uniprotkb/F4IJY5/entry#F4IJY5-1", "sequence": { "sequence": "MHIMYVRTVRNASRRHQGSRGSTARLGSLEGEKAKKMRRIMRSRGRRRSVAGGGGSGGRNGGRIRRSRERKRRKKKKKKFLRKIQKIYLCNIFFFLIQIIYQII", "length": 104, "header": "tr|F4IJY5-1|F4IJY5_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IJY5-1" }, "locus": { "chromosome": "2", "start_pos": 17195292, "end_pos": 17195915, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G41231.1", "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR015410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G07240", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G07240", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SNCERID", "url": "https://omabrowser.org/oma/group/SNCERID/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48449", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48449", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48449:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48449:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02902", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02902", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09331", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09331", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G07240", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G07240", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IK98", "url": "https://www.uniprot.org/uniprotkb/F4IK98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IK98-1", "url": "https://www.uniprot.org/uniprotkb/F4IK98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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GN= PE=3 SV=1 CANONICAL=F4IK98-1" }, "isoforms": [ { "isoform_ac": "F4IK98-1", "url": "https://www.uniprot.org/uniprotkb/F4IK98/entry#F4IK98-1", "sequence": { "sequence": "MLKKRVVTDREIRLRYACLALVDGFLLPTSHYPKIIKDHAEMSEDLQGFLSYPWGRLSFEMMMTSIKEREVEQLATTCVAVQGLLYALQLVVLEAVPAIQEGPQIDEVVLSDSDAEAAADVATRPGVALKLGNAKNVDSNCEAHVEPIIFPNARLNPVEDLTWSDDEDGERVDNMTGGKTKVVRGMKAQSNARPATGMRRKNHGPIGEKGESSSGVYFDALSRMIDEKLKAQSEKILKGVIHWFTENLVVDPDNPKADKEAADGDHGPHTDKEVALGDNGLQADKETGGEEQNSNPVSSPESANEYEESDFNPIPPPRQPSSMQTDFTLPSFQGDQAISAVDDVVSFYNSVNVPTDPSGGASNTNKTNKVQSGEEEVGVQPEKNGNQQADVDMVDDLNAGRAHQADVEMVDDINAAMAEQDVNMPSDGVAHPSSSTVSPPKSVTTENTALGPDVAPDPLNPVAPLDPLPSVVVVATSVVAPNPPEESQDFAMFSSQIGSSQPTHPSALPTQALKTASSPITKLNDTPKVDNVSSVGASLIPNLPVTIVQRFFNPPPPSGGKLLAGKDGGGPDGDVNQGRKSKRPRTLSSKLDGRFHFDKKTKLLVGHPSPFLSVGELASDPEVRYQRSLSKIKGKSSISIVGEASLSHKEIFDIIERKKHFSSKVMDVLIKFSRHLLRTDDIDGEKLRVDVLGSKFVSQLTRLFPKFAKTLPPKDFIFPSALVDLLIGAGESNRVRLFAEADCVYMPFNFDKKHWVSLCVDLKAHKITILDSNIQLRRDAALYAELQPLAAMLPYLFRQTSSSSGDISLQPFLLDRPHGIPQVSSPFDSGVLSVFLIHAHAVGGVEECMEFDVVALDVEVKKLVSTIILSGVAS", "length": 874, "header": "tr|F4IK98-1|F4IK98_ARATH Isoform 1 of Cysteine-type peptidase OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4IK98-1" }, "locus": { "chromosome": "2", "start_pos": 3007102, "end_pos": 3012333, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G07240.1", "url": "https://www.ensemblgenomes.org/id/AT2G07240.1" }, { "database": "Ensembl Peptide", "id": "AT2G07240.1", "url": "https://www.ensemblgenomes.org/id/AT2G07240.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IK98", "url": "https://www.uniprot.org/uniprotkb/F4IK98" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IK98", "url": "https://www.uniprot.org/uniprotkb/F4IK98" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G07240", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G07240", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ 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Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "Q9SIV6", "url": "https://www.uniprot.org/uniprotkb/Q9SIV6" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9SIV6", "url": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR44137:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44137:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G35540", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G35540", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IKR5", "url": "https://www.uniprot.org/uniprotkb/F4IKR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IKR5-1", "url": "https://www.uniprot.org/uniprotkb/F4IKR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGSDSEVEKESIHHKALAESSFNCGDLMSALTHARKALSLSPNTEGLSAMVTAFEIISSAATVAGGFPEWYKVLKVEPFSHINTIKQQYRKLALVLHPDKNPYVGCEEGFKLLNEAFRVFSDKVRRTEYDMKLRIRIQGEMVSGGSGGDETSTFSAVCSGCRSVHKFDRKYLGQNLMCPTCKNSFEAKEVEKEEEGRENGACTSKIITYSRRKRPVDSDGESLIKEVETGEMSQEAAEAINVFEGSDEEDEGMMTLAEMQAVIKRNKSKVNSKITEKDSSGEENMGRETQKRSLADASMTETLREMSTNAVNNKQEVLKNRKNIKKKKMANHKDLTEIVDLEYVPRVDRKRDRGKLSQEMYMEDEDFELYDFDKDRMPRSFKKGQIWAIYDGGDDKMPRSYCLVSEVVSLNPFKVWISWLDFESEKLISWMKISSSHMPCGRFRVSEKALIEQVKPFSHLVNCERAAREIYQIYPKKGSVWAVYSETNPGLQRRKTRRYEIVVCLTMYTDAYGLSVAYLEKVNDYSNLFKRRDYGYNAVRWVEKEDVAALLSHQIPAKKLPEDESGADLKESWVLDLASVPPDLVSAT", "length": 590, "header": "tr|F4IKR5-1|F4IKR5_ARATH Isoform 1 of DNAJ heat shock N-terminal domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IKR5-1" }, "isoforms": [ { "isoform_ac": "F4IKR5-1", "url": "https://www.uniprot.org/uniprotkb/F4IKR5/entry#F4IKR5-1", "sequence": { "sequence": "MASGSDSEVEKESIHHKALAESSFNCGDLMSALTHARKALSLSPNTEGLSAMVTAFEIISSAATVAGGFPEWYKVLKVEPFSHINTIKQQYRKLALVLHPDKNPYVGCEEGFKLLNEAFRVFSDKVRRTEYDMKLRIRIQGEMVSGGSGGDETSTFSAVCSGCRSVHKFDRKYLGQNLMCPTCKNSFEAKEVEKEEEGRENGACTSKIITYSRRKRPVDSDGESLIKEVETGEMSQEAAEAINVFEGSDEEDEGMMTLAEMQAVIKRNKSKVNSKITEKDSSGEENMGRETQKRSLADASMTETLREMSTNAVNNKQEVLKNRKNIKKKKMANHKDLTEIVDLEYVPRVDRKRDRGKLSQEMYMEDEDFELYDFDKDRMPRSFKKGQIWAIYDGGDDKMPRSYCLVSEVVSLNPFKVWISWLDFESEKLISWMKISSSHMPCGRFRVSEKALIEQVKPFSHLVNCERAAREIYQIYPKKGSVWAVYSETNPGLQRRKTRRYEIVVCLTMYTDAYGLSVAYLEKVNDYSNLFKRRDYGYNAVRWVEKEDVAALLSHQIPAKKLPEDESGADLKESWVLDLASVPPDLVSAT", "length": 590, "header": "tr|F4IKR5-1|F4IKR5_ARATH Isoform 1 of DNAJ heat shock N-terminal domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IKR5-1" }, "locus": { "chromosome": "2", "start_pos": 14927071, "end_pos": 14929134, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G35540.1", "url": "https://www.ensemblgenomes.org/id/AT2G35540.1" }, { "database": "Ensembl Peptide", "id": "AT2G35540.1", "url": "https://www.ensemblgenomes.org/id/AT2G35540.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IKR5", "url": "https://www.uniprot.org/uniprotkb/F4IKR5" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IKR5", "url": "https://www.uniprot.org/uniprotkb/F4IKR5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G35540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G35540", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IKR5", "url": "https://www.uniprot.org/uniprotkb/F4IKR5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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"https://www.ncbi.nlm.nih.gov/protein/NP_001031489" } ] }, { "name": "T20F21.15", "type": "synonym", "evidence": [ { "id": "NP_001031489", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001031489" }, { "id": "F4IKT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IKT4" } ] }, { "name": "T20F21_15", "type": "synonym", "evidence": [ { "id": "NP_001031489", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001031489" }, { "id": "F4IKT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IKT4" } ] } ], "protein_names": [ { "name": "FAD/NAD(P)-binding oxidoreductase family protein", "type": "synonym", "evidence": [ { "id": "NP_001031489", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001031489" }, { "id": "F4IKT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IKT4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IKT4", "url": "https://www.uniprot.org/uniprotkb/F4IKT4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "CTF2A", "url": "https://www.uniprot.org/uniprotkb/F4IKT4", "locus": { "chromosome": "CP002685.1", "start_pos": 14990426, "end_pos": 14988437, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "AT2G35660", "url": "https://www.ensemblgenomes.org/id/AT2G35660" } ] } } ], "crossref": [ { "id": "AT2G35660", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G35660", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "818135", "url": "https://www.ncbi.nlm.nih.gov/gene/818135", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G35660", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G35660", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LDRPTSW", "url": "https://omabrowser.org/oma/group/LDRPTSW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45934", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45934", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45934:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45934:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01494", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01494", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001031489", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001031489", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G35660", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G35660", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IKT4", "url": "https://www.uniprot.org/uniprotkb/F4IKT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IKT4-1", "url": "https://www.uniprot.org/uniprotkb/F4IKT4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9ZQN9", "url": "https://www.uniprot.org/uniprotkb/Q9ZQN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9ZQN9-1", "url": "https://www.uniprot.org/uniprotkb/Q9ZQN9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVKKEDGRELRSFKFKDDDQSQEVRAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGTRLLAQIVIGCDGIRSKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGIRAGYVPVSTTKVYWFICFNSPSLGPKITDPAILKKQAKELVSTWPEDLQNLIDLTPDETISRTPLVDRWLWPGIAPPASKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINGGTESIEVAMESYGSERWSRAFPLTVRANLVGALLQWENPLVCSIRNNIVIPKLLRLGPMLEHTNFECEPLFVSKS", "length": 325, "header": "tr|F4IKT4-1|F4IKT4_ARATH Isoform 1 of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN=CTF2A PE=1 SV=1 CANONICAL=F4IKT4-1" }, "isoforms": [ { "isoform_ac": "F4IKT4-1", "url": "https://www.uniprot.org/uniprotkb/F4IKT4/entry#F4IKT4-1", "sequence": { "sequence": "MVVKKEDGRELRSFKFKDDDQSQEVRAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGTRLLAQIVIGCDGIRSKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGIRAGYVPVSTTKVYWFICFNSPSLGPKITDPAILKKQAKELVSTWPEDLQNLIDLTPDETISRTPLVDRWLWPGIAPPASKGRVVLVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINGGTESIEVAMESYGSERWSRAFPLTVRANLVGALLQWENPLVCSIRNNIVIPKLLRLGPMLEHTNFECEPLFVSKS", "length": 325, "header": "tr|F4IKT4-1|F4IKT4_ARATH Isoform 1 of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN=CTF2A PE=1 SV=1 CANONICAL=F4IKT4-1" }, "locus": { "chromosome": "2", "start_pos": 14988480, "end_pos": 14990410, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G35660.3", "url": "https://www.ensemblgenomes.org/id/AT2G35660.3" }, { "database": "Ensembl Peptide", "id": "AT2G35660.3", "url": "https://www.ensemblgenomes.org/id/AT2G35660.3" } ] } }, { "isoform_ac": "Q9ZQN9-1", "url": "https://www.uniprot.org/uniprotkb/F4IKT4/entry#Q9ZQN9-1", "sequence": { "sequence": 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"id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G07360", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G07360", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EDDVWEN", "url": "https://omabrowser.org/oma/group/EDDVWEN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48151", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48151", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48151:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48151:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001189515", "url": 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"MAESSGTTLMDLISADPTPVPAQSTSSSASSTASQPTSASASSSSHLHHPMSTKTTLGEKKSKRATLMQIQNDTISVAKAALNPVKANIMPQRQRQKKKPVSYSQLARSIHELAATLDQKSSQKQLVNHVFPKLAVYNSVDPSLAPSLLMLNQQCEDRNVLRYVYYYLARILSDTGMTPGGGIPTPNWDALADIDAGGGVTRADVVPRIVNQLTNEATNSEFEFHARRLQALKALTYSPSGNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDKESIMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAMTLEKLASPTGALQDILHMNDVLARVSLARLCHSISRARALDERPDIRSQFNSILYQLLLDPSERVCYEAILCILGKHDNTERHEMDERAAGWYRLTREILKLPEAPSLSSKDKSNKTKRPQPLIKLVMRRLESSFRSFSRPVLHAAARVVQEMGKSRAAAFAMGLQDIDESVHVNAFSDALDDAETNESSHPEGIRRTSSISAGPGRSDTIASLLAALMEVVRTTVACECVYVRAMVIKALIWMQSPDESLDELKSIIASELSDPGWPAALVNDVLLTLHARFKATPDMAVILLEIARIFATKVPGKIDADVLQLLWKTCLVGAGPDGKHTALEAVTIVLDLPPPQPGSMAGLTSIDRVSASDPKSALALQKLVQAAVWFLGENANYAASEYAWESATPPGTALMMLDADKMVAAASSRNPTLAGALTRLQRCAFSGSWEVRIVAIQALTTIAIRSGEPFRLQIYEFLYTLAEGGVQSQLSEMHLSNGEDQGASGTGLGVLITPMLKVLDEMYVGQDELIKDIRHHDNANKEWKDEELKKLYENHERLLDFVSMFCFIPRAKYLPLGPISAKLIDTYRTKHNITASTGSTDPAVVATGISDLIYESTQPAPAASNSSGLDDDLVNAWAANLGDDGLLGNNAPAMSRVNEFIAGVGTDAPDVEEENVFSRPSVGYDDMWAKTLLETSELEEEDARSGSSSPDSAGSVESSISSHFGGMNYPSLFSSKPSSQATAKSGGSKYQSTYEGYGSPIREEPPPPYSYSEPQSRESFENPVAGSGSRSYESDDEEPRKSTGTRFGTALYDFTAGGDDELNLTAEEELEIEYEVDGWFYVKKKRPGRDGKMAGLVPVLYVNQS", "length": 1198, "header": "tr|F4IL68-1|F4IL68_ARATH Isoform 1 of SH3 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TASH3 PE=1 SV=1 CANONICAL=F4IL68-1" }, "isoforms": [ { "isoform_ac": "F4IL68-1", "url": "https://www.uniprot.org/uniprotkb/F4IL68/entry#F4IL68-1", "sequence": { "sequence": "MAESSGTTLMDLISADPTPVPAQSTSSSASSTASQPTSASASSSSHLHHPMSTKTTLGEKKSKRATLMQIQNDTISVAKAALNPVKANIMPQRQRQKKKPVSYSQLARSIHELAATLDQKSSQKQLVNHVFPKLAVYNSVDPSLAPSLLMLNQQCEDRNVLRYVYYYLARILSDTGMTPGGGIPTPNWDALADIDAGGGVTRADVVPRIVNQLTNEATNSEFEFHARRLQALKALTYSPSGNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDKESIMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAMTLEKLASPTGALQDILHMNDVLARVSLARLCHSISRARALDERPDIRSQFNSILYQLLLDPSERVCYEAILCILGKHDNTERHEMDERAAGWYRLTREILKLPEAPSLSSKDKSNKTKRPQPLIKLVMRRLESSFRSFSRPVLHAAARVVQEMGKSRAAAFAMGLQDIDESVHVNAFSDALDDAETNESSHPEGIRRTSSISAGPGRSDTIASLLAALMEVVRTTVACECVYVRAMVIKALIWMQSPDESLDELKSIIASELSDPGWPAALVNDVLLTLHARFKATPDMAVILLEIARIFATKVPGKIDADVLQLLWKTCLVGAGPDGKHTALEAVTIVLDLPPPQPGSMAGLTSIDRVSASDPKSALALQKLVQAAVWFLGENANYAASEYAWESATPPGTALMMLDADKMVAAASSRNPTLAGALTRLQRCAFSGSWEVRIVAIQALTTIAIRSGEPFRLQIYEFLYTLAEGGVQSQLSEMHLSNGEDQGASGTGLGVLITPMLKVLDEMYVGQDELIKDIRHHDNANKEWKDEELKKLYENHERLLDFVSMFCFIPRAKYLPLGPISAKLIDTYRTKHNITASTGSTDPAVVATGISDLIYESTQPAPAASNSSGLDDDLVNAWAANLGDDGLLGNNAPAMSRVNEFIAGVGTDAPDVEEENVFSRPSVGYDDMWAKTLLETSELEEEDARSGSSSPDSAGSVESSISSHFGGMNYPSLFSSKPSSQATAKSGGSKYQSTYEGYGSPIREEPPPPYSYSEPQSRESFENPVAGSGSRSYESDDEEPRKSTGTRFGTALYDFTAGGDDELNLTAEEELEIEYEVDGWFYVKKKRPGRDGKMAGLVPVLYVNQS", "length": 1198, "header": "tr|F4IL68-1|F4IL68_ARATH Isoform 1 of SH3 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=TASH3 PE=1 SV=1 CANONICAL=F4IL68-1" }, "locus": { "chromosome": "2", "start_pos": 3047252, "end_pos": 3057196, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G07360.2", "url": "https://www.ensemblgenomes.org/id/AT2G07360.2" }, { "database": "Ensembl Peptide", "id": "AT2G07360.2", "url": "https://www.ensemblgenomes.org/id/AT2G07360.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 18, "start_aa": "Thr", "end_pos": 18, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr18", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IL68", "url": "https://www.uniprot.org/uniprotkb/F4IL68" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "F4IL68", "url": "https://www.uniprot.org/uniprotkb/F4IL68" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "F4IL68", "url": "https://www.uniprot.org/uniprotkb/F4IL68" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IL68", "url": "https://www.uniprot.org/uniprotkb/F4IL68" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G07360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G07360", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4IL68", "url": "https://www.uniprot.org/uniprotkb/F4IL68" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4IL68", "url": "https://www.uniprot.org/uniprotkb/F4IL68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1156, "end_pos": 1158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1196, "end_pos": 1198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 530, "end_pos": 532, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" }, { "start_pos": 925, "end_pos": 927, "annotation": "n_glycosylation_sequon" }, { "start_pos": 958, "end_pos": 960, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"uniprot_ac": "F4IL89", "uniprot_id": "F4IL89_ARATH", "mass": { "chemical_mass": 14002.0, "monoisotopic_mass": 14002.0 }, "refseq": {}, "gene_names": [ { "name": "T17H1.5", "type": "synonym", "evidence": [ { "id": "F4IL89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IL89" } ] }, { "name": "T17H1_5", "type": "synonym", "evidence": [ { "id": "F4IL89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IL89" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4IL89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IL89/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IL89", "url": "https://www.uniprot.org/uniprotkb/F4IL89" } ], "common_name": "Mouse-ear cress", 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"MRPGRARALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSPGLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSLKAKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDLTREERSNGKAIRPFGSSRSIAHIQISYLIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSETWDLGLATNEYFSSSFLRQRLM", "length": 389, "header": "tr|F4IMC7-1|F4IMC7_ARATH Isoform 1 of 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMC7-1" }, "locus": { "chromosome": "2", "start_pos": 3410597, "end_pos": 3413161, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G07715.1", "url": "https://www.ensemblgenomes.org/id/AT2G07715.1" }, { "database": "Ensembl Peptide", "id": "AT2G07715.1", "url": "https://www.ensemblgenomes.org/id/AT2G07715.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 253, "end_pos": 253, 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"F4IMC7", "url": "https://www.uniprot.org/uniprotkb/F4IMC7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial translation", "id": "GO:0032543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032543", "evidence": [ { "database": "UniProtKB", "id": "F4IMC7", "url": "https://www.uniprot.org/uniprotkb/F4IMC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IMC7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 389, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IMC7-F1.pdb", "url_external": 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"table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IMD2-1", "uniprot_ac": "F4IMD2", "uniprot_id": "F4IMD2_ARATH", "mass": { "chemical_mass": 31425.0, "monoisotopic_mass": 31425.0 }, "refseq": { "ac": "NP_001118286", "name": "LOW protein: cytochrome C biogenesis ccmF-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118286" }, "gene_names": [], "protein_names": [ { "name": "LOW protein: cytochrome C biogenesis ccmF-like protein", "type": "synonym", "evidence": [ { "id": "NP_001118286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118286" }, { "id": "F4IMD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IMD2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, 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Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IMF6", "url": "https://www.uniprot.org/uniprotkb/F4IMF6" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IMF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMF6" } ], "reference": [ { "type": 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Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4IMJ8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMJ8" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4IMJ8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMJ8" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "F4IMJ8", "url": "https://www.uniprot.org/uniprotkb/F4IMJ8" }, { "database": "iPTMnet", "id": "F4IMJ8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMJ8" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4IMJ8", "url": 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"AT2G36360", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G36360", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IMW1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMW1-1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMW2", "url": "https://www.uniprot.org/uniprotkb/F4IMW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMW2-1", "url": "https://www.uniprot.org/uniprotkb/F4IMW2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMW3", "url": "https://www.uniprot.org/uniprotkb/F4IMW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMW3-1", "url": "https://www.uniprot.org/uniprotkb/F4IMW3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHHWVQASSSDFSGTPPQARSGHTAVNVGKSMVVVFGGLVDKKFLSDIIVYDIENKLWFEPECTGSESEGQVGPTPRAFHVAITIDCHMFIFGGRSGGKRLGDFWVLDTDIWQWSELTSFGDLPTPRDFAAAAAIGSQKIVLCGGWDGKKWLSDVYVMDTMSLEWLELSVSGSLPPPRCGHTATMVEKRLLVFGGRGGGGPIMGDLWALKGLIDEERETPGWTQLKLPGQAPSSRCGHTVTSGGHYLLLFGGHGTGGWLSRYDVYYNDTIILDRVTAQWKRLPIGNEPPPPRAYHTMTCIGARHLLIGGFDGKLTFGDLWWLVPEDDPIAKRSSVPQVVNPPEIKESERELDKLRVWSRQERGQDGFSIVDLQQKMGISVSSGLRLQIPEESEDQEFVELGTRLIEGDVVDERASMIQMAAQALRQHWKQSTPRTLQLKELGSLLRDYQRLVTRIFTTQSSLTSADFGLPGTKTFTFYHIKSSSELRINDISKLLEEYKTLVI", "length": 503, "header": "tr|F4IMW1-1|F4IMW1_ARATH Isoform 1 of Galactose oxidase/kelch repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMW1-1" }, "isoforms": [ { "isoform_ac": "F4IMW1-1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1/entry#F4IMW1-1", "sequence": { "sequence": "MHHWVQASSSDFSGTPPQARSGHTAVNVGKSMVVVFGGLVDKKFLSDIIVYDIENKLWFEPECTGSESEGQVGPTPRAFHVAITIDCHMFIFGGRSGGKRLGDFWVLDTDIWQWSELTSFGDLPTPRDFAAAAAIGSQKIVLCGGWDGKKWLSDVYVMDTMSLEWLELSVSGSLPPPRCGHTATMVEKRLLVFGGRGGGGPIMGDLWALKGLIDEERETPGWTQLKLPGQAPSSRCGHTVTSGGHYLLLFGGHGTGGWLSRYDVYYNDTIILDRVTAQWKRLPIGNEPPPPRAYHTMTCIGARHLLIGGFDGKLTFGDLWWLVPEDDPIAKRSSVPQVVNPPEIKESERELDKLRVWSRQERGQDGFSIVDLQQKMGISVSSGLRLQIPEESEDQEFVELGTRLIEGDVVDERASMIQMAAQALRQHWKQSTPRTLQLKELGSLLRDYQRLVTRIFTTQSSLTSADFGLPGTKTFTFYHIKSSSELRINDISKLLEEYKTLVI", "length": 503, "header": "tr|F4IMW1-1|F4IMW1_ARATH Isoform 1 of Galactose oxidase/kelch repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMW1-1" }, "locus": { "chromosome": "2", "start_pos": 15243413, "end_pos": 15247695, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G36360.3", "url": "https://www.ensemblgenomes.org/id/AT2G36360.3" }, { "database": "Ensembl Peptide", "id": "AT2G36360.3", "url": "https://www.ensemblgenomes.org/id/AT2G36360.3" } ] } }, { "isoform_ac": "F4IMW2-1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1/entry#F4IMW2-1", "sequence": { "sequence": "MHHWVQASSSDFSGTPPQARSGHTAVNVGKSMVVVFGGLVDKKFLSDIIVYDIENKLWFEPECTGSESEGQVGPTPRAFHVAITIDCHMFIFGGRSGGKRLGDFWVLDTGTYMLTFAADIWQWSELTSFGDLPTPRDFAAAAAIGSQKIVLCGGWDGKKWLSDVYVMDTMSLEWLELSVSGSLPPPRCGHTATMVEKRLLVFGGRGGGGPIMGDLWALKGLIDEERETPGWTQLKLPGQAPSSRCGHTVTSGGHYLLLFGGHGTGGWLSRYDVYYNDTIILDRVTAQWKRLPIGNEPPPPRAYHTMTCIGARHLLIGGFDGKLTFGDLWWLVPEDDPIAKRSSVPQVVNPPEIKESERELDKLRVWSRQERGQDGFSIVDLQQKMGISVSSGLRLQIPEESEDQEFVELGTRLIEGDVVDERASMIQMAAQALRQHWKQSTPRTLQLKELGSLLRDYQRLVTRIFTTQSSLTSADFGLPGTKTFTFYHIKSSSELRINDISKLLEEYKTLVI", "length": 512, "header": "tr|F4IMW2-1|F4IMW2_ARATH Computationally mapped isoform of Galactose oxidase/kelch repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IMW1-1" }, "locus": { "chromosome": "2", "start_pos": 15243413, "end_pos": 15247627, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G36360.5", "url": "https://www.ensemblgenomes.org/id/AT2G36360.5" }, { "database": "Ensembl Peptide", "id": "AT2G36360.5", "url": "https://www.ensemblgenomes.org/id/AT2G36360.5" } ] } }, { "isoform_ac": "F4IMW3-1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1/entry#F4IMW3-1", "sequence": { "sequence": "MHHWVQASSSDFSGTPPQARSGHTAVNVGKSMVVVFGGLVDKKFLSDIIVYDIENKLWFEPECTGSESEGQVGPTPRAFHVAITIDCHMFIFGGRSGGKRLGDFWVLDTDIWQWSELTSFGDLPTPRDFAAAAAIGSQKIVLCGGWDGKKWLSDVYVMDTMSLEWLELSVSGSLPPPRCGHTATMVEKRLLVFGGRGGGGPIMGDLWALKGLIDEERETPGWTQLKLPGQAPSSRCGHTVTSGGHYLLLFGGHGTGGWLSRYDVYYNDTIILDRVTAQWKRLPIGNEPPPPRAYHTMTCIGARHLLIGGFDGKLTFGDLWWLVPEDDPIAKRSSVPQVVNPPEIKESERELDKERGQDGFSIVDLQQKMGISVSSGLRLQIPEESEDQEFVELGTRLIEGDVVDERASMIQMAAQALRQHWKQSTPRTLQLKELGSLLRDYQRLVTRIFTTQSSLTSADFGLPGTKTFTFYHIKSSSEVILHDFLLLLPLLNICNQLIYVLHHRKDPCTDFTLNYVAV", "length": 518, "header": "tr|F4IMW3-1|F4IMW3_ARATH Computationally mapped isoform of Galactose oxidase/kelch repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IMW1-1" }, "locus": { "chromosome": "2", "start_pos": 15243744, "end_pos": 15247627, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G36360.4", "url": "https://www.ensemblgenomes.org/id/AT2G36360.4" }, { "database": "Ensembl Peptide", "id": "AT2G36360.4", "url": "https://www.ensemblgenomes.org/id/AT2G36360.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 75, "start_aa": "Thr", "end_pos": 75, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr75", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IMW1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IMW1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G36360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G36360", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IMW1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IMW1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F4IMW1", "url": "https://www.uniprot.org/uniprotkb/F4IMW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IMW1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 503, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IMW1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IMW1" } ], "lectin_list": [], "domain_list": [], 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] }, { "id": "IPR045154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G36480", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G36480", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NGFNIKH", "url": "https://omabrowser.org/oma/group/NGFNIKH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15921", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15921", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15921:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15921:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23228", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23228", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G36480", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G36480", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IMY0", "url": "https://www.uniprot.org/uniprotkb/F4IMY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IMY0-1", "url": "https://www.uniprot.org/uniprotkb/F4IMY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"tr|F4IMY0-1|F4IMY0_ARATH Isoform 1 of Pre-mRNA cleavage complex 2 Pcf11-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IMY0-1" }, "isoforms": [ { "isoform_ac": "F4IMY0-1", "url": "https://www.uniprot.org/uniprotkb/F4IMY0/entry#F4IMY0-1", "sequence": { "sequence": "MENPRRPFDRSRDPGPMKKPRLSEESIRPVNSNARQFLSQRTLGTATAVTVPPASSRFRVSGRETESSIVSDPSREAYQPQPVHPHYELVNQYKSALAELTFNSKPIITNLTIIAGENVHAAKAVVTAICNNILEVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVDPPMHSNMRHLFGTWKGVFHPQTLQLIEKELGFNAKSDGSAAVVSTARAEPQSQRPPHSIHVNPKYLERQRLQQSGRTKGMVTDVPETAPNLTRDSDRLERVSSIASGGSWVGPAKVNNIRRPQRDLLSEPLYEKDIESIAGEYDYASDLPHNSRSVIKNVGSRITDDGCEKQWYGATNRDPDLISDQRDGLHSKSRTSNYATARVENLESSGPSRNIGVPYDSWKNSEEEEFMWDMHSRLSETDVATINPKNELHAPDESERLESENHLLKRPRFSALDPRFDPANSTNSYSSEQKDPSSIGHWAFSSTNATSTATRKGIQPQPRVASSGILPSSGSGSDRQSPLHDSTSKQNVTKQDVRRAHSLPQRDPRASRFPAKQNVPRDDSVRLPSSSSQFKNTNMRELPVEIFDSKSAAENAPGLTLASEATGQPNMSDLLEAVMKSGILSNNSTCGAIKEESHDEVNPGALTLPAASKPKTLPISLATDNLLARLKVEQSSAPLVSCAASLTGITSVQTSKEKSKASDPLSCLLSSLVSKGLISASKTELPSAPSITQEHSPDHSTNSSMSVSVVPADAQPSVLVKGPSTAPKVKGLAAPSETSKSEPKDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHMELHDKKKLELSGTNSKCRVWFPKVDNWIAAKAGELEPEYEEVLSEPESAIEDCQAVAADETQCACILCGEVFEDYFSQEMAQWMFKGASYLTNPPANSEASGPIVHTGCLTTSSLQSLEVGIAIKQEIVE", "length": 963, "header": "tr|F4IMY0-1|F4IMY0_ARATH Isoform 1 of Pre-mRNA cleavage complex 2 Pcf11-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IMY0-1" }, "locus": { "chromosome": "2", "start_pos": 15302867, "end_pos": 15307809, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G36480.1", "url": "https://www.ensemblgenomes.org/id/AT2G36480.1" }, { "database": "Ensembl Peptide", "id": "AT2G36480.1", "url": "https://www.ensemblgenomes.org/id/AT2G36480.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4IMY0", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F4IMY0" } ] } ], "phosphorylation": [ { "start_pos": 341, "end_pos": 341, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" } ], "site_lbl": "Ser341" }, { "start_pos": 513, "end_pos": 513, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser513" }, { "start_pos": 516, "end_pos": 516, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser516" }, { "start_pos": 522, "end_pos": 522, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser522" }, { "start_pos": 527, "end_pos": 527, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser527" }, { "start_pos": 528, "end_pos": 528, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr528" }, { "start_pos": 529, "end_pos": 529, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser529" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_reported_with_glycan" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IMY0", "url": "https://www.uniprot.org/uniprotkb/F4IMY0" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IMY0", "url": "https://www.uniprot.org/uniprotkb/F4IMY0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "F4IMY0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F4IMY0" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4IMY0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IMY0" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT2G36480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G36480", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular 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"MMEIDLQKTFTWKIENFSGRKFPITSTVFSSGGCECYVLIRPKGDGFEDYLSLYLCVGNPKSLQPGWKRRASLHFIVLNQSGKEVHRTSERYGLFGPEIPGWGFRTALPLTKLQDRELLENNTLFIEVYIKVTEVVHEGDETRKDMLDFKGFNVLSSQIASVSPIFAKYPKFADDIKPTSKAVKTVYLKILLGLIKTVNKPPEIFSETELIKAYSSLIDLMEVGFRVKWLKSKLDEISLARKKKVDADAARVQELEGKVKNQVELDKEKTKSHVEPKMLSFKDYASPVSPWIPRRKRSD", "length": 299, "header": "sp|F4IN32-1|MCC06_ARATH Isoform 1 of MATH domain and coiled-coil domain-containing protein At2g42460 OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=F4IN32-1" }, "isoforms": [ { "isoform_ac": "F4IN32-1", "url": "https://www.uniprot.org/uniprotkb/F4IN32/entry#F4IN32-1", "sequence": { "sequence": "MMEIDLQKTFTWKIENFSGRKFPITSTVFSSGGCECYVLIRPKGDGFEDYLSLYLCVGNPKSLQPGWKRRASLHFIVLNQSGKEVHRTSERYGLFGPEIPGWGFRTALPLTKLQDRELLENNTLFIEVYIKVTEVVHEGDETRKDMLDFKGFNVLSSQIASVSPIFAKYPKFADDIKPTSKAVKTVYLKILLGLIKTVNKPPEIFSETELIKAYSSLIDLMEVGFRVKWLKSKLDEISLARKKKVDADAARVQELEGKVKNQVELDKEKTKSHVEPKMLSFKDYASPVSPWIPRRKRSD", "length": 299, "header": "sp|F4IN32-1|MCC06_ARATH Isoform 1 of 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}, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IN32", "url": "https://www.uniprot.org/uniprotkb/F4IN32" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G42460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G42460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4IN32", "url": "https://www.uniprot.org/uniprotkb/F4IN32" } ], "pmid": "" } ] } ] }, 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G48080", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G48080", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MVFGHRL", "url": "https://omabrowser.org/oma/group/MVFGHRL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31447", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31447", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31447:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31447:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27981", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27981", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_182329", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_182329", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G48080", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G48080", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IN63", "url": "https://www.uniprot.org/uniprotkb/F4IN63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IN63-1", "url": "https://www.uniprot.org/uniprotkb/F4IN63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAETPASPPLHPPVVLLSDSAAKDAMLTWFRGEFAAANAIIDALCAHLMQASGGSAQYESVMAALHRRRLNWIPVLQMQKYHSISQVTLQLQQHLAKGFHHHLDDDHDDDSPSSDITDGGSREEETLSICCKHEDECESRGASLLKQSKRFSAKEHVRGHTANVVKGLKLYQDVFTRPQLSKLLDSINQLREAGRNHQLSGETFVLFNKNTKGTKRELLQLGVPIFGNTTDEHSVEPIPTLVQSVIDHLLQWRLIPEYKRPNGCVINFFDEDEHSQPFQKPPHVDQPISTLVLSESTMVFGHRLGVDNDGNFRGSLTLPLKEGSLLVMRGNSADMARHVMCPSPNKRVAITFFKLKPDSGKVQPPPTLWRPGTPSPLVMLAPAPKRLDAGTGVFLPWTPPVSRKPAKHLPPRVQRLRLLSSSKSVADSESSSPEIGVS", "length": 438, "header": "tr|F4IN63-1|F4IN63_ARATH Isoform 1 of Oxidoreductase, 2OG-Fe(II) oxygenase family 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Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4INE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4INE2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4INE2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4INE2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", 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"length": 1218, "header": "tr|F4ING4-1|F4ING4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ING4-1" }, "isoforms": [ { "isoform_ac": "F4ING4-1", "url": "https://www.uniprot.org/uniprotkb/F4ING4/entry#F4ING4-1", "sequence": { "sequence": 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"length": 1218, "header": "tr|F4ING4-1|F4ING4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ING4-1" }, "locus": { "chromosome": "2", "start_pos": 3618058, "end_pos": 3626460, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G08986.1", "url": "https://www.ensemblgenomes.org/id/AT2G08986.1" }, { "database": "Ensembl Peptide", "id": "AT2G08986.1", "url": "https://www.ensemblgenomes.org/id/AT2G08986.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1097, "end_pos": 1097, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ING4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ING4" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr1097" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4ING4", "url": "https://www.uniprot.org/uniprotkb/F4ING4" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4ING4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ING4" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4ING4", "url": "https://www.uniprot.org/uniprotkb/F4ING4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G08986", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G08986", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 1097 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": 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} ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4ING5-1", "uniprot_ac": "F4ING5", "uniprot_id": "F4ING5_ARATH", "mass": { "chemical_mass": 17061.0, "monoisotopic_mass": 17061.0 }, "refseq": { "ac": "NP_849948", "name": "uncharacterized protein", "summary": "", "url": 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Peptide", "id": "AT2G09388.1", "url": "https://www.ensemblgenomes.org/id/AT2G09388.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4ING5", "url": "https://www.uniprot.org/uniprotkb/F4ING5" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a 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"MEGNESSTSEGPMFNELKNVMGFSKAWNFKDMLMVGRLCLLSMAIHGIHHGSRIPLPSAIRVLDLVGFEKYPWGLVAFESLIRSVKIVDFDKEGSYVIYGCVHALLIWVYESIHGLAETFGMRRPTLTGVPLLDWRSTRKNMYLQWSDAEEDKDVKLDNLIKDIIHNLLALDAWKDVQVFCIAKSKTKAIVASESITIKGKQVMEAESSKVENKKQKIVSEDKEVDKDEKNSFADILKVMKTLNETISDVGKNLSCKIDAMQTRFESQIVAFEIELKELKESSKVEEKPSSVDGLPIQRVVNKPKTVQKKIKVEGEVYNKKKAVGNGASRGVVKDDKKKLVLKQSKVPTLKGFKKPKKTTSNDDVQDVTDQVVAENLKMVSSSEDTFSDPQQQRNSKALSATLTAFVDKINQIDGDGITTHIAVALTMFRKRMMCDPSMYPNQQITFLDQDMIIPLSNSYSSPHMTTDKEMVEQSMFLMLMIPAMLSAVIPIQIRKKSFAKLEVKRITKKVLENKDLEIFDEVRDLAGPGKLDPRGKEFKIPHMEDS", "length": 547, "header": "tr|F4IPG3-1|F4IPG3_ARATH Isoform 1 of Ulp1 protease family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IPG3-1" }, "isoforms": [ { "isoform_ac": "F4IPG2-1", "url": "https://www.uniprot.org/uniprotkb/F4IPG3/entry#F4IPG2-1", "sequence": { "sequence": 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"database": "Ensembl Transcript", "id": "AT2G10260.1", "url": "https://www.ensemblgenomes.org/id/AT2G10260.1" }, { "database": "Ensembl Peptide", "id": "AT2G10260.1", "url": "https://www.ensemblgenomes.org/id/AT2G10260.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IPG2", "url": "https://www.uniprot.org/uniprotkb/F4IPG2" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IPG2", "url": "https://www.uniprot.org/uniprotkb/F4IPG2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G10260", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G10260", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F4IPG3", "url": "https://www.uniprot.org/uniprotkb/F4IPG3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "F4IPG3", "url": "https://www.uniprot.org/uniprotkb/F4IPG3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IPG3", "url": "https://www.uniprot.org/uniprotkb/F4IPG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": 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"MHPIFDAILQNDLPAFLGLVEARESSLEERSEEQNTNNTVLHVAAKLGHRELVAKIIELRPSLLSSRNAYGDTPLHLAALLGDVNIVMQMLDTGLELYSARNNKNQTPLHLAFVSIFMEAAKFIVEKTNSVDLDELNFALSSGSTCIVGIILERFPELARKNAWEVEDGSRSTLLHYACDKGDLELTSILLGLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVRTPSKETVFHLAARNKNTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIAASVSCGSPLIRYIVGKKIIDIRDRNNMGYRAYHLLPRQAQDYEFISSYLRCDTKTSEEVDSKKAERNEPHIGHSEVIRLLKLIEISTSEIAERKKSKKHHVKRGHKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGGINPPGGVYQDGPWKGKSLVGNTAAFKVFAICNNIALFTSLCIVILLVSIIPYQRKPLKKLLVATHRMMWVSVGFMATAYVAASLVTIPHFPGTRWLFPVIISVAGGSLTVLFSYLGVETISHWFKKMNRVGRGLPIYFIKNNRVEDIPAIAKNEGEMPSLARTNSDLAASEGSGYFTY", "length": 601, "header": "tr|F4IPR3-1|F4IPR3_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPR3-1" }, "isoforms": [ { "isoform_ac": "F4IPR3-1", "url": "https://www.uniprot.org/uniprotkb/F4IPR3/entry#F4IPR3-1", "sequence": { "sequence": "MHPIFDAILQNDLPAFLGLVEARESSLEERSEEQNTNNTVLHVAAKLGHRELVAKIIELRPSLLSSRNAYGDTPLHLAALLGDVNIVMQMLDTGLELYSARNNKNQTPLHLAFVSIFMEAAKFIVEKTNSVDLDELNFALSSGSTCIVGIILERFPELARKNAWEVEDGSRSTLLHYACDKGDLELTSILLGLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVRTPSKETVFHLAARNKNTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIAASVSCGSPLIRYIVGKKIIDIRDRNNMGYRAYHLLPRQAQDYEFISSYLRCDTKTSEEVDSKKAERNEPHIGHSEVIRLLKLIEISTSEIAERKKSKKHHVKRGHKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGGINPPGGVYQDGPWKGKSLVGNTAAFKVFAICNNIALFTSLCIVILLVSIIPYQRKPLKKLLVATHRMMWVSVGFMATAYVAASLVTIPHFPGTRWLFPVIISVAGGSLTVLFSYLGVETISHWFKKMNRVGRGLPIYFIKNNRVEDIPAIAKNEGEMPSLARTNSDLAASEGSGYFTY", "length": 601, "header": "tr|F4IPR3-1|F4IPR3_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IPR3-1" }, "locus": { "chromosome": "2", "start_pos": 10452034, "end_pos": 10454593, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G24600.4", "url": "https://www.ensemblgenomes.org/id/AT2G24600.4" }, { "database": "Ensembl Peptide", "id": "AT2G24600.4", "url": "https://www.ensemblgenomes.org/id/AT2G24600.4" } ] } }, { "isoform_ac": "Q9SJA5-1", "url": "https://www.uniprot.org/uniprotkb/F4IPR3/entry#Q9SJA5-1", "sequence": { "sequence": "MHPIFDAILQNDLPAFLGLVEARESSLEERSEEQNTNNTVLHVAAKLGHRELVAKIIELRPSLLSSRNAYGDTPLHLAALLGDVNIVMQMLDTGLELYSARNNKNQTPLHLAFVSIFMEAAKFIVEKTNSVDLDELNFALSSGSTCIVGIILERFPELARKNAWEVEDGSRSTLLHYACDKGDLELTSILLGLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVRTPSKETVFHLAARNKNTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIAASVSCGSPLIRYIVGKKIIDIRDRNNMGYRAYHLLPRQAQDYEFISSYLRCDTKTSEEVDSKKAERNEPHIGHSEVIRLLKLIEISTSEIAERKKSKKHHVKRGHKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGGINPPGGVYQDGPWKGKSLVGFMATAYVAASLVTIPHFPGTRWLFPVIISVAGGSLTVLFSYLGVETISHWFKKMNRVGRGLPIYFIKNNRVEDIPAIAKNEGEMPSLARTNSDLAASEGSGYFTY", "length": 548, "header": "tr|Q9SJA5-1|F4IPR3_ARATH Computationally mapped isoform of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IPR3-1" }, "locus": { "chromosome": "2", "start_pos": 10452116, "end_pos": 10454593, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G24600.1", "url": "https://www.ensemblgenomes.org/id/AT2G24600.1" }, { "database": "Ensembl Peptide", "id": "AT2G24600.1", "url": "https://www.ensemblgenomes.org/id/AT2G24600.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "Q9SJA5", "url": "https://www.uniprot.org/uniprotkb/Q9SJA5" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9SJA5", "url": "https://www.uniprot.org/uniprotkb/Q9SJA5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G24600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G24600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IPR3", "url": "https://www.uniprot.org/uniprotkb/F4IPR3" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4IPR3", "url": "https://www.uniprot.org/uniprotkb/F4IPR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IPR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPR3" }, { "id": "PF13962", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PGG", "eco_id": "ECO_0000259", "start_pos": 399, "end_pos": 508, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 }, { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047041", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047041", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047042", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047042", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G31060", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G31060", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MSMLFTI", "url": "https://omabrowser.org/oma/group/MSMLFTI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4IPW4", "url": "https://www.orthodb.org/?gene=F4IPW4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4IPW5", "url": "https://www.orthodb.org/?gene=F4IPW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR42908", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42908", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42908:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42908:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00009", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00009", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001189647", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189647", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G31060", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G31060", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IPW4", "url": "https://www.uniprot.org/uniprotkb/F4IPW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IPW4-1", "url": "https://www.uniprot.org/uniprotkb/F4IPW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IPW5", "url": "https://www.uniprot.org/uniprotkb/F4IPW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IPW5-1", "url": "https://www.uniprot.org/uniprotkb/F4IPW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGPLLRSLWSNTTRRSFSSHSSPSKFGYSLSSLRSFSAATASTAAAGAPNSSLDPNRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLERERGITISSKVSPFVTSIFWKDNELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEERCDEVESLVFDLFANCGATEEQLDFPVLYASAKEGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTGRVTSGVVRVGDRVNGLRKTDSGSEKIEEAKVVKLMKKKGTTIVSIDAAGAGDIICMAGLTAPSIGHTVASAEVTTALPTVELDPPTISMTFGVNDSPLAGQDGTHLTGGRIGDRLMAEAETNLAINVIPGLSESYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEKGQKLEPIEEVTIEINDEHVGLVMEALSHRRAEVIDMGPVPGNEGRTRLSLTCPSRGLVGYRCVFSSDTRGTGFMHRAFLTYEKYRGPLGNVRKGVLVSMARGTITAHSLMSLEARGILFVSPGLDSYDGMIIGEHSRETDLDLNPVKAKELTNIRSAGKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKTIRLRKRCLDVNKRKSQSKRAKD", "length": 671, "header": "tr|F4IPW5-1|F4IPW5_ARATH Isoform 1 of Elongation factor family protein OS=Arabidopsis thaliana OX=3702 GN=EMB2785 PE=1 SV=1 CANONICAL=F4IPW5-1" }, "isoforms": [ { "isoform_ac": "F4IPW4-1", "url": "https://www.uniprot.org/uniprotkb/F4IPW5/entry#F4IPW4-1", "sequence": { "sequence": "MAGPLLRSLWSNTTRRSFSSHSSPSKFGYSLSSLRSFSAATASTAAAGAPNSSLDPNRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLERERGITISSKVTSIFWKDNELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEERCDEVESLVFDLFANCGATEEQLDFPVLYASAKEGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTGRVTSGVVRVGDRVNGLRKTDSGSEKIEEAKVVKLMKKKGTTIVSIDAAGAGDIICMAGLTAPSIGHTVASAEVTTALPTVELDPPTISMTFGVNDSPLAGQDGTHLTGGRIGDRLMAEAETNLAINVIPGLSESYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEKGQKLEPIEEVTIEINDEHVGLVMEALSHRRAEVIDMGPVPGNEGRTRLSLTCPSRGLVGYRCVFSSDTRGTGFMHRAFLTYEKYRGPLGNVRKGVLVSMARGTITAHSLMSLEARGILFVSPGLDSYDGMIIGEHSRETDLDLNPVKAKELTNIRSAGKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKTIRLRKRCLDVNKRKSQSKRAKD", "length": 667, "header": "tr|F4IPW4-1|F4IPW5_ARATH Computationally mapped isoform of Elongation factor family protein OS=Arabidopsis thaliana OX=3702 GN=EMB2785 PE=1 SV=1 CANONICAL=F4IPW5-1" }, "locus": { "chromosome": "2", "start_pos": 13213172, "end_pos": 13218694, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G31060.2", "url": "https://www.ensemblgenomes.org/id/AT2G31060.2" }, { "database": "Ensembl Peptide", "id": "AT2G31060.2", "url": "https://www.ensemblgenomes.org/id/AT2G31060.2" } ] } }, { "isoform_ac": "F4IPW5-1", "url": "https://www.uniprot.org/uniprotkb/F4IPW5/entry#F4IPW5-1", "sequence": { "sequence": "MAGPLLRSLWSNTTRRSFSSHSSPSKFGYSLSSLRSFSAATASTAAAGAPNSSLDPNRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLERERGITISSKVSPFVTSIFWKDNELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEERCDEVESLVFDLFANCGATEEQLDFPVLYASAKEGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTGRVTSGVVRVGDRVNGLRKTDSGSEKIEEAKVVKLMKKKGTTIVSIDAAGAGDIICMAGLTAPSIGHTVASAEVTTALPTVELDPPTISMTFGVNDSPLAGQDGTHLTGGRIGDRLMAEAETNLAINVIPGLSESYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEKGQKLEPIEEVTIEINDEHVGLVMEALSHRRAEVIDMGPVPGNEGRTRLSLTCPSRGLVGYRCVFSSDTRGTGFMHRAFLTYEKYRGPLGNVRKGVLVSMARGTITAHSLMSLEARGILFVSPGLDSYDGMIIGEHSRETDLDLNPVKAKELTNIRSAGKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKTIRLRKRCLDVNKRKSQSKRAKD", "length": 671, "header": "tr|F4IPW5-1|F4IPW5_ARATH Isoform 1 of Elongation factor family protein OS=Arabidopsis thaliana OX=3702 GN=EMB2785 PE=1 SV=1 CANONICAL=F4IPW5-1" }, "locus": { "chromosome": "2", "start_pos": 13213100, "end_pos": 13218724, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G31060.3", "url": "https://www.ensemblgenomes.org/id/AT2G31060.3" }, { "database": "Ensembl Peptide", "id": "AT2G31060.3", "url": "https://www.ensemblgenomes.org/id/AT2G31060.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IPW4", "url": "https://www.uniprot.org/uniprotkb/F4IPW4" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IPW4", "url": "https://www.uniprot.org/uniprotkb/F4IPW4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G31060", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G31060", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q75JG3-1", "protein_name": "Tr-type G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISLNRVSRRVVQSVIKNNGCSNTVRSIGSVSLLNNNNNNNNISSKITNKPQNRININSNNNRFTNNSRVTRTSTFSLPESGKTITRLNINKNEQIGLDVAVYRYYSKNHEKIRNVAIIAHVDHGKTSLVDQLLRQSGAIKATEKDERVMDSNALEKERGITIMAKCTSFDYKNHKLNIVDTPGHGDFGGEVERVLSMVDGVVLLVDATEGPMAQTKFVLSKALSQGLRPIVVINKLDRSTARVDEVENEIFDLFATLGASDEQLNYPTLYASGRQGWAIRSRGDDQKDILPLLDTIVEYVECPNVKPEEPFTMLVTNLESDPFVGRIVTGKIYSGKAKVGQPLRVVDMKGNVIEDGSKITKIFCRRAMERIVLEEGEAGDIVGIAGFSQATVTNSLIAEGVKEPIKAIPIDPPVLAMYFEANNSPFAGKEGTHCTTLKIKSRLLKEIESNVSLQVNVTGESFEVKGRGELQLGILLENMRREGYEVAVSQPRVVFTKDENGNLMEPQEEVTIDVDTEYSGAIIEKLSKRNGDITDMKQSMGKSRLVFLVPSRGLIGLRSEIINDTKGTGVMNHLFHSYVPHKGPMDNKEKGALISMSEGVATAFSLSALEDRGVLFIGPQTQVYSGMIIGENSKLTDLDVNPVKSKQLTNIRTTVKEEGIRLSPPKLLKLEEAIACVKEDELIEITPKSIRLRKRELDSTKRQKINRDKKSM", "length": 713 }, "evidence": [ { "id": "F4IPW5", "url": "https://omabrowser.org/oma/group/F4IPW5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F4IPW5", "url": "https://www.uniprot.org/uniprotkb/F4IPW5" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F4IPW5", "url": "https://www.uniprot.org/uniprotkb/F4IPW5" } ], "pmid": "" }, { "name": "translation elongation factor activity", "id": "GO:0003746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003746", "evidence": [ { "database": "UniProtKB", "id": "F4IPW5", "url": "https://www.uniprot.org/uniprotkb/F4IPW5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IPW5", "url": "https://www.uniprot.org/uniprotkb/F4IPW5" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4IPW5", "url": "https://www.uniprot.org/uniprotkb/F4IPW5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4IPW5", "url": "https://www.uniprot.org/uniprotkb/F4IPW5" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F4IPW5", "url": "https://www.uniprot.org/uniprotkb/F4IPW5" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4IPW5", "url": "https://www.uniprot.org/uniprotkb/F4IPW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IPW5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 671, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IPW5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IPW5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IPW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IPW5" }, { "id": "PS51722", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51722" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tr-type G", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 259, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 379, "end_pos": 381 }, { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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GN=MSF3.6 PE=4 SV=1 CANONICAL=F4IRF0-1" }, "locus": { "chromosome": "2", "start_pos": 8094614, "end_pos": 8095779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G18680.1", "url": "https://www.ensemblgenomes.org/id/AT2G18680.1" }, { "database": "Ensembl Peptide", "id": "AT2G18680.1", "url": "https://www.ensemblgenomes.org/id/AT2G18680.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IRF0", "url": "https://www.uniprot.org/uniprotkb/F4IRF0" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IRF0", "url": "https://www.uniprot.org/uniprotkb/F4IRF0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G18680", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G18680", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F4IRF0", "url": "https://www.uniprot.org/uniprotkb/F4IRF0" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4IRF0", "url": "https://www.uniprot.org/uniprotkb/F4IRF0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IRF0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 287, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IRF0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IRF0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IRI1-1", "uniprot_ac": "F4IRI1", "uniprot_id": "F4IRI1_ARATH", "mass": { "chemical_mass": 88012.0, "monoisotopic_mass": 88012.0 }, "refseq": { "ac": "NP_179480", "name": "Transducin/WD40 repeat-like superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179480" }, "gene_names": [ { "name": "F19F24.10", "type": "synonym", "evidence": [ { "id": "NP_179480", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179480" }, { "id": "F4IRI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" } ] }, { "name": "F19F24_10", "type": "synonym", "evidence": [ { "id": "NP_179480", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179480" }, { "id": "F4IRI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" } ] } ], "protein_names": [ { "name": "Transducin/WD40 repeat-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_179480", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179480" }, { "id": "F4IRI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRI1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IRI1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IRI1", "locus": {} } ], "crossref": [ { "id": "F4IRI1", "url": "https://alphafold.ebi.ac.uk/entry/F4IRI1", "database": "AlphaFoldDB", "categories": [] }, { "id": "816406", "url": "https://www.ncbi.nlm.nih.gov/gene/816406", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057644", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057644", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G18900", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G18900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WILNTRI", "url": "https://omabrowser.org/oma/group/WILNTRI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4IRI1", "url": "https://www.orthodb.org/?gene=F4IRI1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45176:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45176:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23769", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23769", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23869", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23869", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_179480", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179480", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G18900", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G18900", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IRI1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IRI1-1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPASSPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMVIPSLLSEPQQIDKRRELSGKLVAYVSVEDISVVNQGSKELRGHIRRFNLAKSRIPRGDTLKETAEPESIVISPSGEFFGIRHKCKIHIWDVPSGGSRHAVSRKMTLHHTKVINAFAFHPTERVIAAGDVTGRVLIWRGFGNRKLALGNQKKKVRAMVDLDNAGVRGEDDAESCTTWHWHSAEVNVLNFSSDGAYLYSGGREGVLVVWQLDTGKKKFLPRIGSPLLYFMWSPDPTLSSVVCADNQIHLLKMPSMEILRTISGIKPPPSLPRMYEGLASTVAFDRSSGIAALCTENYCVQLYNLLNDRGISEIQVCERNHQPGDEITVVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWASEPDSKTFTLSTIVYEPHRDAGVSAIVFHPTRSMAVSTSFGGDFKIWVCNSDKNQTDKDSSWICHAVGSYKKKPMTAAAFSGDGTVMAVAAENVITLWNPDKNILLSVLGSTLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSWSYGLRIEAVTSAVDSSAFAVLAVIPKTFKTDESKENIFRGRDGAILLFNGSDPKPVSIWTVMKARGGSISFLEGDKSQLRLAYVNGSHEYVVFDPNSDESHERSAVDYDGLAGLEETGDAGYTSLYGQLPDYDKKRMEDVESLGTPFVSSERPWETIFSGSTLNFPPLQKLCAEFFESLMEKRTAVVE", "length": 804, "header": "tr|F4IRI1-1|F4IRI1_ARATH Isoform 1 of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IRI1-1" }, "isoforms": [ { "isoform_ac": "F4IRI1-1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1/entry#F4IRI1-1", "sequence": { "sequence": "MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPASSPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMVIPSLLSEPQQIDKRRELSGKLVAYVSVEDISVVNQGSKELRGHIRRFNLAKSRIPRGDTLKETAEPESIVISPSGEFFGIRHKCKIHIWDVPSGGSRHAVSRKMTLHHTKVINAFAFHPTERVIAAGDVTGRVLIWRGFGNRKLALGNQKKKVRAMVDLDNAGVRGEDDAESCTTWHWHSAEVNVLNFSSDGAYLYSGGREGVLVVWQLDTGKKKFLPRIGSPLLYFMWSPDPTLSSVVCADNQIHLLKMPSMEILRTISGIKPPPSLPRMYEGLASTVAFDRSSGIAALCTENYCVQLYNLLNDRGISEIQVCERNHQPGDEITVVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWASEPDSKTFTLSTIVYEPHRDAGVSAIVFHPTRSMAVSTSFGGDFKIWVCNSDKNQTDKDSSWICHAVGSYKKKPMTAAAFSGDGTVMAVAAENVITLWNPDKNILLSVLGSTLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSWSYGLRIEAVTSAVDSSAFAVLAVIPKTFKTDESKENIFRGRDGAILLFNGSDPKPVSIWTVMKARGGSISFLEGDKSQLRLAYVNGSHEYVVFDPNSDESHERSAVDYDGLAGLEETGDAGYTSLYGQLPDYDKKRMEDVESLGTPFVSSERPWETIFSGSTLNFPPLQKLCAEFFESLMEKRTAVVE", "length": 804, "header": "tr|F4IRI1-1|F4IRI1_ARATH Isoform 1 of Transducin/WD40 repeat-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IRI1-1" }, "locus": { "chromosome": "2", "start_pos": 8188237, "end_pos": 8192536, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G18900.1", "url": "https://www.ensemblgenomes.org/id/AT2G18900.1" }, { "database": "Ensembl Peptide", "id": "AT2G18900.1", "url": "https://www.ensemblgenomes.org/id/AT2G18900.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IRI1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Maor Rudy, Jones Alex, N\u00fchse Thomas S, Studholme David J, Peck Scott C, Shirasu Ken", "evidence": [ { "database": "UniProtKB", "id": "F4IRI1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" } ], "reference": [ { "type": "PubMed", "id": "17272265", "url": "https://glygen.org/publication/PubMed/17272265" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IRI1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G18900", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G18900", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K9A7-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "Wdr75", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVEERVRVVRCGGSRLNFRRAVFSVDSKYIFCVSGDFIKVYSTATEECVHILRGHKHVVSGILINPNNHLQLYSCSFDGTIKLWDYLDGILIKTFTVGPKLHALFIPAHAEDTVFLTINKEDPDIFQLVSVKLPKSTSRNVEAKELTFVLDYINKSPKSIAFGNEGEYVAAVRDFYLSVYFLKKKKTCNFTLPSTKNKKNARNKFTCVACHPKEDCIASGHMDGKIRLWRNFHDDKLYTYTCLHWHHDMVMDLAFTVTGTSLLSGGQECVLVEWRDGSEKNKEFLPRLGSAIEHISVSPAGDLFCTSHSDNKITVIHRNLDASAVIQGLVKDRSISTGLMVDPRTKALVLNGKPGHLQFYSLQSDKQLYNLDIIQQEYINDQGLIQIELTKAAFGCSGSWLATVEQRQENENELELQMKLWNYSKKTQGFVLNTKISMPHDDHITALCFNNAENYEKPILVTASRDGHFKVWVLTDDSDIYKKAIGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSETWELKCTFCQRAGKIRHLCFGRLTCSKYLLGTTENNLLCCWNLLSCSMQWSAKLNVRVMEADPYSDHIAAVARSSEGSDLFVFKPSEPRPLYIQKNVSREKVQWGVFVPRDVPESFTSEAHQWLNRSQFYFLTESQCLLTFSTKYAEEKLTPTSKQLLAEESLPTTPFSFILGKHRQQQDTKSTETSESELVQLPLTENIPAITELLHTPAHVLPSASFLCTLFVNSLLLSKETKSAEEISDDVDMEGNEESDDSDEEYDLTEKAKETSNPDLGEDAIHQLSKSEEKELRKFRKVDYSWLTAL", "length": 829 }, "evidence": [ { "id": "F4IRI1", "url": "https://omabrowser.org/oma/group/F4IRI1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YHC2-1", "protein_name": "WD repeat domain 75", "gene_name": "WDR75", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPCVQRAELRGGRAAVRFRSRKMVAPAALRVVRCGGRAMHGARAVFSVGARFLLCASGDFVKMYSVATEELVQLLRGHSDLVTGVQLAPHNRLQLYSSSLDGTIKLWDFTDGILIKTFTVGYQLLALYALPSSEDSVFVIIPKSGERDTFQLVSVKLTKAAGQDMEAKELSVVLEGVDASPKCTAFGREGEYVASVKDVNLQVYFFKQKQLNRFSLRATNKKGGNNVFTCVACHPQEDCIATGHADGKIRLWRNFNHKKEYTFSTLHWHHDKVLDLAFSLEGTSLLSGGVESVLVQWHCGSDCKRDFLPRLGSAIEYVSISSDGTFYCTSHTDNRITIINSNLRFSKTIQGLIKARDVKTGLVVDPRTKALVLNGEPGHLQFYCLQSDKQLYSLDIVQQEYIHQAGLNQSDLVRVAFSAQGKWLATVEEREETDLELQLKLWFFDEETQSFKLNTRISMPHEDHITAMCFRDTDEMEDDSLMLVTTGRDCVFKVWVILEDTDPEAQQSLSWSCDFVGSYHSYQATNCCFSEDGSLLAVSFEETVTVWDSSTWDLKCTFCHPPGKIRSICFGRLTCSKYLIGATDHGFLCCWNLLSCALEWSAHLNVVVLQPDPLSEHIAAVSWLFKESSLFVFKPNEARPICIQRKFCKERIQFAAFVPRDVPETIGSEKYLWLRRSQLFFLTDTQELMTVSTKSAQERLTLSSKQLAVEESLPVTPFSLLLGKHRHQQSQGDVDLGKIVHHHHEQDSPAVKELLHTPAHVLPSASFLCPIFINSLLVSKENKSTEETPDEVEMESEEAEDDSDEENSVTEMKQEDKMPLESLGETTHRLSKSEEKELRKIRKVDYSWISVF", "length": 852 }, "evidence": [ { "id": "F4IRI1", "url": "https://omabrowser.org/oma/group/F4IRI1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MCR2-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVEEEGIRVVRCGGSELNFRRAVFSADSKYIFCVSGDFIKVYSTATEECVHILQGHRNLVTGIQLNPNNHLQLYSCSVDGTIKLWDYIDGILIKTFRVGCELHALFTLSHAEDSVFVTINKEKPDVFQLASVKLPKSSSQEIEAKELSFVLDYVNQSPKCIAFGNEGEYVAAVRDFYLSVYFFKKKTTTRFTLSSSRNKKHARNNFTCVTCHPKEDCIATGHKDGKIRLWRNFDDEKKYTYTCLHWHHDLVMDLAFSVTGSSLLSGGRESVLVEWREAAEKNKEFLPRLGATIEHISVSPAGDLFCTSHSDNKITIIHRNLEASAVIQGLVKDRSIFTGLMIDPRTKALVLNGKPGHLQFYSLQSDKQLYNLDIIQQEYINDSGLIQIELTKAAFGCYGNWLATVEQRQEKETELELQMKLWMYNKKTQGFVLNTKVNMPHEDHITALCFCNAEKSESSTLVTASKDGHFKVWILTDDSDIYKKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSETWELKCTFCQRAGKIRHLCFGRLTCSKYLLGVTENGILCCWNLLSCALEWSTKLNVRVMEPDPNSENIAAIAQSSVGSDLFVFKPSEPRPLYIQKNICREEVLWGVFVPRDVPESFTSEAYQWLNRSQFYFLTKSQSLLTFSTQSPEEKLTPTSKQLLAEESLPTTPFYFLLGKHRKEQQNDKLNEALENELVQLPLTENIPAISELLRTPAHVLPSASFLCSMFVNSLLLSKETKSAEEHPDDIDMVEEKESDDSDEENNFTEKIQDTNNTDLEEDIIYQLSKSEEKELKKFRKVDYSWIAAL", "length": 831 }, "evidence": [ { "id": "F4IRI1", "url": "https://omabrowser.org/oma/group/F4IRI1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3U821-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "Wdr75", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVEEGVRVVRCGGSRLNFRRAVFSVDSKYIFCVSGDFVKVYSTTTEECVHILHGHTDLVSGILVNPSNHLQLYSCSFDGTIKLWDYVDGILIKTFTIGPKLHAFFIPLHAEDSVFLTISKEEPDIFQLVSVKLPKSTSQDVEARQLTFVLDYINRSPKCIAFGNEGEYVAAVRDFYLSVYFFKKKKTCNFTLPSTKNKKNAKNKFTCVACHPKEDCIASGHMDGKIRLWRNFHSDQKYTYTCLHWHHDMVMDLAFTVTGTSLLSGGRECVLVEWRDGSEKNKEFLPRLGSSIEHISVSPAGDLFCTSHSDNKITVIHRNLDASAVIQGLVKDRSISTGLMVDPRTKALVLNGKPGHLQFYSLQGDKQLYNLDIIQQEYINDEGLTQTELTKAAFGCSGTWLATVEQRQENENELELQMKLWNYSKKTQGFVLNTKIAMPHDDHITALCFNNAESYEKPILVTASRDGHFKVWILTDDSDIYKKAIAWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSQTWELKCTFCQRAGKIRHLCFGRLTCSKYLLGTTDNGILCCWNLLSCSIQWSAKLNVRVMEPDPYSDHVAAVAQSSAGSDLFVFKPSEPRPLYIQKNVSREEVQWGVFVPRDVPESFTSETHQWLNRSQFYFLTKSQSLLTFSTKSPEEKLTPTSKQLLAEESLPTTPFSFILGKHRQQQGAKLTETSENELVQLPLTENIPAITELLHTPAHVLPSASFLCSLFVNSLLLSKETKSAEEVPDDVDMEGNKESDDSDEEYDLTEKDKETNNNTDLGEDAIHQLSKSEEKELRKFRKVDYSWLTAL", "length": 830 }, "evidence": [ { "id": "F4IRI1", "url": "https://omabrowser.org/oma/group/F4IRI1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7ZVR1-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "wdr75", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVEKTDIRVVRCGGSKINFRPPIISHDSRFVLCVSGDSVKVYSTRTEEWLHNLQGHNNQVTGIAFNPANQLQVYSCSADGTVKLWDFIDGILIKTFVIGYPLYSLYVSEKHEGVIFLIVSMVTDSNNESFQLVAVHLPKSAEQEVEAKELSTVASKISPNPSCTAFGRGGEFIAFSRHLQLNVYFFRKQKTYSFSLKATDKKAGKNAFTCVACHPTDDCIASGHEDGKIRLWRNFNHKKEYTYSTKHWHHDAVNHLCFTPEGSNLLSGGIESVLVQWQYGDMSKKEFLPRLGGSISHVSASADGQLFCTAHSDNKISIIESSFKVSGLIQGLVRGDAVSTDLMIDPRSKALVLNGKPGHLQFYSLLRDKHLYNLDIVQQEYIYEAGLDQFEVVKAVFDVKGSWLATVEERGHKTSDLEFFLKLWAFDETTQSFVLNTTVTEAHSERITSMCFSSSEETTMLVTTALDGQFKAWCQTADAQQAQNYWSCDFVGSYHNLKPKNCCFSADGSILAVSFQEVLTLWSPETWELLTTLCQPPGEIRDLCFGRLSCSKYLLSTTTKNLLCCWNLLTCALEWSTSVDVSRLQSDPLSENVAAFSFESKHTHLFVFKPSEPRPLFSQRYVCLERVDRAVFVPREEPFNSCDESCQWLNRSQLYFLTHNMDLLTFSSATEEDRMLSSSKRLVIDESVAVTPFYLLLGRHRKQQHKLNTETQEPADKPQHTQGSVTIKQLLHTPAHVLPAASVLCSMFVRSLLISNTGVREEMDSSEQEMDSEKEEEESEEEMEACDGQQELRAQGSVDEQKPKLSKAQERELKSLRKTDFSWMTSLIDSKP", "length": 832 }, "evidence": [ { "id": "F4IRI1", "url": "https://omabrowser.org/oma/group/F4IRI1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVEEENIRVVRCGGSELNFRRAVFSADSKYIFCVSGDFVKVYSTVTEECVHILHGHRNLVTGIQLNPNNHLQLYSCSLDGTIKLWDYIDGILIKTFIVGCKLHALFTLAQAEDSVFVIVNKEKPDIFQLVSVKLPKSSSQEVEAKELSFVLDYINQSPKCIAFGNEGVYVAAVREFYLSVYFFKKKTTSRFTLSSSRNKKHAKNNFTCVACHPTEDCIASGHMDGKIRLWRNFYDDKKYTYTCLHWHHDMVMDLAFSVTGTSLLSGGRESVLVEWRDATEKNKEFLPRLGATIEHISVSPAGDLFCTSHSDNKIIIIHRNLEASAVIQGLVKDRSIFTGLMIDPRTKALVLNGKPGHLQFYSLQSDKQLYNLDIIQQEYINDYGLIQIELTKAAFGCFGNWLATVEQRQEKETELELQMKLWMYNKKTQGFILNTKINMPHEDCITALCFCNAEKSEQPTLVTASKDGYFKVWILTDDSDIYKKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSVTWELKCTFCQRAGKIRHLCFGRLTCSKYLLGATENGILCCWNLLSCALEWNAKLNVRVMEPDPNSENIAAISQSSVGSDLFVFKPSEPRPLYIQKGISREKVQWGVFVPRDVPESFTSEAYQWLNRSQFYFLTKSQSLLTFSTKSPEEKLTPTSKQLLAEESLPTTPFYFILGKHRQQQDEKLNETLENELVQLPLTENIPAISELLHTPAHVLPSAAFLCSMFVNSLLLSKETKSAKEIPEDVDMEEEKESEDSDEENDFTEKVQDTSNTGLGEDIIHQLSKSEEKELRKFRKIDYSWIAAL", "length": 830 }, "evidence": [ { "id": "F4IRI1", "url": "https://omabrowser.org/oma/group/F4IRI1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IRI1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F4IRI1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F4IRI1", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 519, "end_pos": 521, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 665, "end_pos": 667, "annotation": "n_glycosylation_sequon" }, { "start_pos": 701, "end_pos": 703, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IRI1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 804, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IRI1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IRI1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IRI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRI1" }, { "id": "PF23769", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23769" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WD repeat-containing protein 75 second beta-propeller", "eco_id": "ECO_0000259", "start_pos": 400, "end_pos": 641, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 290, "end_pos": 292 }, { "start_pos": 519, "end_pos": 521 }, { "start_pos": 608, "end_pos": 610 }, { "start_pos": 665, "end_pos": 667 }, { "start_pos": 701, "end_pos": 703 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IRK4-1", "uniprot_ac": "F4IRK4", "uniprot_id": "F4IRK4_ARATH", "mass": { "chemical_mass": 44793.0, "monoisotopic_mass": 44793.0 }, "refseq": {}, "gene_names": [ { "name": "F13D4.80", "type": "synonym", "evidence": [ { "id": "F4IRK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRK4" } ] }, { "name": "F13D4_80", "type": "synonym", "evidence": [ { "id": "F4IRK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRK4" } ] } ], "protein_names": [ { "name": "Bromo-adjacent homology (BAH) domain-containing protein", "type": "synonym", "evidence": [ { "id": "F4IRK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IRK4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IRK4", "url": "https://www.uniprot.org/uniprotkb/F4IRK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IRK4", "locus": {} } ], "crossref": [ { "id": "F4IRK4", "url": "https://alphafold.ebi.ac.uk/entry/F4IRK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G25120", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G25120", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817050", "url": "https://www.ncbi.nlm.nih.gov/gene/817050", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G25120", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G25120", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DCEEKHE", "url": "https://omabrowser.org/oma/group/DCEEKHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46871", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46871", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46871:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46871:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01426", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01426", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G25120", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G25120", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IRK4", "url": "https://www.uniprot.org/uniprotkb/F4IRK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IRK4-1", "url": "https://www.uniprot.org/uniprotkb/F4IRK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTEKMNEASQDEDNVALSNTKETEKKQRKRKKDCEEKNKKKRKKDCEEKHETKEMELAWKPEDCAKPLGEVSKVTGKGKKKKSHFKTFTFRGNQYALEDSVQLVPDDPNSKPYCAIIKDIYIPNKEKYVKLAVHWFYRPEDVDKKHVGKWESKDSRNLFYSFHRDEVFAESVKHKCVVNFVPENKQIPNRREHPCFIVQNVYDFVKKKVRKFTDKNFDVHQKNEIDRLVAKTSLRLGDLPDIEKDQVTKTSKGKRTVQRKSPKTSTVYKSILEDFDLLTGDSDRDKRLGELLEAVKHECRTSKKKGARDDDSYWPDDVVPVVRALEHVFYDSMAEDMSKYHHKLEILVDELKVSLIPFTHPSYIFIFVLHVLDFYLFFC", "length": 380, "header": "tr|F4IRK4-1|F4IRK4_ARATH Isoform 1 of Bromo-adjacent homology (BAH) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IRK4-1" }, "isoforms": [ { "isoform_ac": "F4IRK4-1", "url": "https://www.uniprot.org/uniprotkb/F4IRK4/entry#F4IRK4-1", "sequence": { "sequence": "MLTEKMNEASQDEDNVALSNTKETEKKQRKRKKDCEEKNKKKRKKDCEEKHETKEMELAWKPEDCAKPLGEVSKVTGKGKKKKSHFKTFTFRGNQYALEDSVQLVPDDPNSKPYCAIIKDIYIPNKEKYVKLAVHWFYRPEDVDKKHVGKWESKDSRNLFYSFHRDEVFAESVKHKCVVNFVPENKQIPNRREHPCFIVQNVYDFVKKKVRKFTDKNFDVHQKNEIDRLVAKTSLRLGDLPDIEKDQVTKTSKGKRTVQRKSPKTSTVYKSILEDFDLLTGDSDRDKRLGELLEAVKHECRTSKKKGARDDDSYWPDDVVPVVRALEHVFYDSMAEDMSKYHHKLEILVDELKVSLIPFTHPSYIFIFVLHVLDFYLFFC", "length": 380, "header": "tr|F4IRK4-1|F4IRK4_ARATH Isoform 1 of Bromo-adjacent homology (BAH) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IRK4-1" }, "locus": { "chromosome": "2", "start_pos": 10689934, "end_pos": 10691569, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G25120.1", "url": "https://www.ensemblgenomes.org/id/AT2G25120.1" }, { "database": "Ensembl Peptide", "id": "AT2G25120.1", "url": "https://www.ensemblgenomes.org/id/AT2G25120.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IRK4", "url": "https://www.uniprot.org/uniprotkb/F4IRK4" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IRK4", "url": "https://www.uniprot.org/uniprotkb/F4IRK4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G25120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G25120", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F4IRK4", "url": "https://www.uniprot.org/uniprotkb/F4IRK4" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity", "id": "GO:0001217", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001217", "evidence": [ { "database": "UniProtKB", "id": "F4IRK4", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF12428", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12906", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12906", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G02960", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G02960", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IS71", "url": "https://www.uniprot.org/uniprotkb/F4IS71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IS71-1", "url": "https://www.uniprot.org/uniprotkb/F4IS71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O80611", "url": "https://www.uniprot.org/uniprotkb/O80611", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O80611-1", "url": "https://www.uniprot.org/uniprotkb/O80611-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPVNAEVEEMRSESPVVNDKALDISDDDHDDENEPLIVSGECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAPPPPLQPEETTIDIGGGWTISGLDVHDPRLLAIAEAERRYLESEYVEYTASSASGAAFCRSAALILMALLLLRHALTITDDTDGEEDDPSSILSVSSLKLLPFFFFFYFLSQLHLSCNTKPQNCLILILACPAPSCWISSSMLYHGLGHQYSTAPKTETGSCSFGYTVCVGASVRAA", "length": 275, "header": "tr|F4IS71-1|F4IS71_ARATH Isoform 1 of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IS71-1" }, "isoforms": [ { "isoform_ac": "F4IS71-1", "url": "https://www.uniprot.org/uniprotkb/F4IS71/entry#F4IS71-1", "sequence": { "sequence": "MSPVNAEVEEMRSESPVVNDKALDISDDDHDDENEPLIVSGECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAPPPPLQPEETTIDIGGGWTISGLDVHDPRLLAIAEAERRYLESEYVEYTASSASGAAFCRSAALILMALLLLRHALTITDDTDGEEDDPSSILSVSSLKLLPFFFFFYFLSQLHLSCNTKPQNCLILILACPAPSCWISSSMLYHGLGHQYSTAPKTETGSCSFGYTVCVGASVRAA", "length": 275, "header": "tr|F4IS71-1|F4IS71_ARATH Isoform 1 of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis 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"chromosome": "2", "start_pos": 862041, "end_pos": 864452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G02960.1", "url": "https://www.ensemblgenomes.org/id/AT2G02960.1" }, { "database": "Ensembl Peptide", "id": "AT2G02960.1", "url": "https://www.ensemblgenomes.org/id/AT2G02960.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "O80611", "url": "https://www.uniprot.org/uniprotkb/O80611" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "O80611", "url": "https://www.uniprot.org/uniprotkb/O80611" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G02960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G02960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IS71", "url": "https://www.uniprot.org/uniprotkb/F4IS71" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4IS71", "url": "https://www.uniprot.org/uniprotkb/F4IS71" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4IS71", "url": "https://www.uniprot.org/uniprotkb/F4IS71" } ], "pmid": "" }, { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "F4IS71", "url": "https://www.uniprot.org/uniprotkb/F4IS71" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IS76-1", "uniprot_ac": "F4IS76", "uniprot_id": "F4IS76_ARATH", "mass": { "chemical_mass": 42441.0, "monoisotopic_mass": 42441.0 }, "refseq": { "ac": "NP_178401", "name": "hypothetical protein (DUF577)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178401" }, "gene_names": [ { "name": "T17M13.18", "type": "synonym", "evidence": [ { "id": "NP_178401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178401" }, { "id": "F4IS76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IS76" } ] }, { "name": "T17M13_18", "type": "synonym", "evidence": [ { "id": "NP_178401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178401" }, { "id": "F4IS76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IS76" } ] } ], "protein_names": [ { "name": "DUF577 domain-containing protein", "type": "recommended", "evidence": [ { "id": "F4IS76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IS76/entry#names_and_taxonomy" } ] }, { "name": "hypothetical protein (DUF577)", "type": "synonym", "evidence": [ { "id": "NP_178401", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178401" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IS76", "url": "https://www.uniprot.org/uniprotkb/F4IS76" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IS76", "locus": {} } ], "crossref": [ { "id": "F4IS76", "url": "https://alphafold.ebi.ac.uk/entry/F4IS76", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G03010", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G03010", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "814830", "url": "https://www.ncbi.nlm.nih.gov/gene/814830", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G03010", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G03010", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR31861", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31861:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31861:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04510", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04510", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_178401", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_178401", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G03010", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G03010", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IS76", "url": "https://www.uniprot.org/uniprotkb/F4IS76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IS76-1", "url": "https://www.uniprot.org/uniprotkb/F4IS76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMIVFAVRMMMVDIEVMKLSGKNTREILVSESHEEVAMIIDHLFKRQDSEEYKTSRALYDICVSCNPESDIKILRKIVSFVTYNVVELHKDKWDELGDCILSLASSKEPVKAFHVFIDLPPVYKNQCHFVLASMNEIEGVVGTETKEIVRNAKMLITEPHDDLKNGREEFERATRLYCIEFYKRACGKRNGSWSCEERFQRCGNNWNDTVLANTNSLLWRLYAIKGNVIVERGVKQVEKELPENERGGTFTTWTVRKDEEAAAREEQIKREDARKRDAESRLEVLRNVRGLAPLTGGREGVLEKRNDENDSVRGEGDDGGCGGYEAKKKKMSGKKSLKELKRERVEKERERALFMKQSQRAGGFSRR", "length": 368, "header": "tr|F4IS76-1|F4IS76_ARATH Isoform 1 of DUF577 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IS76-1" }, "isoforms": [ { "isoform_ac": "F4IS76-1", "url": "https://www.uniprot.org/uniprotkb/F4IS76/entry#F4IS76-1", "sequence": { "sequence": 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CANONICAL=F4ISB4-1" }, "isoforms": [ { "isoform_ac": "F4ISB3-1", "url": "https://www.uniprot.org/uniprotkb/F4ISB4/entry#F4ISB3-1", "sequence": { "sequence": "MVRKTTSKSYSVALVIVMVIYVAFSSVFDRQLFRSLSFSQGTLQQRWESRRTKQNPKVMAASAKITCDRSHTSYDLCSINGSCILNPKTGTLTLMDRTLTTSAPLVEKIRPYPRKSENWIMPRIRELKLTSGPSDLTRSCDITHDSPAIVFSAGGYTGSIYHDFIDGFIPLFITANSVYPDRDFILVVVNPKEWWMPKYIDILGTFSKHKTILLDKENASITHCFTSATVGLISHGPMTIDPTQIPNSKSLVDFHNLLDKALNPNLSIIKINKPRLILVRRYGNIGRVILNEEEIREMLEDVGFEVITFRPSKTTSLREAYKLIKSSHGMIGVHGAALTQLLFLRPGSVLVQIVPVGLGWVSKTCFETPAKAMKLDYTEYRVNVEESSLIEKYSRDDLVLKDPIAYRGMDWNVTKMKVYLKDQDVRLDVNRFRKHMNEAYKKAKSFMDLNG", "length": 451, "header": "tr|F4ISB3-1|F4ISB4_ARATH Computationally mapped isoform of Glycosyltransferase family 61 protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ISB4-1" }, "locus": { "chromosome": "2", "start_pos": 1022190, "end_pos": 1024497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G03360.1", "url": 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"+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G03360.2", "url": "https://www.ensemblgenomes.org/id/AT2G03360.2" }, { "database": "Ensembl Peptide", "id": "AT2G03360.2", "url": "https://www.ensemblgenomes.org/id/AT2G03360.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4ISB3", "url": "https://www.uniprot.org/uniprotkb/F4ISB3" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4ISB3", "url": "https://www.uniprot.org/uniprotkb/F4ISB3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G03360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G03360", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": 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"RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_671831" } ] }, { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4ISC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ISC4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4ISC4", "url": "https://www.uniprot.org/uniprotkb/F4ISC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4ISC4", "locus": {} } ], "crossref": [ { "id": "F4ISC4", "url": "https://alphafold.ebi.ac.uk/entry/F4ISC4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G11623", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G11623", 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"Other" ] }, { "id": "NP_671831", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_671831", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G11623", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G11623", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4ISC4", "url": "https://www.uniprot.org/uniprotkb/F4ISC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ISC4-1", "url": "https://www.uniprot.org/uniprotkb/F4ISC4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ISC5", "url": "https://www.uniprot.org/uniprotkb/F4ISC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ISC5-1", "url": "https://www.uniprot.org/uniprotkb/F4ISC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKGSITETLVEARLGRGWRRYGWSEAANRGSELRWSLPVGARSPVKNLIETCIYKYMSLEETETYVEDNHKISHHLTKPIWEQLQKESPEFFKKYYFLCELARQIVSFS", "length": 110, "header": 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"MSLEETETYVEDNHKISHHLTKPIWEQLQKESPEFFKKYYFLCELARQIVSFS", "length": 53, "header": "tr|F4ISC5-1|F4ISC5_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ISC4-1" }, "locus": { "chromosome": "2", "start_pos": 4660870, "end_pos": 4661415, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G11623.2", "url": "https://www.ensemblgenomes.org/id/AT2G11623.2" }, { "database": "Ensembl Peptide", "id": "AT2G11623.2", "url": "https://www.ensemblgenomes.org/id/AT2G11623.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen 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"MLVESSFSSSVETSLLNVSEYQDPFAAYDWTSLAESYQMIHKVPEQSQVSFLKNVPVTDTMNLDESKHPKHQESCSEKSVMHKVSGKALTSLVYRRRKRTLIPGGTEEHNLGKIRKQDDSLDDSIVSLYNPEESTKRKNRFNNCLVYSRKKRRGESSCTFTGETTIRGDGLDDAFVSEHDCGETRRRGNRSDDCLVYSRKKGRVKFNSCSFSKHVTGRTKISYDQADSSACSQMGQIVKADSSLTRPKPGEIKKSGHQLVYSQRKQLVKSNGSFTESHVGKTKRNGDRSEVLLTYSRRKKSGKSIGVRVNGFLVYTRKKLKFRGPFARRDLSETKKNGDQRSTVSSRELLDDTQVTEVTCSSDGTNDSCSSLKSSSEVNSTSSKSREDDCYSSDSGVSETDTDGSSSPFRQCKHCDKPGTVEKMLICDECEEAYHTRCCGVQMKDVAEIDEWLCPSCLKNQSSKTKTKGRISHERKWRVTVPFVIGIRIGKMFQADVPDWSGPTMSDTSFVGEPLEIGQSEYMHDLKKAKNSKKQCSAVNWLQCREEDTNGVICGKWRRAPRSEVQTKDWECFCCFSWDPSRADCAVPQELETSEILKQLKYIKMLRPRSDAKKRKLGPKGRSRSHIKGKS", "length": 631, "header": "tr|F4ISG1-1|F4ISG1_ARATH Isoform 1 of RING/FYVE/PHD zinc finger superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4ISG1-1" }, "locus": { "chromosome": "2", "start_pos": 8356092, "end_pos": 8360212, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G19260.1", "url": "https://www.ensemblgenomes.org/id/AT2G19260.1" }, { "database": "Ensembl Peptide", "id": "AT2G19260.1", "url": "https://www.ensemblgenomes.org/id/AT2G19260.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 504, "start_aa": "Thr", "end_pos": 504, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr504", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 316, "end_pos": 316, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ISG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISG1" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr316" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4ISG1", "url": "https://www.uniprot.org/uniprotkb/F4ISG1" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4ISG1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ISG1" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4ISG1", "url": "https://www.uniprot.org/uniprotkb/F4ISG1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G19260", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G19260", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4ISG1", "url": "https://www.uniprot.org/uniprotkb/F4ISG1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F4ISG1", "url": "https://www.uniprot.org/uniprotkb/F4ISG1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4ISG1", "url": "https://www.uniprot.org/uniprotkb/F4ISG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4ISG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ISG1" }, { "id": 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G03630", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IT95", "url": "https://www.uniprot.org/uniprotkb/F4IT95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IT95-1", "url": "https://www.uniprot.org/uniprotkb/F4IT95-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IT96", "url": "https://www.uniprot.org/uniprotkb/F4IT96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IT96-1", "url": "https://www.uniprot.org/uniprotkb/F4IT96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESKHEEHVLSKQKHDQDVNKKGSLDDENGDVEHKTIPLQETETVIINSESHSRLSSSSSSSSSSSSYLSPPKDLPEEVLKESLNDPEISSPPVQVMDRDNNGKYDPNRIPSSVFERSKSNVPAEWSCTSNESLFSIHLGNNSFTGYGGDLMKSGELYKSGELLAYSPGLPMPPVPGSEPKPVVEEPKVVESDKEEKVVLVEETHTSSSDEEEGKRESHEKEQHPAVSWKTPTTSYRSNRSSNSAHSFSFPILAGAASDSRKVETEKQKEQANQSQESQKPVADATNQKQSMCRCFSCFPQCPWCCSSCS", 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"database": "Ensembl Peptide", "id": "AT2G03630.1", "url": "https://www.ensemblgenomes.org/id/AT2G03630.1" } ] } }, { "isoform_ac": "F4IT96-1", "url": "https://www.uniprot.org/uniprotkb/F4IT95/entry#F4IT96-1", "sequence": { "sequence": "MESKHEEHVLSKQKHDQDVNKKGSLDDENGDVEHKTIPLQETETVIINSESHSRLSSSSSSSSSSSSYLSPPKDLPEEVLKESLNDPEISSPPVQVMDRDNNGKYDPNRIPSSVFERSKSNVPAEWSCTSNESLFSIHLGNNSFTGYGGDLMKSGELYKSGELLAYSPGLPMPPVPGSEPKPVVEEPKVVESDKEEKP", "length": 198, "header": "tr|F4IT96-1|F4IT96_ARATH Computationally mapped isoform of Suppressor SRP40-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IT95-1" }, "locus": { "chromosome": "2", "start_pos": 1103205, "end_pos": 1104230, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G03630.2", "url": "https://www.ensemblgenomes.org/id/AT2G03630.2" }, { "database": "Ensembl Peptide", "id": "AT2G03630.2", "url": "https://www.ensemblgenomes.org/id/AT2G03630.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IT95", "url": "https://www.uniprot.org/uniprotkb/F4IT95" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IT95", "url": "https://www.uniprot.org/uniprotkb/F4IT95" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G03630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G03630", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IT95", "url": "https://www.uniprot.org/uniprotkb/F4IT95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 141, "end_pos": 143, "annotation": 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"database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTPESNAPSVDPQFVGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIVTIKSLKGINDQIMSIDYKSSRIEILTADSQSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFVLNDTFRYVSDEFVEPEATKEVEESQSTNAITEPANESVEAVIVPTEAKTTVTKPASAIPNGHAKVPEEKVVNENSSLPKAAEAKLQEEVPKKSFALIVQSLAQSAGTLQVKASPVKRKPVEKPVAAPERKAPSPIRKQASAESIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAVKNVFQAHRESPIRIGNRRASIEEKRGKFLKGIVVSKIVTLIKCKNKILILLFLDYAGGNNQNGNRVSTRNNSGYKNEDGFRRDGYKPRGSGVNGGRGYGRRNSESNGDGKAYQNNGHGNTEAKN", "length": 453, "header": "tr|F4IT98-1|F4IT98_ARATH Isoform 1 of Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IT98-1" }, "isoforms": [ { "isoform_ac": "F4IT98-1", "url": "https://www.uniprot.org/uniprotkb/F4IT98/entry#F4IT98-1", "sequence": { "sequence": 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pathway protein", "type": "synonym", "evidence": [ { "id": "NP_179561", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179561" }, { "id": "F4ITF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4ITF9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4ITF9", "url": "https://www.uniprot.org/uniprotkb/F4ITF9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ISTL5", "url": "https://www.uniprot.org/uniprotkb/F4ITF9", "locus": {} } ], "crossref": [ { "id": "F4ITF9", "url": "https://alphafold.ebi.ac.uk/entry/F4ITF9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G19710", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G19710", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "816490", "url": "https://www.ncbi.nlm.nih.gov/gene/816490", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G19710", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G19710", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SYHEPDP", "url": "https://omabrowser.org/oma/group/SYHEPDP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12161:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12161:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03398", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03398", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_179561", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_179561", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G19710", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G19710", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4ITF9", "url": "https://www.uniprot.org/uniprotkb/F4ITF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4ITF9-1", "url": "https://www.uniprot.org/uniprotkb/F4ITF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKVLQRGFKPAKCKTALQMANSRLKILKNKKEIQIKQLRRELAQLLESGQTPTARIRVEHVVREEKTVAAYELIGIYCELLVVRLGVIESQKNCPIDLKEAVTSVLFASQRLSDVPELSEIFKQFTTKYGKDFSTSAVELRPDSGVSRLLVEKLSAKAPDGPTKVKILMAIAEEHNVVWEAQSFVESDPKDTELLNGANSFQPASSMNMDSSINSNKEQPPNIHAPATVNAHHGSSERHHSPENSYANGGRSSSRSNNVTSGKADDYYHSKARPSRSRPDEGECRNPNHGYENSSSRNKQKWEPEFVDSTDAARAAAEAAERASFAARAAAELSNKERMTRQDSTQSHISSASVNLRNEPSHRRDRSNAQRESFSEDHVSPRRNVRMQYEDMDRTRQDRYDRAEQIPPVDQPSGRHSVDNSRNNGSFGREKQPSQDETDINVGYSEDVHLRKQSSRVSSHSHSSNYSDENDLGSDFMKSPSIVEENIFATEYDHQSQSSFKDIDSHDHGHDDDAAATDNYDDYSSFFYQPKFHAEDNHYQDEIDHGVGFSLLGSKTSASAASWSFKGDHSKSHGKHSSSSSQVFQENPSSRLFDDVSTSPPASYHEPDPHAKFDNYGPNSESDGDQPIDKVSGDVHERGNLTSDRSHKFKVSDSAGHEVFPLDTEEHTDNSRTREESDSDSEPQLGLRLGALAGGFRNKKTLPPYRMSSASSKAEKEYIQIDDFGQSSRKDLYSKKASNTETRPSFMPPHPSSSDEDDSDMQHPGRTETKSDSLYSHSRVNHDDSEEEKLPTRSSSRIQERSHKPSTGIRVQKRTNFKMPVSASSEDEEEVEREAARINAKPNKTTGYGFSLRTKGQSKANEKHSLPVTTKKTDKESHDQPSPRTVTSSHVPQTVKSPDPDTPSRERERASHVHPNLPEYDDIFARLGALRAPSRR", "length": 937, "header": "tr|F4ITF9-1|F4ITF9_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL5 PE=1 SV=1 CANONICAL=F4ITF9-1" }, "isoforms": [ { "isoform_ac": "F4ITF9-1", "url": "https://www.uniprot.org/uniprotkb/F4ITF9/entry#F4ITF9-1", "sequence": { "sequence": "MKKVLQRGFKPAKCKTALQMANSRLKILKNKKEIQIKQLRRELAQLLESGQTPTARIRVEHVVREEKTVAAYELIGIYCELLVVRLGVIESQKNCPIDLKEAVTSVLFASQRLSDVPELSEIFKQFTTKYGKDFSTSAVELRPDSGVSRLLVEKLSAKAPDGPTKVKILMAIAEEHNVVWEAQSFVESDPKDTELLNGANSFQPASSMNMDSSINSNKEQPPNIHAPATVNAHHGSSERHHSPENSYANGGRSSSRSNNVTSGKADDYYHSKARPSRSRPDEGECRNPNHGYENSSSRNKQKWEPEFVDSTDAARAAAEAAERASFAARAAAELSNKERMTRQDSTQSHISSASVNLRNEPSHRRDRSNAQRESFSEDHVSPRRNVRMQYEDMDRTRQDRYDRAEQIPPVDQPSGRHSVDNSRNNGSFGREKQPSQDETDINVGYSEDVHLRKQSSRVSSHSHSSNYSDENDLGSDFMKSPSIVEENIFATEYDHQSQSSFKDIDSHDHGHDDDAAATDNYDDYSSFFYQPKFHAEDNHYQDEIDHGVGFSLLGSKTSASAASWSFKGDHSKSHGKHSSSSSQVFQENPSSRLFDDVSTSPPASYHEPDPHAKFDNYGPNSESDGDQPIDKVSGDVHERGNLTSDRSHKFKVSDSAGHEVFPLDTEEHTDNSRTREESDSDSEPQLGLRLGALAGGFRNKKTLPPYRMSSASSKAEKEYIQIDDFGQSSRKDLYSKKASNTETRPSFMPPHPSSSDEDDSDMQHPGRTETKSDSLYSHSRVNHDDSEEEKLPTRSSSRIQERSHKPSTGIRVQKRTNFKMPVSASSEDEEEVEREAARINAKPNKTTGYGFSLRTKGQSKANEKHSLPVTTKKTDKESHDQPSPRTVTSSHVPQTVKSPDPDTPSRERERASHVHPNLPEYDDIFARLGALRAPSRR", "length": 937, "header": "tr|F4ITF9-1|F4ITF9_ARATH Isoform 1 of Regulator of Vps4 activity in the MVB pathway protein OS=Arabidopsis thaliana OX=3702 GN=ISTL5 PE=1 SV=1 CANONICAL=F4ITF9-1" }, "locus": { "chromosome": "2", "start_pos": 8506130, "end_pos": 8510081, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G19710.1", "url": "https://www.ensemblgenomes.org/id/AT2G19710.1" }, { "database": "Ensembl Peptide", "id": "AT2G19710.1", "url": "https://www.ensemblgenomes.org/id/AT2G19710.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 242, "end_pos": 242, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser242" }, { "start_pos": 345, "end_pos": 345, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser345" }, { "start_pos": 346, "end_pos": 346, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr346" }, { "start_pos": 348, "end_pos": 348, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser348" }, { "start_pos": 351, "end_pos": 351, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser351" }, { "start_pos": 374, "end_pos": 374, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", 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598, "end_pos": 598, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser598" }, { "start_pos": 599, "end_pos": 599, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr599" }, { "start_pos": 600, "end_pos": 600, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser600" }, { "start_pos": 617, "end_pos": 617, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Tyr617" }, { "start_pos": 621, "end_pos": 621, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4ITF9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4ITF9" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": 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"id": "ath:AT2G25910", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G25910", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CINDNDY", "url": "https://omabrowser.org/oma/group/CINDNDY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46814", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46814", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46814:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46814:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00013", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00013", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G25910", "url": 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"tr|F4ITY1-1|F4ITY1_ARATH Isoform 1 of DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ITY1-1" }, "locus": { "chromosome": "2", "start_pos": 16221815, "end_pos": 16223746, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G38820.2", "url": "https://www.ensemblgenomes.org/id/AT2G38820.2" }, { "database": "Ensembl Peptide", "id": "AT2G38820.2", "url": "https://www.ensemblgenomes.org/id/AT2G38820.2" } ] } }, { "isoform_ac": "F4ITY2-1", "url": "https://www.uniprot.org/uniprotkb/F4ITY1/entry#F4ITY2-1", "sequence": { "sequence": "MPLHMKIQPIDESDVSEEVPYPETMRQMPKSRLKRLFERQFTNKNVSEKFTGSDVEAPLSRGNSGDFEPSSVCLAKMVLNFMEDNNGGEKQRCGRSRCNCFSGSGTESSDDETECSSGEACEILKSLVLCKSIRVRNLLTDVTKIAETSKNCKLKDGSCLKSVANGLVSLGYDAALCKSRWEKSPSCPAGIVYNSLSSVKRQSCKAKPFLRLLA", "length": 214, "header": "tr|F4ITY2-1|F4ITY2_ARATH Computationally mapped isoform of DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4ITY1-1" }, "locus": { "chromosome": "2", "start_pos": 16221821, "end_pos": 16223743, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G38820.1", "url": "https://www.ensemblgenomes.org/id/AT2G38820.1" }, { "database": "Ensembl Peptide", "id": "AT2G38820.1", "url": "https://www.ensemblgenomes.org/id/AT2G38820.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4ITY1", "url": "https://www.uniprot.org/uniprotkb/F4ITY1" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4ITY1", "url": "https://www.uniprot.org/uniprotkb/F4ITY1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G38820", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G38820", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": 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"https://www.uniprot.org/uniprotkb/F4IU60" } ] } ], "protein_names": [ { "name": "Zinc ion binding protein", "type": "synonym", "evidence": [ { "id": "F4IU60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IU60/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IU60", "url": "https://www.uniprot.org/uniprotkb/F4IU60" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IU60", "locus": {} } ], "crossref": [ { "id": "AT2G44580", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G44580", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "819066", "url": "https://www.ncbi.nlm.nih.gov/gene/819066", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G44580", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G44580", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DSESWPF", "url": "https://omabrowser.org/oma/group/DSESWPF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13395", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13395", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13395:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13395:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09724", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09724", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G44580", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G44580", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IU60", "url": "https://www.uniprot.org/uniprotkb/F4IU60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IU60-1", "url": "https://www.uniprot.org/uniprotkb/F4IU60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEIGGAEAVINLKSGYSLPISYHPCFGPHEDLLLLEADDKLVSDIFHQRVTLRGLPDEDAVLCTKSKTYAIKFVGNSNSMFLIPPSIFPGDAQVSDTNNNVSVLKIAPGNMELVEASPRLDKLKQILLANPFGAGEVEAMMDVDNDDLDHSGKKDLALYTWSDLVNTVQASDEELRNGLQSLSAIEIDGFWRVIDENYLDVILRMLLHNCVLKDWSFDDLDEDEVVNALVADEFPSQLASHCLRVFGSKVNETDKWKLEPRLVCLHFARQILREEKMRLESFMEEWKKKIPDGMEERFEMLEGEVLTEKIGIETRVYTFSVRSLPSTPEERFSVLFKHRSKWEWKDLEPYLRDLHVPRLSMEGLLLKYTRRAQPKADAPPVFSAR", "length": 386, "header": "tr|F4IU60-1|F4IU60_ARATH Isoform 1 of Zinc ion binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IU60-1" }, "isoforms": [ { "isoform_ac": "F4IU60-1", "url": "https://www.uniprot.org/uniprotkb/F4IU60/entry#F4IU60-1", "sequence": { "sequence": "MEEIGGAEAVINLKSGYSLPISYHPCFGPHEDLLLLEADDKLVSDIFHQRVTLRGLPDEDAVLCTKSKTYAIKFVGNSNSMFLIPPSIFPGDAQVSDTNNNVSVLKIAPGNMELVEASPRLDKLKQILLANPFGAGEVEAMMDVDNDDLDHSGKKDLALYTWSDLVNTVQASDEELRNGLQSLSAIEIDGFWRVIDENYLDVILRMLLHNCVLKDWSFDDLDEDEVVNALVADEFPSQLASHCLRVFGSKVNETDKWKLEPRLVCLHFARQILREEKMRLESFMEEWKKKIPDGMEERFEMLEGEVLTEKIGIETRVYTFSVRSLPSTPEERFSVLFKHRSKWEWKDLEPYLRDLHVPRLSMEGLLLKYTRRAQPKADAPPVFSAR", "length": 386, "header": "tr|F4IU60-1|F4IU60_ARATH Isoform 1 of Zinc ion binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IU60-1" }, "locus": { "chromosome": "2", "start_pos": 18401777, "end_pos": 18403654, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G44580.1", "url": "https://www.ensemblgenomes.org/id/AT2G44580.1" }, { "database": "Ensembl Peptide", "id": "AT2G44580.1", "url": "https://www.ensemblgenomes.org/id/AT2G44580.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IU60", "url": "https://www.uniprot.org/uniprotkb/F4IU60" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IU60", "url": "https://www.uniprot.org/uniprotkb/F4IU60" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G44580", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G44580", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y5P3-1", "protein_name": "Sister chromatid cohesion protein DCC1", "gene_name": "DSCC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRSRAEVDATLRTAKLNPAELLPAVHCLSFGPQGGAGECCLLQLEAGLCAELEAGCSLVIRGEKDEQAVLCSKDKTYDVKIADTSNMLLFIPGCRTPEELNADQASCNIIHSQIAGFSNNYWELRRCRPKLKKLRKLLMEDPYEGPDSAKDQTSTVSKYTTEDLLSLIQASEEEILHQLQVIGACVIEGYWRVLEFDYEMKLLNHVTQLIDSESWPFNKVPLRTCLEELGPLEPTEMIEHILSSYGRKYSDDAGEVYFEMREDKICRAIAQMLLKNAVKFNLSEFHEVWQQSVPEGMSTSLDQLKGLALVDKASRPETIFLLKVEDLPEDNQERFNSLFSIREKWTEVDITPYIQDLCAEKQTVGALLTKYARSSVQNGIKVYNSRRPIS", "length": 390 }, "evidence": [ { "id": "F4IU60", "url": "https://omabrowser.org/oma/group/F4IU60/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LJZ0-1", "protein_name": "Sister chromatid cohesion protein DCC1", "gene_name": "Dscc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTRLSPCCGMPGPTAPRRTREEVDATLQVAKLNAAELLPTVHCLSFGSGTSGAATGDFCLLELEPALCQQLEAGDSFVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPGCKTPDQLKGEETQSNIVHTEVPLCPVPESESSVCVPSLPLAENFGYKIFGFSNNYWELRRCRPKLKKLKKLLMENTYEGPDSQKEEDPSRSKYTTEDLLNQIQASEEEIMAQLQVLNACEIGGYWRILEFDYEIKLLNHVTQLVDSESWSFNKVPLNVCLQELGPLEPEEMIEHCLKCYGKKYVDKGEVYFELNADKVCRATAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLKGLALVDRSSRPEIIFLFKVDALPEGTQDRFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYSRSSMQNGVKVYNSRRLIS", "length": 435 }, "evidence": [ { "id": "F4IU60", "url": "https://omabrowser.org/oma/group/F4IU60/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P25559-1", "protein_name": "Sister chromatid cohesion protein DCC1", "gene_name": "DCC1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": 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"GO:0034088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034088", "evidence": [ { "database": "UniProtKB", "id": "F4IU60", "url": "https://www.uniprot.org/uniprotkb/F4IU60" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 252, "end_pos": 254 } ] }, "class_list": 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"MNSSPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINLPGWSTAYLSDEEMLVNGIAREIENKLLRASRTKVMIEWSLVITNLMLEIPSSVFDQISSAHKPLYALAAMSMSLLSCLLCIVDLLHKGRVDRVVWKWTWPIPWFHYQTQRSNRFGSFPEMLGLVCALCQTTITAVNYSFITRRDDTPIKFSVWPIMFALGLLCTLLIKRFR", "length": 313, "header": "tr|F4IUF0-1|F4IUF0_ARATH Isoform 1 of Toll-Interleukin-Resistance (TIR) domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUF0-1" }, "locus": { "chromosome": "2", "start_pos": 8695374, "end_pos": 8696643, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20142.1", "url": "https://www.ensemblgenomes.org/id/AT2G20142.1" }, { "database": "Ensembl Peptide", "id": "AT2G20142.1", "url": "https://www.ensemblgenomes.org/id/AT2G20142.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant 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"length": 1029, "header": "tr|F4IUH2-1|F4IUH2_ARATH Isoform 1 of DENN (AEX-3) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUH2-1" }, "locus": { "chromosome": "2", "start_pos": 8766486, "end_pos": 8772668, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G20320.1", "url": "https://www.ensemblgenomes.org/id/AT2G20320.1" }, { "database": "Ensembl Peptide", "id": "AT2G20320.1", "url": "https://www.ensemblgenomes.org/id/AT2G20320.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 147, "end_pos": 147, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser147" }, { "start_pos": 151, "end_pos": 151, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser151" }, { "start_pos": 210, "end_pos": 210, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser210" }, { "start_pos": 668, "end_pos": 668, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr668" }, { "start_pos": 97, "end_pos": 97, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser97" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IUH2", "url": "https://www.uniprot.org/uniprotkb/F4IUH2" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IUH2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUH2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, 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"https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IUJ2", "url": "https://www.uniprot.org/uniprotkb/F4IUJ2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G26360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G26360", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "S-adenosyl-L-methionine transmembrane transporter activity", "id": "GO:0000095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000095", "evidence": [ { "database": "UniProtKB", "id": "F4IUJ2", "url": "https://www.uniprot.org/uniprotkb/F4IUJ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4IUJ2", "url": "https://www.uniprot.org/uniprotkb/F4IUJ2" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F4IUJ2", "url": "https://www.uniprot.org/uniprotkb/F4IUJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"length": 1249, "header": "tr|F4IUN0-1|F4IUN0_ARATH Isoform 1 of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUN0-1" }, "locus": { "chromosome": "2", "start_pos": 11318771, "end_pos": 11324213, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G26610.1", "url": "https://www.ensemblgenomes.org/id/AT2G26610.1" }, { "database": "Ensembl Peptide", "id": "AT2G26610.1", "url": "https://www.ensemblgenomes.org/id/AT2G26610.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1107, "end_pos": 1107, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUN0" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1107" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IUN0", "url": "https://www.uniprot.org/uniprotkb/F4IUN0" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IUN0", "url": "https://www.uniprot.org/uniprotkb/F4IUN0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4IUN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUN0" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT2G26610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G26610", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54HZ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": 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Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "F4IUS3", "url": "https://www.uniprot.org/uniprotkb/F4IUS3" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4IUS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUS3" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "F4IUS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUS3" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { 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Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4IUS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUS3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IUS3", "url": 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}, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IUT0-1", "uniprot_ac": "F4IUT0", "uniprot_id": "F4IUT0_ARATH", "mass": { "chemical_mass": 79467.0, "monoisotopic_mass": 79467.0 }, "refseq": {}, "gene_names": [ { "name": "T21L14.9", "type": "synonym", "evidence": [ { "id": "F4IUT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUT0" } ] }, { "name": "T21L14_9", "type": "synonym", "evidence": [ { "id": "F4IUT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUT0" } ] } ], "protein_names": [ { "name": "G1/S-specific cyclin-E protein", "type": "synonym", "evidence": [ { "id": "F4IUT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUT0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IUT0", "url": "https://www.uniprot.org/uniprotkb/F4IUT0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IUT0", "locus": {} } ], "crossref": [ { "id": "AT2G32970", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G32970", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "817859", "url": "https://www.ncbi.nlm.nih.gov/gene/817859", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT2G32970", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G32970", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DDAMRNK", "url": "https://omabrowser.org/oma/group/DDAMRNK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34553", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34553", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34553:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34553:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT2G32970", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G32970", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IUT0", "url": "https://www.uniprot.org/uniprotkb/F4IUT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IUT0-1", "url": "https://www.uniprot.org/uniprotkb/F4IUT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48768", "url": "https://www.uniprot.org/uniprotkb/O48768", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48768-1", "url": "https://www.uniprot.org/uniprotkb/O48768-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGIADESKCVFPLTSLQIGDLQSYLSDLSIFLGNKSKKIYILVDNRPWLNPGTRSAHFWQLMVTKSRLSPFANTKLRGEKKNQNQDREKKKSKQEEEEKPKEACSQPQPDDKKMKKLKQWFSLIDATTFSNKKLPAKKLQSSLYLKKQLHKTLYGFIVFEIEWANVRGINYLNELQTDTSLAIEAKLMRRWEFESIDQAVKSMSQWFSGSKAEKSCLREYLDSTIGEVFHDTEMEFSKTTLSDDDDNLSVENDSPCCSRSVFNVNHSAANYDENEPHTPPLTGPYKRRRVTKAISTGVEVDYMEETPRRKDNSVDHWESHVPDCDNIIEATQYKDVLVLVRCGDRDLPFKLREVIMADIRLLTLLEAGLPSWVLFLQSYPGFCHLYRPWMCHFARALYVMISVITVVIGFYDLYKNVPVLKATASRLCGPLFDWVETWDMVSRIKYLGTMLFLHNFQKAVKWALTMARAMQSFVSFCIMPLVNPLLDILELLLPLWNSLAETVASLVSVVWIVMESGCNLVGDVVELVLLPISLVWNVTNTVLLPLFWIIWEVVYAPIRVVAALANCLAVSFSYIFDVIGDLWRYMSSILQLASDSQAAVKTYEVSMWRTLWNDLFSHVFRAVRSILNGFVAFFAACNRHRLSTYNHIQEFMERVHGRTTRPESIDSRHGKSVKNNQRTGDETRRKLHLA", "length": 690, "header": "tr|F4IUT0-1|F4IUT0_ARATH Isoform 1 of G1/S-specific cyclin-E protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUT0-1" }, "isoforms": [ { "isoform_ac": "F4IUT0-1", "url": "https://www.uniprot.org/uniprotkb/F4IUT0/entry#F4IUT0-1", "sequence": { "sequence": "MGIADESKCVFPLTSLQIGDLQSYLSDLSIFLGNKSKKIYILVDNRPWLNPGTRSAHFWQLMVTKSRLSPFANTKLRGEKKNQNQDREKKKSKQEEEEKPKEACSQPQPDDKKMKKLKQWFSLIDATTFSNKKLPAKKLQSSLYLKKQLHKTLYGFIVFEIEWANVRGINYLNELQTDTSLAIEAKLMRRWEFESIDQAVKSMSQWFSGSKAEKSCLREYLDSTIGEVFHDTEMEFSKTTLSDDDDNLSVENDSPCCSRSVFNVNHSAANYDENEPHTPPLTGPYKRRRVTKAISTGVEVDYMEETPRRKDNSVDHWESHVPDCDNIIEATQYKDVLVLVRCGDRDLPFKLREVIMADIRLLTLLEAGLPSWVLFLQSYPGFCHLYRPWMCHFARALYVMISVITVVIGFYDLYKNVPVLKATASRLCGPLFDWVETWDMVSRIKYLGTMLFLHNFQKAVKWALTMARAMQSFVSFCIMPLVNPLLDILELLLPLWNSLAETVASLVSVVWIVMESGCNLVGDVVELVLLPISLVWNVTNTVLLPLFWIIWEVVYAPIRVVAALANCLAVSFSYIFDVIGDLWRYMSSILQLASDSQAAVKTYEVSMWRTLWNDLFSHVFRAVRSILNGFVAFFAACNRHRLSTYNHIQEFMERVHGRTTRPESIDSRHGKSVKNNQRTGDETRRKLHLA", "length": 690, "header": "tr|F4IUT0-1|F4IUT0_ARATH Isoform 1 of G1/S-specific cyclin-E protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUT0-1" }, "locus": { "chromosome": "2", "start_pos": 13991317, "end_pos": 13995905, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G32970.2", "url": "https://www.ensemblgenomes.org/id/AT2G32970.2" }, { "database": "Ensembl Peptide", "id": "AT2G32970.2", "url": "https://www.ensemblgenomes.org/id/AT2G32970.2" } ] } }, { "isoform_ac": "O48768-1", "url": "https://www.uniprot.org/uniprotkb/F4IUT0/entry#O48768-1", "sequence": { "sequence": "MKKLKQWFSLIDATTFSNKKLPAKKLQSSLYLKKQLHKTLYGFIVFEIEWANVRGINYLNELQTDTSLAIEAKLMRRWEFESIDQAVKSMSQWFSGSKAEKSCLREYLDSTIGEVFHDTEMEFSKTTLSDDDDNLSVENDSPCCSRSVFNVNHSAANYDENEPHTPPLTGPYKRRRVTKAISTGVEVDYMEETPRRKDNSVDHWESHVPDCDNIIEATQYKDVLVLVRCGDRDLPFKLREVIMADIRLLTLLEAGLPSWVLFLQSYPGFCHLYRPWMCHFARALYVMISVITVVIGFYDLYKNVPVLKATASRLCGPLFDWVETWDMVSRIKYLGTMLFLHNFQKAVKWALTMARAMQSFVSFCIMPLVNPLLDILELLLPLWNSLAETVASLVSVVWIVMESGCNLVGDVVELVLLPISLVWNVTNTVLLPLFWIIWEVVYAPIRVVAALANCLAVSFSYIFDVIGDLWRYMSSILQLASDSQAAVKTYEVSMWRTLWNDLFSHVFRAVRSILNGFVAFFAACNRHRLSTYNHIQEFMERVHGRTTRPESIDSRHGKSVKNNQRTGDETRRKLHLA", "length": 577, "header": "tr|O48768-1|F4IUT0_ARATH Computationally mapped isoform of G1/S-specific cyclin-E protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUT0-1" }, "locus": { "chromosome": "2", "start_pos": 13991448, "end_pos": 13995749, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G32970.1", "url": "https://www.ensemblgenomes.org/id/AT2G32970.1" }, { "database": "Ensembl Peptide", "id": "AT2G32970.1", "url": "https://www.ensemblgenomes.org/id/AT2G32970.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "O48768", "url": "https://www.uniprot.org/uniprotkb/O48768" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "O48768", "url": "https://www.uniprot.org/uniprotkb/O48768" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G32970", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G32970", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 247, "end_pos": 249, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" }, { "start_pos": 537, "end_pos": 539, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 247, "end_pos": 249 }, { "start_pos": 252, "end_pos": 254 }, { "start_pos": 265, "end_pos": 267 }, { "start_pos": 34, "end_pos": 36 }, { "start_pos": 537, "end_pos": 539 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IUX9-1", "uniprot_ac": "F4IUX9", "uniprot_id": "F4IUX9_ARATH", "mass": { "chemical_mass": 87201.0, "monoisotopic_mass": 87201.0 }, "refseq": {}, "gene_names": [ { "name": "T16B24.8", "type": "synonym", "evidence": [ { "id": "F4IUX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUX9" } ] }, { "name": "T16B24_8", "type": "synonym", "evidence": [ { "id": "F4IUX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUX9" } ] } ], "protein_names": [ { "name": "Ypt/Rab-GAP domain of gyp1p superfamily protein", "type": "synonym", "evidence": [ { "id": "F4IUX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUX9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IUX9", "url": "https://www.uniprot.org/uniprotkb/F4IUX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IUX9", "locus": {} } ], "crossref": [ { "id": "F4IUX9", "url": "https://alphafold.ebi.ac.uk/entry/F4IUX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G39280", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G39280", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "818513", "url": "https://www.ncbi.nlm.nih.gov/gene/818513", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G39280", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G39280", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GYQDVHE", "url": "https://omabrowser.org/oma/group/GYQDVHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT2G39280", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G39280", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IUX8", "url": "https://www.uniprot.org/uniprotkb/F4IUX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IUX8-1", "url": "https://www.uniprot.org/uniprotkb/F4IUX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IUX9", "url": "https://www.uniprot.org/uniprotkb/F4IUX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IUX9-1", "url": "https://www.uniprot.org/uniprotkb/F4IUX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIADAVSKSDHKRYRLSSFSIATLLISLLLREVNEVGFMNRDAYGFSVRPQHVQRYREYVNIYKEEEVERSARWSNFLEFHAESGVSPTNGSSENTHVNPSESDKKKEKELNKGAERKDLNADKPGSDLTPGNAREEDEVPNREKNVHKVQLWAEIRPSLQAIEDLMSVRVKMKGDSTNGEQEAQKLNSLASTDETESSKGVCENDSEDEFYDAERSDPIQDGSSDGTSVSSMSAAADAASLVSACPWKDELEVLIHGGAPMALRGELWQAFAGVKKRRVKNYYQNLLAADSLGNDIEQELMQHTDEKGSSTDPLSVVEKWKGQIEKDLPRTFPGHPALDDDFRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWSLTGIIDDYFHDYYSEEMLESQVDQRVLEELLRERFPKLVHHLDYLGVQVACVTGPWFLTIFINMLPWESVLRVWDVLLFEGNRVMLFRTALALMEFYGPALVTTKDIGDAVTLLQSMTGSTFDSSQLVFTACMGYQNVHESKLQELRSKHRPAVIAAFEERLKGLQAWRDSKDTATKLHNSKQDPNSVLASKASLSNGSLSRSESGSSYADDIFISLTGDCEIDIFQDLQGQGELHKLLQEKRSALLRAEELEVALMEMVKQDNRRQLKAKIEQLEQGVTELRRLVSDKREQESAMIQVLMRMEQEHKVTEDARRLAEQDAATQRYAAEVLQEKYEEAVAALAEMEERAVMAESMLEATLQYQSGQVKAQPSPRQLKQDLPVMVSP", "length": 772, "header": "tr|F4IUX9-1|F4IUX9_ARATH Isoform 1 of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUX9-1" }, "isoforms": [ { "isoform_ac": "F4IUX8-1", "url": "https://www.uniprot.org/uniprotkb/F4IUX9/entry#F4IUX8-1", "sequence": { "sequence": "MIADAVSKSDHKRDAYGFSVRPQHVQRYREYVNIYKEEEVERSARWSNFLEFHAESGVSPTNGSSENTHVNPSESDKKKEKELNKGAERKDLNADKPGSDLTPGNAREEDEVPNREKNVHKVQLWAEIRPSLQAIEDLMSVRVKMKGDSTNGEQEAQKLNSLASTDETESSKGVCENDSEDEFYDAERSDPIQDGSSDGTSVSSMSAAADAASLVSACPWKDELEVLIHGGAPMALRGELWQAFAGVKKRRVKNYYQNLLAADSLGNDIEQELMQHTDEKGSSTDPLSVVEKWKGQIEKDLPRTFPGHPALDDDFRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWSLTGIIDDYFHDYYSEEMLESQVDQRVLEELLRERFPKLVHHLDYLGVQVACVTGPWFLTIFINMLPWESVLRVWDVLLFEGNRVMLFRTALALMEFYGPALVTTKDIGDAVTLLQSMTGSTFDSSQLVFTACMGYQNVHESKLQELRSKHRPAVIAAFEERLKGLQAWRDSKDTATKLHNSKQDPNSVLASKASLSNGSLSRSESGSSYADDIFISLTGDCEIDIFQDLQGQVLWLKGELHKLLQEKRSALLRAEELEVALMEMVKQDNRRQLKAKIEQLEQGVTELRRLVSDKREQESAMIQVLMRMEQEHKVTEDARRLAEQDAATQRYAAEVLQEKYEEAVAALAEMEERAVMAESMLEATLQYQSGQVKAQPSPRQLKQDLPVMVSP", "length": 749, "header": "tr|F4IUX8-1|F4IUX9_ARATH Computationally mapped isoform of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUX9-1" }, "locus": { "chromosome": "2", "start_pos": 16401587, "end_pos": 16406886, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G39280.1", "url": "https://www.ensemblgenomes.org/id/AT2G39280.1" }, { "database": "Ensembl Peptide", "id": "AT2G39280.1", "url": "https://www.ensemblgenomes.org/id/AT2G39280.1" } ] } }, { "isoform_ac": "F4IUX9-1", "url": "https://www.uniprot.org/uniprotkb/F4IUX9/entry#F4IUX9-1", "sequence": { "sequence": "MIADAVSKSDHKRYRLSSFSIATLLISLLLREVNEVGFMNRDAYGFSVRPQHVQRYREYVNIYKEEEVERSARWSNFLEFHAESGVSPTNGSSENTHVNPSESDKKKEKELNKGAERKDLNADKPGSDLTPGNAREEDEVPNREKNVHKVQLWAEIRPSLQAIEDLMSVRVKMKGDSTNGEQEAQKLNSLASTDETESSKGVCENDSEDEFYDAERSDPIQDGSSDGTSVSSMSAAADAASLVSACPWKDELEVLIHGGAPMALRGELWQAFAGVKKRRVKNYYQNLLAADSLGNDIEQELMQHTDEKGSSTDPLSVVEKWKGQIEKDLPRTFPGHPALDDDFRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWSLTGIIDDYFHDYYSEEMLESQVDQRVLEELLRERFPKLVHHLDYLGVQVACVTGPWFLTIFINMLPWESVLRVWDVLLFEGNRVMLFRTALALMEFYGPALVTTKDIGDAVTLLQSMTGSTFDSSQLVFTACMGYQNVHESKLQELRSKHRPAVIAAFEERLKGLQAWRDSKDTATKLHNSKQDPNSVLASKASLSNGSLSRSESGSSYADDIFISLTGDCEIDIFQDLQGQGELHKLLQEKRSALLRAEELEVALMEMVKQDNRRQLKAKIEQLEQGVTELRRLVSDKREQESAMIQVLMRMEQEHKVTEDARRLAEQDAATQRYAAEVLQEKYEEAVAALAEMEERAVMAESMLEATLQYQSGQVKAQPSPRQLKQDLPVMVSP", "length": 772, "header": "tr|F4IUX9-1|F4IUX9_ARATH Isoform 1 of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IUX9-1" }, "locus": { "chromosome": "2", "start_pos": 16401526, "end_pos": 16406854, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G39280.2", "url": "https://www.ensemblgenomes.org/id/AT2G39280.2" }, { "database": "Ensembl Peptide", "id": "AT2G39280.2", "url": "https://www.ensemblgenomes.org/id/AT2G39280.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 207, "end_pos": 207, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUX8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUX8" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "F4IUX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUX9" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser207" }, { "start_pos": 587, "end_pos": 587, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUX9" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser587" }, { "start_pos": 771, "end_pos": 771, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IUX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUX9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser771" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IUX8", "url": "https://www.uniprot.org/uniprotkb/F4IUX8" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4IUX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUX9" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4IUX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUX9" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4IUX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUX9" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4IUX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUX9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IUX9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IUX9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IUX8", "url": "https://www.uniprot.org/uniprotkb/F4IUX8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G39280", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G39280", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4IUX9", "url": "https://www.uniprot.org/uniprotkb/F4IUX9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IUX9", "url": "https://www.uniprot.org/uniprotkb/F4IUX9" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4IUX9", "url": "https://www.uniprot.org/uniprotkb/F4IUX9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F4IUX9", "url": "https://www.uniprot.org/uniprotkb/F4IUX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 583, "end_pos": 585, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IUX9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 772, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IUX9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IUX9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IUX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IUX9" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 259, "end_pos": 467, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 207, 587, 771 ], "sequon_annotation_sites": [ { "start_pos": 205, "end_pos": 207 }, { "start_pos": 583, "end_pos": 585 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IV00-1", "uniprot_ac": "F4IV00", "uniprot_id": "F4IV00_ARATH", "mass": { "chemical_mass": 52890.0, "monoisotopic_mass": 52890.0 }, "refseq": { "ac": "NP_001189712", "name": "Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189712" }, "gene_names": [ { "name": "TRM18", "type": 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"synonym", "evidence": [ { "id": "NP_001189712", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189712" }, { "id": "F4IV00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV00/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IV00", "url": "https://www.uniprot.org/uniprotkb/F4IV00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "TRM18", "url": "https://www.uniprot.org/uniprotkb/F4IV00", "locus": { "chromosome": "CP002685.1", "start_pos": 16464414, "end_pos": 16467033, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT2G39435", "url": "https://www.ensemblgenomes.org/id/AT2G39435" } ] } } ], "crossref": [ { "id": "F4IV00", "url": "https://alphafold.ebi.ac.uk/entry/F4IV00", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G39435", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G39435", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd09271", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09271", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "6241019", "url": "https://www.ncbi.nlm.nih.gov/gene/6241019", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "818529", "url": "https://www.ncbi.nlm.nih.gov/gene/818529", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013924", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013924", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025486", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025486", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G39435", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G39435", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ath:AT2G39440", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G39440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SQFTYWN", "url": "https://omabrowser.org/oma/group/SQFTYWN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "TNSEEAH", "url": "https://omabrowser.org/oma/group/TNSEEAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4IVV8", "url": "https://www.orthodb.org/?gene=F4IVV8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46836", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46836", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46836:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46836:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47204", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47204", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47204:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47204:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14309", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14309", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001189712", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189712", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G39435", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G39435", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "AT2G39440", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G39440", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IV00", "url": "https://www.uniprot.org/uniprotkb/F4IV00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IV00-1", "url": "https://www.uniprot.org/uniprotkb/F4IV00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IVV8", "url": "https://www.uniprot.org/uniprotkb/F4IVV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IVV8-1", "url": "https://www.uniprot.org/uniprotkb/F4IVV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESKEIRSSSVFERSMRFNGLFQDKLRVVEKQNQPPKRFNQKESNSGFTVIPTKQLCRVYLQKPNLLASKGIIDALAKPPHRIFGRRYDQQNFKSKLRHLHTTSIDPLKHKFGKEENSLRYFTPLGFSSGSRLGDRKKGKDLSFQEEKPKEMKKLCDQKKERVVREVKSSLVVSTSRDRVAADVKFRDLSSSGFISKDINAESVDCSHGSPECQTNSEDAHQPSPVSVLEPMFYEDNLDDSEDILDDSEDLPYPNFLSLENQLETLKSESESYSDGSGMEVSSDEESALDSAIKESKESEPIGFLDTQESRDSSYIDDILAEVLLGDKNCVPGKRDLVITPKIFEKLEKKYYTETSWKRSDRKILFDRVNSSLVEILESFSATPTWKKPVSRRLGTALSTCGLKQELWKVLSRQEKRSKKKSLAKVPVIDIDEWLELEADDESVVCELEKIKFAQQRKKAPSGS", "length": 464, "header": "tr|F4IV00-1|F4IV00_ARATH Isoform 1 of Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein OS=Arabidopsis thaliana OX=3702 GN=TRM18 PE=4 SV=1 CANONICAL=F4IV00-1" }, "isoforms": [ { "isoform_ac": "F4IV00-1", "url": "https://www.uniprot.org/uniprotkb/F4IV00/entry#F4IV00-1", "sequence": { "sequence": "MESKEIRSSSVFERSMRFNGLFQDKLRVVEKQNQPPKRFNQKESNSGFTVIPTKQLCRVYLQKPNLLASKGIIDALAKPPHRIFGRRYDQQNFKSKLRHLHTTSIDPLKHKFGKEENSLRYFTPLGFSSGSRLGDRKKGKDLSFQEEKPKEMKKLCDQKKERVVREVKSSLVVSTSRDRVAADVKFRDLSSSGFISKDINAESVDCSHGSPECQTNSEDAHQPSPVSVLEPMFYEDNLDDSEDILDDSEDLPYPNFLSLENQLETLKSESESYSDGSGMEVSSDEESALDSAIKESKESEPIGFLDTQESRDSSYIDDILAEVLLGDKNCVPGKRDLVITPKIFEKLEKKYYTETSWKRSDRKILFDRVNSSLVEILESFSATPTWKKPVSRRLGTALSTCGLKQELWKVLSRQEKRSKKKSLAKVPVIDIDEWLELEADDESVVCELEKIKFAQQRKKAPSGS", "length": 464, "header": "tr|F4IV00-1|F4IV00_ARATH Isoform 1 of Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein OS=Arabidopsis thaliana OX=3702 GN=TRM18 PE=4 SV=1 CANONICAL=F4IV00-1" }, "locus": { "chromosome": "2", "start_pos": 16464414, "end_pos": 16466941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G39435.2", "url": "https://www.ensemblgenomes.org/id/AT2G39435.2" }, { "database": "Ensembl Peptide", "id": "AT2G39435.2", "url": "https://www.ensemblgenomes.org/id/AT2G39435.2" } ] } }, { "isoform_ac": "F4IVV8-1", "url": "https://www.uniprot.org/uniprotkb/F4IV00/entry#F4IVV8-1", "sequence": { "sequence": "MGTIDFRAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGRKLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPSKDDTFFRSFHWFSIAEALHKPVKVEDLVAVSHGGKNKI", "length": 162, "header": "tr|F4IVV8-1|F4IVV8_ARATH Computationally mapped isoform of Ribonuclease H2 subunit C-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IV00-1" }, "locus": { "chromosome": "2", "start_pos": 16467855, "end_pos": 16469628, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G39440.2", "url": "https://www.ensemblgenomes.org/id/AT2G39440.2" }, { "database": "Ensembl Peptide", "id": "AT2G39440.2", "url": "https://www.ensemblgenomes.org/id/AT2G39440.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 391, "end_pos": 391, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IVV8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IVV8" } ], "site_lbl": "Ser391" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IV00", "url": "https://www.uniprot.org/uniprotkb/F4IV00" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IV00", "url": "https://www.uniprot.org/uniprotkb/F4IV00" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G39435", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G39435", "resource": "KEGG Pathway" }, { "id": "ath:AT2G39440", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G39440", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IV00", "url": "https://www.uniprot.org/uniprotkb/F4IV00" } ], "pmid": "" }, { "name": "ribonuclease H2 complex", "id": "GO:0032299", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032299", "evidence": [ { "database": "UniProtKB", "id": "F4IV00", "url": "https://www.uniprot.org/uniprotkb/F4IV00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "RNA catabolic process", "id": "GO:0006401", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006401", "evidence": [ { "database": "UniProtKB", "id": "F4IV00", "url": "https://www.uniprot.org/uniprotkb/F4IV00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IV00-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 464, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IV00-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IV00" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IV00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV00" }, { "id": "PF14309", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14309" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LONGIFOLIA 1/2-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 313, "end_pos": 450, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 391 ], "sequon_annotation_sites": [ { "start_pos": 370, "end_pos": 372 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IV13-1", "uniprot_ac": "F4IV13", "uniprot_id": "F4IV13_ARATH", "mass": { "chemical_mass": 42301.0, "monoisotopic_mass": 42301.0 }, "refseq": { "ac": "NP_850423", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850423" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "F4IV13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IV13/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_850423", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850423" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IV13", "url": "https://www.uniprot.org/uniprotkb/F4IV13" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IV13", "locus": {} } ], "crossref": [ { "id": "F4IV13", "url": "https://alphafold.ebi.ac.uk/entry/F4IV13", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT2G44735", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT2G44735", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "819081", "url": "https://www.ncbi.nlm.nih.gov/gene/819081", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { 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thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "O22166", "url": "https://www.uniprot.org/uniprotkb/O22166" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G44850", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G44850", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4IV28", "url": "https://www.uniprot.org/uniprotkb/F4IV28" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": 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] }, { "id": "FMLANAM", "url": "https://omabrowser.org/oma/group/FMLANAM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31232:SF113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31232:SF113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05938", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05938", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001189509", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189509", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G04115", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G04115", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IV52", "url": 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"MFSHRRFRFNRCFAMSGDCLVNLLALLVVCLVILTSDVSYAIVPGRQYDLLWAFRSLTQILSDLICHHRPARKPPWRQYVEEELEANRRIRRWFIPYQQKWGLRKTKINDISFYMRVSINSKVLRCNRWIAAYDFRMRYRYFIYKKKMIPKQESHTKLTEMMKTIKYLIKYLIKKAERNLLYRFFIT", "length": 187, "header": "tr|F4IVQ7-1|F4IVQ7_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4IVQ7-1" }, "locus": { "chromosome": "2", "start_pos": 14062699, "end_pos": 14063623, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G33175.1", "url": "https://www.ensemblgenomes.org/id/AT2G33175.1" }, { "database": "Ensembl Peptide", "id": "AT2G33175.1", "url": "https://www.ensemblgenomes.org/id/AT2G33175.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, Town C D, Fujii C Y, Mason T, Bowman C L, Barnstead M, Feldblyum T V, Buell C R, Ketchum K A, Lee J, Ronning C M, Koo H L, Moffat K S, Cronin L A, Shen M, Pai G, Van Aken S, Umayam L, Tallon L J, Gill J E, Adams M D, Carrera A J, Creasy T H, Goodman H M, Somerville C R, Copenhaver G P, Preuss D, Nierman W C, White O, Eisen J A, Salzberg S L, Fraser C M, Venter J C", "evidence": [ { "database": "UniProtKB", "id": "F4IVQ7", "url": "https://www.uniprot.org/uniprotkb/F4IVQ7" } ], "reference": [ { "type": "PubMed", "id": "10617197", "url": "https://glygen.org/publication/PubMed/10617197" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IVQ7", "url": "https://www.uniprot.org/uniprotkb/F4IVQ7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT2G33175", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G33175", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4IVQ7", "url": "https://www.uniprot.org/uniprotkb/F4IVQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IVQ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 187, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IVQ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IVQ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IVU7-1", "uniprot_ac": "F4IVU7", "uniprot_id": "F4IVU7_ARATH", "mass": { "chemical_mass": 149840.0, "monoisotopic_mass": 149840.0 }, "refseq": { "ac": "NP_001318342", "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318342" }, "gene_names": [], "protein_names": [ { "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "type": "synonym", "evidence": [ { "id": "NP_001318342", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318342" }, { "id": "F4IVU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IVU7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IVU7", "url": "https://www.uniprot.org/uniprotkb/F4IVU7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IVU7", "locus": {} } ], "crossref": [ { "id": "F4IVU7", "url": "https://alphafold.ebi.ac.uk/entry/F4IVU7", "database": "AlphaFoldDB", "categories": [] }, { "id": "817909", "url": "https://www.ncbi.nlm.nih.gov/gene/817909", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT2G33435", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT2G33435", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RKEDHVG", "url": "https://omabrowser.org/oma/group/RKEDHVG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23139", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23139", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001318342", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001318342", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT2G33435", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT2G33435", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IVU7", "url": "https://www.uniprot.org/uniprotkb/F4IVU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IVU7-1", "url": "https://www.uniprot.org/uniprotkb/F4IVU7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNEVNKQKENRDGHETLVNEEGSAARTRPTSVEEIRLRRKRKESLENVKEETVGAAQLLGYDLVEKASDYHESKNLRREEHVEDSSRKEKEAISRCREEKIEKPMKEDPVGAAQLPDKNLVEKVLDCHESEKGYDRSEKLSHEELVMDSSRKKEEAISSSREEKLDKPIKDDLVGTAQLLGNDLVEKVPEYHVSEKEHDGSKNVRREERVKDSLRKKEDITSSSRDETPMKEDHVGAAQLRGNDIVEKVSDNHASEKGHDKSNKVRREEHVKDSSRKKEDYISSFREEKSRKEDHVGAAMLLGHDIVDKFSDYHASEKRHDRSKKVRRDEHVKESSRKKEDATSGSTEEKSMKEDHAGAAQLLGHDIVEKVSDYHASEKGHDRSTKVRREERVKDSSRKKEDATSGSREERVDNSTKEDPVGAAQLLGNDFVEKVSDYHTSERGHERSKKVRREERVKDNSRKKEEAISSSRGEKPIKEDHVGAAQLLGNDLVEMVSDYHETEKGYDRSKKLSREERVKDSSRKKEEAISSSREENLDKQKKDESTSNRKRKAEGECSTAETESIEEHSKDRRGKKEETNSNCREERRDKKMKKEDLASNRKIEGEIPTTETKTMTDRDGLCSKKRLRSLVVADVPRDESSIKPDNGDKRKNQNGNHKKNREINMSKRHDPGKVHSVEVSERWERREQPKSRQRDLREKRRRSRSRDHGQDRQKRSSPLPRAEKATSRHKRNHEERSENVVKDRSGKHHCNDNEDKVTSTVSNKSRRYSASKSELGGYSPRKRREQASTKAASPPNLSSEKKSAKWGLAATVTAGMFSDSVFSGLQAATQTAYPTISEASLTLLKPLMVMDAPFRTPPARQTTSFDSVQLTESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEFLTPQDASAALSLDGCSFAGSNLKIRRPKDYVRTTNGELEKKEPAANAVSDNVEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLKACAGLNGMRLGGSVITAVCAFPDASSVAVNENPPFYGIPSHAKPLLGKPKNILKLKNVVDPEDLTSFSEQEVKEILEDVRLECARFGVIKSINILEHKSKDITVSETNPLLNLESTDSKEMNVSVIEEKDEGSEKAEDIADNVDLAEVVMPDSLTGEDKLCEPCSDTAAETSTQENEDLHSTEQEHCEKIVEESAQAEAENPQEVASVRTVKTRWDAGDKIEEEQEEDPEDVFETGCIFIEYRRPEATCDAAHSLHGRLYDNRIVKAEYVSKELYQIRFPSG", "length": 1325, "header": "tr|F4IVU7-1|F4IVU7_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IVU7-1" }, "isoforms": [ { "isoform_ac": "F4IVU7-1", "url": "https://www.uniprot.org/uniprotkb/F4IVU7/entry#F4IVU7-1", "sequence": { "sequence": "MNEVNKQKENRDGHETLVNEEGSAARTRPTSVEEIRLRRKRKESLENVKEETVGAAQLLGYDLVEKASDYHESKNLRREEHVEDSSRKEKEAISRCREEKIEKPMKEDPVGAAQLPDKNLVEKVLDCHESEKGYDRSEKLSHEELVMDSSRKKEEAISSSREEKLDKPIKDDLVGTAQLLGNDLVEKVPEYHVSEKEHDGSKNVRREERVKDSLRKKEDITSSSRDETPMKEDHVGAAQLRGNDIVEKVSDNHASEKGHDKSNKVRREEHVKDSSRKKEDYISSFREEKSRKEDHVGAAMLLGHDIVDKFSDYHASEKRHDRSKKVRRDEHVKESSRKKEDATSGSTEEKSMKEDHAGAAQLLGHDIVEKVSDYHASEKGHDRSTKVRREERVKDSSRKKEDATSGSREERVDNSTKEDPVGAAQLLGNDFVEKVSDYHTSERGHERSKKVRREERVKDNSRKKEEAISSSRGEKPIKEDHVGAAQLLGNDLVEMVSDYHETEKGYDRSKKLSREERVKDSSRKKEEAISSSREENLDKQKKDESTSNRKRKAEGECSTAETESIEEHSKDRRGKKEETNSNCREERRDKKMKKEDLASNRKIEGEIPTTETKTMTDRDGLCSKKRLRSLVVADVPRDESSIKPDNGDKRKNQNGNHKKNREINMSKRHDPGKVHSVEVSERWERREQPKSRQRDLREKRRRSRSRDHGQDRQKRSSPLPRAEKATSRHKRNHEERSENVVKDRSGKHHCNDNEDKVTSTVSNKSRRYSASKSELGGYSPRKRREQASTKAASPPNLSSEKKSAKWGLAATVTAGMFSDSVFSGLQAATQTAYPTISEASLTLLKPLMVMDAPFRTPPARQTTSFDSVQLTESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEFLTPQDASAALSLDGCSFAGSNLKIRRPKDYVRTTNGELEKKEPAANAVSDNVEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLKACAGLNGMRLGGSVITAVCAFPDASSVAVNENPPFYGIPSHAKPLLGKPKNILKLKNVVDPEDLTSFSEQEVKEILEDVRLECARFGVIKSINILEHKSKDITVSETNPLLNLESTDSKEMNVSVIEEKDEGSEKAEDIADNVDLAEVVMPDSLTGEDKLCEPCSDTAAETSTQENEDLHSTEQEHCEKIVEESAQAEAENPQEVASVRTVKTRWDAGDKIEEEQEEDPEDVFETGCIFIEYRRPEATCDAAHSLHGRLYDNRIVKAEYVSKELYQIRFPSG", "length": 1325, "header": "tr|F4IVU7-1|F4IVU7_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IVU7-1" }, "locus": { "chromosome": "2", "start_pos": 14165125, "end_pos": 14173509, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT2G33435.1", "url": "https://www.ensemblgenomes.org/id/AT2G33435.1" }, { "database": "Ensembl Peptide", "id": "AT2G33435.1", "url": "https://www.ensemblgenomes.org/id/AT2G33435.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 545, "end_pos": 545, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IVU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IVU7" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser545" }, { "start_pos": 547, "end_pos": 547, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IVU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IVU7" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser547" }, { "start_pos": 666, "end_pos": 666, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IVU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IVU7" } ], "site_lbl": "Ser666" }, { "start_pos": 717, "end_pos": 717, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IVU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IVU7" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser717" }, { "start_pos": 779, "end_pos": 779, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IVU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IVU7" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser779" }, { "start_pos": 793, "end_pos": 793, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IVU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IVU7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser793" }, { "start_pos": 798, 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Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, 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Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, 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CANONICAL=F4IWK7-1" }, "isoforms": [ { "isoform_ac": "F4IWK7-1", "url": "https://www.uniprot.org/uniprotkb/F4IWK7/entry#F4IWK7-1", "sequence": { "sequence": "MWFHFTVLKIVKDFKEVGGSYDRGASMPHMDARGLPATARGRRLSSSSGVFYYFALLISSSRVQERNQRIHSSSQKTSLTIVKEIKVILKARLDPLARAQRLARPGSSVLSTWFRLFG", "length": 118, "header": "tr|F4IWK7-1|F4IWK7_ARATH Isoform 1 of Reverse transcriptase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IWK7-1" }, "locus": { "chromosome": "3", "start_pos": 10220326, "end_pos": 10221857, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G27590.1", "url": "https://www.ensemblgenomes.org/id/AT3G27590.1" }, { "database": "Ensembl Peptide", "id": "AT3G27590.1", "url": "https://www.ensemblgenomes.org/id/AT3G27590.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": 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H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4IWK7", "url": "https://www.uniprot.org/uniprotkb/F4IWK7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan 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"MASYISTGGLVVEKVMRYLVVGDARYNFMGISDPFHPFYQQRLTQYRSLNQQDEANLDYDATLAAYMRKATEFRSRIQQEGPNLDDDDADAGQRIVLPHLLDYRLPKGMSVKNLELSSSQHSLGLGFKERDGFEFTNPTDSKFPRFTLFVLEYSEVFKAPKDLKEKWDSLHDVKWRDGGVMSMVNWHASFEKEFFANNEELPPPEITETGWCIIMISVVDVDGRELNIIEKTVQSLSENVASFKEKIAADKPKNPTREAGDIRKIRVVKGQQQVTSILKCRSRRNPHFVILYVWEIDRFGQALFMHGNVFRRT", "length": 313, "header": "tr|F4IWK8-1|F4IWK8_ARATH Isoform 1 of SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IWK8-1" }, "locus": { "chromosome": "3", "start_pos": 10223743, "end_pos": 10224948, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G27600.1", "url": "https://www.ensemblgenomes.org/id/AT3G27600.1" }, { "database": "Ensembl Peptide", "id": "AT3G27600.1", "url": "https://www.ensemblgenomes.org/id/AT3G27600.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 26, "end_pos": 26, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", 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"https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Tyr46" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4IWK8", "url": "https://www.uniprot.org/uniprotkb/F4IWK8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4IWK8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IWK8" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IWK8", "url": "https://www.uniprot.org/uniprotkb/F4IWK8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G27600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G27600", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F4IWK8", "url": "https://www.uniprot.org/uniprotkb/F4IWK8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IWK8", "url": "https://www.uniprot.org/uniprotkb/F4IWK8" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IWM0-1", "uniprot_ac": "F4IWM0", "uniprot_id": "F4IWM0_ARATH", "mass": { "chemical_mass": 94137.0, "monoisotopic_mass": 94137.0 }, "refseq": { "ac": "NP_683651", "name": "ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683651" }, "gene_names": [], "protein_names": [ { "name": "ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein", "type": "synonym", "evidence": [ { "id": "NP_683651", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683651" }, { "id": "F4IWM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IWM0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IWM0", "url": "https://www.uniprot.org/uniprotkb/F4IWM0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IWM0", "locus": {} } ], "crossref": [ { "id": "F4IWM0", "url": "https://alphafold.ebi.ac.uk/entry/F4IWM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G42723", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G42723", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "823303", "url": "https://www.ncbi.nlm.nih.gov/gene/823303", 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"https://www.uniprot.org/uniprotkb/F4IWM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATQAAQAITVTDLEAILDRFVEKLEEKLDSVVQRLQAQQEEYRRGIREIFAKFFPKLLPILGSQSFQRRCILAGEEEPMLHKLAGEDLFLLIRAIIRPRSSWLDSTVPFPRLLVARQESHRRSFSGYYGSDSQESSDGVVSRRKSWERKRYRESKDGDIRSSEQSARNGSLFWTNSKKAWEQVGLDSQEKNDNAADSIRVLYIGFQGTAPQVAMEVEHDIISRDAAWKGQKKQSQVAMVGRERLPPLVKDSHCEEEHREARVSRPLDENLRRCLSNFENYFGENNIPEQERLQIVYSNLEGDIGQWIKHLWKKNSPTSWKEFKCMMARETKTTMKVNHQPHYSGIQQEGSVREYRERFEALCLGSVILPGQGLEALFLQGLQPSLQTAVRELKPNGIVQMMDTAQWLEESNSLMVYGSGLSVQTEPKVYPTTQAELRSMVLMGYMREDLKDTPRPANEDTGTLKQEHELPGTEVATCRGMRFYGYILQQEVSFSYRLASDVKRSCQEISLRINDIDIVEDYCVWDLKRDVVDVILGYEWLSKLGETEVNWQNQSFSFIHNQDWVTLCPKNKDLEQGTKRVKMRSEKEQGGMRNELESDCGIVAYYLADKVALKGESNVSCVEVTNDRDCEDEKRGENQEMKLSTEYPKEVSWFNEFEQIGILVKMQFTRPPEVFLGQVMEQENVKATIEVDVCVEKQKREIEDHLVLGLKTGEDKVRLMVGSFSKQQDRVYKCCMMLEMLLVSNGVSSLENTRALKRSAEMSRWKQFGVTHKEGKERGSSQTGFGGTIDPRAKTKHETKANKAMINAREFHFQFLPP", "length": 818, "header": "tr|F4IWM0-1|F4IWM0_ARATH Isoform 1 of ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IWM0-1" }, "isoforms": [ { "isoform_ac": "F4IWM0-1", "url": "https://www.uniprot.org/uniprotkb/F4IWM0/entry#F4IWM0-1", "sequence": { "sequence": "MATQAAQAITVTDLEAILDRFVEKLEEKLDSVVQRLQAQQEEYRRGIREIFAKFFPKLLPILGSQSFQRRCILAGEEEPMLHKLAGEDLFLLIRAIIRPRSSWLDSTVPFPRLLVARQESHRRSFSGYYGSDSQESSDGVVSRRKSWERKRYRESKDGDIRSSEQSARNGSLFWTNSKKAWEQVGLDSQEKNDNAADSIRVLYIGFQGTAPQVAMEVEHDIISRDAAWKGQKKQSQVAMVGRERLPPLVKDSHCEEEHREARVSRPLDENLRRCLSNFENYFGENNIPEQERLQIVYSNLEGDIGQWIKHLWKKNSPTSWKEFKCMMARETKTTMKVNHQPHYSGIQQEGSVREYRERFEALCLGSVILPGQGLEALFLQGLQPSLQTAVRELKPNGIVQMMDTAQWLEESNSLMVYGSGLSVQTEPKVYPTTQAELRSMVLMGYMREDLKDTPRPANEDTGTLKQEHELPGTEVATCRGMRFYGYILQQEVSFSYRLASDVKRSCQEISLRINDIDIVEDYCVWDLKRDVVDVILGYEWLSKLGETEVNWQNQSFSFIHNQDWVTLCPKNKDLEQGTKRVKMRSEKEQGGMRNELESDCGIVAYYLADKVALKGESNVSCVEVTNDRDCEDEKRGENQEMKLSTEYPKEVSWFNEFEQIGILVKMQFTRPPEVFLGQVMEQENVKATIEVDVCVEKQKREIEDHLVLGLKTGEDKVRLMVGSFSKQQDRVYKCCMMLEMLLVSNGVSSLENTRALKRSAEMSRWKQFGVTHKEGKERGSSQTGFGGTIDPRAKTKHETKANKAMINAREFHFQFLPP", "length": 818, "header": "tr|F4IWM0-1|F4IWM0_ARATH Isoform 1 of ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IWM0-1" }, "locus": { "chromosome": "3", "start_pos": 14838392, "end_pos": 14841189, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G42723.1", "url": "https://www.ensemblgenomes.org/id/AT3G42723.1" }, { "database": "Ensembl Peptide", "id": "AT3G42723.1", "url": "https://www.ensemblgenomes.org/id/AT3G42723.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IXC9", "locus": {} } ], "crossref": [ { "id": "F4IXC9", "url": "https://alphafold.ebi.ac.uk/entry/F4IXC9", "database": "AlphaFoldDB", "categories": [] }, { "id": "820715", "url": "https://www.ncbi.nlm.nih.gov/gene/820715", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4IXC9", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4IXC9*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001258", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001258", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011042", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011042", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GATMDDK", "url": "https://omabrowser.org/oma/group/GATMDDK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13833", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13833", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13833:SF73", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13833:SF73", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01436", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01436", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_974315", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974315", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G14860", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G14860", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IXC9", "url": "https://www.uniprot.org/uniprotkb/F4IXC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IXC9-1", "url": "https://www.uniprot.org/uniprotkb/F4IXC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKSQILLNAESFTCSSFNTFFTLWIFFTLHSFPFQAQAAPSGSLIKHMSSVLKWTTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSDDGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRGVTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGKSNIAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLIGYATCMLQQGFGNSFFSKTQVGSETSYEEEHPGKEKLSRPVHEKTITKEEPGWPSFGQLLTDLCKLALEFITSHLVPARFQTNPNLRPLKDRLIMPEDEQEPPRVQRHTAPAPISESRHAHLPKADDSYPEHKTPKLRSSSVMKDPTLSSSKHHRTSSKRQDYAQFYASGEVAQPKIHKERSRRRHRDKTTETEPKPTPSDTVKPVEYSNSSKFDHYNMRSSKYGPETPFRF", "length": 493, "header": "tr|F4IXC9-1|F4IXC9_ARATH Isoform 1 of NHL domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXC9-1" }, "isoforms": [ { "isoform_ac": "F4IXC9-1", "url": "https://www.uniprot.org/uniprotkb/F4IXC9/entry#F4IXC9-1", "sequence": { "sequence": "MGKSQILLNAESFTCSSFNTFFTLWIFFTLHSFPFQAQAAPSGSLIKHMSSVLKWTTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSDDGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRGVTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGKSNIAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLIGYATCMLQQGFGNSFFSKTQVGSETSYEEEHPGKEKLSRPVHEKTITKEEPGWPSFGQLLTDLCKLALEFITSHLVPARFQTNPNLRPLKDRLIMPEDEQEPPRVQRHTAPAPISESRHAHLPKADDSYPEHKTPKLRSSSVMKDPTLSSSKHHRTSSKRQDYAQFYASGEVAQPKIHKERSRRRHRDKTTETEPKPTPSDTVKPVEYSNSSKFDHYNMRSSKYGPETPFRF", "length": 493, "header": "tr|F4IXC9-1|F4IXC9_ARATH Isoform 1 of NHL domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IXC9-1" }, "locus": { "chromosome": "3", "start_pos": 4998304, "end_pos": 5001046, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G14860.2", "url": "https://www.ensemblgenomes.org/id/AT3G14860.2" }, { "database": "Ensembl Peptide", "id": "AT3G14860.2", "url": "https://www.ensemblgenomes.org/id/AT3G14860.2" } ] } } ], 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E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4IXC9", "url": "https://www.uniprot.org/uniprotkb/F4IXC9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IXC9", "url": "https://www.uniprot.org/uniprotkb/F4IXC9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4IXC9", "url": "https://www.uniprot.org/uniprotkb/F4IXC9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IXC9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 493, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IXC9-F1.pdb", "url_external": 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} ] }, { "uniprot_canonical_ac": "F4IXI5-1", "uniprot_ac": "F4IXI5", "uniprot_id": "F4IXI5_ARATH", "mass": { "chemical_mass": 41002.0, "monoisotopic_mass": 41002.0 }, "refseq": { "ac": "NP_001078158", "name": "Serine/threonine-protein kinase WNK (With No Lysine)-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078158" }, "gene_names": [], "protein_names": [ { "name": "Serine/threonine-protein kinase WNK (With No Lysine)-like protein", "type": "synonym", "evidence": [ { "id": "NP_001078158", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078158" }, { "id": "F4IXI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IXI5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IXI5", "url": 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E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LVG0", "url": "https://www.uniprot.org/uniprotkb/Q9LVG0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis 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"MFCRIRAHAEKLFHFLHDSQGGSVIITGSRIELCQILVEVMKDFQMPEPTESPEEHRPGFFCVYEIYFKGCGLTFPLPEALVRYLLALEIALPQLTPNLLRTILGIITIAAEAGYAIGVLKLNELLSVRSFRTKSDTSRLIRTPIEISSRTFRTKKRIGITRGKTLWNSFTLDRFIEANHKLRMSPPGHLLQLPLPPSLSKGTSARAITARRKTMSKSIVEACEVNKSFFQSTVDKKEYSRTLLVNDGSAEWARSAGAYRPTPHRKGHSGRSSHKERSPRCDSPWPTSQTGLCSEPIADLIRKKRDRPTRRSSSPKRDKTRARTDRSPRPSLPPRSMGPPPPVTVSPSSGSGGEKAERRQIRDAGTKAVLVPQTKSLTAMETEGNVFQCFKTGKDTILPAFDRWRPAICERFLLHAHHSSRANSELNDMIELKLEDQLANLSTELMKSNGELQEQYQSAYELSNQMSELQLKYKAVANYQDAKLARSASKAGKGVKGRGMELIQGAIVFIQTEKARMELESDIKEYEGNLLLLDQTHEDDFSEEREWDELKAVLEEKRNRLPALPSSSFNPQQFEEFFTELPPLSESGLDWAGVSDSVEPEVPIAPTPILEAVITPPEISPSTNSETVVIEDDDGSDSVVPSEQPATGEPDETETTAADPESVQIEPEMPENS", "length": 673, "header": "tr|F4IXU3-1|F4IXU3_ARATH Isoform 1 of Myosin heavy chain-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IXU3-1" }, "isoforms": [ { "isoform_ac": "F4IXU3-1", "url": "https://www.uniprot.org/uniprotkb/F4IXU3/entry#F4IXU3-1", "sequence": { "sequence": "MFCRIRAHAEKLFHFLHDSQGGSVIITGSRIELCQILVEVMKDFQMPEPTESPEEHRPGFFCVYEIYFKGCGLTFPLPEALVRYLLALEIALPQLTPNLLRTILGIITIAAEAGYAIGVLKLNELLSVRSFRTKSDTSRLIRTPIEISSRTFRTKKRIGITRGKTLWNSFTLDRFIEANHKLRMSPPGHLLQLPLPPSLSKGTSARAITARRKTMSKSIVEACEVNKSFFQSTVDKKEYSRTLLVNDGSAEWARSAGAYRPTPHRKGHSGRSSHKERSPRCDSPWPTSQTGLCSEPIADLIRKKRDRPTRRSSSPKRDKTRARTDRSPRPSLPPRSMGPPPPVTVSPSSGSGGEKAERRQIRDAGTKAVLVPQTKSLTAMETEGNVFQCFKTGKDTILPAFDRWRPAICERFLLHAHHSSRANSELNDMIELKLEDQLANLSTELMKSNGELQEQYQSAYELSNQMSELQLKYKAVANYQDAKLARSASKAGKGVKGRGMELIQGAIVFIQTEKARMELESDIKEYEGNLLLLDQTHEDDFSEEREWDELKAVLEEKRNRLPALPSSSFNPQQFEEFFTELPPLSESGLDWAGVSDSVEPEVPIAPTPILEAVITPPEISPSTNSETVVIEDDDGSDSVVPSEQPATGEPDETETTAADPESVQIEPEMPENS", "length": 673, "header": "tr|F4IXU3-1|F4IXU3_ARATH Isoform 1 of Myosin heavy chain-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IXU3-1" }, "locus": { "chromosome": "3", "start_pos": 15139995, "end_pos": 15143123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G43148.1", "url": "https://www.ensemblgenomes.org/id/AT3G43148.1" }, { "database": "Ensembl Peptide", "id": "AT3G43148.1", "url": "https://www.ensemblgenomes.org/id/AT3G43148.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 607, "start_aa": "Thr", "end_pos": 607, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr607", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4IXU3", "url": "https://www.uniprot.org/uniprotkb/F4IXU3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IXU3", "url": "https://www.uniprot.org/uniprotkb/F4IXU3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G43148", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G43148", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 440, "end_pos": 442, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4IXU3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 673, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4IXU3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4IXU3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 607 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 226, "end_pos": 228 }, { "start_pos": 440, "end_pos": 442 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": 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"MAMEITQFLLAAQSADARVRTEAEASLRQFQEQNLPLFLLSLSFELENNDKPAESRRLAGILLKNSLDAKDSATKDHLVKQWFAIDVALKSQIKDRLLRTLGSSALEARHTSAQVIAKVASIEIPQKQWPELVGSLLNNMTQQGSPAHLKQSTLETLGYVCEEISHHDLVQDEVNSVLTAVVQGMNQSENTAEVRLAATKALLNALDFSQTNFENEMERNYIMKMVCETACSKEAEIRQAAFECLVSIASTYYEVLEHYIQTLFELTSNAVKGDEESVALQAIEFWSSICDEEIDRQEYDSPDSGDSSPPHSCFIEKALPHLVQMLLETLLKQEEDQDHDDDVWNISMAGGTCLGLVARTVGDGVVPLVMPFVEKNISSPDWRSREAATYAFGSILEGPTIDKLAPMVAAGLEFLLNATKDQNNHVRDTTAWTLSRIFEFLHXPDSGFSVISPENLPRIVSVLLESIKDVPNVAEKVCGAIYNLAQGYEDSGASSSLLSPYLTEIITHLLAAAERTDGAESKLRGAAYETLNEVVRCSNLSEASSIIAHLLPAIMKKLAETMDLPIISTDDREKQAELQASLCGVLQVIIQKLSSRDDMKPIIVQNADDIMRLFLRVFGCHSSSVHEEAMLAIGALAYATGTEFVKYMPELFKYLQMGLQNFEEYQVCSITVGVIGDICRALDEKILPFCDQIMGLLIQNLQSGALHRSVKPPIFSCFGDIALAIGAHFERYVAPAVQIMQGAAQVCAQMDTLDEELMDYANQLRRSIFEAYSGILQGFKDAKAELMMPYAQHLLQFVELVSKDSLRDESVTKAAVAAMGDLADVVGENTKQLFQNFTFCDEFLNECLESEDEDLKVTARWTQGMIARLVL", "length": 871, "header": "tr|F4IYK3-1|F4IYK3_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IYK3-1" }, "isoforms": [ { "isoform_ac": "F4IYK3-1", "url": "https://www.uniprot.org/uniprotkb/F4IYK3/entry#F4IYK3-1", "sequence": { "sequence": "MAMEITQFLLAAQSADARVRTEAEASLRQFQEQNLPLFLLSLSFELENNDKPAESRRLAGILLKNSLDAKDSATKDHLVKQWFAIDVALKSQIKDRLLRTLGSSALEARHTSAQVIAKVASIEIPQKQWPELVGSLLNNMTQQGSPAHLKQSTLETLGYVCEEISHHDLVQDEVNSVLTAVVQGMNQSENTAEVRLAATKALLNALDFSQTNFENEMERNYIMKMVCETACSKEAEIRQAAFECLVSIASTYYEVLEHYIQTLFELTSNAVKGDEESVALQAIEFWSSICDEEIDRQEYDSPDSGDSSPPHSCFIEKALPHLVQMLLETLLKQEEDQDHDDDVWNISMAGGTCLGLVARTVGDGVVPLVMPFVEKNISSPDWRSREAATYAFGSILEGPTIDKLAPMVAAGLEFLLNATKDQNNHVRDTTAWTLSRIFEFLHXPDSGFSVISPENLPRIVSVLLESIKDVPNVAEKVCGAIYNLAQGYEDSGASSSLLSPYLTEIITHLLAAAERTDGAESKLRGAAYETLNEVVRCSNLSEASSIIAHLLPAIMKKLAETMDLPIISTDDREKQAELQASLCGVLQVIIQKLSSRDDMKPIIVQNADDIMRLFLRVFGCHSSSVHEEAMLAIGALAYATGTEFVKYMPELFKYLQMGLQNFEEYQVCSITVGVIGDICRALDEKILPFCDQIMGLLIQNLQSGALHRSVKPPIFSCFGDIALAIGAHFERYVAPAVQIMQGAAQVCAQMDTLDEELMDYANQLRRSIFEAYSGILQGFKDAKAELMMPYAQHLLQFVELVSKDSLRDESVTKAAVAAMGDLADVVGENTKQLFQNFTFCDEFLNECLESEDEDLKVTARWTQGMIARLVL", "length": 871, "header": "tr|F4IYK3-1|F4IYK3_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IYK3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4IYK3", "url": "https://www.uniprot.org/uniprotkb/F4IYK3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "F4IYK3", "url": "https://www.uniprot.org/uniprotkb/F4IYK3" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IYK3", "url": "https://www.uniprot.org/uniprotkb/F4IYK3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G08943", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G08943", "resource": "KEGG Pathway" } ], "orthologs": 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protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319503" }, "gene_names": [], "protein_names": [ { "name": "ARM repeat superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_001319503", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319503" }, { "id": "F4IYK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IYK6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IYK6", "locus": {} } ], "crossref": [ { "id": "AT3G08960", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G08960", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820048", "url": "https://www.ncbi.nlm.nih.gov/gene/820048", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058669", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058669", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G08960", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G08960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SFHYVFH", "url": "https://omabrowser.org/oma/group/SFHYVFH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10997", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10997:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001319503", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319503", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G08960", "url": 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"MALSASDLPAMYTLLANSMSGDETVRRPAEAALSLSESRPGFCSCLMEVIASKDLVSHVDVRLMASVYFKNSINRHWKSRRNSWSMSNEEKSHLRQKLLSHLREENYQIAEMLAVLISKIARFDYPREWPDLFSVLAQQLHSADVLASHRIFLILFRTLKELSTKRLTADQKTFAEISSQFFDFSWHLWQTDVQTILHGFSTMVQSYGSNSAEQHHDELFLTCERWFLCLKIVRQLIISGFLSDANNIQEIQPVKEVSPALLNAAQSFLPYYSSFQNRDPKFWEFVKKACVKLMKVLGAIQSRHPFSFGDKCALPVVVDFCLNKITDPEQALLPFEDFFIQCMVMVKSVLECKEYKPSRTGRVMDDNGDTFEQRKKNASNTVGGIVSSLLPNERIVLLCNVLVRRYFVLTASDLEEWYQNPESFHHEQDMIQWTEKLRPCAEALYMVLFENYSQLLGPIVVSILQEAMNNCPPSVTEITPALLLKDAAYAATAYVYYELSNYLNFRDWFNGALSLELSNDHPNRRIIHRKVAMILGHWVSEIKDDTKRAVYCALIKLLQDNDLAVKLAASRSLCLHVEDANFSEQSFLDLLPICWDSCFKMVEVVQEFDSKVQILNLISTLIGHVSEVIPYAQKLVQFFQKVWEESSGESLLQIQLLVALRNFVIALGYQSPICYSILLPILQKGIDINSPDSLNLLEDSMALWETTLSYAPMMVPQLLALFPYMVEIIERSFDHLQVAVSIMDSYIILDGGEFLNMHASSVAKILDLIVGNVNDKGLLSILPVIDILVQCFPVEVPPLISSCLQKLVIICLSGGDDRDPSKTAVKVSSAAILARILVMNTTYLAQLTSDSSLSVLLQQAGVPVEDNILLCLIDIWLDKVDHASPMQQKTFGLALSIILTLRMPQVLDKLDLILSTCTSVILGENKDLTEEESSGDMSSSRSQGEETPPSKELRKSQIKVSDPIYQMSLENSTRENLQTCSTLHGDAFNSAISRMHPSALAQVKQALKLP", "length": 1010, "header": "tr|F4IYK6-1|F4IYK6_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IYK6-1" }, "isoforms": [ { "isoform_ac": "F4IYK6-1", "url": "https://www.uniprot.org/uniprotkb/F4IYK6/entry#F4IYK6-1", "sequence": { "sequence": "MALSASDLPAMYTLLANSMSGDETVRRPAEAALSLSESRPGFCSCLMEVIASKDLVSHVDVRLMASVYFKNSINRHWKSRRNSWSMSNEEKSHLRQKLLSHLREENYQIAEMLAVLISKIARFDYPREWPDLFSVLAQQLHSADVLASHRIFLILFRTLKELSTKRLTADQKTFAEISSQFFDFSWHLWQTDVQTILHGFSTMVQSYGSNSAEQHHDELFLTCERWFLCLKIVRQLIISGFLSDANNIQEIQPVKEVSPALLNAAQSFLPYYSSFQNRDPKFWEFVKKACVKLMKVLGAIQSRHPFSFGDKCALPVVVDFCLNKITDPEQALLPFEDFFIQCMVMVKSVLECKEYKPSRTGRVMDDNGDTFEQRKKNASNTVGGIVSSLLPNERIVLLCNVLVRRYFVLTASDLEEWYQNPESFHHEQDMIQWTEKLRPCAEALYMVLFENYSQLLGPIVVSILQEAMNNCPPSVTEITPALLLKDAAYAATAYVYYELSNYLNFRDWFNGALSLELSNDHPNRRIIHRKVAMILGHWVSEIKDDTKRAVYCALIKLLQDNDLAVKLAASRSLCLHVEDANFSEQSFLDLLPICWDSCFKMVEVVQEFDSKVQILNLISTLIGHVSEVIPYAQKLVQFFQKVWEESSGESLLQIQLLVALRNFVIALGYQSPICYSILLPILQKGIDINSPDSLNLLEDSMALWETTLSYAPMMVPQLLALFPYMVEIIERSFDHLQVAVSIMDSYIILDGGEFLNMHASSVAKILDLIVGNVNDKGLLSILPVIDILVQCFPVEVPPLISSCLQKLVIICLSGGDDRDPSKTAVKVSSAAILARILVMNTTYLAQLTSDSSLSVLLQQAGVPVEDNILLCLIDIWLDKVDHASPMQQKTFGLALSIILTLRMPQVLDKLDLILSTCTSVILGENKDLTEEESSGDMSSSRSQGEETPPSKELRKSQIKVSDPIYQMSLENSTRENLQTCSTLHGDAFNSAISRMHPSALAQVKQALKLP", "length": 1010, "header": "tr|F4IYK6-1|F4IYK6_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4IYK6-1" }, "locus": { "chromosome": "3", "start_pos": 2729743, "end_pos": 2737356, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G08960.3", "url": "https://www.ensemblgenomes.org/id/AT3G08960.3" }, { "database": "Ensembl Peptide", "id": "AT3G08960.3", "url": "https://www.ensemblgenomes.org/id/AT3G08960.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 942, "end_pos": 942, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IYK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IYK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser942" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4IYK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IYK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G08960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G08960", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286Y8U4-1", "protein_name": "Importin-11", "gene_name": "ipo11", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDIQSASSVVLQALTQATSQDTAVLKPAEEQLRQWETQPGFYSVLLSIFNNHLLDVNVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSSLRAGLITNFNEPVNQIATQIAVLIAKVARLDCPRQWPELIPILLESVKVQDSLQQHRALLTFYHVTKTLASKRLATDRRLFQDLASSIYSFACSLWNHHTDSFLQQIYSGDQQTALSSLERTLLSLKVLRKLTVHGFVDPQNNMEVMGFLNAVFERLKQFLECCRQVGPGSPCREKLEKTIILFTKVLLDFLEYHPCPFIPLIQRSLEFAVSYVFTEAGEGVVFERFIVQCMNLIKMIVKNDAYKPAKNIEDSKPESLEAHRIKTAFFTHQTLTEIGRRLVSKYFLLTEEELTMWEEDPESFAVEETGGDSWKYSLRPSTEVLFLDIFHNYSQTLTPVLLEMVQNLQGPSNVEDPVQMLMKDAVYNAVGLAAYELFDNVDFDQWFKNQLLGELQVSHNRYKLIRRRVIWLIGQWISVKFKPELRPLLYEVILSLMQDPDLVVRIETATTLKLAVDDFEFRTEQFLPYLESIFSLLFQLLQQVNECDTKMQVLHVISCVIERVSIQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGAESKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPAITPELLRIFQNMSPLLELSSENVRTCFQIINAYIYLSATDFLQNYAEALCRSFCELLSDITNEGQVQVLKVVEIAIKVSPILGSHMFQPLLPSVIRGIVEGERYPVVMSTYLGVTGRILLQNSGFFTSLLTQMAVEFNQEADQLLGSMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETATFKDCMLMSHFEEPKLTDDEEPPTEQDKRRKLLALEDPVHSVSLQQFVYEKLKAQQMLMGDQGFQALMETVDTEIVRQLQEFIQGM", "length": 975 }, "evidence": [ { "id": "F4IYK6", "url": "https://omabrowser.org/oma/group/F4IYK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A5G2QSF9-1", "protein_name": "Importin-11", "gene_name": "IPO11", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKSTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQELLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975 }, "evidence": [ { "id": "F4IYK6", "url": "https://omabrowser.org/oma/group/F4IYK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8C2QGD9-1", "protein_name": "Importin-11", "gene_name": "Ipo11", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLHSASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLVESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQQVSSGNESAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNACRDRLEKTIILFTKVLLDFLDQHPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETIEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVSHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLPEITTEGQVQVLKVVESALKVNPVLGPQMFQPILPYVFRGVIEGERYPVVMSIYLAVMGRVLLQNTSFFSSLLNKMAHEFNQEMDQLLGNVIEMWVDRVDNITQPERKKLSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETRTYKDCMLMSHHEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEMLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975 }, "evidence": [ { "id": "F4IYK6", "url": "https://omabrowser.org/oma/group/F4IYK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6APG6-1", "protein_name": "Importin-11", "gene_name": "ENSRNOG00000062438", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLNSASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLVESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRDRLEKTIILFTKVLLDFLDQHPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKTQLLPELQVSHNRYKPLRRRVIWLIGQWISVKFKSDLRPRLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNIQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAAGLCQSFYELLPEITTEGQVQVLKVVENTLKVNPVLGPQMFQRILPYVFRGVIEGERYPVVMSIYLAVMGRVLLQNASFFSSLLNEMGHEFNQEMDQLLGNVIEMWVDRMDNITQPERKKLSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETRTYKDCMLMSHHEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEILGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975 }, "evidence": [ { "id": "F4IYK6", "url": "https://omabrowser.org/oma/group/F4IYK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YDA3-1", "protein_name": "Importin-11", "gene_name": "IPO11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTFIGKTTERCACVNELRLVVTSWFYLLAAEVLVAVCSVCCASHKIFMDLNSASSIVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHALDVNVRWLAVLYFKNGIDRYWRRVAPHALSEEEKTTLRAGLIANFNEPVNQIATQISVLIAKVARVDCPRQWPELIPTLLESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQACTGNEAAASNSLERTLLSLKVLRKLTVHGFVEPHRSVEVMGFLHALFERLKQFLECSRNIRTGNVCRDRLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFAVSYVFTEAGEGVVFERFIVQCMNLIKMIVKNYAYKPSKYIEDSSPETLEAHKIKTAFFTYPTLMEICRRLVTHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMVHSLQGTTNLEDTSAILIKDAVYNAVGLAAYELFDSVDFDQWFKNQLLAELQVSHNRYKPIRRRVIWLIGQWISVKFKSDLRPMLYEAIRNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLESMFTLLFQLLQEVTECDTKMHVLHVLSCVNERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGAESKNLYPFLLPIIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCLTPELLRIFQNMSALLELSSENLKNCFKIINAYVFLSSTEFLQTYAVDLCRSFCELLKDITTEGQVQALKVVENVLKVNPILGPQMFQPLLPSVFRGIIDGERYPMLMSTYLGVIGRVLLQNTSFFSLLLNQMACESGQELDQILGNMIEMWVDRMDNITQPERRKLSALALISLLPSLNSVIQDKFCGIIHVTLEGLYDVMTEDPETGTYKDCLLLSHFEEPKVTEDEEPPTEQDKRKKLLALKDPVHTVSLQQFVYEKLKAQQELLGEQGFHALMETVDTEVVAQLQEFLQGF", "length": 1022 }, "evidence": [ { "id": "F4IYK6", "url": "https://omabrowser.org/oma/group/F4IYK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q02932-1", "protein_name": "Importin beta-like protein KAP120", "gene_name": "KAP120", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MASSLNELNLVQVLEQASNPQHIRSDVQKLAEQQLRQWETQAGFHYLLQSIYLNLSNSLQIRWLAVIQFKNGVDKYWRSTRINAIPKDEKASIRGRLFEMIDEQNNQLCIQNAQASARIARLDFPVEWPTLFEDLENLLNDEIIRKDSVKIYNILMHINQIVKVLGTARIGRCRPAMQSKVPLILPLIVRIYLQSFEEWTTSSNLNYEDLSSLQVSYLALKVLRRIICEGYDRPQTDQSVCDFIKLSVSHFEMLISNHENFKKFDIYEKFIKCLGKLYFNLVTGSPANFILLPCSTQILITYTRLIFDKAPKVYRENSDVTGDFWEQTAIRGLLILKRVINFIHKKGAITLKARSDKLTIDASINKINTEFLNENLITRLVDTLMEWYLRLRPTELENWFMDPEEWINEQMATSYEYQIRPCAENVFQDLMNTFSELLVPYLLKKIENDASKLSNSLDDFLRKDAIYASFQLSASAVSEMVDFDRLLIQVFLPEATNTNISGDELRIIRRRVALIINEWSTVKCSEESKSLCYKLFTNFLTDEDDKVVLLTTVQTVRTMVDDWNFNKDTFQPFLTENVHLLLRKILPSVSLTETRLYVLNTLSDIIIQTKPLISRDLLVEILQIIPNLWEIATNNASEAILANALLRLLRNLVSSLGSQSHLTWDIAIPVVALACDPSSMQYQLLSEDGYELWGMLLQNFSSHDQEFDDKFVELVPFLKYGIETHTEILPTLLEIIKSYALILNPVDFFSNNTFQDIFKQMSKYLLKLREDSFQLVLEIWEILILSNESDYENLLLQKFYETGVLSALFDAIFLEEAPSSYLCSQIIQIIARISYVNPDALMTFLATYHDNLPTSNENARMPESIRKIVSKDQTYDSVVNKLLTGWIVCFRDIFDPKFKKVHILGISSLLRTGLVPILTEFSSIASLWIEMLEEINETNRGDCEKYHLNDIVTEQSIAFHPLTAEQLRYHQLCKNNDPVHNISLKDFISQSMEYLESHLGVERYQEFLKTINPSLLENLQMFLSIQPQEARP", "length": 1032 }, "evidence": [ { "id": "F4IYK6", "url": "https://omabrowser.org/oma/group/F4IYK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54WF0-1", "protein_name": "Importin N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKEIVAQLLQATLSSDHTRVQAESQVQLLTREKGFSSILLEIFGDQSIDKSIRNLSIVLFKNIITNNWRRKDNTLFSEEEKQDYRNRVLLLLNNPNETCKNGVDILAGVIGTMARVDFPSNWPNLLTNLLELFEKSSSEQIKIVSLKTIKFVVKELASRRFVIDRTFFSQFSNTIFNYFIQIWRSGVKRLIELMIEGGNLAQHESFFILVYYVSKILRRVVEYGYTDYQNSPEICQYFSDIFTGLPEILKLRTRVTNPKILELVDKFIYINQKTIIKSQLQNPLTFINLLLPSLRFFAGQCLYYNPHDELKIEWNTTEDYQSVMTQSLNFLKQVIDCSSYQGDYLDSETDEKQSISNLAIKSGGKINGNGSIQIAQQTIKQFFNKELLSELLKALVSHYLIINREEVERWEDSPEEYIQELQVNDSVYELKPSAYNLFILLMRHFHQDSVSIVVSMLEFVTSPSFNTELTSEKICLKEACYMTIGLGYHDLMDIVNFSQVFISIFVPELHSADERFKIIKRRILWLVSYWVGKIPDQYKESVVKLLLEFLKNSDIVIALTALDALKAYIDDFNFDHHSYQPYLKETLESVIGLFSRSTNETTKSNLLSALASIFVKFNESIKPFSTVILQLFQHLWNGGKEQPIVKSAVLRSFAFFLQALNSDPADFYSLLFPIIEFSISQEDEKVYLLEDGLELWYRTMVLVPTLSQPQQPLIQMFKHWFTIIAQSLENSEICFKILDTYLLLGQIDFLKIYGAELSSTLYDIIGDLGEEYTELIVSAIMRIIQVVPNPQDSITLLIEQCLFKILSLIISRKETSTLVLIEYFSIFSRIMTMNPLSFFQLFDRYPLELLDKDGEYYDPSNFNNDNNDDDDDDDDGQSKIKEMPQNKSQLLQQFFEIYFDKIDSTSSSDQRKLIAIGLSNLLAIPREEVYPQIGEIITNVVGIRADISDITHDDIYCNDGDEVSGVQIQSDHIFQVDPLTTIDLSTYLYQKIQECSNLFGTENFQKAIVNVHPSILSLAIPPKN", "length": 1025 }, "evidence": [ { "id": "F4IYK6", "url": "https://omabrowser.org/oma/group/F4IYK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8K2V6-1", "protein_name": "Importin-11", "gene_name": "Ipo11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLNSASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLVESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQHVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRDRLEKTIILFTKVLLDFLDQHPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLEGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKTQLLPELQVSHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAAGLCQSFYELLPEITTEGQVQVLKVVENALKVNPVLGPQMFQRILPCVFRGVIEGERYPVVMSIYLAVMGRVLLQNTSFFSSLLNEMGHEFNQEMDQLLGNVIEMWVDRMDNITQPERKKLSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETRTYKDCMLMSQHEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEILGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975 }, "evidence": [ { "id": "F4IYK6", "url": "https://omabrowser.org/oma/group/F4IYK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UI26-1", "protein_name": "Importin-11", "gene_name": "IPO11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEEKTTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQEVSSGNEAAILSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRDRLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAYELFDSVDFDQWFKNQLLPELQVIHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNMQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLKEITTEGQVQVLKVVENALKVNPILGPQMFQPILPYVFKGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMAHKFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEMLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975 }, "evidence": [ { "id": "F4IYK6", "url": "https://omabrowser.org/oma/group/F4IYK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "pmid": "" }, { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "nucleocytoplasmic transport", "id": "GO:0006913", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006913", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "pmid": "" }, { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "pmid": "" }, { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "pmid": "" }, { "name": "nuclear export signal receptor activity", "id": "GO:0005049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005049", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "pmid": "" }, { "name": "nuclear import signal receptor activity", "id": "GO:0061608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061608", "evidence": [ { "database": "UniProtKB", "id": "F4IYK6", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 451, "end_pos": 453, "annotation": "n_glycosylation_sequon" }, { "start_pos": 581, "end_pos": 583, "annotation": "n_glycosylation_sequon" }, { "start_pos": 840, "end_pos": 842, "annotation": "n_glycosylation_sequon" }, { "start_pos": 971, "end_pos": 973, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4IYK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IYK6" }, { "id": "PS50166", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50166" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Importin N-terminal", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 104, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 942 ], "sequon_annotation_sites": [ { "start_pos": 377, "end_pos": 379 }, { "start_pos": 451, "end_pos": 453 }, { "start_pos": 581, "end_pos": 583 }, { "start_pos": 840, "end_pos": 842 }, { "start_pos": 971, "end_pos": 973 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IYY5-1", "uniprot_ac": "F4IYY5", "uniprot_id": "F4IYY5_ARATH", "mass": { "chemical_mass": 36317.0, "monoisotopic_mass": 36317.0 }, "refseq": { "ac": "NP_188846", "name": "ubiquitin carboxyl-terminal hydrolase-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188846" }, "gene_names": [], "protein_names": [ { "name": "Ubiquitin carboxyl-terminal hydrolase-like protein", "type": "synonym", "evidence": [ { "id": "F4IYY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IYY5/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin carboxyl-terminal hydrolase-like protein", "type": "synonym", "evidence": [ { "id": "NP_188846", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188846" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IYY5", "url": "https://www.uniprot.org/uniprotkb/F4IYY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IYY5", "locus": {} } ], "crossref": [ { "id": "F4IYY5", "url": "https://alphafold.ebi.ac.uk/entry/F4IYY5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G22080", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G22080", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00121", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00121", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "821770", "url": "https://www.ncbi.nlm.nih.gov/gene/821770", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G22080", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G22080", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WHTEING", "url": "https://omabrowser.org/oma/group/WHTEING/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46162", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46162", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46162:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46162:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22486", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22486", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_188846", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188846", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G22080", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G22080", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IYY5", "url": "https://www.uniprot.org/uniprotkb/F4IYY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IYY5-1", "url": "https://www.uniprot.org/uniprotkb/F4IYY5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMCSSVSSTTLRSWRERTPNSYSLKLQNISQVEKSTLFSDGKYQSRLFSSGGYNWRMIIYPKGNRKDDGSGFISMYVEIDSTSLLTTPTTEVFADLRFFVFNKKENKYYTIQHVESKLFNAFRTIWGLAQVLPVDTFTDPKNGYIFEGDQCEFGVDVIVAAPPTNWEIHTLHEALSQPKFFWTVKNFSELNNNVYTSGNFSMRERKWVLKLYPKGDVKGDRKWLSLYLYLDQSETLKESEKIFVQAQLRVLDPRGSNHVTHKISSWYTSSNTAWGYRKFVSLAEIPKAYLDKDTLKVQIDVEVVSEAEFSPSMI", "length": 314, "header": "tr|F4IYY5-1|F4IYY5_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4IYY5-1" }, "isoforms": [ { "isoform_ac": "F4IYY5-1", "url": "https://www.uniprot.org/uniprotkb/F4IYY5/entry#F4IYY5-1", "sequence": { "sequence": "MMCSSVSSTTLRSWRERTPNSYSLKLQNISQVEKSTLFSDGKYQSRLFSSGGYNWRMIIYPKGNRKDDGSGFISMYVEIDSTSLLTTPTTEVFADLRFFVFNKKENKYYTIQHVESKLFNAFRTIWGLAQVLPVDTFTDPKNGYIFEGDQCEFGVDVIVAAPPTNWEIHTLHEALSQPKFFWTVKNFSELNNNVYTSGNFSMRERKWVLKLYPKGDVKGDRKWLSLYLYLDQSETLKESEKIFVQAQLRVLDPRGSNHVTHKISSWYTSSNTAWGYRKFVSLAEIPKAYLDKDTLKVQIDVEVVSEAEFSPSMI", "length": 314, "header": "tr|F4IYY5-1|F4IYY5_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4IYY5-1" }, "locus": { "chromosome": "3", "start_pos": 7777818, "end_pos": 7779243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G22080.1", "url": "https://www.ensemblgenomes.org/id/AT3G22080.1" }, { "database": "Ensembl Peptide", "id": "AT3G22080.1", "url": "https://www.ensemblgenomes.org/id/AT3G22080.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 21, "end_pos": 21, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IYY5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IYY5" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser21" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and 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"https://www.uniprot.org/uniprotkb/F4IZ03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGIWSYMGKTSVFIFGLGFYTYAALFSNSDNKMLMTQLESFKETVKVQMESFTEPSKAQMAKYREMEQKMEAKYREMENKLDNLVKLSMTQISELKVTREKCCNDFWKSRST", "length": 112, "header": "tr|F4IZ03-1|F4IZ03_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZ03-1" }, "isoforms": [ { "isoform_ac": "F4IZ03-1", "url": "https://www.uniprot.org/uniprotkb/F4IZ03/entry#F4IZ03-1", "sequence": { "sequence": "MGIWSYMGKTSVFIFGLGFYTYAALFSNSDNKMLMTQLESFKETVKVQMESFTEPSKAQMAKYREMEQKMEAKYREMENKLDNLVKLSMTQISELKVTREKCCNDFWKSRST", "length": 112, "header": "tr|F4IZ03-1|F4IZ03_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZ03-1" }, "locus": { "chromosome": "3", "start_pos": 10512235, "end_pos": 10513057, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28190.1", "url": 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{ "id": "IPR056592", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056592", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G28223", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28223", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YCITSEM", "url": "https://omabrowser.org/oma/group/YCITSEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24750", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24750", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001118726", "url": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4IZ60-1", "uniprot_ac": "F4IZ60", "uniprot_id": "F4IZ60_ARATH", "mass": { "chemical_mass": 7588.0, "monoisotopic_mass": 7588.0 }, "refseq": { "ac": "NP_001118763", "name": "beta-galactosidase-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118763" }, "gene_names": [], "protein_names": [ { "name": "Beta-galactosidase-like protein", "type": "synonym", "evidence": [ { "id": "F4IZ60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4IZ60/entry#names_and_taxonomy" } ] }, { "name": "beta-galactosidase-like protein", "type": "synonym", "evidence": [ { "id": "NP_001118763", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118763" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4IZ60", "url": "https://www.uniprot.org/uniprotkb/F4IZ60" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4IZ60", "locus": {} } ], "crossref": [ { "id": "F4IZ60", "url": "https://alphafold.ebi.ac.uk/entry/F4IZ60", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G43574", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G43574", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "6240370", "url": "https://www.ncbi.nlm.nih.gov/gene/6240370", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G43574", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G43574", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001118763", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118763", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G43574", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G43574", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4IZ60", "url": "https://www.uniprot.org/uniprotkb/F4IZ60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4IZ60-1", "url": "https://www.uniprot.org/uniprotkb/F4IZ60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPSLVDLESLDHFCATTSGEASFHSDLQFAEVLPPQSPTLHRSQRDTRVPVIGPPPFQPISLLAHCHK", "length": 69, "header": "tr|F4IZ60-1|F4IZ60_ARATH Isoform 1 of Beta-galactosidase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZ60-1" }, "isoforms": [ { "isoform_ac": "F4IZ60-1", "url": "https://www.uniprot.org/uniprotkb/F4IZ60/entry#F4IZ60-1", "sequence": { "sequence": "MVPSLVDLESLDHFCATTSGEASFHSDLQFAEVLPPQSPTLHRSQRDTRVPVIGPPPFQPISLLAHCHK", "length": 69, "header": "tr|F4IZ60-1|F4IZ60_ARATH Isoform 1 of Beta-galactosidase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4IZ60-1" }, "locus": { "chromosome": "3", "start_pos": 15479819, "end_pos": 15480028, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G43574.1", "url": "https://www.ensemblgenomes.org/id/AT3G43574.1" }, { "database": "Ensembl Peptide", "id": "AT3G43574.1", "url": "https://www.ensemblgenomes.org/id/AT3G43574.1" } ] } } ], "glycosylation": [], 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Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4IZ60", "url": "https://www.uniprot.org/uniprotkb/F4IZ60" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4IZ60", "url": "https://www.uniprot.org/uniprotkb/F4IZ60" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G43574", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G43574", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4IZ60", "url": "https://www.uniprot.org/uniprotkb/F4IZ60" } ], "pmid": "" } ] } ] }, 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"length": 1403, "header": "tr|F4IZK5-1|F4IZK5_ARATH Isoform 1 of CW-type Zinc Finger OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4IZK5-1" }, "locus": { "chromosome": "3", "start_pos": 23248129, "end_pos": 23255275, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G62900.2", "url": "https://www.ensemblgenomes.org/id/AT3G62900.2" }, { "database": "Ensembl Peptide", "id": "AT3G62900.2", "url": "https://www.ensemblgenomes.org/id/AT3G62900.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1058, "end_pos": 1058, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], 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"start_pos": 1093, "end_pos": 1093, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser1093" }, { "start_pos": 1097, "end_pos": 1097, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1097" }, { "start_pos": 1144, "end_pos": 1144, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1144" }, { "start_pos": 1146, "end_pos": 1146, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1146" }, { "start_pos": 118, "end_pos": 118, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser118" }, { "start_pos": 1215, "end_pos": 1215, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr1215" }, { "start_pos": 1314, "end_pos": 1314, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser1314" }, { "start_pos": 1315, "end_pos": 1315, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1315" }, { "start_pos": 283, "end_pos": 283, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser283" }, { "start_pos": 383, "end_pos": 383, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser383" }, { "start_pos": 506, "end_pos": 506, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser506" }, { "start_pos": 555, "end_pos": 555, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": 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"https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser720" }, { "start_pos": 723, "end_pos": 723, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser723" }, { "start_pos": 725, "end_pos": 725, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser725" }, { "start_pos": 74, "end_pos": 74, 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"id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr796" }, { "start_pos": 799, "end_pos": 799, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser799" }, { "start_pos": 801, "end_pos": 801, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser801" }, { "start_pos": 892, "end_pos": 892, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser892" }, { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser896" }, { "start_pos": 898, "end_pos": 898, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser898" }, { "start_pos": 900, "end_pos": 900, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser900" }, { "start_pos": 905, "end_pos": 905, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser905" }, { "start_pos": 920, "end_pos": 920, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser920" }, { "start_pos": 921, "end_pos": 921, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr921" }, { "start_pos": 930, "end_pos": 930, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4IZK5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4IZK5" }, { "database": 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"MARFPIAICLMLILVASSTIYEAQGVFLLRHYMNKFPKNSQDFEPFAYKGMLSFVDNLENMAPEKGEYKDFFSKLKAFMSFINTAKGSSSEFQSQMKQQAEGLFKAISALGVKGGSSADTSKLIESLMSMGKTFAEFKRSGATMMTSEQRRELVTSMAKWAQVIGQFVKKVGDQNGDGAKIDLSSLLGGGSSGLGSSGDSGSPGSDSGSPSADTGSPTDGGSYGDTTGDSGSSAGSPSYPSDDGSGSTAGGPSGSTTDGSAGGESSMGGDSSSAGAAGESGSAATADSGDAAGADSGGAAGADSGGAASADSGGAAAGETASGGAAAADTSGGSAETGGESASGGAASGAGAASGASAKTGGESGEAASGGSAETGGESASAGAASGGSAETGGESGSGGAASGGESASGGATSGGSPETGGSAETGGESASGGAASGGESASGGAASSGSVESGGESTGATSGGSAETSDESASGGAASGGESASGGAASGGSAETGGESTSSGVASGGSTGSESASAGAASGGSTEANGGAAAGGSTEAGSGTSTETSSMGGGSAAAGGVSESSSGGSTAAGGTSESASGGSATAGGASGGTYTDSTGGSPTGSPSAGGPSGSASESSMEGGTFGGQSMGGQAGSASYQSTNYQKTHSKSAGKSSVSHSSEEKSSDSANADS", "length": 674, "header": "tr|F4J0E6-1|F4J0E6_ARATH Isoform 1 of Transmembrane protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J0E6-1" }, "locus": { "chromosome": "3", "start_pos": 10805857, "end_pos": 10808461, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28780.1", "url": "https://www.ensemblgenomes.org/id/AT3G28780.1" }, { "database": "Ensembl Peptide", "id": "AT3G28780.1", "url": "https://www.ensemblgenomes.org/id/AT3G28780.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 126, "end_pos": 126, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J0E6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J0E6" } ], "site_lbl": "Ser126" }, { "start_pos": 129, "end_pos": 129, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J0E6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J0E6" } ], "site_lbl": "Ser129" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J0E6", "url": "https://www.uniprot.org/uniprotkb/F4J0E6" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen 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"F4J0E6", "url": "https://www.uniprot.org/uniprotkb/F4J0E6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J0E6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 674, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J0E6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J0E6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J0E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0E6" }, { "id": "PF06746", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF1216", "eco_id": "ECO_0000259", "start_pos": 71, "end_pos": 171, "start_aa": "Phe", "end_aa": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J0F0-1", "uniprot_ac": "F4J0F0", "uniprot_id": "F4J0F0_ARATH", "mass": { "chemical_mass": 55501.0, "monoisotopic_mass": 55501.0 }, "refseq": { "ac": "NP_189525", "name": "mucin-like protein, putative (DUF1216)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189525" }, "gene_names": [], "protein_names": [ { "name": "Mucin-like protein, putative (DUF1216)", "type": "synonym", "evidence": [ { "id": 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"https://www.ncbi.nlm.nih.gov/gene/822515", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G28830", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G28830", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNEFTPY", "url": "https://omabrowser.org/oma/group/CNEFTPY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31607", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31607", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31607:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31607:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06746", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06746", "database": "Pfam", 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"MARISLGICLMLVVASSVIYEAQGTFLLNHYLKKNFPKKCNEFTPYANKGMITLVTDLEGSSPATTEFKTFFTQFKSYMSFIETTSASTKNVDAEMTAKCDGLFKAMSALSASKGVKSADAGSMKMTMLSMGKTLVEQKKNTKIMTLKEKKELVIDMVKWTKMVATFVKSASEQKGKSINIASYGLDVDVNDSSIVGGAASSESSSTKSGSVSSSGSVSTKSKESSSSGSSASGSVATKSKESSGGSAATKSKESSGGSAATKSKESSGGSATTGKTSGSPSGSPKASPSGSVSGKSSSKGSASAQGSASAQGSASAQGSASAQGSASAQRRESGAMAMSKSRETKTSSQRQSKSSSESSSSSTTTTTVKQVESETSKEVMSFIMQLEKKYAAKAELKVFFESLKSSMQASASVGSKTAKDYVSASKAATGKLSEAMASVSSKNVKSAKMKSNLDTSKDEMLKCVKQIQDINGKMVSGKTVSSTQQSELKQTITKWEKVTTQFVETAASSSSSSSSSSSSSSSSAASQQQGNAAMVKTN", "length": 539, "header": "tr|F4J0F0-1|F4J0F0_ARATH Isoform 1 of Mucin-like protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J0F0-1" }, "isoforms": [ { "isoform_ac": "F4J0F0-1", "url": "https://www.uniprot.org/uniprotkb/F4J0F0/entry#F4J0F0-1", "sequence": { "sequence": "MARISLGICLMLVVASSVIYEAQGTFLLNHYLKKNFPKKCNEFTPYANKGMITLVTDLEGSSPATTEFKTFFTQFKSYMSFIETTSASTKNVDAEMTAKCDGLFKAMSALSASKGVKSADAGSMKMTMLSMGKTLVEQKKNTKIMTLKEKKELVIDMVKWTKMVATFVKSASEQKGKSINIASYGLDVDVNDSSIVGGAASSESSSTKSGSVSSSGSVSTKSKESSSSGSSASGSVATKSKESSGGSAATKSKESSGGSAATKSKESSGGSATTGKTSGSPSGSPKASPSGSVSGKSSSKGSASAQGSASAQGSASAQGSASAQGSASAQRRESGAMAMSKSRETKTSSQRQSKSSSESSSSSTTTTTVKQVESETSKEVMSFIMQLEKKYAAKAELKVFFESLKSSMQASASVGSKTAKDYVSASKAATGKLSEAMASVSSKNVKSAKMKSNLDTSKDEMLKCVKQIQDINGKMVSGKTVSSTQQSELKQTITKWEKVTTQFVETAASSSSSSSSSSSSSSSSAASQQQGNAAMVKTN", "length": 539, "header": "tr|F4J0F0-1|F4J0F0_ARATH Isoform 1 of Mucin-like protein, putative (DUF1216) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J0F0-1" }, "locus": { "chromosome": "3", "start_pos": 10831162, "end_pos": 10833436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28830.1", "url": "https://www.ensemblgenomes.org/id/AT3G28830.1" }, { "database": "Ensembl Peptide", "id": "AT3G28830.1", "url": 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"PTHR31896:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31896:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02458", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02458", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190599", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190599", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G50300", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G50300", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J0K8", "url": "https://www.uniprot.org/uniprotkb/F4J0K8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J0K8-1", "url": "https://www.uniprot.org/uniprotkb/F4J0K8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDDVTVISSSIVQPGNARHSGREKIHLTPSDLSLLYLNYPQRSLLFPKPYPETRFISRLKSSLSTSLEIYFPLAGRLVKVNNHEDNTVSFYIDCDDGRGVKFVHAIAESVSVSDILQPHGSVPDFFRLFFPMNGVRSIDGLSEPLLALQVTEIKDGIVISFGYNHLVADGSSMWNFIHVWSKLCLNGQWEIHQPLVLRGWFLDNIDFPIHIPASEIETERARNREVSTKERVFHFTKEKLSDLKAKANDEIGSSDIKISSLQAVLAHLWRSIVRHSGLNQEEESRCGVAADFRQRLNPPLDKDCFGNVANLGLTTATVGDLLDRGLGWAALQINKTVRLHTNENFRTFSENWVRNGKIPRIDVRSRMGDHGFMVSNSPWFQVYDNDFGLGKPMAVRAGPANGIGGKLVVFRGIEEGSIDVHAILTLSLWSDVLLNLFDDVESLENVIT", "length": 448, "header": "tr|F4J0K8-1|F4J0K8_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J0K8-1" }, "isoforms": [ { "isoform_ac": "F4J0K8-1", "url": "https://www.uniprot.org/uniprotkb/F4J0K8/entry#F4J0K8-1", "sequence": { "sequence": "MDDVTVISSSIVQPGNARHSGREKIHLTPSDLSLLYLNYPQRSLLFPKPYPETRFISRLKSSLSTSLEIYFPLAGRLVKVNNHEDNTVSFYIDCDDGRGVKFVHAIAESVSVSDILQPHGSVPDFFRLFFPMNGVRSIDGLSEPLLALQVTEIKDGIVISFGYNHLVADGSSMWNFIHVWSKLCLNGQWEIHQPLVLRGWFLDNIDFPIHIPASEIETERARNREVSTKERVFHFTKEKLSDLKAKANDEIGSSDIKISSLQAVLAHLWRSIVRHSGLNQEEESRCGVAADFRQRLNPPLDKDCFGNVANLGLTTATVGDLLDRGLGWAALQINKTVRLHTNENFRTFSENWVRNGKIPRIDVRSRMGDHGFMVSNSPWFQVYDNDFGLGKPMAVRAGPANGIGGKLVVFRGIEEGSIDVHAILTLSLWSDVLLNLFDDVESLENVIT", "length": 448, "header": "tr|F4J0K8-1|F4J0K8_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J0K8-1" }, "locus": { "chromosome": "3", "start_pos": 18643860, "end_pos": 18645510, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G50300.1", "url": "https://www.ensemblgenomes.org/id/AT3G50300.1" }, { "database": "Ensembl Peptide", "id": "AT3G50300.1", "url": "https://www.ensemblgenomes.org/id/AT3G50300.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 349, "end_pos": 349, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J0K8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J0K8" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser349" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J0K8", "url": "https://www.uniprot.org/uniprotkb/F4J0K8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4J0K8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J0K8" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4J0K8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J0K8" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J0K8", "url": "https://www.uniprot.org/uniprotkb/F4J0K8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G50300", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G50300", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4J0K8", "url": "https://www.uniprot.org/uniprotkb/F4J0K8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "acyltransferase activity, transferring groups other than amino-acyl groups", "id": "GO:0016747", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016747", "evidence": [ { "database": "UniProtKB", "id": "F4J0K8", "url": "https://www.uniprot.org/uniprotkb/F4J0K8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J0K8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 448, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J0K8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J0K8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 349 ], "sequon_annotation_sites": [ { "start_pos": 334, "end_pos": 336 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J0L0-1", "uniprot_ac": "F4J0L0", "uniprot_id": "F4J0L0_ARATH", "mass": { "chemical_mass": 17818.0, "monoisotopic_mass": 17818.0 }, "refseq": { "ac": "NP_190601", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190601" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4J0L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J0L0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_190601", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190601" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J0L0", "url": "https://www.uniprot.org/uniprotkb/F4J0L0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J0L0", "locus": {} } ], "crossref": [ { "id": "F4J0L0", "url": "https://alphafold.ebi.ac.uk/entry/F4J0L0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G50320", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G50320", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824194", "url": "https://www.ncbi.nlm.nih.gov/gene/824194", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G50320", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G50320", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_190601", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190601", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G50320", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G50320", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J0L0", "url": "https://www.uniprot.org/uniprotkb/F4J0L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J0L0-1", "url": "https://www.uniprot.org/uniprotkb/F4J0L0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLETKNTKRDLLYGIDAPTRTTIPIKDLANAKPTKTQEKDLSEEHPLNKMGRDKGWKRRLRKHDVLMQEMSSYTRATSRRLAEERGAEEGGRDVNRSSVKNRNKLQTNHDQRDSKRRVIGISSSEPPKGETYDIKLCQKRIREEAGKAQSDGNR", "length": 155, "header": "tr|F4J0L0-1|F4J0L0_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J0L0-1" }, "isoforms": [ { "isoform_ac": "F4J0L0-1", "url": "https://www.uniprot.org/uniprotkb/F4J0L0/entry#F4J0L0-1", "sequence": { "sequence": "MSLETKNTKRDLLYGIDAPTRTTIPIKDLANAKPTKTQEKDLSEEHPLNKMGRDKGWKRRLRKHDVLMQEMSSYTRATSRRLAEERGAEEGGRDVNRSSVKNRNKLQTNHDQRDSKRRVIGISSSEPPKGETYDIKLCQKRIREEAGKAQSDGNR", "length": 155, "header": "tr|F4J0L0-1|F4J0L0_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J0L0-1" }, "locus": { "chromosome": "3", "start_pos": 18653731, "end_pos": 18654717, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G50320.1", "url": "https://www.ensemblgenomes.org/id/AT3G50320.1" }, { "database": "Ensembl Peptide", "id": "AT3G50320.1", "url": "https://www.ensemblgenomes.org/id/AT3G50320.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso 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"", "url": "https://www.uniprot.org/uniprotkb/F4J139", "locus": {} } ], "crossref": [ { "id": "F4J139", "url": "https://alphafold.ebi.ac.uk/entry/F4J139", "database": "AlphaFoldDB", "categories": [] }, { "id": "821253", "url": "https://www.ncbi.nlm.nih.gov/gene/821253", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G03440", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G03440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MCESDRN", "url": 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"https://www.orthodb.org/?gene=F4J153", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21243", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21243", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12070", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12070", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT3G03570", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G03570", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J153", "url": "https://www.uniprot.org/uniprotkb/F4J153", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J153-1", "url": "https://www.uniprot.org/uniprotkb/F4J153-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQQISGNNNIPLSEVYWSLVNKADKKFSKIRDLPFYERSRYENYFFKVFKVYTQLWKFQQENRQKLVEAGLKRWEIGEIASRIAQLYYGHYMRTSDAGYLSESYVFYEAILTREYFKDGLFQDLNIANKQLRFLARFLMVCLVLGRREMVHQLVDQFKRLIDECKRTFQETDFKEWKVVAQEIVRFLKSDTAFMNIRPLRYSLVLDPNLDAGTPRASRSLRLTDAILSSYYCNEVKYSELTLDSFRMLQCLEWEPSGSLYQSTGAKMGQNAPVGVARINSQSMNDPTLPPNPRKAVLYRPSITHFLAVLATICEELPSHGILLLYLSASGKIGQISSSPLSARSATSVEENILRDFESHTIKQETEPSLQITPSGQSLRQISEDAVSTPCGLSFGSHGLTGSSYIYPSDLVPFTRKPLFIIIDSDSSTVFKNICGAEKGEPAALLLSPSHTPPLISADFSRQPSGSLFTIFLTSPVQAFCLLSEISASDMETDIFTKAEKLLSSSMNEWASTLATSDTLHPVWSQILKDPFLRRLLLRFIFCRAVLALYTPVFNNKQNQPECCPSLPESLLPTAPAVQSAVFQMANVFGATSKFTIPQDITMLESF", "length": 607, "header": "tr|F4J153-1|F4J153_ARATH Isoform 1 of Signal transducer, putative (DUF3550/UPF0682) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J153-1" }, "isoforms": [ { "isoform_ac": "F4J153-1", "url": "https://www.uniprot.org/uniprotkb/F4J153/entry#F4J153-1", "sequence": { "sequence": "MSQQISGNNNIPLSEVYWSLVNKADKKFSKIRDLPFYERSRYENYFFKVFKVYTQLWKFQQENRQKLVEAGLKRWEIGEIASRIAQLYYGHYMRTSDAGYLSESYVFYEAILTREYFKDGLFQDLNIANKQLRFLARFLMVCLVLGRREMVHQLVDQFKRLIDECKRTFQETDFKEWKVVAQEIVRFLKSDTAFMNIRPLRYSLVLDPNLDAGTPRASRSLRLTDAILSSYYCNEVKYSELTLDSFRMLQCLEWEPSGSLYQSTGAKMGQNAPVGVARINSQSMNDPTLPPNPRKAVLYRPSITHFLAVLATICEELPSHGILLLYLSASGKIGQISSSPLSARSATSVEENILRDFESHTIKQETEPSLQITPSGQSLRQISEDAVSTPCGLSFGSHGLTGSSYIYPSDLVPFTRKPLFIIIDSDSSTVFKNICGAEKGEPAALLLSPSHTPPLISADFSRQPSGSLFTIFLTSPVQAFCLLSEISASDMETDIFTKAEKLLSSSMNEWASTLATSDTLHPVWSQILKDPFLRRLLLRFIFCRAVLALYTPVFNNKQNQPECCPSLPESLLPTAPAVQSAVFQMANVFGATSKFTIPQDITMLESF", "length": 607, "header": "tr|F4J153-1|F4J153_ARATH Isoform 1 of Signal transducer, putative (DUF3550/UPF0682) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J153-1" }, "locus": { "chromosome": "3", "start_pos": 856876, "end_pos": 860469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G03570.1", "url": "https://www.ensemblgenomes.org/id/AT3G03570.1" }, { "database": "Ensembl Peptide", "id": "AT3G03570.1", "url": "https://www.ensemblgenomes.org/id/AT3G03570.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J153", "url": "https://www.uniprot.org/uniprotkb/F4J153" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "F4J153", "url": "https://www.uniprot.org/uniprotkb/F4J153" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "F4J153", "url": "https://www.uniprot.org/uniprotkb/F4J153" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "F4J153", "url": "https://www.uniprot.org/uniprotkb/F4J153" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J153", "url": "https://www.uniprot.org/uniprotkb/F4J153" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G03570", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G03570", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J153", "url": "https://www.uniprot.org/uniprotkb/F4J153" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F4J153", "url": "https://www.uniprot.org/uniprotkb/F4J153" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F4J153", "url": "https://www.uniprot.org/uniprotkb/F4J153" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J153-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 607, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J153-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J153" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J173-1", "uniprot_ac": "F4J173", "uniprot_id": "F4J173_ARATH", "mass": { "chemical_mass": 33071.0, "monoisotopic_mass": 33071.0 }, "refseq": { "ac": "NP_001154587", "name": "F-box/kelch-repeat protein, putative (DUF295)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154587" }, "gene_names": [ { "name": "ATFDB18", "type": "recommended", "evidence": [ { "id": "F4J173", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J173" } ] } ], "protein_names": [ { "name": "F-box/kelch-repeat protein, putative (DUF295)", "type": "synonym", "evidence": [ { "id": "NP_001154587", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154587" }, { "id": "F4J173", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J173/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J173", "url": "https://www.uniprot.org/uniprotkb/F4J173" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ATFDB18", "url": "https://www.uniprot.org/uniprotkb/F4J173", "locus": {} } ], "crossref": [ { "id": "F4J173", "url": "https://alphafold.ebi.ac.uk/entry/F4J173", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G03726", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G03726", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "6240432", "url": "https://www.ncbi.nlm.nih.gov/gene/6240432", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G03726", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G03726", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IFAYRKN", "url": "https://omabrowser.org/oma/group/IFAYRKN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR44259", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44259", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44259:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44259:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03478", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03478", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154587", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154587", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G03726", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G03726", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J172", "url": "https://www.uniprot.org/uniprotkb/F4J172", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J172-1", "url": "https://www.uniprot.org/uniprotkb/F4J172-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J173", "url": "https://www.uniprot.org/uniprotkb/F4J173", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J173-1", "url": "https://www.uniprot.org/uniprotkb/F4J173-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLKKEMWDSNEKTCDDSNQPILVVDLIRSILERLSFVDFHRARCISSLWYTASESCIGGPSTPWIILFPNEFVERNNDSYYNNDFHVLNLFTRERIPLPSLESTDGFPMNITNRLDTAVLWVDEKSRDYLVAWSYGDIFAYRKNGDGNNSWKVIEPLKNQRCVDMVCKESKLYVFSDTRVTVFDFSRSDSPMECAILVIASRVEPHPGTFLFFVYKLDPKSSKWSIIKSIGDEALILDLGIIVAAKDGVMKNCIYLVMIIFISTVGLVYAVITDARWFFPTIGGKCLL", "length": 289, "header": "tr|F4J173-1|F4J173_ARATH Isoform 1 of F-box/kelch-repeat protein, putative (DUF295) OS=Arabidopsis thaliana OX=3702 GN=ATFDB18 PE=4 SV=1 CANONICAL=F4J173-1" }, "isoforms": [ { "isoform_ac": "F4J172-1", "url": "https://www.uniprot.org/uniprotkb/F4J173/entry#F4J172-1", "sequence": { "sequence": "MSLKKEMWDSNEKTCDDSNQPILVVDLIRSILERLSFVDFHRARCISSLWYTASESCIGGPSTPWIILFPNEFVERNNDSYYNNDFHVLNLFTRERIPLPSLESTDGFPMNITNRLDTANGDGNNSWKVIEPLKNQRCVDMVCKESKLYVFSDTRVTVFDFSRSDSPMECAILVIASRVEPHPGTFLFFVYKLDPKSSKWSIIKSIGDEALILDLGIIVAAKDGVMKNCIYLVMIIFISTVGLVYAVITDARWFFPTIGGKCLL", "length": 264, "header": "tr|F4J172-1|F4J173_ARATH Computationally mapped isoform of F-box/kelch-repeat protein, putative (DUF295) OS=Arabidopsis thaliana OX=3702 GN=ATFDB18 PE=4 SV=1 CANONICAL=F4J173-1" }, "locus": { "chromosome": "3", "start_pos": 933341, "end_pos": 934464, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G03726.2", "url": "https://www.ensemblgenomes.org/id/AT3G03726.2" }, { "database": "Ensembl Peptide", "id": "AT3G03726.2", "url": "https://www.ensemblgenomes.org/id/AT3G03726.2" } ] } }, { "isoform_ac": "F4J173-1", "url": "https://www.uniprot.org/uniprotkb/F4J173/entry#F4J173-1", "sequence": { "sequence": "MSLKKEMWDSNEKTCDDSNQPILVVDLIRSILERLSFVDFHRARCISSLWYTASESCIGGPSTPWIILFPNEFVERNNDSYYNNDFHVLNLFTRERIPLPSLESTDGFPMNITNRLDTAVLWVDEKSRDYLVAWSYGDIFAYRKNGDGNNSWKVIEPLKNQRCVDMVCKESKLYVFSDTRVTVFDFSRSDSPMECAILVIASRVEPHPGTFLFFVYKLDPKSSKWSIIKSIGDEALILDLGIIVAAKDGVMKNCIYLVMIIFISTVGLVYAVITDARWFFPTIGGKCLL", "length": 289, "header": "tr|F4J173-1|F4J173_ARATH Isoform 1 of F-box/kelch-repeat protein, putative (DUF295) OS=Arabidopsis thaliana OX=3702 GN=ATFDB18 PE=4 SV=1 CANONICAL=F4J173-1" }, "locus": { "chromosome": "3", "start_pos": 933341, "end_pos": 934464, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G03726.1", "url": "https://www.ensemblgenomes.org/id/AT3G03726.1" }, { "database": "Ensembl Peptide", "id": "AT3G03726.1", "url": "https://www.ensemblgenomes.org/id/AT3G03726.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J172", "url": "https://www.uniprot.org/uniprotkb/F4J172" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J172", "url": "https://www.uniprot.org/uniprotkb/F4J172" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G03726", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G03726", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J173", "url": "https://www.uniprot.org/uniprotkb/F4J173" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J173-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 289, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J173-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J173" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J173", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J173" }, { "id": "PF03478", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03478" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KIB1-4 beta-propeller", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 258, "start_aa": "Thr", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 149, "end_pos": 151 }, { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J1A6-1", "uniprot_ac": "F4J1A6", "uniprot_id": "F4J1A6_ARATH", "mass": { "chemical_mass": 44444.0, "monoisotopic_mass": 44444.0 }, "refseq": { "ac": "NP_001189849", "name": "POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189849" }, "gene_names": [], "protein_names": [ { "name": "POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein", "type": "synonym", "evidence": [ { "id": "NP_001189849", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189849" }, { "id": "F4J1A6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J1A6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J1A6", "url": "https://www.uniprot.org/uniprotkb/F4J1A6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J1A6", "locus": {} } ], "crossref": [ { "id": "F4J1A6", "url": "https://alphafold.ebi.ac.uk/entry/F4J1A6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G09730", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G09730", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820130", "url": "https://www.ncbi.nlm.nih.gov/gene/820130", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040348", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040348", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G09730", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G09730", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FRWGLGF", "url": "https://omabrowser.org/oma/group/FRWGLGF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33476", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33476", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33476:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33476:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001189849", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189849", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G09730", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G09730", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J1A6", "url": "https://www.uniprot.org/uniprotkb/F4J1A6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J1A6-1", "url": "https://www.uniprot.org/uniprotkb/F4J1A6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J1A7", "url": "https://www.uniprot.org/uniprotkb/F4J1A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J1A7-1", "url": "https://www.uniprot.org/uniprotkb/F4J1A7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SF30", "url": "https://www.uniprot.org/uniprotkb/Q9SF30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SF30-1", "url": "https://www.uniprot.org/uniprotkb/Q9SF30-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWQVILGAAIAGSTGFVAKRLFNPFSRDSPTPENYAEEQEPVTPPVSIGFLDSPCDKTNGVFRFSSSGSTVNSGSGSGSSPGFRKSSGVKCRVRVRGLMKKKKKKNSGGCEIEKRSGNVGAFEMKSEVCSKKTKTLGAASASKHHSSFSSALGVCMMYMMSAEKGEISKLHAATEETTKVIQELKDELSRIKSLQGFKFRGCAASSEKSGQIDLNRSEMVSRVSLDIKSGNDGEYASSVLTEEPEQEAVEMEQLEMELESELQKLNLAETSDVMEECKDLVNGAESYQCGGISASELDKKLSHLLIEQQEGQINELEAELQTTQSKLQEKEAELQALKVCVRRLTEFPLLDRSDDEHEEDLNQDLSVSWSQHNKTDHEARKQIIGMKRPMEFVSSSHAKVVVCAN", "length": 405, "header": "tr|F4J1A6-1|F4J1A6_ARATH Isoform 1 of POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J1A6-1" }, "isoforms": [ { "isoform_ac": "F4J1A6-1", "url": "https://www.uniprot.org/uniprotkb/F4J1A6/entry#F4J1A6-1", "sequence": { "sequence": "MWQVILGAAIAGSTGFVAKRLFNPFSRDSPTPENYAEEQEPVTPPVSIGFLDSPCDKTNGVFRFSSSGSTVNSGSGSGSSPGFRKSSGVKCRVRVRGLMKKKKKKNSGGCEIEKRSGNVGAFEMKSEVCSKKTKTLGAASASKHHSSFSSALGVCMMYMMSAEKGEISKLHAATEETTKVIQELKDELSRIKSLQGFKFRGCAASSEKSGQIDLNRSEMVSRVSLDIKSGNDGEYASSVLTEEPEQEAVEMEQLEMELESELQKLNLAETSDVMEECKDLVNGAESYQCGGISASELDKKLSHLLIEQQEGQINELEAELQTTQSKLQEKEAELQALKVCVRRLTEFPLLDRSDDEHEEDLNQDLSVSWSQHNKTDHEARKQIIGMKRPMEFVSSSHAKVVVCAN", "length": 405, "header": "tr|F4J1A6-1|F4J1A6_ARATH Isoform 1 of POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J1A6-1" }, "locus": { "chromosome": "3", "start_pos": 2983868, "end_pos": 2986455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G09730.2", "url": "https://www.ensemblgenomes.org/id/AT3G09730.2" }, { "database": "Ensembl Peptide", "id": "AT3G09730.2", "url": "https://www.ensemblgenomes.org/id/AT3G09730.2" } ] } }, { "isoform_ac": "F4J1A7-1", "url": "https://www.uniprot.org/uniprotkb/F4J1A6/entry#F4J1A7-1", "sequence": { "sequence": "MWQVILGAAIAGSTGFVAKRLFNPFSRDSPTPENYAEEQEPVTPPVSIGFLDSPCDKTNGVFRFSSSGSTVNSGSGSGSSPGFRKSSGVKCRVRVRGLMKKKKKKNSGGCEIEKRSGNVGAFEMKSEVCSKKTKTLGAASASKHHSSFSSALGVCMMYMMSAEKGEISKLHAATEETTKVIQELKDELSRIKSLQGFKFRGCAASSEKSGQIDLNRSEMVSRVSLDIKSGNDGEYASSVLTEEPEQEAVEMEQLEMELESELQKLNLAETSDVMEECKDLVNGAESYQCGGISASELDKKLSHLLIEQQEGQINELEAELQTTQSKLQEKEAELQALKVCVRRLTEFPLLDRSDDEHEEDLNQDLSVSWSQHNKTDHEARKQIIGMKRPMESSCIHV", "length": 397, "header": "tr|F4J1A7-1|F4J1A7_ARATH Computationally mapped isoform of POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J1A6-1" }, "locus": { "chromosome": "3", "start_pos": 2983863, "end_pos": 2986594, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G09730.1", "url": "https://www.ensemblgenomes.org/id/AT3G09730.1" }, { "database": "Ensembl Peptide", "id": "AT3G09730.1", "url": "https://www.ensemblgenomes.org/id/AT3G09730.1" } ] } }, { "isoform_ac": "Q9SF30-1", "url": "https://www.uniprot.org/uniprotkb/F4J1A6/entry#Q9SF30-1", "sequence": { "sequence": "MWQVILGAAIAGSTGFVAKRLFNPFSRDSPTPENYAEEQEPVTPPVSIGFLDSPCDKTNGVFRFSSSGSTVNSGSGSGSSPGFRKSSGVKCRVRVRGLMKKKKKKNSGGCEIEKRSGNVGAFEMKSEVCSKKTKTLGAASASKRGSCYSNQDHSSFSSALGVCMMYMMSAEKGEISKLHAATEETTKVIQELKDELSRIKSLQGFKFRGCAASSEKSGQIDLNRSEMVSRVSLDIKSGNDGEYASSVLTEEPEQEAVEMEQLEMELESELQKLNLAETSDVMEECKDLVNGAESYQCGGISASELDKKLSHLLIEQQEGQINELEAELQTTQSKLQEKEAELQALKVCVRRLTEFPLLDRSDDEHEEDLNQDLSVSWSQHNKTDHEARKQIIGMKRPMESSCIHV", "length": 405, "header": "tr|Q9SF30-1|F4J1A6_ARATH Computationally mapped isoform of POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J1A6-1" }, "locus": { "chromosome": "3", "start_pos": 2983860, "end_pos": 2986593, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G09730.3", "url": 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T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9SF30", "url": "https://www.uniprot.org/uniprotkb/Q9SF30" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9SF30", "url": "https://www.uniprot.org/uniprotkb/Q9SF30" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G09730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G09730", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", 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M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J1B0", "url": "https://www.uniprot.org/uniprotkb/F4J1B0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J1B0", "url": "https://www.uniprot.org/uniprotkb/F4J1B0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G09750", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G09750", "resource": "KEGG Pathway" 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{ "sequence": "MEEDDEPMAPNPKKIDESNKELKELESVHVKHKKRQEMLRNRELSDKGRKSCSNHLYESMKQRSSESGKEVKLGCEEQKKHRKKKTMSMSEKRHHDEKDPRRSLEVAGSSDGWNKTNITCCGFGSGVITGFGLEPPDGLRAQMKNVFLVACKQPDKRLLSSNQLIRQRALHMVGTEKFEELVVTLDGALFEKYGTMSGDSIELSNIVDMLSNIREKIPNAVRQYRAAENKVSHLEMGLAKAKERYWL", "length": 247, "header": "tr|F4J1Q3-1|F4J1Q3_ARATH Isoform 1 of Structural maintenance of chromosomes protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J1Q3-1" }, "locus": { "chromosome": "3", "start_pos": 10957887, "end_pos": 10959610, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G28925.1", "url": "https://www.ensemblgenomes.org/id/AT3G28925.1" }, { "database": "Ensembl Peptide", "id": "AT3G28925.1", "url": "https://www.ensemblgenomes.org/id/AT3G28925.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", 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Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J1Q3", "url": "https://www.uniprot.org/uniprotkb/F4J1Q3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes 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"https://www.uniprot.org/uniprotkb/F4J1S7", "locus": {} } ], "crossref": [ { "id": "F4J1S7", "url": "https://alphafold.ebi.ac.uk/entry/F4J1S7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G29080", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G29080", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822555", "url": "https://www.ncbi.nlm.nih.gov/gene/822555", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G29080", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29080", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_189552", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189552", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G29080", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G29080", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J1S7", "url": "https://www.uniprot.org/uniprotkb/F4J1S7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J1S7-1", "url": "https://www.uniprot.org/uniprotkb/F4J1S7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDGDKKLEPATKGRTGGRGKKAPKGFGEKLEVIKEGWERDLFRDWGGAEVVETGMRGMMGVKAGVTEGWEDKQAKVLEVGVNAEVAGDRIGVFKEGGGWATKAVSLPRGSLAVETAEEVGISELSLPLLVVAAEPLLFLVLGTEDFGGGPTGGGSCKQFLTIWPSSLQTLACDTFRLTRFTVKSSVSFGSPTSPETKLIPSLRRSTIKVAYDEIFMELSPSLKHCIRNVSSRVLGTEADGGLLEEGALIRGDCPAEGAAAAAASVDEVGPPGVIGGEGLEGIGAEGNIGLEVDFGLSIVKVSATLSCIVAVIPDLEEFETASGQTEIGVSTRCISTSVVVGSEATTNTEPTTTGSRTRAVCNESFGVLEELEDREGNWDRDKIGEEGSGGQEGEAEEGSGYHQRWEALDSRRKHDHSRTSGSALGTGTERKKKKEHTIPDKKTI", "length": 445, "header": "tr|F4J1S7-1|F4J1S7_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J1S7-1" }, "isoforms": [ { "isoform_ac": "F4J1S7-1", "url": "https://www.uniprot.org/uniprotkb/F4J1S7/entry#F4J1S7-1", "sequence": { "sequence": "MTDGDKKLEPATKGRTGGRGKKAPKGFGEKLEVIKEGWERDLFRDWGGAEVVETGMRGMMGVKAGVTEGWEDKQAKVLEVGVNAEVAGDRIGVFKEGGGWATKAVSLPRGSLAVETAEEVGISELSLPLLVVAAEPLLFLVLGTEDFGGGPTGGGSCKQFLTIWPSSLQTLACDTFRLTRFTVKSSVSFGSPTSPETKLIPSLRRSTIKVAYDEIFMELSPSLKHCIRNVSSRVLGTEADGGLLEEGALIRGDCPAEGAAAAAASVDEVGPPGVIGGEGLEGIGAEGNIGLEVDFGLSIVKVSATLSCIVAVIPDLEEFETASGQTEIGVSTRCISTSVVVGSEATTNTEPTTTGSRTRAVCNESFGVLEELEDREGNWDRDKIGEEGSGGQEGEAEEGSGYHQRWEALDSRRKHDHSRTSGSALGTGTERKKKKEHTIPDKKTI", "length": 445, "header": "tr|F4J1S7-1|F4J1S7_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J1S7-1" }, "locus": { "chromosome": "3", "start_pos": 11069352, "end_pos": 11071376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G29080.1", "url": "https://www.ensemblgenomes.org/id/AT3G29080.1" }, { "database": "Ensembl Peptide", "id": "AT3G29080.1", "url": "https://www.ensemblgenomes.org/id/AT3G29080.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 152, "start_aa": "Thr", "end_pos": 152, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr152", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J1S7", "url": "https://www.uniprot.org/uniprotkb/F4J1S7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J1S7", "url": "https://www.uniprot.org/uniprotkb/F4J1S7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G29080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J1S7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 445, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J1S7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J1S7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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"end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33404:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005yvf", "url": "https://www.rcsb.org/structure/pdb_00005yvf", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5YVF", "url": "https://www.rcsb.org/structure/5YVF", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF12204", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12204", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21053", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21053", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189563", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189563", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G29185", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G29185", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J1U2", "url": "https://www.uniprot.org/uniprotkb/F4J1U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J1U2-1", "url": "https://www.uniprot.org/uniprotkb/F4J1U2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J2Z0", "url": "https://www.uniprot.org/uniprotkb/F4J2Z0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J2Z0-1", "url": "https://www.uniprot.org/uniprotkb/F4J2Z0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAATSFTCSLPFTPLSKSLKPIRSPILRSDYGTSRSFVIRSMTVQEDDKRTSDESMSIDNLRGFVDLNVGKWTGSFHQFDGNGNLLHKIDTRLSASSYGEDELLSLNQSLYIKQPTSATSVSEEEEEEPEWVEYKIKETNMFTVDKYQQIGFFPKERAFSLRYQTAGMLDTTLRQGVLGEDDTGEESPRNLKLPSRRPSLVCENCLYSKEIDRRARAFHIMDPKGVLEMLIVFLEERGLENLAHPVLDNAQNDAERINPFLGTWKGRSVTKRSGVYGATLSEADTVAVLEMNDKGQVVQDISSTSDEKKVTTNVHWEGKMSKDLVTFAEGYQMTLLPGGMYMGCPCDVSKCVADLKSFHLEFCWLESPSSRQRLIRTYDHEGLAVSSTYFTETKM", "length": 396, "header": "tr|F4J1U2-1|F4J1U2_ARATH Isoform 1 of Glutamate NMDA receptor subunit epsilon-1, putative (DUF3598) OS=Arabidopsis thaliana OX=3702 GN=BFA1 PE=1 SV=1 CANONICAL=F4J1U2-1" }, "isoforms": [ { "isoform_ac": "F4J1U2-1", "url": "https://www.uniprot.org/uniprotkb/F4J1U2/entry#F4J1U2-1", "sequence": { "sequence": "MAAATSFTCSLPFTPLSKSLKPIRSPILRSDYGTSRSFVIRSMTVQEDDKRTSDESMSIDNLRGFVDLNVGKWTGSFHQFDGNGNLLHKIDTRLSASSYGEDELLSLNQSLYIKQPTSATSVSEEEEEEPEWVEYKIKETNMFTVDKYQQIGFFPKERAFSLRYQTAGMLDTTLRQGVLGEDDTGEESPRNLKLPSRRPSLVCENCLYSKEIDRRARAFHIMDPKGVLEMLIVFLEERGLENLAHPVLDNAQNDAERINPFLGTWKGRSVTKRSGVYGATLSEADTVAVLEMNDKGQVVQDISSTSDEKKVTTNVHWEGKMSKDLVTFAEGYQMTLLPGGMYMGCPCDVSKCVADLKSFHLEFCWLESPSSRQRLIRTYDHEGLAVSSTYFTETKM", "length": 396, "header": "tr|F4J1U2-1|F4J1U2_ARATH Isoform 1 of Glutamate NMDA receptor subunit epsilon-1, putative (DUF3598) OS=Arabidopsis thaliana OX=3702 GN=BFA1 PE=1 SV=1 CANONICAL=F4J1U2-1" }, "locus": { "chromosome": "3", "start_pos": 11154918, "end_pos": 11157293, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G29185.1", "url": "https://www.ensemblgenomes.org/id/AT3G29185.1" }, { "database": "Ensembl Peptide", "id": "AT3G29185.1", "url": "https://www.ensemblgenomes.org/id/AT3G29185.1" } ] } }, { "isoform_ac": "F4J2Z0-1", "url": "https://www.uniprot.org/uniprotkb/F4J1U2/entry#F4J2Z0-1", "sequence": { "sequence": "MMCKKLCVLTKFIHIFIDAHWYCCFLYNVSRSNGFCSALPVFVFVLFRLYIKQPTSATSVSEEEEEEPEWVEYKIKETNMFTVDKYQQIGFFPKERAFSLRYQTAGMLDTTLRQGVLGEDDTGEESPRNLKLPSRRPSLVCENCLYSKEIDRRARAFHIMDPKGVLEMLIVFLEERGLENLAHPVLDNAQNDAERINPFLGTWKGRSVTKRSGVYGATLSEADTVAVLEMNDKGQVVQDISSTSDEKKVTTNVHWEGKMSKDLVTFAEGYQMTLLPGGMYMGCPCDVSKCVADLKSFHLEFCWLESPSSRQRLIRTYDHEGLAVSSTYFTETKM", "length": 334, "header": "tr|F4J2Z0-1|F4J2Z0_ARATH Computationally mapped isoform of Glutamate NMDA receptor subunit epsilon-1, putative (DUF3598) OS=Arabidopsis thaliana OX=3702 GN=BFA1 PE=1 SV=2 CANONICAL=F4J1U2-1" }, "locus": { "chromosome": "3", "start_pos": 11154903, "end_pos": 11157275, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G29185.2", "url": "https://www.ensemblgenomes.org/id/AT3G29185.2" }, { "database": "Ensembl Peptide", "id": "AT3G29185.2", "url": "https://www.ensemblgenomes.org/id/AT3G29185.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J1U2", "url": "https://www.uniprot.org/uniprotkb/F4J1U2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J1U2", "url": "https://www.uniprot.org/uniprotkb/F4J1U2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Nucleus-Encoded Protein BFA1 Promotes Efficient Assembly of the Chloroplast ATP Synthase Coupling Factor 1.", "journal": "Plant Cell", "date": "2018", "authors": "Zhang Lin, Pu Hua, Duan Zhikun, Li Yonghong, Liu Bei, Zhang Qiqi, Li Wenjing, Rochaix Jean-David, Liu Lin, Peng Lianwei", "evidence": [ { "database": "UniProtKB", "id": "F4J1U2", "url": "https://www.uniprot.org/uniprotkb/F4J1U2" } ], "reference": [ { "type": "PubMed", "id": "30012777", "url": "https://glygen.org/publication/PubMed/30012777" } ] } ], "pathway": [ { "id": "ath:AT3G29185", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29185", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of protein-containing complex assembly", "id": "GO:0031334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031334", "evidence": [ { "database": "UniProtKB", "id": "F4J1U2", "url": "https://www.uniprot.org/uniprotkb/F4J1U2" } ], "pmid": "" }, { "name": "chloroplast fission", "id": "GO:0010020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010020", "evidence": [ { "database": "UniProtKB", "id": "F4J1U2", "url": "https://www.uniprot.org/uniprotkb/F4J1U2" } ], "pmid": "" }, { "name": "chloroplast proton-transporting ATP synthase complex assembly", "id": "GO:0033614", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033614", "evidence": [ { "database": "UniProtKB", "id": "F4J1U2", "url": "https://www.uniprot.org/uniprotkb/F4J1U2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4J1U2", "url": "https://www.uniprot.org/uniprotkb/F4J1U2" } ], "pmid": "" }, { "name": "chloroplast stroma", "id": "GO:0009570", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009570", "evidence": [ { "database": "UniProtKB", "id": "F4J1U2", "url": "https://www.uniprot.org/uniprotkb/F4J1U2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF21053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Biogenesis factor required for ATP synthase 1-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 257, "end_pos": 396, "start_aa": "Arg", "end_aa": "Met", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4J1U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J1U2" }, { "id": "PF12204", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12204" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF3598", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 239, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J1W7-1", "uniprot_ac": "F4J1W7", "uniprot_id": "F4J1W7_ARATH", "mass": { "chemical_mass": 22372.0, "monoisotopic_mass": 22372.0 }, "refseq": { "ac": "NP_683678", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683678" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "F4J1W7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J1W7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_683678", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683678" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], 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"binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J2C6-1", "uniprot_ac": "F4J2C6", "uniprot_id": "F4J2C6_ARATH", "mass": { "chemical_mass": 118286.0, "monoisotopic_mass": 118286.0 }, "refseq": { "ac": "NP_187029", "name": "ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187029" }, "gene_names": [ { "name": "F20H23.18", "type": "synonym", "evidence": [ { "id": "NP_187029", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187029" }, { "id": "F4J2C6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J2C6" } ] }, { "name": "F20H23_18", "type": "synonym", "evidence": [ { "id": "NP_187029", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187029" }, { "id": "F4J2C6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J2C6" } ] } ], "protein_names": [ { "name": "Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein", "type": "synonym", "evidence": [ { "id": "F4J2C6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J2C6/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein", "type": "synonym", "evidence": [ { "id": "NP_187029", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187029" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J2C6", "url": "https://www.uniprot.org/uniprotkb/F4J2C6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J2C6", "locus": {} } ], "crossref": [ { "id": "F4J2C6", "url": "https://alphafold.ebi.ac.uk/entry/F4J2C6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G03790", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G03790", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "821145", "url": "https://www.ncbi.nlm.nih.gov/gene/821145", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G03790", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G03790", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KNEGPAW", "url": "https://omabrowser.org/oma/group/KNEGPAW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22872", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22872", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22872:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22872:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00415", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00415", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_187029", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187029", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G03790", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G03790", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J2C4", "url": "https://www.uniprot.org/uniprotkb/F4J2C4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J2C4-1", "url": "https://www.uniprot.org/uniprotkb/F4J2C4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J2C5", "url": "https://www.uniprot.org/uniprotkb/F4J2C5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J2C5-1", "url": "https://www.uniprot.org/uniprotkb/F4J2C5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J2C6", "url": "https://www.uniprot.org/uniprotkb/F4J2C6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J2C6-1", "url": "https://www.uniprot.org/uniprotkb/F4J2C6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELSVSPQTQKMNLQTPRKSSLSGSRKDLWFAIREGSLVDVDSALSILKKTGGNINLRNAYGLTPLHIAVWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLIDSGASFTLEDIKLRTPVDLVSGPVAQVIGEQQSSEVFSWGNGANYQLGTGNQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTWGHRLVTPRRVIISRNLKKAGNTLLNFHRRRPLRLTAIAAGMVHSLALAEDGAFFYWVSSDSNLRCQQLHSLHGKTVVSISAGKYWASAVTSTGEVYMWDGKNGKDIAPSLSRLHNLKRATTVAVGETHLLVVGSLYHPAYAPIVLKKSQTLQADKCREEENEELDEGFMFDDVESVNVLQSVQYDNPKERIVPSLKSLCEKVAAECIVEPRNAIQLLEIADSLGAEDLKKYCEDIVIRNLDFILTFSPQSIANTSPDVLANLEKLLDDRSSETWSSRPLPTPTATFPVVIDSEEEESESDILRTRDSHVKHFSSIGGTRMDSFLQPEDELTQHNSKEVRALRKKLQQIEILEAKQSRGQLLDGQQIAKLQKKLDIESSLVELGIPVEEFPEAKATTALPLEGKANKKGKKKKKGNQRFVQVETFPEFGEVKVEIDTMQDKEIEEICEAIKPKGGKTMLDTTMISGFPKESDFVSLSQKKDNPPDSPRSKKLATAANKKKNRKGGLSMFLTGALDDVPKPVVAPPPRPKIEGPVWGGAKISKGLSSLRDIQDEQSKTRSHEPVRTTKNQSGDDSPGKSEGKILLSSFLTSKPIPMEPAKSLQQSDVEKGTPPWASSETPRKLSRPSLRDIQMQEVKKQQSLSHSPKTKTSGFTVATGQGSPSDSPGTNRWFKPEIDAPSAIRSIQIEEKAMKDLRRFYSSVKVVRNQP", "length": 1078, "header": "tr|F4J2C6-1|F4J2C6_ARATH Isoform 1 of Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J2C6-1" }, "isoforms": [ { "isoform_ac": "F4J2C4-1", "url": "https://www.uniprot.org/uniprotkb/F4J2C6/entry#F4J2C4-1", "sequence": { "sequence": 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"length": 1099, "header": "tr|F4J2C4-1|F4J2C6_ARATH Computationally mapped isoform of Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J2C6-1" }, "locus": { "chromosome": "3", "start_pos": 961997, "end_pos": 968149, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G03790.3", "url": "https://www.ensemblgenomes.org/id/AT3G03790.3" }, { "database": "Ensembl Peptide", "id": "AT3G03790.3", "url": "https://www.ensemblgenomes.org/id/AT3G03790.3" } ] } }, { "isoform_ac": "F4J2C5-1", "url": "https://www.uniprot.org/uniprotkb/F4J2C6/entry#F4J2C5-1", "sequence": { "sequence": "MELSVSPQTQKMNLQTPRKSSLSGSRKDLWFAIREGSLVDVDSALSILKKTGGNINLRNAYGLTPLHIAVWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLIDSGASFTLEDIKLRTPVDLVSGPVAQVIGEQQSSVATEVFSWGNGANYQLGTGNQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTWGHRLVTPRRVIISRNLKKAGNTLLNFHRRRPLRLTAIAAGMVHSLALAEDGAFFYWVSSDSNLRCQQLHSLHGKTVVSISAGKYWASAVTSTGEVYMWDGKNGKDIAPSLSRLHNLKRATTVAVGETHLLVVGSLYHPAYAPIVLKKSQTLQADKCREEENEELDEGFMFDDVESVNVLQSVQYDNPKERIVPSLKSLCEKVAAECIVEPRNAIQLLEIADSLGAEDLKKYCEDIVIRNLDFILTFSPQSIANTSPDVLANLEKLLDDRSSETWSSRPLPTPTATFPVVIDSEEEESESDILRTRDSHVKHFSSIGGTRMDSFLQPEDELTQHNSKEVRALRKKLQQIEILEAKQSRGQLLDGQQIAKLQKKLDIESSLVELGIPVEEFPEAKATTALPLEGKANKKGKKKKKGNQRFVQVETFPEFGEVKVEIDTMQDKEIEEICEAIKPKGGKTMLDTTMISGFPKESDFVSLSQKKDNPPDSPRSKKLATAANKKKNRKGGLSMFLTGALDDVPKPVVAPPPRPKIEGPVWGGAKISKGLSSLRDIQDEQSKTRSHEPVRTTKNQSGDDSPGKSEGKILLSSFLTSKPIPMEPAKSLQQSDVEKGTPPWASSETPRKLSRPSLRDIQMQEVKKQQSLSHSPKTKTSGFTVATGQGSPSDSPGTNRWFKPEIDAPSAIRSIQIEEKAMKDLRRFYSSVKVVRNQP", "length": 1081, "header": "tr|F4J2C5-1|F4J2C5_ARATH Computationally mapped isoform of Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J2C6-1" }, "locus": { "chromosome": "3", "start_pos": 961750, "end_pos": 968152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G03790.2", "url": "https://www.ensemblgenomes.org/id/AT3G03790.2" }, { "database": "Ensembl Peptide", "id": "AT3G03790.2", "url": "https://www.ensemblgenomes.org/id/AT3G03790.2" } ] } }, { "isoform_ac": "F4J2C6-1", "url": "https://www.uniprot.org/uniprotkb/F4J2C6/entry#F4J2C6-1", "sequence": { "sequence": "MELSVSPQTQKMNLQTPRKSSLSGSRKDLWFAIREGSLVDVDSALSILKKTGGNINLRNAYGLTPLHIAVWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASVLIDSGASFTLEDIKLRTPVDLVSGPVAQVIGEQQSSEVFSWGNGANYQLGTGNQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTWGHRLVTPRRVIISRNLKKAGNTLLNFHRRRPLRLTAIAAGMVHSLALAEDGAFFYWVSSDSNLRCQQLHSLHGKTVVSISAGKYWASAVTSTGEVYMWDGKNGKDIAPSLSRLHNLKRATTVAVGETHLLVVGSLYHPAYAPIVLKKSQTLQADKCREEENEELDEGFMFDDVESVNVLQSVQYDNPKERIVPSLKSLCEKVAAECIVEPRNAIQLLEIADSLGAEDLKKYCEDIVIRNLDFILTFSPQSIANTSPDVLANLEKLLDDRSSETWSSRPLPTPTATFPVVIDSEEEESESDILRTRDSHVKHFSSIGGTRMDSFLQPEDELTQHNSKEVRALRKKLQQIEILEAKQSRGQLLDGQQIAKLQKKLDIESSLVELGIPVEEFPEAKATTALPLEGKANKKGKKKKKGNQRFVQVETFPEFGEVKVEIDTMQDKEIEEICEAIKPKGGKTMLDTTMISGFPKESDFVSLSQKKDNPPDSPRSKKLATAANKKKNRKGGLSMFLTGALDDVPKPVVAPPPRPKIEGPVWGGAKISKGLSSLRDIQDEQSKTRSHEPVRTTKNQSGDDSPGKSEGKILLSSFLTSKPIPMEPAKSLQQSDVEKGTPPWASSETPRKLSRPSLRDIQMQEVKKQQSLSHSPKTKTSGFTVATGQGSPSDSPGTNRWFKPEIDAPSAIRSIQIEEKAMKDLRRFYSSVKVVRNQP", 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT3G22980", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FARCDIQ", "url": "https://omabrowser.org/oma/group/FARCDIQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR42908", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42908", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42908:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42908:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00009", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00009", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22042", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22042", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001319621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319621", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G22980", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G22980", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J2T9-1", "url": "https://www.uniprot.org/uniprotkb/F4J2T9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDESEGRKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLIFELRLSPMEAYTRLIRIVHEVNGIVSAYKSEKYLSDVDSILASPSGELSAESLELLEDDEEVTFQPQKGNVVFVCALDGWGFGIAEFANFYASKLGASATALQKSLWGPRYYIPKTKMIVGKKNLSAGSKAKPMFVQFVLEPLWQVYEAALDPGGDKAVLEKVIKSFNLSIPPRELQNKDPKNVLQSVMSRWLPLSDAVLSMAVKHLPDPIAAQAYRIPRLVPERKIIGGDDVDSSVLAEAELVRKSIEACDSSSDSPCVVFVSKMFAIPMKMIPQDGNHRERMNGLNDDDSKSESDECFLAFARIFSGVLRAGQRVFVITALYDPLKGESSHKYIQEAELHSLYLMMGQGLTPVTEVKAGNVVAIRGLGPYISKSATLSSTRNCWPLASMEFQVSPTLRVAIEPSDPADMSALMKGLRLLNRADPFVEITVSARGEHVLAAAGEVHLERCVKDLKERFAKVNLEVSPPLVSYRETIEGDGSNLLESLRSLSLNSSDYIEKRTPNGRCIIRVHVMKLPHALTKLLDENTELLGDIIGGKGSHSVKILESQKPSLGENVDPIEELKKQLVEAGVSSSSETEKDREKCKTEWSKLLKRIWALGPREKGPNILFAPDGKRIAEDGSMLVRGSPHVSQRLGFTEDSTETPAEVSETALYSEALTLESSIVSGFQLATASGPLCDEPMWGLAFTIESHLAPAEDVETDKPENFGIFTGQVMTAVKDACRAAVLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILKEEMQEGSSLFTVHAYVPVSESFGFADELRKGTSGGASALMVLSHWEMLEEDPFFVPKTEEEIEEFGDGASVLPNTARKLINAVRRRKGLHVEEKVVQYATKQRTLARKV", "length": 1015, "header": "tr|F4J2T9-1|F4J2T9_ARATH Isoform 1 of Elongation factor-like 1 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J2T9-1" }, "isoforms": [ { "isoform_ac": "F4J2T9-1", "url": "https://www.uniprot.org/uniprotkb/F4J2T9/entry#F4J2T9-1", "sequence": { "sequence": "MDESEGRKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLIFELRLSPMEAYTRLIRIVHEVNGIVSAYKSEKYLSDVDSILASPSGELSAESLELLEDDEEVTFQPQKGNVVFVCALDGWGFGIAEFANFYASKLGASATALQKSLWGPRYYIPKTKMIVGKKNLSAGSKAKPMFVQFVLEPLWQVYEAALDPGGDKAVLEKVIKSFNLSIPPRELQNKDPKNVLQSVMSRWLPLSDAVLSMAVKHLPDPIAAQAYRIPRLVPERKIIGGDDVDSSVLAEAELVRKSIEACDSSSDSPCVVFVSKMFAIPMKMIPQDGNHRERMNGLNDDDSKSESDECFLAFARIFSGVLRAGQRVFVITALYDPLKGESSHKYIQEAELHSLYLMMGQGLTPVTEVKAGNVVAIRGLGPYISKSATLSSTRNCWPLASMEFQVSPTLRVAIEPSDPADMSALMKGLRLLNRADPFVEITVSARGEHVLAAAGEVHLERCVKDLKERFAKVNLEVSPPLVSYRETIEGDGSNLLESLRSLSLNSSDYIEKRTPNGRCIIRVHVMKLPHALTKLLDENTELLGDIIGGKGSHSVKILESQKPSLGENVDPIEELKKQLVEAGVSSSSETEKDREKCKTEWSKLLKRIWALGPREKGPNILFAPDGKRIAEDGSMLVRGSPHVSQRLGFTEDSTETPAEVSETALYSEALTLESSIVSGFQLATASGPLCDEPMWGLAFTIESHLAPAEDVETDKPENFGIFTGQVMTAVKDACRAAVLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILKEEMQEGSSLFTVHAYVPVSESFGFADELRKGTSGGASALMVLSHWEMLEEDPFFVPKTEEEIEEFGDGASVLPNTARKLINAVRRRKGLHVEEKVVQYATKQRTLARKV", "length": 1015, "header": "tr|F4J2T9-1|F4J2T9_ARATH Isoform 1 of Elongation factor-like 1 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J2T9-1" }, "locus": { "chromosome": "3", "start_pos": 8160075, "end_pos": 8163788, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G22980.2", "url": "https://www.ensemblgenomes.org/id/AT3G22980.2" }, { "database": "Ensembl Peptide", "id": "AT3G22980.2", "url": "https://www.ensemblgenomes.org/id/AT3G22980.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 638, "end_pos": 638, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J2T9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J2T9" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Tyr638" }, { "start_pos": 68, "end_pos": 68, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J2T9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J2T9" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser68" }, { "start_pos": 71, "end_pos": 71, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J2T9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J2T9" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Tyr71" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "F4J2T9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J2T9" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "F4J2T9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J2T9" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "F4J2T9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J2T9" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "pathway": [ { "id": "ath:AT3G22980", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G22980", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BT76-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "EFL1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHDDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERVTESQVNPHSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGIRKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILGNIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTPEEIAERRERARRRHAEKLAAAQGQAPVEPTQDGSALEASPKEEEPKGDEQQVLQEGNDQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLQRVPLGFSAPLDGLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCTLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSDGLVTITTPNKLATLCVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1069 }, "evidence": [ { "id": "F4J2T9", "url": "https://omabrowser.org/oma/group/F4J2T9/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7FRL8-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "Efl1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVLNGVDKMIQLQKHTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAISLHYAEGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKLDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETDSQVKTQSEQGDQVYDWSTGLEDADDSQLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILENIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDMTSERVEKLMCTGSQTFESLPLETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKTLPQNKPRPLTQEEIAQRRERARQRHAERLAGTQGQAPQGPTQDGGTLETGPQGDEPRGDEPDVASISPQPVAQEESSQEAFIAFARVFSGIARRGQKIFVLGPKYSPVEFLQRVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIPFRETITKPPKVDMVNEEIGRQQKVAVIHQTKEEQSKIPEGIHVDSDGLITITTPNKLATLSVRAIPLPEEVTQILEENSDLIRSMELLTSSLNEGRNTQGIHQKTQEKIWDFKGKLEQHLIGRKWRNTVDQIWSFGPRKCGPNILVSRSEDFQNSVWSGPAGKESKEASRFRDFGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWELNKCAEQGASDKQNQKQCDLAEEGQEEGKTCHSGDENQEQQDGCSEPFEETSPKGESPVTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEVRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1127 }, "evidence": [ { "id": "F4J2T9", "url": "https://omabrowser.org/oma/group/F4J2T9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9SKN9-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "EFL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHGDKEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAEREAESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGIRKEVLLKTLWGDYYINTKAKKIMKVDQAKGKKPLFVQLILENIWSLYDAVLKKDKEKTDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTQEEIAERRERARRRHAEKLAAAQGQAPVEPTQDAGALEMSPQGEEPKGDEQGVESETPKPVSPEGSEQESFIAFARVFSGVARKGKRIFVLGPKYSPLEFLQQVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCTSPSCPPFIPLNFEATPIVRVAIEPKHPSEMPQLVKGMKLLNQADPCVQVFIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSNGLITMMTPNKLATLSVRALPLPEEVTQILEESSDLIRSMEQLTSSLNEGKNNPQMIHQKTQEKIWEFKGKLEHHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFHNSVWTGLDGKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDLVKERQGEGDTRSGGDEQQELQDYGSEPFEKRASQRGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1070 }, "evidence": [ { "id": "F4J2T9", "url": "https://omabrowser.org/oma/group/F4J2T9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZXJ5-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "Efl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVLSGLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAISLHYAEGSEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILGQINALTGTLFTSKVLEERAERETESQAKSHSEQGDQVYDWSTGLEDVDDSQLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILENIWSLYDAVLKKDKEKVDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDMTSERVEKLMCTGSQTFESLPLETQALKAAFMKCGSEDTAPVIIFVSKMFAVDVKALPQNKPRPLTQEEMAQRRERARQRHAEKLAAAQGQAPQGPTQDGGALETSPQEDEPRGEEPDMTSVSRQPAPQEESSQEAFIAFARVFSGVARRGKKIFVLGPKYSPVDFLQRVPQGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDSVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIPFRETITKPPKVDMVNEEIGRQQKVAVIHQTKEEQSKIPEGILVDSDGLITIPTPNKLATLSVRAIPLPEEVTRILEENSDLIRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVDQIWSFGPRKCGPNILVSRSEDFQSSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWELNKCAEPGASDKQSQGQCDLTGEGQEKSKTCPVGDENQEQQDGYSEPFEETSQKGDSPVIDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1127 }, "evidence": [ { "id": "F4J2T9", "url": "https://omabrowser.org/oma/group/F4J2T9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NZK8-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "EFL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLTSVGKMMGLQQKAAGIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYLDSREDEQVRGITMKSSAISLHFEKGGQEYLINLIDSPGHVDFSSEVSTAVRLCDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKLTPQEAYMHLKNILEQINAVTGSLFTSKVLEERAEKEAESESSSDTAAGDQIYDWSAGLEDTDDSHLYFSPDHGNVVFASAIDGWGFGIEHFAKLYSQKIGIKPAVLLKTLWGDYYLNTKAKKIMKGDQSKGKKPLFVQLVLDNIWSLYEAVMKRDKEKIEKIVTSLGLKIGPRESRHADPKVHLNAICSQWLPISDAVLSMVCSKLPSPLDITAERVEKLMCVGAKTFDSLPPETQELKSAFLRCSSEETAPVIVFVSKMFAVDAKALPHNKPRPLTQEEIAQRRELAKQRHAGKMAANQGKEVSEKPPSENSSEGTGSTGDKKGEEQQLTDQMDVVTSKAAKQEADNKESFIAFARVFSGVVRRGQKIFVLGPKYDPAESLHKLSPQCSATDDLPSVPHMSCCTLENLYLLMGRELEELEEVPAGNVLGIGGLQDFVLKSATLSTSPACPPFTPLNFEATPIVRVAVEPKHPSDMPQLVRGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSAPIIPFRETITRPPKVDMVNEEIGKQQKVAVIHQTKEDQNKIPEGIQVDSDGLVTISTPNKQATLSVRALPLPEEVTRLLEENSDLIRTMEQLSTSLNEDKNAHEINQKTMDKIKEFKQKLEQNLQGRKWRNAVDHIWSFGPRKCGPNILLHKFEGYKNSVWQCLENTEKEVSKYGDFDNSIVSGFQLATLSGPMCEEPLMGVCFTVEKWEMNKVGETLLTKSRDSGECGAVEHQESEDTVSPTSNCTVDTCSENEHEQSSQSVPKSLEKNSKNKGEVLLTDCYGPFSGQLIATMKEACRYALQAKPQRLMAAMYTCEIMATAEVLGRVYAVLSKREGRVLQEEMKEGTDVFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIISSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSRNK", "length": 1139 }, "evidence": [ { "id": "F4J2T9", "url": "https://omabrowser.org/oma/group/F4J2T9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P53893-1", "protein_name": "Ribosome assembly protein 1", "gene_name": "RIA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MPRVESETYKRLQNDPSCIRNICIVAHVDHGKTSLSDSLLASNGIISQRLAGKIRFLDARPDEQLRGITMESSAISLYFRVLRKQEGSDEPLVSEHLVNLIDSPGHIDFSSEVSAASRLCDGAVVLVDVVEGVCSQTVTVLRQCWTEKLKPILVLNKIDRLITELQLTPQEAYIHLSKVIEQVNSVIGSFFANERQLDDLFWREQLEKNENAEYIEKDDSGIYFNPTDNNVIFASAIDGWGFNIGQLAKFYEQKLGAKRENLQKVLWGDFYMDPKTKKIINNKGLKGRSLKPLFTSLILENIWKIYQNIITSRDSEMVEKIAKTLNIKLLARDLRSKDDKQLLRTIMGQWLPVSTAVLLTVIEKLPSPLESQTDRLNTILVSESDTAAMDPRLLKAMKTCDKEGPVSAYVSKMLSIPREELPVESKRIASSDELMERSRKAREEALNAAKHAGMVENMAMMDLNDNSKNTSDLYKRAKDTVMTPEVGEQTKPKPSRNNDVFCVVSEPSSALDLEFEYEGEDDSDSQDNFGLDFVPTDIDPNDPLSSMFEYEEEDPLLESIKQISEDVNDEVDDIFDEKEECLVAFARIYSGTLRVGQEISVLGPKYDPKCPEEHIETAIITHLYLFMGKELVPLDVCPSGNIVGIRGLAGKVLKSGTLIEKGVQGVNLAGVNFHFTPIVRVAVEPANPVEMSKLVRGLKLLDQADPCVHTYVENTGEHILCTAGELHLERCLKDLTERFAGIEITHSEPAIPYRETFLSASDMNPPQNSQLGRGVHELLLSQYKITFRTFPLSGKVTDFLSQHQNSIKNILKTSTSSMDPVIESTGSSFLDKKSLLVAFEEVINQEEKSRELLSGFKVKLAGFGPSRVGCNILLSQDNLLGSLFEGTPAAFEYSDSIKNGFQLAVSEGPLANEPVQGMCVLVESVHKMSQDEIESIEDPRYQQHIVDLSGRLITSTRDAIHEAFLDWSPRIMWAIYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDPFWVPTTEEELEELGDTADRENIARKHMNAIRRRKGLFIEEKVVENAEKQRTLKKN", "length": 1110 }, "evidence": [ { "id": "F4J2T9", "url": "https://omabrowser.org/oma/group/F4J2T9/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54WF2-1", "protein_name": "Ribosome assembly protein 1", "gene_name": "eftud1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPSISPNLLASLQDHTKNIRNICVLAHVDHGKTTLSDCLISSNGIISPEMAGKLRYLDFLEDEQEREITMKASAISLLFQQPSSSSSSNDKESFLINLIDSPGHVDFSSEVSTAVRITDGALVLVDAVEGVCIQTHAVLKQAYQEKVKPCLVLNKIDRLILELHMTPLEAYQHLSKIIEQVNVITGTLTSEEIILKESSEDYIESSDDSNLNFNENIGTEYYFSPQKGNVAFTTAFDGWGFTIKQFIDLCYKKTGIKKEILEKCLWGEYYYHPKEKKIYKSPKGNLMPMFVTFILNSVWEVVKTIVGTPEWIDRDRLDKMISVLNITVGARDLASKDQKIVLKSVLHAWLPLSEAVLSMVCDKLPDPIEGQARRMEKIFKPSKSLSTSSSSSSSSSNQSNVELIEKQKQLLYDTITCNSSDDCEIVAYVAKVFAHNKRGGVQTSTIHRPVPPRRVQPSAVPSQNRQQQLHQDEKDILKIDNMFISSAPSTTNDSTTTTKTTTTSPSSPITSTAKPLDLSTIPTGPIKANNNDEEFIAVVRVFSGVLKKGKTIYVMGPRYDPMNPTHDVYKVEITHLYLLMGSSLEPIDKVPAGNVCGVGGGVGNLVLKSATISSSLMCPPISNMMFVSSPIVKVALEPENISDLPKLLHGLKLLNQADPLVEVYVQETGEHVIVASGELHLERCIRDLKESFAKINVHVSSPIVPFRETIITPTITTPTTSSTITSSSSTTAAATATTTNNSGQQSPPLKEIITVKTANKKVSVKIRAIPLPKNITNLIEQRSQQLRDLFLGGKNTNKELSDNKITKREAEQAEREDFQKELEEELEKSGGDWKNEIKNIWSFGPRHIGPNLLLNHIPGYNLSPYWKHSLQRGIQKKLKKLQKQQQQEKEEIKEEEEEKEEEEKEDEEDEDEKEIEEEEIQEEENSNSEVGSIKLLDGDDKFKRISELDNSIVSGFQLATIAGPLCDEPMMGVCLIVEDIDIIREEGDQQNSDSYGPLSGQMISTVKEGCRMAFQIKPQRLMEALYLCEIQVTSTALGKMYSVLSSRRAQIQKEGVKEGTQIFCIQARLPVVESFGFSQQIMIKTSGAASTQLFFDNYWETIEQDPYYEPTTEEELEDNGVNIASLGNNIARQYMNMIRKRKGLFVEEKLVEHADKQRTLKKNK", "length": 1164 }, "evidence": [ { "id": "F4J2T9", "url": "https://omabrowser.org/oma/group/F4J2T9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7Z2Z2-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "EFL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAISLHYATGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLMKTLWGDYYINMKAKKIMKGDQAKGKKPLFVQLILENIWSLYDAVLKKDKDKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDITAERVERLMCTGSQTFDSFPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTQEEIAQRRERARQRHAEKLAAAQGQAPLEPTQDGSAIETCPKGEEPRGDEQQVESMTPKPVLQEENNQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLRRVPLGFSAPPDGLPQVPHMAYCALENLYLLMGRELEYLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIHISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATLSVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1120 }, "evidence": [ { "id": "F4J2T9", "url": "https://omabrowser.org/oma/group/F4J2T9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C0D5-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "Efl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLSGVDKMIRLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAISLHYAEGHEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQAKPHSEQGEQVYDWSAGLEDVDDSQLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILENIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCHKLPSPLDMTSERVEKLLCTGSQTFESLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDVKALPQNKPRPLTQEEMAQRRERARQRHAEKLAAAQGQTSQGPTQDGGALETSPHEDEPRGDEPDVASVSRQPVSQEESSQEAFIAFARVFSGIARRGKKIFVLGPKYSPVDFLQRVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIPFRETITKPPKVDMVNEEIGRQQKVAVIHQTKEEQSKIPEGIHVDSDGLITIPTPNKLATLSVRAIPLPEEVTRILEENSDLIRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVDQIWSFGPRKCGPNILVSRSEDFQNSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWELNKCAEQGASDKQHQGQCDLAGEGQGGGKTCHVGDENQEQQDVCSEPFEETSQKGDSPVIDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1127 }, "evidence": [ { "id": "F4J2T9", "url": "https://omabrowser.org/oma/group/F4J2T9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "pmid": "" }, { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "pmid": "" }, { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytosolic ribosome assembly", "id": "GO:0042256", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042256", "evidence": [ { "database": "UniProtKB", "id": "F4J2T9", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 634, "end_pos": 636, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J2T9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J2T9" }, { "id": "PS51722", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51722" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tr-type G", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 240, "start_aa": "Arg", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 68, 71, 638 ], "sequon_annotation_sites": [ { "start_pos": 264, "end_pos": 266 }, { "start_pos": 308, "end_pos": 310 }, { "start_pos": 634, "end_pos": 636 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { 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Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J306", "url": "https://www.uniprot.org/uniprotkb/F4J306" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J306", "url": "https://www.uniprot.org/uniprotkb/F4J306" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G29305", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29305", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4J306", "url": "https://www.uniprot.org/uniprotkb/F4J306" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J306-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 126, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J306-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J306" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 98, "end_pos": 100 } ] }, 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"MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650, "header": "tr|F4J311-1|F4J311_ARATH Isoform 1 of Zinc finger (C2H2 type) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J311-1" }, "isoforms": [ { "isoform_ac": "F4J311-1", "url": "https://www.uniprot.org/uniprotkb/F4J311/entry#F4J311-1", "sequence": { "sequence": 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"https://www.ensemblgenomes.org/id/AT3G29340.1" }, { "database": "Ensembl Peptide", "id": "AT3G29340.1", "url": "https://www.ensemblgenomes.org/id/AT3G29340.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G29340", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29340", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "F4J311", "url": "https://omabrowser.org/oma/group/F4J311/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F4J311", "url": "https://www.uniprot.org/uniprotkb/F4J311" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 574, "end_pos": 576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 586, "end_pos": 588, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J311-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 650, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J311-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J311" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J311", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J311" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 70, "start_aa": "His", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 574, "end_pos": 576 }, { "start_pos": 586, "end_pos": 588 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J320-1", "uniprot_ac": "F4J320", "uniprot_id": "F4J320_ARATH", "mass": { "chemical_mass": 25154.0, "monoisotopic_mass": 25154.0 }, "refseq": { "ac": "NP_683606", "name": "dentin sialophosphoprotein-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683606" }, "gene_names": [], "protein_names": [ { "name": "Dentin sialophosphoprotein-like protein", "type": "synonym", "evidence": [ { "id": "F4J320", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J320/entry#names_and_taxonomy" } ] }, { "name": "dentin sialophosphoprotein-like protein", "type": "synonym", "evidence": [ { "id": "NP_683606", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683606" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J320", "url": "https://www.uniprot.org/uniprotkb/F4J320" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J320", "locus": {} } ], "crossref": [ { "id": "F4J320", "url": "https://alphafold.ebi.ac.uk/entry/F4J320", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G29385", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G29385", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822599", "url": "https://www.ncbi.nlm.nih.gov/gene/822599", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G29385", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29385", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PEMQGIY", "url": "https://omabrowser.org/oma/group/PEMQGIY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31267:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31267:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_683606", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683606", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G29385", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G29385", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J320", "url": "https://www.uniprot.org/uniprotkb/F4J320", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J320-1", "url": "https://www.uniprot.org/uniprotkb/F4J320-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLSTRKKRKSSTFLQSPWHKVYLQGSELCHNIRIAEQEWNLATNTLSEKVDTNEAISPSKRRLLSSTHLMQQLLQPAPTFVFLGDNAALNYEIVLYYVSRINLANSCSLKCRSDLDKSINRQTSKTASNQDQQHSLLVNAFNEKIQKLESNFQSLERTTSILDIIFEIQDLERFSMINHLGKFHNRAKTFKRLIPHKYAVAIQMPMNLPEPLHCLPL", "length": 218, "header": "tr|F4J320-1|F4J320_ARATH Isoform 1 of Dentin sialophosphoprotein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J320-1" }, "isoforms": [ { "isoform_ac": "F4J320-1", "url": "https://www.uniprot.org/uniprotkb/F4J320/entry#F4J320-1", "sequence": { "sequence": 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"id": "AT3G29450", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G29450", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822606", "url": "https://www.ncbi.nlm.nih.gov/gene/822606", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G29450", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29450", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TIESCQM", "url": "https://omabrowser.org/oma/group/TIESCQM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11697", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11697", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11697:SF230", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11697:SF230", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189591", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189591", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G29450", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G29450", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J326", "url": "https://www.uniprot.org/uniprotkb/F4J326", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J326-1", 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S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J326", "url": "https://www.uniprot.org/uniprotkb/F4J326" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4J326", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J326" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": 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Peptide", "id": "AT3G29570.1", "url": "https://www.ensemblgenomes.org/id/AT3G29570.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J328", "url": "https://www.uniprot.org/uniprotkb/F4J328" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J328", "url": "https://www.uniprot.org/uniprotkb/F4J328" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G29570", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29570", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J349-1", "uniprot_ac": "F4J349", "uniprot_id": "F4J349_ARATH", "mass": { "chemical_mass": 19917.0, "monoisotopic_mass": 19917.0 }, "refseq": { "ac": "NP_190043", "name": "retrotransposon ORF-1 protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190043" }, "gene_names": [], "protein_names": [ { "name": "Retrotransposon ORF-1 protein", "type": "synonym", "evidence": [ { "id": "F4J349", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J349/entry#names_and_taxonomy" } ] }, { "name": "retrotransposon ORF-1 protein", "type": "synonym", "evidence": [ { "id": "NP_190043", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190043" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J349", "url": "https://www.uniprot.org/uniprotkb/F4J349" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J349", "locus": {} } ], "crossref": [ { "id": "F4J349", "url": "https://alphafold.ebi.ac.uk/entry/F4J349", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G44570", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G44570", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "823582", "url": "https://www.ncbi.nlm.nih.gov/gene/823582", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004312", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004312", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G44570", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G44570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PF03078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190043", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190043", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G44570", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G44570", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J349", "url": "https://www.uniprot.org/uniprotkb/F4J349", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J349-1", "url": "https://www.uniprot.org/uniprotkb/F4J349-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRYWEMDEDVYPKLVKEFIATCRLTYANPENPKASKGKLTFFLNKQHYSKTLFEICDMYGFTKGEAVEFPKSPVVRYVAKLLGSVLYFKPVITVVQEIELPLLFYGVKHLLDAYSDIPAPDTNVAAVLCDTLVKMKNNVPTSAAKSILAANGLDLPDSYQFHQAKKSTVPISRKGR", "length": 177, "header": "tr|F4J349-1|F4J349_ARATH Isoform 1 of Retrotransposon ORF-1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J349-1" }, "isoforms": [ { "isoform_ac": "F4J349-1", "url": "https://www.uniprot.org/uniprotkb/F4J349/entry#F4J349-1", "sequence": { "sequence": "MGRYWEMDEDVYPKLVKEFIATCRLTYANPENPKASKGKLTFFLNKQHYSKTLFEICDMYGFTKGEAVEFPKSPVVRYVAKLLGSVLYFKPVITVVQEIELPLLFYGVKHLLDAYSDIPAPDTNVAAVLCDTLVKMKNNVPTSAAKSILAANGLDLPDSYQFHQAKKSTVPISRKGR", "length": 177, "header": "tr|F4J349-1|F4J349_ARATH Isoform 1 of Retrotransposon ORF-1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J349-1" }, "locus": { "chromosome": "3", "start_pos": 16158405, "end_pos": 16159835, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G44570.1", "url": "https://www.ensemblgenomes.org/id/AT3G44570.1" }, { "database": "Ensembl Peptide", "id": "AT3G44570.1", "url": "https://www.ensemblgenomes.org/id/AT3G44570.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J349", "url": "https://www.uniprot.org/uniprotkb/F4J349" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J349", "url": "https://www.uniprot.org/uniprotkb/F4J349" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G44570", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G44570", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J349-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 177, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J349-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J349" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J349", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J349" }, { "id": "PF03078", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03078" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Arabidopsis retrotransposon Orf1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 72, "end_pos": 117, "start_aa": "Lys", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"F4J368", "url": "https://alphafold.ebi.ac.uk/entry/F4J368", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G44713", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G44713", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "823599", "url": "https://www.ncbi.nlm.nih.gov/gene/823599", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G44713", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G44713", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_683680", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683680", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G44713", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G44713", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J368", "url": "https://www.uniprot.org/uniprotkb/F4J368", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J368-1", "url": "https://www.uniprot.org/uniprotkb/F4J368-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCLEGFPTFNGVTHELRSWISWLEDFFVWENFTDDEKMNLAQSLIEGEAEAWFYRRQKMILFRSWEHLRDCLVLRFGDRKDLELIRLLAKQDQFLKERRDESKIRRMKNTSVDPQEATPSMATIQETIPVEKLHNSLEITDKSLNQVDEISVEKGSKNDATLLSPQLLVSDSENLRNNELMAINSVVENLETVVIKTKIQKSSKMDVVNGDVGRIQQVSIMKSCSAHKMFDKMSPLKERLETKKKMKGLKSWMFKYKAEKRRIRKLHNQGWLRTWIKSLKYKFEKRIIEKRNDHSWLYNWSRRVTCRKIKSAKLQGHKQVLEQLGDTLGEVDKVALQSDIGANVSKSKKYCESITWIKDHRVEDINEQAVAYGEAFMISLTETDVLQSSWEHQMNSHIPTRLLSRRKQRKCFKSWRFKFKQVKEGNKQQHNLFRQMGTITILWWWLQNGSKVQWHILIVKRFDKPCVQGELIAYEGEIVGFYTTIGDRDIYFSVWHCWRKKKLHIINLQQLATVLHIYEKPKLGDFSQSYLLVAATLWSTKMQRGIESYHVWHRWKARYLQIFEYKFDAGSNPNCELATLVQNRGLKLSHVHELQRRGHHILQELSEACSSSMRYTQYLRDNVSLG", "length": 626, "header": "tr|F4J368-1|F4J368_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J368-1" }, "isoforms": [ { "isoform_ac": "F4J368-1", "url": "https://www.uniprot.org/uniprotkb/F4J368/entry#F4J368-1", "sequence": { "sequence": "MCLEGFPTFNGVTHELRSWISWLEDFFVWENFTDDEKMNLAQSLIEGEAEAWFYRRQKMILFRSWEHLRDCLVLRFGDRKDLELIRLLAKQDQFLKERRDESKIRRMKNTSVDPQEATPSMATIQETIPVEKLHNSLEITDKSLNQVDEISVEKGSKNDATLLSPQLLVSDSENLRNNELMAINSVVENLETVVIKTKIQKSSKMDVVNGDVGRIQQVSIMKSCSAHKMFDKMSPLKERLETKKKMKGLKSWMFKYKAEKRRIRKLHNQGWLRTWIKSLKYKFEKRIIEKRNDHSWLYNWSRRVTCRKIKSAKLQGHKQVLEQLGDTLGEVDKVALQSDIGANVSKSKKYCESITWIKDHRVEDINEQAVAYGEAFMISLTETDVLQSSWEHQMNSHIPTRLLSRRKQRKCFKSWRFKFKQVKEGNKQQHNLFRQMGTITILWWWLQNGSKVQWHILIVKRFDKPCVQGELIAYEGEIVGFYTTIGDRDIYFSVWHCWRKKKLHIINLQQLATVLHIYEKPKLGDFSQSYLLVAATLWSTKMQRGIESYHVWHRWKARYLQIFEYKFDAGSNPNCELATLVQNRGLKLSHVHELQRRGHHILQELSEACSSSMRYTQYLRDNVSLG", "length": 626, "header": "tr|F4J368-1|F4J368_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J368-1" }, "locus": { "chromosome": "3", "start_pos": 16260205, "end_pos": 16262484, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G44713.1", "url": "https://www.ensemblgenomes.org/id/AT3G44713.1" }, { "database": "Ensembl Peptide", "id": "AT3G44713.1", "url": "https://www.ensemblgenomes.org/id/AT3G44713.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 118, "start_aa": "Thr", "end_pos": 118, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr118", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J368", "url": "https://www.uniprot.org/uniprotkb/F4J368" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J368", "url": "https://www.uniprot.org/uniprotkb/F4J368" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G44713", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G44713", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J368", "url": "https://www.uniprot.org/uniprotkb/F4J368" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" }, { "start_pos": 622, "end_pos": 624, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J368-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 626, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J368-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J368" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 118 ], "snv_sites": [], "glycation_sites": [], 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"mass": { "chemical_mass": 15944.0, "monoisotopic_mass": 15944.0 }, "refseq": { "ac": "NP_680094", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680094" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4J379", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J379/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_680094", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680094" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J379", "url": "https://www.uniprot.org/uniprotkb/F4J379" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J379", "locus": {} } ], "crossref": [ { "id": "F4J379", "url": "https://alphafold.ebi.ac.uk/entry/F4J379", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G44755", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G44755", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "823606", "url": "https://www.ncbi.nlm.nih.gov/gene/823606", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G44755", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G44755", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_680094", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680094", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G44755", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G44755", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J379", "url": "https://www.uniprot.org/uniprotkb/F4J379", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J379-1", "url": "https://www.uniprot.org/uniprotkb/F4J379-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVLPQEVSLVGQFATVSCRALVYGACGRCYDRLLAAGPFARPEKPVVHRRVLQSSSLFLWGADSPDCLDGTASLRVTFVILACSLRLDALGILVVGGHRVSSFGGLLKVVASSAMGTASPCPFVFVPVASSPFCFKGANKSKWRYYLR", "length": 149, "header": "tr|F4J379-1|F4J379_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J379-1" }, "isoforms": [ { "isoform_ac": "F4J379-1", "url": "https://www.uniprot.org/uniprotkb/F4J379/entry#F4J379-1", "sequence": { "sequence": "MVVLPQEVSLVGQFATVSCRALVYGACGRCYDRLLAAGPFARPEKPVVHRRVLQSSSLFLWGADSPDCLDGTASLRVTFVILACSLRLDALGILVVGGHRVSSFGGLLKVVASSAMGTASPCPFVFVPVASSPFCFKGANKSKWRYYLR", "length": 149, "header": "tr|F4J379-1|F4J379_ARATH Isoform 1 of Uncharacterized 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J3F3", "url": "https://www.uniprot.org/uniprotkb/F4J3F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J3F3-1", "url": "https://www.uniprot.org/uniprotkb/F4J3F3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEELIRRSEPESLVSVTVARFMSTLLSARPKKLRESISRLTPDSQKGVSGSIDEALWFLEKCVIDAAERDEAMSEILVPIIEHTLRFKDSKHGNPAMILLNWLFQDEVLFQAVSRNLSNIILRNEDRFLALGWCLLIRRLVECEDTGDQGFWHGIREKHSMFVEIVSSCVPHLLMIVRNGSILQDGYEVPSRLSLSAADCLLSITGALAKRDNTLINRPKSPTITGSHQPVALTPNISEKKKRPTSLPEDSNIETNCILWNHMEDLTRLVQCLFAWNRKTRLLHAKGLSQVLKWLEELKEHHGGSQKEAGTEVSMGGALLLSSCWKHYSVLLHMEDQKFSKISKELLEQYLSGIKYYSESYPQGCSDTKNGGIETQKFFLNCLCLLLGRFEGKKFESILSEYGMKLVPILLHQLRSNNEEISEGVVAIFKAVFFKLQSQSGDSFSDTMCMDVVIPSLLHLLDERDGAAKAVSVLLADYCSKNAGNSCLSEILQRLASGTTVQRLNSLDVISEVILMSKDSFPSHIPWKEIADCLLKCLDDEETCICKQTSELLKSIEPSFVLPNLVNLIYAPNGKVQSSATETLLGVLKHHKEDFDVICMLLTSLSNIQALDTAESNGHSTEGLTFDSDRVLKLIPEWARSVQNWNSLIGPLLDKMFLEPSNAIMVRFLSCISESLADTSDLVLPHVLSHMKKQNKVDASFISRSDTKSSVDKTKSEKSLFDHLCPLLILRLLPQRVFDDIDSSTIYGKFLSGDSVNDYQDIKFEDCQCIATFILERAFSKFEFEEVRKLSAELCGRLHPQVLFPTVLLQLEKATEIQDSLKIKACLFSICTSLMVRGWESLSHRVTPKIRKVLENILLWPSVEDEISKVQHGCIDCLALMICAELQHLKSSKTSGGEKIRSTGKDTSGYSVLDYTIHCLIEDRSNCSSIPKLSTDILTCENPLPIPFRLCMANVIISACQKNPESSKKTFARKALPPLIHSLKVISVPEVRAACIQVLFSATYHLKSTLLPVSSDLLKLSLRFLEQGSEKEKLAGAKLMASLMASEDVILENISEGLLEARSVLSKASLSDPSRDVREVCAKLLACITPL", "length": 1092, "header": "tr|F4J3F3-1|F4J3F3_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J3F3-1" }, "isoforms": [ { "isoform_ac": "F4J3F2-1", "url": "https://www.uniprot.org/uniprotkb/F4J3F3/entry#F4J3F2-1", "sequence": { "sequence": "MEDLTRLVQCLFAWNRKTRLLHAKGLSQVLKWLEELKEHHGGSQKEAGTEVSMGGALLLSSCWKHYSVLLHMEDQKFSKISKELLEQYLSGIKYYSESYPQGCSDTKNGGIETQKFFLNCLCLLLGRFEGKKFESILSEYGMKLVPILLHQLRSNNEEISEGVVAIFKAVFFKLQSQSGDSFSDTMCMDVVIPSLLHLLDERDGAAKAVSVLLADYCSKNAGNSCLSEILQRLASGTTVQRLNSLDVISEVILMSKDSFPSHIPWKEIADCLLKCLDDEETCICKQTSELLKSIEPSFVLPNLVNLIYAPNGKVQSSATETLLGVLKHHKEDFDVICMLLTSLSNIQALDTAESNGHSTEGLTFDSDRVLKLIPEWARSVQNWNSLIGPLLDKMFLEPSNAIMVRFLSCISESLADTSDLVLPHVLSHMKKQNKVDASFISRSDTKSSVDKTKSEKSLFDHLCPLLILRLLPQRVFDDIDSSTIYGKFLSGDSVNDYQDIKFEDCQCIATFILERAFSKFEFEEVRKLSAELCGRLHPQVLFPTVLLQLEKATEIQDSLKIKACLFSICTSLMVRGWESLSHRVTPKIRKVLENILLWPSVEDEISKVQHGCIDCLALMICAELQHLKSSKTSGGEKIRSTGKDTSGYSVLDYTIHCLIEDRSNCSSIPKLSTDILTCENPLPIPFRLCMANVIISACQKNPESSKKTFARKALPPLIHSLKVISVPEVRAACIQVLFSATYHLKSTLLPVSSDLLKLSLRFLEQGSEKEKLAGAKLMASLMASEDVILENISEGLLEARSVLSKASLSDPSRDVREVCAKLLACITPL", "length": 829, "header": "tr|F4J3F2-1|F4J3F3_ARATH Computationally mapped isoform of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4J3F3-1" }, "locus": { "chromosome": "3", "start_pos": 21313821, "end_pos": 21320365, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G57570.2", "url": "https://www.ensemblgenomes.org/id/AT3G57570.2" }, { "database": "Ensembl Peptide", "id": "AT3G57570.2", "url": "https://www.ensemblgenomes.org/id/AT3G57570.2" } ] } }, { "isoform_ac": "F4J3F3-1", "url": "https://www.uniprot.org/uniprotkb/F4J3F3/entry#F4J3F3-1", "sequence": { "sequence": "MEEELIRRSEPESLVSVTVARFMSTLLSARPKKLRESISRLTPDSQKGVSGSIDEALWFLEKCVIDAAERDEAMSEILVPIIEHTLRFKDSKHGNPAMILLNWLFQDEVLFQAVSRNLSNIILRNEDRFLALGWCLLIRRLVECEDTGDQGFWHGIREKHSMFVEIVSSCVPHLLMIVRNGSILQDGYEVPSRLSLSAADCLLSITGALAKRDNTLINRPKSPTITGSHQPVALTPNISEKKKRPTSLPEDSNIETNCILWNHMEDLTRLVQCLFAWNRKTRLLHAKGLSQVLKWLEELKEHHGGSQKEAGTEVSMGGALLLSSCWKHYSVLLHMEDQKFSKISKELLEQYLSGIKYYSESYPQGCSDTKNGGIETQKFFLNCLCLLLGRFEGKKFESILSEYGMKLVPILLHQLRSNNEEISEGVVAIFKAVFFKLQSQSGDSFSDTMCMDVVIPSLLHLLDERDGAAKAVSVLLADYCSKNAGNSCLSEILQRLASGTTVQRLNSLDVISEVILMSKDSFPSHIPWKEIADCLLKCLDDEETCICKQTSELLKSIEPSFVLPNLVNLIYAPNGKVQSSATETLLGVLKHHKEDFDVICMLLTSLSNIQALDTAESNGHSTEGLTFDSDRVLKLIPEWARSVQNWNSLIGPLLDKMFLEPSNAIMVRFLSCISESLADTSDLVLPHVLSHMKKQNKVDASFISRSDTKSSVDKTKSEKSLFDHLCPLLILRLLPQRVFDDIDSSTIYGKFLSGDSVNDYQDIKFEDCQCIATFILERAFSKFEFEEVRKLSAELCGRLHPQVLFPTVLLQLEKATEIQDSLKIKACLFSICTSLMVRGWESLSHRVTPKIRKVLENILLWPSVEDEISKVQHGCIDCLALMICAELQHLKSSKTSGGEKIRSTGKDTSGYSVLDYTIHCLIEDRSNCSSIPKLSTDILTCENPLPIPFRLCMANVIISACQKNPESSKKTFARKALPPLIHSLKVISVPEVRAACIQVLFSATYHLKSTLLPVSSDLLKLSLRFLEQGSEKEKLAGAKLMASLMASEDVILENISEGLLEARSVLSKASLSDPSRDVREVCAKLLACITPL", "length": 1092, "header": "tr|F4J3F3-1|F4J3F3_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J3F3-1" }, "locus": { "chromosome": "3", "start_pos": 21312498, "end_pos": 21320481, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G57570.1", "url": "https://www.ensemblgenomes.org/id/AT3G57570.1" }, { "database": "Ensembl Peptide", "id": "AT3G57570.1", "url": "https://www.ensemblgenomes.org/id/AT3G57570.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J3F2", "url": "https://www.uniprot.org/uniprotkb/F4J3F2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J3F2", "url": "https://www.uniprot.org/uniprotkb/F4J3F2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G57570", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G57570", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4J3F3", "url": "https://www.uniprot.org/uniprotkb/F4J3F3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1054, "end_pos": 1056, "annotation": "n_glycosylation_sequon" }, { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 927, "end_pos": 929, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J3F3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1092, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J3F3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J3F3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1054, "end_pos": 1056 }, { "start_pos": 117, "end_pos": 119 }, { "start_pos": 180, "end_pos": 182 }, { "start_pos": 237, "end_pos": 239 }, { "start_pos": 927, "end_pos": 929 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J3I0-1", "uniprot_ac": "F4J3I0", "uniprot_id": "F4J3I0_ARATH", "mass": { "chemical_mass": 54099.0, "monoisotopic_mass": 54099.0 }, "refseq": { "ac": "NP_001327729", "name": "Pectin lyase-like superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327729" }, "gene_names": [], "protein_names": [ { "name": "Pectin lyase-like superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_001327729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327729" }, { "id": "F4J3I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J3I0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J3I0", "url": "https://www.uniprot.org/uniprotkb/F4J3I0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J3I0", "locus": {} } ], "crossref": [ { "id": "824949", "url": "https://www.ncbi.nlm.nih.gov/gene/824949", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011050", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011050", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051801", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051801", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G57790", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G57790", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PCHWGKA", "url": "https://omabrowser.org/oma/group/PCHWGKA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31339", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31339", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31339:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31339:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00295", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00295", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001327729", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327729", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G57790", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G57790", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J3I0", "url": "https://www.uniprot.org/uniprotkb/F4J3I0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J3I0-1", "url": "https://www.uniprot.org/uniprotkb/F4J3I0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMGSILLLLLFFSLVQSRSDTSYSKIQLPGDSLTLSVTDFGATGDGINYDTSAIQSTIDACNRHYTSFSSICRVVFPSGNYLTAKLHLRSGVILDVTENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKNVMVSWNQTGACLGDECRPRLVGFVDSINVEIWNITLREPAYWCLHIVRCENTSVHDVSILGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCWIRTKSSAIKLGSASWFDFKGLVFDNITIFESHRGLGMQIRDGGNVSDVTFSNINISTRYYDPSWWGRAEPIYITTCPRDSSAKEGSISNLLFVNITIDSENGVFLSGSPNGLLSDIKFKNMNLTFRRWSNYSAGLVDYRPGCQGLVNHRATSGIIMEHVNGFRVENVDLKWSDDDDVNAAWNVPLEFRPSTVNNVSFVGFTSGLYTKLFESDYVMVGENNIAFA", "length": 490, "header": "tr|F4J3I0-1|F4J3I0_ARATH Isoform 1 of Pectin lyase-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J3I0-1" }, "isoforms": [ { "isoform_ac": "F4J3I0-1", "url": "https://www.uniprot.org/uniprotkb/F4J3I0/entry#F4J3I0-1", "sequence": { "sequence": "MMGSILLLLLFFSLVQSRSDTSYSKIQLPGDSLTLSVTDFGATGDGINYDTSAIQSTIDACNRHYTSFSSICRVVFPSGNYLTAKLHLRSGVILDVTENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKNVMVSWNQTGACLGDECRPRLVGFVDSINVEIWNITLREPAYWCLHIVRCENTSVHDVSILGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCWIRTKSSAIKLGSASWFDFKGLVFDNITIFESHRGLGMQIRDGGNVSDVTFSNINISTRYYDPSWWGRAEPIYITTCPRDSSAKEGSISNLLFVNITIDSENGVFLSGSPNGLLSDIKFKNMNLTFRRWSNYSAGLVDYRPGCQGLVNHRATSGIIMEHVNGFRVENVDLKWSDDDDVNAAWNVPLEFRPSTVNNVSFVGFTSGLYTKLFESDYVMVGENNIAFA", "length": 490, "header": "tr|F4J3I0-1|F4J3I0_ARATH Isoform 1 of Pectin lyase-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J3I0-1" }, "locus": { "chromosome": "3", "start_pos": 21405283, "end_pos": 21407624, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G57790.1", "url": "https://www.ensemblgenomes.org/id/AT3G57790.1" }, { "database": "Ensembl Peptide", "id": "AT3G57790.1", "url": "https://www.ensemblgenomes.org/id/AT3G57790.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J3I0", "url": "https://www.uniprot.org/uniprotkb/F4J3I0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J3I0", "url": "https://www.uniprot.org/uniprotkb/F4J3I0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G57790", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G57790", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4J3I0", "url": "https://www.uniprot.org/uniprotkb/F4J3I0" } ], "pmid": "" }, { "name": "plant-type vacuole", "id": "GO:0000325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000325", "evidence": [ { "database": "UniProtKB", "id": "F4J3I0", "url": "https://www.uniprot.org/uniprotkb/F4J3I0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "F4J3I0", "url": "https://www.uniprot.org/uniprotkb/F4J3I0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "lyase activity", "id": "GO:0016829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016829", "evidence": [ { "database": "UniProtKB", "id": "F4J3I0", "url": "https://www.uniprot.org/uniprotkb/F4J3I0" } ], "pmid": "" }, { "name": "polygalacturonase activity", "id": "GO:0004650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004650", "evidence": [ { "database": "UniProtKB", "id": "F4J3I0", "url": "https://www.uniprot.org/uniprotkb/F4J3I0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 310, "end_pos": 312, "annotation": "n_glycosylation_sequon" 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JKZ3-1", "uniprot_ac": "F4JKZ3", "uniprot_id": "F4JKZ3_ARATH", "mass": { "chemical_mass": 61997.0, "monoisotopic_mass": 61997.0 }, "refseq": { "ac": "NP_974557", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974557" }, "gene_names": [], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_974557", "database": "RefSeq", "url": 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"url": "https://www.ncbi.nlm.nih.gov/gene/2745710", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G16015", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16015", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WCQICEE", "url": "https://omabrowser.org/oma/group/WCQICEE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_974557", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974557", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G16015", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G16015", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B3B7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3B7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B3B7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3B7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKZ3", "url": "https://www.uniprot.org/uniprotkb/F4JKZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKZ3-1", "url": "https://www.uniprot.org/uniprotkb/F4JKZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIIEGPKAHEHPLFLLPKMTMFTCHLCGLQDDRFPYACNLCNLSFHKDCAESTPEMKYSCHPKHILKRLTRVPRYTDGKCCLCENKLHYIFYHCSICNFSVDINCAKNPLPSTIVHLKAHEHLLTLMPQRNFVCDACGMDDDPNPYVCLPCNFMIHQNCIDKPSIIKIYRHDHRLYYNHCLDAGDWKCGVCNKEINWTCGAYSCSKCPDFAIHPRCVKRFGIWDGIELEGIPENNVEVKSYEVIEEGEIRHFSHEKHNLKLQEESDANNECMLCKACNYPIYSNSFYSCMECDDFILHKKCADLPKKKIDPFYNMLTTLITNDIRISICNACQNVSQGFTYVSDDHKIILDVRCGSISEPFVHESHPLHSLYISRSTEEKFCIACGDKATMVLSCEECDFILDIKCSNLPKMVKHKNDKDHLLSLCYGEKTSEQYWCEICEEALNAKKWFYSCDDCDITFHIKCTLGDFVGMYQEAKDESFQTYMILNNHINRPVCCCCESRCQFSSILRFYGKLICSLQCLQKKFQELHDDIS", "length": 535, "header": "tr|F4JKZ3-1|F4JKZ3_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JKZ3-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B3B7-1", "url": "https://www.uniprot.org/uniprotkb/F4JKZ3/entry#A0A1P8B3B7-1", "sequence": { "sequence": "MEIIEGPKAHEHPLFLLPKMTMFTCHLCGLQDDRFPYACNLCNLSFHKDCAESTPEMKYSCHPKHILKRLTRVPSVDINCAKNPLPSTIVHLKAHEHLLTLMPQRNFVCDACGMDDDPNPYVCLPCNFMIHQNCIDKPSIIKIYRHDHRLYYNHCLDAGDWKCGVCNKEINWTCGAYSCSKCPDFAIHPRCVKRFGIWDGIELEGIPENNVEVKSYEVIEEGEIRHFSHEKHNLKLQEESDANNECMLCKACNYPIYSNSFYSCMECDDFILHKKCADLPKKKIDPFYNMLTTLITNDIRISICNACQNVSQGFTYVSDDHKIILDVRCGSISEPFVHESHPLHSLYISRSTEEKFCIACGDKATMVLSCEECDFILDIKCSNLPKMVKHKNDKDHLLSLCYGEKTSEQYWCEICEEALNAKKWFYSCDDCDITFHIKCTLGDFVGMYQEAKDESFQTYMILNNHINRPVCCCCESRCQFSSILRFYGKLICSLQCLQKKFQELHDDIS", "length": 509, "header": "tr|A0A1P8B3B7-1|F4JKZ3_ARATH Computationally mapped isoform of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JKZ3-1" }, "locus": { "chromosome": "4", "start_pos": 9073202, "end_pos": 9074999, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16015.2", "url": "https://www.ensemblgenomes.org/id/AT4G16015.2" }, { "database": "Ensembl Peptide", "id": "AT4G16015.2", "url": "https://www.ensemblgenomes.org/id/AT4G16015.2" } ] } }, { "isoform_ac": "F4JKZ3-1", "url": "https://www.uniprot.org/uniprotkb/F4JKZ3/entry#F4JKZ3-1", "sequence": { "sequence": "MEIIEGPKAHEHPLFLLPKMTMFTCHLCGLQDDRFPYACNLCNLSFHKDCAESTPEMKYSCHPKHILKRLTRVPRYTDGKCCLCENKLHYIFYHCSICNFSVDINCAKNPLPSTIVHLKAHEHLLTLMPQRNFVCDACGMDDDPNPYVCLPCNFMIHQNCIDKPSIIKIYRHDHRLYYNHCLDAGDWKCGVCNKEINWTCGAYSCSKCPDFAIHPRCVKRFGIWDGIELEGIPENNVEVKSYEVIEEGEIRHFSHEKHNLKLQEESDANNECMLCKACNYPIYSNSFYSCMECDDFILHKKCADLPKKKIDPFYNMLTTLITNDIRISICNACQNVSQGFTYVSDDHKIILDVRCGSISEPFVHESHPLHSLYISRSTEEKFCIACGDKATMVLSCEECDFILDIKCSNLPKMVKHKNDKDHLLSLCYGEKTSEQYWCEICEEALNAKKWFYSCDDCDITFHIKCTLGDFVGMYQEAKDESFQTYMILNNHINRPVCCCCESRCQFSSILRFYGKLICSLQCLQKKFQELHDDIS", "length": 535, "header": "tr|F4JKZ3-1|F4JKZ3_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JKZ3-1" }, "locus": { "chromosome": "4", "start_pos": 9072908, "end_pos": 9074809, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16015.1", "url": "https://www.ensemblgenomes.org/id/AT4G16015.1" }, { "database": "Ensembl Peptide", "id": "AT4G16015.1", "url": "https://www.ensemblgenomes.org/id/AT4G16015.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B3B7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3B7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B3B7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3B7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G16015", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16015", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JGW1-1", "uniprot_ac": "F4JGW1", "uniprot_id": "F4JGW1_ARATH", "mass": { "chemical_mass": 29429.0, "monoisotopic_mass": 29429.0 }, "refseq": { "ac": "NP_567269", "name": "Rix1 complex component", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567269" }, "gene_names": [ { "name": "T19J18.1", "type": "synonym", "evidence": [ { "id": "NP_567269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567269" }, { "id": "F4JGW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JGW1" } ] }, { "name": "T19J18_1", "type": "synonym", "evidence": [ { "id": "NP_567269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567269" }, { "id": "F4JGW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JGW1" } ] } ], "protein_names": [ { "name": "Rix1 complex component", "type": "synonym", "evidence": [ { "id": "NP_567269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567269" }, { "id": "F4JGW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JGW1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JGW1", "url": "https://www.uniprot.org/uniprotkb/F4JGW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JGW1", "locus": {} } ], "crossref": [ { "id": "F4JGW1", "url": "https://alphafold.ebi.ac.uk/entry/F4JGW1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G04680", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G04680", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "825801", "url": "https://www.ncbi.nlm.nih.gov/gene/825801", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G04680", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G04680", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR16056", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16056", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16056:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16056:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_567269", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567269", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G04680", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G04680", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B3E5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B3E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3E5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGW1", "url": "https://www.uniprot.org/uniprotkb/F4JGW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGW1-1", "url": "https://www.uniprot.org/uniprotkb/F4JGW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISVFASFIKPSSLCLWLKVETAAAMILAEQNVAAEKSGLATSKKGLTLKDLLPQTSHCNAKLRKDALNGLKDLLKNHPAELQSHKYAIIQKLRERIMDDDSLVRDALYQLFESVILPACKNDNQSPMVSLLMPYISCAMAHSSVECYISQLLPLMFLATTFPDISMCYLLQILENYKDNKHKLTYFLLIFTRNRNFLFPSIYRFCFFLLNLRAHTMAKGFLDTGQSPSHNLGQGSTHTTLDQNVKLVKIITESKTSSVSQ", "length": 261, "header": "tr|F4JGW1-1|F4JGW1_ARATH Isoform 1 of Rix1 complex component OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGW1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B3E5-1", "url": "https://www.uniprot.org/uniprotkb/F4JGW1/entry#A0A1P8B3E5-1", "sequence": { "sequence": "MISVFASFIKPSSLCLWLKVETAAAMILAEQNVAAEKSGLATSKKGLTLKDLLPQTSHCNAKLRKDALNGLKDLLKNHPAELQSHKYAIIQKLRERIMDDDSLVRDALYQLFESVILPACKNDNQSPMVSLLMPYISCAMAHSSVGVRWMASKFEKILENYKDNKHKFCFFLLNLRAHTMAKGFLDTGQSPSHNLGQGSTHTTLDQNVKLVKIITESKTSSVSQ", "length": 224, "header": "tr|A0A1P8B3E5-1|F4JGW1_ARATH Computationally mapped isoform of Rix1 complex component OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGW1-1" }, "locus": { "chromosome": "4", "start_pos": 2372266, "end_pos": 2373327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G04680.2", "url": "https://www.ensemblgenomes.org/id/AT4G04680.2" }, { "database": "Ensembl Peptide", "id": "AT4G04680.2", "url": "https://www.ensemblgenomes.org/id/AT4G04680.2" } ] } }, { "isoform_ac": "F4JGW1-1", "url": "https://www.uniprot.org/uniprotkb/F4JGW1/entry#F4JGW1-1", "sequence": { "sequence": "MISVFASFIKPSSLCLWLKVETAAAMILAEQNVAAEKSGLATSKKGLTLKDLLPQTSHCNAKLRKDALNGLKDLLKNHPAELQSHKYAIIQKLRERIMDDDSLVRDALYQLFESVILPACKNDNQSPMVSLLMPYISCAMAHSSVECYISQLLPLMFLATTFPDISMCYLLQILENYKDNKHKLTYFLLIFTRNRNFLFPSIYRFCFFLLNLRAHTMAKGFLDTGQSPSHNLGQGSTHTTLDQNVKLVKIITESKTSSVSQ", "length": 261, "header": "tr|F4JGW1-1|F4JGW1_ARATH Isoform 1 of Rix1 complex component OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGW1-1" }, "locus": { "chromosome": "4", "start_pos": 2372266, "end_pos": 2373406, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G04680.1", "url": "https://www.ensemblgenomes.org/id/AT4G04680.1" }, { "database": "Ensembl Peptide", "id": "AT4G04680.1", "url": "https://www.ensemblgenomes.org/id/AT4G04680.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B3E5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3E5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B3E5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3E5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G04680", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G04680", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JGW1", "url": "https://www.uniprot.org/uniprotkb/F4JGW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JGW1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 261, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JGW1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JGW1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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3702, "evidence": [ { "database": "UniProtKB", "id": "F4JL00", "url": "https://www.uniprot.org/uniprotkb/F4JL00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL4075C", "url": "https://www.uniprot.org/uniprotkb/F4JL00", "locus": {} } ], "crossref": [ { "id": "F4JL00", "url": "https://alphafold.ebi.ac.uk/entry/F4JL00", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G16070", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G16070", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00519", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00519", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "827292", "url": "https://www.ncbi.nlm.nih.gov/gene/827292", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002921", "url": 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"F4JL01", "url": "https://www.orthodb.org/?gene=F4JL01", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46023:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46023:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01764", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01764", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03893", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03893", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190739", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190739", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G16070", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G16070", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B3W4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3W4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B3W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3W4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JL00", "url": "https://www.uniprot.org/uniprotkb/F4JL00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JL00-1", "url": "https://www.uniprot.org/uniprotkb/F4JL00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JL01", "url": "https://www.uniprot.org/uniprotkb/F4JL01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JL01-1", "url": "https://www.uniprot.org/uniprotkb/F4JL01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGVMVTATGAVVILYLLSRRIVWARNGEDDSGGELGKSGRSGRRRIVRRPAQAPATWLETISTLSETLRFTYSETLGKWPIADLAFGINYLMRRQGNFPTASVYAGSNCIELKGPEIIMDLTELLRFLTLCMLFSKKPFAVFLESAGYTHEDVLLQKPKAGIMQPAFTIIRDTNSKCILLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGLSNLVLGYAHCGMVAAARWIAKLSVPCLLKALDENPSFKVQIVGHSLGGGTASLLTYILREQKEFASATCFTFAPAESGKHFITTIINGSDLVPTFSASSVDDLRSEVTSSSWSNDLRDQVEHTRVLSVVYRSATAIGSRLPSIASAKAKVAGAGAILRPVSSGTQVMLKRAQDVAQAVVQTRSTLSSWSCIGPRRRAISSQLNSKVTDMPEASAIMAERRSTEALLAETVAIDRKGHKRTEHSSSSSSESDRDEPDEEEEEEPLISIDQVIAETSSIEEDVTEGELWDELDRELTRQENERDSEAMEEEAAAAKEITEEETVITGGGDSSTGQNQSPVSASSMDLIENQRFYPPGKIMHIVSVTETESETERDEVVVVGTTTVERVRIYETPRELYRKIRLSRTMINDHYMPMYKKMMELLITELECDSHSS", "length": 646, "header": "tr|F4JL00-1|F4JL00_ARATH Isoform 1 of Lipase class 3 family protein OS=Arabidopsis thaliana OX=3702 GN=DL4075C PE=1 SV=1 CANONICAL=F4JL00-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B3W4-1", "url": "https://www.uniprot.org/uniprotkb/F4JL00/entry#A0A1P8B3W4-1", "sequence": { "sequence": "MAAGVMVTATGAVVILYLLSRRIVWARNGEDDSGGELGKSGRSGRRRIVRRPAQAPATWLETISTLSETLRFTYSETLGKWPIADLAFGINYLMRRQGNFPTASVYAGSNCIELKGPEIIMDLTELLRFLTLCMLFSKKPFAVFLESAGYTHEDVLLQKPKAGIMQPAFTIIRDTNSKCILLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGLSNLVLGYAHCGMVAAARWIAKLSVPCLLKALDENPSFKVQIVGHSLGGGTASLLTYILREQKEFASATCFTFAPAACMTWDLAESGKHFITTIINGSDLVPTFSASSVDDLRSEILVWSIYWQVTSSSWSNDLRDQVEHTRVLSVVYRSATAIGSRLPSIASAKAKVAGAGAILRPVSSGTQVMLKRAQDVAQAVVQTRSTLSSWSCIGPRRRAISSQLNSKVTDMPEASAIMAERRSTEALLAETVAIDRKGHKRTEHSSSSSSESDRDEPDEEEEEEPLISIDQVIAETSSIEEDVTEGELWDELDRELTRQENERDSEAMEEEAAAAKEITEEETVITGGGDSSTGQNQSPVSASSMDLIENQRFYPPGKIMHIVSVTETESETERDEVVVVGTTTVERVRIYETPRELYRKIRLSRTMINDHYMPMYKKMMELLITELECDSHSS", "length": 663, "header": "tr|A0A1P8B3W4-1|F4JL00_ARATH Computationally mapped isoform of Lipase class 3 family protein OS=Arabidopsis thaliana OX=3702 GN=DL4075C PE=1 SV=1 CANONICAL=F4JL00-1" }, "locus": { "chromosome": "4", "start_pos": 9096727, "end_pos": 9100841, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16070.3", "url": "https://www.ensemblgenomes.org/id/AT4G16070.3" }, { "database": "Ensembl Peptide", "id": "AT4G16070.3", "url": "https://www.ensemblgenomes.org/id/AT4G16070.3" } ] } }, { "isoform_ac": "F4JL00-1", "url": "https://www.uniprot.org/uniprotkb/F4JL00/entry#F4JL00-1", "sequence": { "sequence": "MAAGVMVTATGAVVILYLLSRRIVWARNGEDDSGGELGKSGRSGRRRIVRRPAQAPATWLETISTLSETLRFTYSETLGKWPIADLAFGINYLMRRQGNFPTASVYAGSNCIELKGPEIIMDLTELLRFLTLCMLFSKKPFAVFLESAGYTHEDVLLQKPKAGIMQPAFTIIRDTNSKCILLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGLSNLVLGYAHCGMVAAARWIAKLSVPCLLKALDENPSFKVQIVGHSLGGGTASLLTYILREQKEFASATCFTFAPAESGKHFITTIINGSDLVPTFSASSVDDLRSEVTSSSWSNDLRDQVEHTRVLSVVYRSATAIGSRLPSIASAKAKVAGAGAILRPVSSGTQVMLKRAQDVAQAVVQTRSTLSSWSCIGPRRRAISSQLNSKVTDMPEASAIMAERRSTEALLAETVAIDRKGHKRTEHSSSSSSESDRDEPDEEEEEEPLISIDQVIAETSSIEEDVTEGELWDELDRELTRQENERDSEAMEEEAAAAKEITEEETVITGGGDSSTGQNQSPVSASSMDLIENQRFYPPGKIMHIVSVTETESETERDEVVVVGTTTVERVRIYETPRELYRKIRLSRTMINDHYMPMYKKMMELLITELECDSHSS", "length": 646, "header": "tr|F4JL00-1|F4JL00_ARATH Isoform 1 of Lipase class 3 family protein OS=Arabidopsis thaliana OX=3702 GN=DL4075C PE=1 SV=1 CANONICAL=F4JL00-1" }, "locus": { "chromosome": "4", "start_pos": 9096689, "end_pos": 9100983, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16070.2", "url": "https://www.ensemblgenomes.org/id/AT4G16070.2" }, { "database": "Ensembl Peptide", "id": "AT4G16070.2", "url": "https://www.ensemblgenomes.org/id/AT4G16070.2" } ] } }, { "isoform_ac": "F4JL01-1", "url": "https://www.uniprot.org/uniprotkb/F4JL00/entry#F4JL01-1", "sequence": { "sequence": "MAAGVMVTATGAVVILYLLSRRIVWARNGEDDSGGELGKSGRSGRRRIVRRPAQAPATWLETISTLSETLRFTYSETLGKWPIADLAFGINYLMRRQGNFPTASVYAGSNCIELKGPEIIMDLTELLRFLTLCMLFSKKPFAVFLESAGYTHEDVLLQKPKAGIMQPAFTIIRDTNSKCILLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGLSNLVLGYAHCGMVAAARWIAKLSVPCLLKALDENPSFKVQIVGHSLGGGTASLLTYILREQKEFASATCFTFAPAACMTWDLAESGKHFITTIINGSDLVPTFSASSVDDLRSEVTSSSWSNDLRDQVEHTRVLSVVYRSATAIGSRLPSIASAKAKVAGAGAILRPVSSGTQVMLKRAQDVAQAVVQTRSTLSSWSCIGPRRRAISSQLNSKVTDMPEASAIMAERRSTEALLAETVAIDRKGHKRTEHSSSSSSESDRDEPDEEEEEEPLISIDQVIAETSSIEEDVTEGELWDELDRELTRQENERDSEAMEEEAAAAKEITEEETVITGGGDSSTGQNQSPVSASSMDLIENQRFYPPGKIMHIVSVTETESETERDEVVVVGTTTVERVRIYETPRELYRKIRLSRTMINDHYMPMYKKMMELLITELECDSHSS", "length": 654, "header": "tr|F4JL01-1|F4JL01_ARATH Computationally mapped isoform of Lipase class 3 family protein OS=Arabidopsis thaliana OX=3702 GN=DL4075C PE=1 SV=1 CANONICAL=F4JL00-1" }, "locus": { "chromosome": "4", "start_pos": 9096534, "end_pos": 9100854, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": 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Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, 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Aldolase like OS=Arabidopsis thaliana OX=3702 GN=ALL1 PE=4 SV=1 CANONICAL=F4JQ41-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B3Y8-1", "url": "https://www.uniprot.org/uniprotkb/F4JQ41/entry#A0A1P8B3Y8-1", "sequence": { "sequence": "MFPMVETGRSASEAVSFCLYRPDGVRGCAYSVVRDSSFGFNEGYLGNYADKLFIMCQIESEEGMKNVKEIIAVDGMDCVMMGPRDLSASLGLLNDPGNPKVKSVMRVAETAVLASDPANGGAYLAGMATAQDKTGDLKARGYHVVLGSTDVSLYKKAVVDEVNAFKA", "length": 167, "header": "tr|A0A1P8B3Y8-1|F4JQ41_ARATH Computationally mapped isoform of Aldolase like OS=Arabidopsis thaliana OX=3702 GN=ALL1 PE=4 SV=1 CANONICAL=F4JQ41-1" }, "locus": { "chromosome": "4", "start_pos": 12511187, "end_pos": 12512520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24080.2", "url": "https://www.ensemblgenomes.org/id/AT4G24080.2" }, { "database": "Ensembl Peptide", "id": "AT4G24080.2", "url": "https://www.ensemblgenomes.org/id/AT4G24080.2" } ] } }, { "isoform_ac": "F4JQ41-1", "url": "https://www.uniprot.org/uniprotkb/F4JQ41/entry#F4JQ41-1", "sequence": { "sequence": "MATKKSLKSRLQDGEKLLGHFLLSFSPELAEIAARAGFDFIVVYLEHGAGGIPKKALDLGPDGIMFPMVETGRSASEAVSFCLYRPDGVRGCAYSVVRDSSFGFNEGYLGNYADKLFIMCQIESEEGMKNVKEIIAVDGMDCVMMGPRDLSASLGLLNDPGNPKVKSVMRVAETAVLASDPANGGAYLAGMATAQDKTGDLKARGYHVVLGSTDVSLYKKAVVDEVNAFKA", "length": 231, "header": "tr|F4JQ41-1|F4JQ41_ARATH Isoform 1 of Aldolase like OS=Arabidopsis thaliana OX=3702 GN=ALL1 PE=4 SV=1 CANONICAL=F4JQ41-1" }, "locus": { "chromosome": "4", "start_pos": 12511358, "end_pos": 12512392, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24080.1", "url": "https://www.ensemblgenomes.org/id/AT4G24080.1" }, { "database": "Ensembl Peptide", "id": "AT4G24080.1", "url": "https://www.ensemblgenomes.org/id/AT4G24080.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B3Y8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3Y8" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B3Y8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B3Y8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G24080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G24080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F4JQ41", "url": "https://www.uniprot.org/uniprotkb/F4JQ41" } ], "pmid": "" }, { "name": "lyase activity", "id": "GO:0016829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016829", "evidence": [ { "database": "UniProtKB", "id": "F4JQ41", "url": "https://www.uniprot.org/uniprotkb/F4JQ41" } ], "pmid": "" }, { "name": "aldehyde-lyase activity", "id": "GO:0016832", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016832", "evidence": [ { "database": "UniProtKB", "id": "F4JQ41", "url": "https://www.uniprot.org/uniprotkb/F4JQ41" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JQ41", "url": "https://www.uniprot.org/uniprotkb/F4JQ41" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytokinin-activated signaling pathway", "id": "GO:0009736", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009736", "evidence": [ { "database": "UniProtKB", "id": "F4JQ41", "url": "https://www.uniprot.org/uniprotkb/F4JQ41" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JQ41-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 231, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JQ41-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JQ41" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JQ41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQ41" }, { "id": "PF03328", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03328" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HpcH/HpaI aldolase/citrate lyase", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 218, "start_aa": "Ala", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JMA6-1", "uniprot_ac": "F4JMA6", "uniprot_id": "F4JMA6_ARATH", "mass": { "chemical_mass": 96026.0, "monoisotopic_mass": 96026.0 }, "refseq": {}, "gene_names": [ { "name": "F23E12.200", "type": "synonym", "evidence": [ { "id": "F4JMA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JMA6" } ] }, { "name": "F23E12_200", "type": "synonym", "evidence": [ { "id": "F4JMA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JMA6" } ] } ], "protein_names": [ { "name": "DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632)", "type": "synonym", "evidence": [ { "id": "F4JMA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JMA6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JMA6", "url": "https://www.uniprot.org/uniprotkb/F4JMA6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JMA6", "locus": {} } ], "crossref": [ { "id": "AT4G35240", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G35240", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829677", "url": "https://www.ncbi.nlm.nih.gov/gene/829677", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G35240", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G35240", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FGPPYQV", "url": "https://omabrowser.org/oma/group/FGPPYQV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21450", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21450", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21450:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21450:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G35240", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G35240", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B479", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B479", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B479-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B479-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JMA6", "url": "https://www.uniprot.org/uniprotkb/F4JMA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JMA6-1", "url": "https://www.uniprot.org/uniprotkb/F4JMA6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCTSSKLDDLPAVALCRERCAFLEAAIHQRYALAESHVAYTHSLREIGHSLHLFINHHHRFVASGGANVGDSPRLNLPPQRKGDLDDEATNSPKKQKLASSHHNHNHAHSGSGSDSGHLEFDSDSDEDEEDDDDLDLDSLHHHSPPHHHLGNFPIPESAPMGGYMEQQPGYINPYPNPDMMGHPYSGGGSYMHMNYMKNKSMPPSVVYEQRPTSPQRVYIGESSSSYPYPPQNSYFGYSNPVPGPGPGYYGSSSASTTAAATKPPPPPPSPPRSNGWDFLNPFDTYYPPYTPSRDSRELREEEGIPDLEDDDSHYEVVKEVYGKPKFAAGGGHQPNPAAVHMMREESPSPPLDKSGASTSGGGDVGDASAYQSRPSVSVEKEGMEYEVHVVEKKVVEDEERRSNATATRGGGGGGGPRAVPEVAKEIENQFVKAAESGSEIAKLLEVGKHPYGRKHAASKMLHGVTPSLPSTSGGTSSSAAAAVVPPTYADIEEELASRSRNLSSTLHKLHLWEKKLYHEVKAEEKLRLAHEKKLRKLKRLDQRGAEAIKVDKTRKLVRDMSTKIRIAIQVVDKISVTINKIRDEDLWPQLNALIQGLTRMWKTMLECHQSQCQAIREAQGLGPIRASKKLGDEHLEATSLLGHELINWILGFSSWVSAQKGYVKELNKWLMKCLLYEPEETPDGIVPFSPGRIGAPPIFVICNQWSQALDRISEKEVIEAMRSFTTSVLQLWEQDRLDTMMTGHGDSEKKVRNMDREEQRIQREIQALEKKMILVAPGDGNSLSISGNVVYQSDTSSDSLQGSLQRIFEAMERFTAESMRAYEDLLERTNEETAPRELEEEEEEILGFARLRLGQKAPFRMMI", "length": 865, "header": "tr|F4JMA6-1|F4JMA6_ARATH Isoform 1 of DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JMA6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B479-1", "url": "https://www.uniprot.org/uniprotkb/F4JMA6/entry#A0A1P8B479-1", "sequence": { "sequence": "MGCTSSKLDDLPAVALCRERCAFLEAAIHQRYALAESHVAYTHSLREIGHSLHLFINHHHRFVASGGANVGDSPRLNLPPQRKGDLDDEATNSPKKQKLASSHHNHNHAHSGSGSDSGHLEFDSDSDEDEEDDDDLDLDSLHHHSPPHHHLGNFPIPESAPMGGYMEQQPGYINPYPNPDMMGHPYSGGGSYMHMNYMKNKSMPPSVVYEQRPTSPQRVYIGESSSSYPYPPQNSYFGYSNPVPGPGPGYYGSSSASTTAAATKPPPPPPSPPRSNGWDFLNPFDTYYPPYTPSRDSRELREEEGIPDLEDDDSHYEVVKEVYGKPKFAAGGGHQPNPAAVHMMREESPSPPLDKSGASTSGGGDVGDASAYQSRPSVSVEKEGMEYEVHVVEKKVVEDEERRSNATATRGGGGGGGPRAVPEVAKEIENQFVKAAESGSEIAKLLEVGKHPYGRKHAASKMLHGVTPSLPSTSGGTSSSAAAAVVPPTYADIEEELASRSRNLSSTLHKLHLWEKKLYHEVKAEEKLRLAHEKKLRKLKRLDQRGAEAIKVDKTRKLVRDMSTKIRIAIQVVDKISVTINKIRDEDLWPQLNALIQGLTRMWKTMLECHQSQCQAIREAQGLGPIRASKKLGDEHLEATSLLGHELINWILGFSSWVSAQKGYVKELNKWLMKCLLYEPEETPDGIVPFSPGRIGAPPIFVICNQWSQALDRISEKEVIEAMRSFTTSVLQLWEQDRLDTMMTGHGDSEKKVRNMDREEQRIQREIQALEKKMILVAPGDGNSLSISGNVVYQSDTSSDSLQGSLQRIFEAMERFTAESMRAYEDLLERTNEETAPRELEEEEEE", "length": 846, "header": "tr|A0A1P8B479-1|F4JMA6_ARATH Computationally mapped isoform of DNA-directed RNA polymerase subunit beta, putative (DUF630 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"tr|A0A1P8B4E9-1|F4JLP8_ARATH Computationally mapped isoform of Leucine-rich repeat (LRR) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JLP8-1" }, "locus": { "chromosome": "4", "start_pos": 9159891, "end_pos": 9161614, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16162.5", "url": "https://www.ensemblgenomes.org/id/AT4G16162.5" }, { "database": "Ensembl Peptide", "id": "AT4G16162.5", "url": "https://www.ensemblgenomes.org/id/AT4G16162.5" } ] } }, { "isoform_ac": "F4JLP8-1", "url": "https://www.uniprot.org/uniprotkb/F4JLP8/entry#F4JLP8-1", "sequence": { "sequence": "MLINLLNISPRVSFDISPRVSSQRACRASISARDKSRHLSGSIPSEWGLLPLVNITLLGNRLTGPIPKEIGNIITLERLVLENNQLSGTLPPELGRLSNLKRLVLYASGLSGPIPLSIAHLTKLKDLMISDMTGPEFFFPPLQSMTQMRQLVLRNINLKGELPSYLGTNTTNLTLL", "length": 176, "header": "tr|F4JLP8-1|F4JLP8_ARATH Isoform 1 of Leucine-rich repeat (LRR) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JLP8-1" }, "locus": { "chromosome": "4", "start_pos": 9159105, "end_pos": 9161614, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16162.2", "url": "https://www.ensemblgenomes.org/id/AT4G16162.2" }, { "database": "Ensembl Peptide", "id": "AT4G16162.2", "url": "https://www.ensemblgenomes.org/id/AT4G16162.2" } ] } }, { "isoform_ac": "F4JLQ0-1", "url": "https://www.uniprot.org/uniprotkb/F4JLP8/entry#F4JLQ0-1", "sequence": { "sequence": "MLINLLNISPRVSFDISPRVSSQRACRASISARDKSRHLSGSIPSEWGLLPLVNITLLGNRLTGPIPKEIGNIITLERLVLENNQLSGTLPPELGRLSNLKRLFLSSNKFRVILKTDQHEDFGSLCKWVIWTYTFVNRSSHKAERFNDKRYDWT", "length": 154, "header": "tr|F4JLQ0-1|F4JLQ0_ARATH Computationally mapped isoform of Leucine-rich repeat (LRR) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JLP8-1" }, "locus": { "chromosome": "4", "start_pos": 9159145, "end_pos": 9161606, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16162.3", "url": 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Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { 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Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes 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"MTNSSQSRKPQVFISFRGKAQRKTLVSFIKSKLEEISEINVFMDEYEIRGRPITTLFERIRESSIALVIFSDKYPESRWCLDELVEIKKQMETGSIVPFPIFYKVKAESVKNQTGHFRNVLLKTEEDVRKKVDRSNIRSILETEDMIWGWRQALVSVGGRMGFSYNHKCDNDFVNDIVVQIKKMLADLSPSPRNGLKIIERPQMHPQEEVTSLLQALNLKKSDLEDLIHINGVVSHGTDRLVFLDLISLQNPILADRLIELVQAGRNLLVLLGSLEYYNKGFTFKRIFLPKKSQQLPGYTVVAESNDNLRNHEVSYSDTVLTCFSFLCNILKRSEMKIDPLSQRVFIGLGEKHLGKFLVSSLKEELESNQILVYVEDETKSRIKESGVAVVFFSKKYPNSEKCLDELVEIKKLMDAGKIDPLPVFYSLKDEPVKNLKGYFLNRLLKIENEVRKNIKTRDDKSILDTEAKIWGWRDALSSIASRPGLSYELSTDDVFVSDIVTKVNELFASRERKKTEAATTVVKTLDADDLFYSRTSFLQAIDRDITDFESFTDIPNGLVLLRLKGHTNLVFLKLSSHENLLQVLYLLSLDFNKRGGEAESIVTSASGSIVAASSMFQPLDNSIRIDLNRQKYAT", "length": 635, "header": "tr|F4JNL1-1|F4JNL1_ARATH Isoform 1 of Disease resistance protein (TIR-NBS-LRR class) family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNL1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B591-1", "url": "https://www.uniprot.org/uniprotkb/F4JNL1/entry#A0A1P8B591-1", "sequence": { "sequence": "MTNSSQSRKPQVFISFRGKAQRKTLVSFIKSKLEEISEINVFMDEYEIRGRPITTLFERIRESSIALVIFSDKYPESRWCLDELVEIKKQMETGSIVPFPIFYKVKAESVKNQTGHFRNVLLKTEEDVRKKVDRSNIRSILETEDMIWGWRQALVSVGGRMGFSYNHKCDNDFVNDIVVQIKKMLADLSPSPRNGLKIIERPQMHPQEEVTSLLQALNLKKSDLEDLIHINGVVSHGTDRLVFLDLISLQNPILADRLIELVQAGRNLLVLLGSLEYYNKGFTFKRIFLPKKSQQLPGYTVVAESNDNLRNHEVSYSDTVLTCFSFLCNILKRSEMKIDPLSQRVFIGLGEKHLGKFLVSSLKEELESNQILVYVEDETKSRIKESGVAVVFFSKKYPNSEKCLDELVEIKKLMDAGKIDPLPVFYSLKDEPVKNLKGYFLNRLLKIENEVRKNIKTRDDKSILDTEAKIWGWRDALSSIASRPGLSYELSTDDVFVSDIVTKVNELFASRERKKTEAATTVVKTLDADDLFYSRTSFLQAIDRDITDFESFTDIPNGLVLLRLKGHTNLVFLKLSSHENLVRFQRSDSFKFLTEGFALNPSGVIRFSEPSLALELESNQSQQ", "length": 623, "header": "tr|A0A1P8B591-1|F4JNL1_ARATH Computationally mapped isoform of Disease resistance protein (TIR-NBS-LRR class) family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNL1-1" }, "locus": { "chromosome": "4", "start_pos": 12268088, "end_pos": 12270739, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23510.3", 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resistance protein (TIR-NBS-LRR class) family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNL1-1" }, "locus": { "chromosome": "4", "start_pos": 12268017, "end_pos": 12270738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23510.2", "url": "https://www.ensemblgenomes.org/id/AT4G23510.2" }, { "database": "Ensembl Peptide", "id": "AT4G23510.2", "url": "https://www.ensemblgenomes.org/id/AT4G23510.2" } ] } }, { "isoform_ac": "F4JNL1-1", "url": "https://www.uniprot.org/uniprotkb/F4JNL1/entry#F4JNL1-1", "sequence": { "sequence": "MTNSSQSRKPQVFISFRGKAQRKTLVSFIKSKLEEISEINVFMDEYEIRGRPITTLFERIRESSIALVIFSDKYPESRWCLDELVEIKKQMETGSIVPFPIFYKVKAESVKNQTGHFRNVLLKTEEDVRKKVDRSNIRSILETEDMIWGWRQALVSVGGRMGFSYNHKCDNDFVNDIVVQIKKMLADLSPSPRNGLKIIERPQMHPQEEVTSLLQALNLKKSDLEDLIHINGVVSHGTDRLVFLDLISLQNPILADRLIELVQAGRNLLVLLGSLEYYNKGFTFKRIFLPKKSQQLPGYTVVAESNDNLRNHEVSYSDTVLTCFSFLCNILKRSEMKIDPLSQRVFIGLGEKHLGKFLVSSLKEELESNQILVYVEDETKSRIKESGVAVVFFSKKYPNSEKCLDELVEIKKLMDAGKIDPLPVFYSLKDEPVKNLKGYFLNRLLKIENEVRKNIKTRDDKSILDTEAKIWGWRDALSSIASRPGLSYELSTDDVFVSDIVTKVNELFASRERKKTEAATTVVKTLDADDLFYSRTSFLQAIDRDITDFESFTDIPNGLVLLRLKGHTNLVFLKLSSHENLLQVLYLLSLDFNKRGGEAESIVTSASGSIVAASSMFQPLDNSIRIDLNRQKYAT", "length": 635, "header": "tr|F4JNL1-1|F4JNL1_ARATH Isoform 1 of Disease resistance protein (TIR-NBS-LRR class) family OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNL1-1" }, "locus": { "chromosome": "4", "start_pos": 12267516, "end_pos": 12270543, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G23510.1", "url": 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Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B591", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B591" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B591", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B591" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G23510", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G23510", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal 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Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B5C1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5C1" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4JNL2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNL2" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B5C1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5C1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G23515", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G23515", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F4JNL2", "url": "https://www.uniprot.org/uniprotkb/F4JNL2" } ], "pmid": "" }, { "name": 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"MKQGSMNRSCLCSVLITTALICGAYFICNAYLAKDFKEKLLKWEITDKMHNSTDKMQNATTTSTCKNFNKPVGTEALPQGIIEKTSNLETQHLWNYDDTKKRRPNHSMSLLAMAVGIKQKELVNKVIQKFPPRDFAVMLFHYDGVVDDWKQYPWNNHAIHVSVMNQTKWWFAKRFLHPDIVAEYEYIFLWDEDLGVGHFNPQRYLSIVKEEGLEISQPALDTSKSEVHHPITARRKKSKVHRRMYKYKGSGRCDDHSTNPPCIGWVEMMAPVFSRAAWRCSWYMIQNDLIHAWGLDTQLGYCAQGDRKKNVGVVDAEYIIHYGLPTLGVVETASSALRNETDSKSTESLESREVDNRPEVRMKSFVEMKRFKERWKKAVRDDTCWVDPY", "length": 389, "header": "tr|F4JRK4-1|F4JRK4_ARATH Isoform 1 of Lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JRK4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B5M6-1", "url": "https://www.uniprot.org/uniprotkb/F4JRK4/entry#A0A1P8B5M6-1", "sequence": { "sequence": 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"sequence": "MNRSCLCSVLITTALICGAYFICNAYLAKDFKEKLLKWEITDKMHNSTDKMQNATTTSTCKNFNKPVGTEALPQGIIEKTSNLETQHLWNYDDTKKRRPNHSMSLLAMAVGIKQKELVNKVIQKFPPRDFAVMLFHYDGVVDDWKQYPWNNHAIHVSVMNQTKWWFAKRFLHPDIVAEYEYIFLWDEDLGVGHFNPQRYLSIVKEEGLEISQPALDTSKSEVHHPITARRKKSKVHRRMYKYKGSGRCDDHSTNPPCIGWVEMMAPVFSRAAWRCSWYMIQNDLIHAWGLDTQLGYCAQGDRKKNVGVVDAEYIIHYGLPTLGVVETASSALRNETDSKSTESLESREVDNRPEVRMKSFVEMKRFKERWKKAVRDDTCWVDPY", "length": 384, "header": "tr|A0A1P8B5N9-1|F4JRK4_ARATH Computationally mapped isoform of Lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JRK4-1" }, "locus": { "chromosome": "4", "start_pos": 10218137, "end_pos": 10220500, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G18530.3", "url": "https://www.ensemblgenomes.org/id/AT4G18530.3" }, { "database": "Ensembl Peptide", "id": "AT4G18530.3", "url": "https://www.ensemblgenomes.org/id/AT4G18530.3" } ] } }, { "isoform_ac": "F4JRK4-1", "url": "https://www.uniprot.org/uniprotkb/F4JRK4/entry#F4JRK4-1", "sequence": { "sequence": "MKQGSMNRSCLCSVLITTALICGAYFICNAYLAKDFKEKLLKWEITDKMHNSTDKMQNATTTSTCKNFNKPVGTEALPQGIIEKTSNLETQHLWNYDDTKKRRPNHSMSLLAMAVGIKQKELVNKVIQKFPPRDFAVMLFHYDGVVDDWKQYPWNNHAIHVSVMNQTKWWFAKRFLHPDIVAEYEYIFLWDEDLGVGHFNPQRYLSIVKEEGLEISQPALDTSKSEVHHPITARRKKSKVHRRMYKYKGSGRCDDHSTNPPCIGWVEMMAPVFSRAAWRCSWYMIQNDLIHAWGLDTQLGYCAQGDRKKNVGVVDAEYIIHYGLPTLGVVETASSALRNETDSKSTESLESREVDNRPEVRMKSFVEMKRFKERWKKAVRDDTCWVDPY", "length": 389, "header": "tr|F4JRK4-1|F4JRK4_ARATH Isoform 1 of Lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JRK4-1" }, "locus": { "chromosome": "4", "start_pos": 10217338, "end_pos": 10220550, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G18530.1", "url": "https://www.ensemblgenomes.org/id/AT4G18530.1" }, { "database": "Ensembl Peptide", "id": "AT4G18530.1", "url": "https://www.ensemblgenomes.org/id/AT4G18530.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B5M6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5M6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B5M6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5M6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G18530", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G18530", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": 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"end_pos": 60, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JRK4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 389, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JRK4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JRK4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 }, { "start_pos": 165, 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"AT4G37080.4", "url": "https://www.ensemblgenomes.org/id/AT4G37080.4" } ] } }, { "isoform_ac": "F4JR96-1", "url": "https://www.uniprot.org/uniprotkb/F4JR96/entry#F4JR96-1", "sequence": { "sequence": "MNTSVRAVLSSMKAPSKHDTTHHQDEKKKMESQGNGAVANSGKSLVNRRRANKEKKMDLLQDVDKLKRKLRQEENVHRALERAFTRPLGALPRLPSYLPRHTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQEAVYISSKRNLESPNNNSLNENSPVRSTKHQRSKSMSQHEFNSMITPTKKHQQSLSRSISSRKLFSSDQTVNDRSGQRVVSGKQASPKSNLSSVTNTKPVDVRGKENQTSSNASKDKKNKESPEKKLGRFLTSVKKKKPLIKPEAAADKHSESTKLQLDDRLADQDKAQESVSGSSSEDKTLQSGNVANRVSEDLLKCLVTIILRISSSKDIVLDPYNNCSEWRTRELGAYKHFSSVDTSSVDLGRRINASFLIHRLKFLLNKLSVVNLDGLSHQQKLAFWINTYNSCVMNAFLEHGIPATPEMVVALMQKATIIVGGHSLNAITIEHFILRLPYHLKFTCPKTATHEEMRAHSTFGLEWSEPLVTFALACGSWSSPAVRVYTAANVEEELEAAKRDYLQASVGISKNNKLMLPKVLDWYLLDFAKDLESLLDWVCLQLPDKLREEATKCMERKNKESLMELVQVVPYDFSFRLLLHQ", "length": 610, "header": "tr|F4JR96-1|F4JR96_ARATH Isoform 1 of Ternary complex factor MIP1 leucine-zipper protein OS=Arabidopsis thaliana OX=3702 GN=AP22.58 PE=1 SV=1 CANONICAL=F4JR96-1" }, "locus": { "chromosome": "4", "start_pos": 17473004, "end_pos": 17476979, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G37080.3", "url": "https://www.ensemblgenomes.org/id/AT4G37080.3" }, { "database": "Ensembl Peptide", "id": "AT4G37080.3", "url": "https://www.ensemblgenomes.org/id/AT4G37080.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 145, "end_pos": 145, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JR96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JR96" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser145" }, { "start_pos": 155, "end_pos": 155, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JR96", "url": 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G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, 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"id": "A0A1P8B5X2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5X2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JR96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JR96" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B5X2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B5X2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G37080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G37080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JR96", "url": "https://www.uniprot.org/uniprotkb/F4JR96" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JR96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JR96" }, { "id": "PF04784", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04784" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF547", "eco_id": "ECO_0000259", "start_pos": 402, "end_pos": 531, "start_aa": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24186:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13962", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G03460", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G03460", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B631", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B631", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B631-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B631-1", 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OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JG84-1" }, "locus": { "chromosome": "4", "start_pos": 1537120, "end_pos": 1539987, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03460.2", "url": "https://www.ensemblgenomes.org/id/AT4G03460.2" }, { "database": "Ensembl Peptide", "id": "AT4G03460.2", "url": "https://www.ensemblgenomes.org/id/AT4G03460.2" } ] } }, { "isoform_ac": "F4JG84-1", "url": "https://www.uniprot.org/uniprotkb/F4JG84/entry#F4JG84-1", "sequence": { "sequence": "MGRSDLDFDRQKKDASSRMFYADETGRTHSLDLSTLFNDTSETVPMGPKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGNTMLHLAAAAGHTDLVCYILNAYPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDISCNKPGVAKKIYFAKDRHQDNALHVSLKRKHLKVASCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQHSNNGSSSTSTLASKIGGRSIVHGAMKARRKDILVAILSEDASLINFRDEGRTCLSFGASLGYYEGFCYLLDKALDSVYVSDDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEKNMDSSYTFFERLTWMALISAGAPRGPKLILSTPVTQNSDGGKYKDRVNTLLLVATLVATMTFTAGFTLPGGYNGSVPNFGMATLAKKTAFQVFLVFDTLAMYCSIITIVALIWAQLGDLSLIMKAFNLALPLLGLALTSMSIAFMAGTYAAVSHLPLLAYFILGIGLIFLLVLLLIIIPYVSPHSPTQPFLRHIFYYPYFLMLLVAGDNRNKY", "length": 628, "header": "tr|F4JG84-1|F4JG84_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4JG84-1" }, "locus": { "chromosome": "4", "start_pos": 1537118, "end_pos": 1540713, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03460.1", "url": 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"keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B631", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B631" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4JG84", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JG84" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B631", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B631" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G03460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4JG84", "url": "https://www.uniprot.org/uniprotkb/F4JG84" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JG84", "url": "https://www.uniprot.org/uniprotkb/F4JG84" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 488, "end_pos": 490, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JG84-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 628, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JG84-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JG84" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JG84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JG84" }, { "id": "PF13962", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PGG", "eco_id": "ECO_0000259", "start_pos": 457, "end_pos": 565, "start_aa": "Lys", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JQ90-1", "uniprot_ac": "F4JQ90", "uniprot_id": "F4JQ90_ARATH", "mass": { "chemical_mass": 62552.0, "monoisotopic_mass": 62552.0 }, "refseq": { "ac": "NP_194760", "name": "FGGY family of carbohydrate kinase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194760" }, "gene_names": [ { "name": "F17I23.350", "type": "synonym", 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"expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JQ90", "locus": {} } ], "crossref": [ { "id": "F4JQ90", "url": "https://alphafold.ebi.ac.uk/entry/F4JQ90", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G30310", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G30310", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd07782", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07782", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "829154", "url": "https://www.ncbi.nlm.nih.gov/gene/829154", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018484", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018484", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018485", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018485", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G30310", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G30310", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HKAMWHE", "url": "https://omabrowser.org/oma/group/HKAMWHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B635", "url": "https://www.orthodb.org/?gene=A0A1P8B635", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JQ90", "url": "https://www.orthodb.org/?gene=F4JQ90", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JQ91", "url": "https://www.orthodb.org/?gene=F4JQ91", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JQ92", "url": "https://www.orthodb.org/?gene=F4JQ92", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43435", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43435", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43435:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43435:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00370", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00370", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_194760", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_194760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G30310", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G30310", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B635", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B635", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B635-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B635-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQ90-1", "url": "https://www.uniprot.org/uniprotkb/F4JQ90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQ91", "url": "https://www.uniprot.org/uniprotkb/F4JQ91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQ91-1", "url": "https://www.uniprot.org/uniprotkb/F4JQ91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQ92", "url": "https://www.uniprot.org/uniprotkb/F4JQ92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQ92-1", "url": "https://www.uniprot.org/uniprotkb/F4JQ92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTAELNPFPSRSVFLGVDVGTGSARAGLFDDNGKLLGSATSPIQIWKDGDCIEQSSTDIWHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMDHRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHAKIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLTKESDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNRSPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACGGLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQVVHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA", "length": 579, "header": "tr|F4JQ90-1|F4JQ90_ARATH Isoform 1 of FGGY carbohydrate kinase domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQ90-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B635-1", "url": "https://www.uniprot.org/uniprotkb/F4JQ90/entry#A0A1P8B635-1", "sequence": { "sequence": "MDHRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHAKIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLTKESDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNRSPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACGGLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQVVHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA", "length": 461, "header": "tr|A0A1P8B635-1|F4JQ90_ARATH Computationally mapped isoform of FGGY carbohydrate kinase domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQ90-1" }, "locus": { "chromosome": "4", "start_pos": 14831738, "end_pos": 14835343, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G30310.4", "url": "https://www.ensemblgenomes.org/id/AT4G30310.4" }, { "database": "Ensembl Peptide", "id": "AT4G30310.4", "url": "https://www.ensemblgenomes.org/id/AT4G30310.4" } ] } }, { "isoform_ac": "F4JQ90-1", "url": "https://www.uniprot.org/uniprotkb/F4JQ90/entry#F4JQ90-1", "sequence": { "sequence": "MTTAELNPFPSRSVFLGVDVGTGSARAGLFDDNGKLLGSATSPIQIWKDGDCIEQSSTDIWHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMDHRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHAKIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLTKESDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNRSPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACGGLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQVVHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA", "length": 579, "header": "tr|F4JQ90-1|F4JQ90_ARATH Isoform 1 of FGGY carbohydrate kinase domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQ90-1" }, "locus": { "chromosome": "4", "start_pos": 14831861, "end_pos": 14835343, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G30310.2", "url": "https://www.ensemblgenomes.org/id/AT4G30310.2" }, { "database": "Ensembl Peptide", "id": "AT4G30310.2", "url": "https://www.ensemblgenomes.org/id/AT4G30310.2" } ] } }, { "isoform_ac": "F4JQ91-1", "url": "https://www.uniprot.org/uniprotkb/F4JQ90/entry#F4JQ91-1", "sequence": { "sequence": "MTTAELNPFPSRSVFLGVDVGTGSARAGLFDDNGKLLGSATSPIQIWKDGDCIEQSSTDIWHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMDHRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHAKIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMEKSDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNRSPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACGGLSKNPLFIQEHADIVVRLFFLEKASLFS", "length": 499, "header": "tr|F4JQ91-1|F4JQ91_ARATH Computationally mapped isoform of FGGY carbohydrate kinase domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQ90-1" }, "locus": { "chromosome": "4", "start_pos": 14831875, "end_pos": 14835166, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G30310.1", "url": "https://www.ensemblgenomes.org/id/AT4G30310.1" }, { "database": "Ensembl Peptide", "id": "AT4G30310.1", "url": "https://www.ensemblgenomes.org/id/AT4G30310.1" } ] } }, { "isoform_ac": "F4JQ92-1", "url": "https://www.uniprot.org/uniprotkb/F4JQ90/entry#F4JQ92-1", "sequence": { "sequence": "MDHRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHAKIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMEKSDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNRSPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACGGLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQVVHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA", "length": 451, "header": "tr|F4JQ92-1|F4JQ92_ARATH Computationally mapped isoform of FGGY family of carbohydrate kinase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQ90-1" }, "locus": { "chromosome": "4", "start_pos": 14832316, "end_pos": 14835092, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G30310.3", "url": "https://www.ensemblgenomes.org/id/AT4G30310.3" }, { "database": "Ensembl Peptide", "id": "AT4G30310.3", "url": "https://www.ensemblgenomes.org/id/AT4G30310.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 11, "end_pos": 11, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQ91", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQ91" } ], "site_lbl": "Ser11" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G30310", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G30310", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2AJL3-1", "protein_name": "FGGY carbohydrate kinase domain-containing protein", "gene_name": "Fggy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMSGRDQEPSRYYVGIDVGTGSVRAALVDQRGLLLAFAEQPIKKWEPQFNHHEQSSEDIWAACCLVTKEVVQGIDAHRIRGLGFDATCSLVVLDKEFHPLPVNHEGDSSRNVIMWLDHRAVSQVHRINETKHRVLQYVGGVMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTARSLCSLVCKWTYSAEKGWDDSFWKMIGLEDLIDDNYSKIGNLVLLPGAALGIGLTPEAARELGLPSGIAVAASLIDAHAGGLGVIGADVRGHGLTCEGQPVTSRLAVICGTSSCHMGISKDPVFVPGVWGPYYSAMVPGFWLNEGGQSVTGKLIDHMVQGHPAFPELQAKATARCQSIYAYLNSHLDLIKKAQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLTLSQDLDDLAILYLATVQAIAFGTRFIIETMEAAGHSLSTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGACASGDFTSVQEAMARMSKVGKVVFPEHADKKYYDKKYQVFLRMVEHQKEYSAIMNGS", "length": 552 }, "evidence": [ { "id": "F4JQ90", "url": "https://omabrowser.org/oma/group/F4JQ90/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1BNF8-1", "protein_name": "FGGY carbohydrate kinase domain-containing protein", "gene_name": "FGGY", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPGGNEPRSYYVGMDVGTGSVRAALVDQRGTLLAFADQPINQWEPQFNHHEQSSEDIWAACCVVSKKVVQGVNLHQIRGLGFDATCSLVVLDKQFRPLPVNPEGDSRRNIIMWLDHRAVSQVHRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLRETCWDKAGHFFDLPDFLSWKATGVTARSLCSLVCKWTYSAEKGWDDSFWKMVGLEDLVTDNYSKIGNQVLPPGASLGSGLTPEAAKDLGLPPGIAVAASLIDAHAGGLGVIGADVKGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAAFPELQAKATARGQSVYAYLNSHLDLIKKAQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLKLSQDLDDLAILYLATVQAIAFGTRLIIEAMESAGHSISTLFLCGGLSKNPLFVQMHADITGLPVVLSQEVESVLVGAAVLGACASGDFASVQEAMAKMSKVGKVVFPRHEDKRYYDKKYQVFLKLVEHQKEYAAIMKGD", "length": 550 }, "evidence": [ { "id": "F4JQ90", "url": "https://omabrowser.org/oma/group/F4JQ90/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1LSP9-1", "protein_name": "FGGY carbohydrate kinase domain-containing protein", "gene_name": "Fggy", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDIQTHVLTHMQQVLPLAEPLPSPVHGRGTMMSGGDQEPDHYYVGIDVGTGSVRAALVDQRGVLLAFAEQPIKKWEPQFNHHEQSSEDIWAACCRVTKEIVQGIDAHRIRGLGFDATCSLVVLDKEFHPLPVNREGDSSRNIIMWLDHRAVSQVHRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTARSLCSLVCKWTYSAEKGWDDSFWKMIGLEDLIGDNYNKIGNLVLPPGASLGSGLIPEAARELGLPSGIAVAASLIDAHAGGLGVIGADVRGHGLTCEGQPVTSRLAVICGTSSCHMGISKDPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQSHPAFPELQAKATARCQSIYAYLNSHLDLIKKAQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLTLSRDLDDLAVLYLATIQAIAFGTRFIIETMEAAGHSLSTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGACASGDFASVQEAMARMSKVGKVVFPERADKKYYDKKYQVFLRMVEHQKEYSAIMNGS", "length": 582 }, "evidence": [ { "id": "F4JQ90", "url": "https://omabrowser.org/oma/group/F4JQ90/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q04585-1", "protein_name": "D-ribulokinase YDR109C", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MKSRKRQNNMQNETREPAVLSSQETSISRISPQDPEAKFYVGVDVGTGSARACVIDQSGNMLSLAEKPIKREQLISNFITQSSREIWNAVCYCVRTVVEESGVDPERVRGIGFDATCSLVVVSATNFEEIAVGPDFTNNDQNIILWMDHRAMKETEEINSSGDKCLKYVGGQMSVEMEIPKIKWLKNNLEAGIFQDCKFFDLPDYLTFKATGKENRSFCSAVCKQGFLPVGVEGSDIGWSKEFLNSIGLSELTKNDFERLGGSLREKKNFLTAGECISPLDKKAACQLGLTEHCVVSSGIIDAYAGWVGTVAAKPESAVKGLAETENYKKDFNGAIGRLAAVAGTSTCHILLSKNPIFVHGVWGPYRDVLARGFWAAEGGQSCTGVLLDHLITTHPAFTELSHMANLAGVSKFEYLNKILETLVEKRKVRSVISLAKHLFFYGDYHGNRSPIADPNMRACIIGQSMDNSIEDLAVMYLSACEFISQQTRQIIEVMLKSGHEINAIFMSGGQCRNSLLMRLLADCTGLPIVIPRYVDAAVVFGSALLGAAASEDFDYTREKRTLKGQKSSQTKTERFNDSYSSIQKLSMEDRNSTNGFVSPHNLQLSTPSAPAKINNYSLPICTQQPLDKTSEESSKDASLTVGQESLGEGRYNGTSFLWKVMQELTGNARIVNPNEKTHPDRILLDTKYQIFLDMIETQRKYRRMVDKVEGSFSR", "length": 715 }, "evidence": [ { "id": "F4JQ90", "url": "https://omabrowser.org/oma/group/F4JQ90/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q96C11-1", "protein_name": "FGGY carbohydrate kinase domain-containing protein", "gene_name": "FGGY", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGGEQKPERYYVGVDVGTGSVRAALVDQSGVLLAFADQPIKNWEPQFNHHEQSSEDIWAACCVVTKKVVQGIDLNQIRGLGFDATCSLVVLDKQFHPLPVNQEGDSHRNVIMWLDHRAVSQVNRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTARSLCSLVCKWTYSAEKGWDDSFWKMIGLEDFVADNYSKIGNQVLPPGASLGNGLTPEAARDLGLLPGIAVAASLIDAHAGGLGVIGADVRGHGLICEGQPVTSRLAVICGTSSCHMGISKDPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHAAFPELQVKATARCQSIYAYLNSHLDLIKKAQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLKLSQDLDDLAILYLATVQAIALGTRFIIEAMEAAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAVLGACASGDFASVQEAMAKMSKVGKVVFPRLQDKKYYDKKYQVFLKLVEHQKEYLAIMNDD", "length": 551 }, "evidence": [ { "id": "F4JQ90", "url": "https://omabrowser.org/oma/group/F4JQ90/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VZJ8-1", "protein_name": "FGGY carbohydrate kinase domain-containing protein", "gene_name": "Dmel\\CG11594", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSSGPFFVGVDVGTGSARAALVACDGRVLEQAVQTIQTWNPEPGYYNQSSDNIWQSICQVVKKVIGGVDKSKVKGIGFDATCSLVVLGPQGSPLTVSKSGEAEQNIILWMDHRAEQETQEINAFKHSLLKYVGGQVSLEMEVPKLLWLKRNLSQTFGNIWRVFDLPDFLTWRATGVDTRSLCSVVCKWNYDAANGSWNKEFLKQADLEELTQNNFEKLGSDVQPPGRTVGKGLTAKAAGELGLSAGTVVSTSLIDAHAGALGMFGCRSKESKGADDVQGKMALIAGTSTCHMSITRKACFAQGVWGPYQDAIIPGYFLNEGGQSIAGHLLDHVLKSHESYAELKSQLGEDKFIYQHLNKLLPELAAARGLSQVGCLTQDVHVWPDLHGNRSPIADPTLRGVITGLDMTRGTESLAIKYLAFVQALAYGTRHIIENLYQYGRAPFQTLLFCGGLAKNPLYVQCHADICNLPALIPDEQEMVLVGAAALGAAASGHFDSLESASKSMGGTGQLVKPNAETLEFHNRKYKVFLQLLENQRQYRRIMQADTK", "length": 548 }, "evidence": [ { "id": "F4JQ90", "url": "https://omabrowser.org/oma/group/F4JQ90/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" }, { "name": "pentose metabolic process", "id": "GO:0019321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019321", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" }, { "name": "phosphotransferase activity, alcohol group as acceptor", "id": "GO:0016773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016773", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" }, { "name": "D-ribulokinase activity", "id": "GO:0019150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019150", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JQ90", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JQ90-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 579, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JQ90-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JQ90" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JQ90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" }, { "id": "PF02782", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02782" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Carbohydrate kinase FGGY C-terminal", "eco_id": "ECO_0000259", "start_pos": 311, "end_pos": 520, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4JQ90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQ90" }, { "id": "PF00370", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00370" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Carbohydrate kinase FGGY N-terminal", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 286, "start_aa": "Phe", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 11 ], "sequon_annotation_sites": [ { "start_pos": 419, "end_pos": 421 }, { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JM74-1", "uniprot_ac": "F4JM74", "uniprot_id": "F4JM74_ARATH", "mass": { "chemical_mass": 50643.0, "monoisotopic_mass": 50643.0 }, "refseq": {}, "gene_names": [ { "name": "M4E13.90", "type": "synonym", "evidence": [ { "id": "F4JM74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JM74" } ] }, { "name": "M4E13_90", "type": "synonym", "evidence": [ { "id": "F4JM74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JM74" } ] } ], "protein_names": [ { "name": "Protein kinase superfamily protein", "type": "synonym", "evidence": [ { "id": "F4JM74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JM74/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JM74", "url": "https://www.uniprot.org/uniprotkb/F4JM74" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JM74", "locus": {} } ], "crossref": [ { "id": "AT4G35030", "url": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR47987:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47987:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07714", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07714", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G35030", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G35030", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B693", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B693", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B693-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B693-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B696", 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"MGEEKRRISGRSVSLPSIDILLDEKPGWPFLKRASLGTPQQVHKWHTRKVSVVNWVMSLPERFPNHQQTLNYETSLIKKQIKDILRDNNKWFNYNVLRKATSDFSQENVIGKGGCNEVYRGILEDGKGIAVKILKSSSKEAMTNFVHEINIISSLSHQNISPLLGVCVQDNELISVYNLSNTGSLEETLHGKQKGKYVLSWEERFKIAIGLAEALDYLHNRCSKPVIHRDVKTSNVLLSLELQPQLSDFGLSMWGPTTSSRYSIQGDVVGTFGYLAPEYFMYGKVSDKVDVYAFGVVLLELISGRNPISPQNPRGQESLVMWAKPLIDTGNLKVLLDPDVTDIFDESQFQRMVLAASHCLTRSATHRPNIRQILRLLRDENEAGKWIMEEEGNEDCFDDEVYPNSSTELHLNLAMLEVEDDETASISSMERSNNSLFSSTCSSRELQT", "length": 448, "header": "tr|F4JM74-1|F4JM74_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JM74-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B693-1", "url": "https://www.uniprot.org/uniprotkb/F4JM74/entry#A0A1P8B693-1", "sequence": { "sequence": 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"MTNFVHEINIISSLSHQNISPLLGVCVQDNELISVYNLSNTGSLEETLHGKQKGKYVLSWEERFKIAIGLAEALDYLHNRCSKPVIHRDVKTSNVLLSLELQPQLSDFGLSMWGPTTSSRYSIQGDVVGTFGYLAPEYFMYGKVSDKVDVYAFGVVLLELISGRNPISPQNPRGQESLVMWAKPLIDTGNLKVLLDPDVTDIFDESQFQRMVLAASHCLTRSATHRPNIRQILRLLRDENEAGKWIMEEEGNEDCFDDEVYPNSSTELHLNLAMLEVEDDETASISSMERSNNSLFSSTCSSRELQT", "length": 307, "header": "tr|A0A1P8B696-1|F4JM74_ARATH Computationally mapped isoform of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JM74-1" }, "locus": { "chromosome": "4", "start_pos": 16676129, "end_pos": 16678154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G35030.9", "url": "https://www.ensemblgenomes.org/id/AT4G35030.9" }, { "database": "Ensembl Peptide", "id": "AT4G35030.9", "url": "https://www.ensemblgenomes.org/id/AT4G35030.9" } ] } }, { "isoform_ac": "F4JM74-1", "url": "https://www.uniprot.org/uniprotkb/F4JM74/entry#F4JM74-1", "sequence": { "sequence": "MGEEKRRISGRSVSLPSIDILLDEKPGWPFLKRASLGTPQQVHKWHTRKVSVVNWVMSLPERFPNHQQTLNYETSLIKKQIKDILRDNNKWFNYNVLRKATSDFSQENVIGKGGCNEVYRGILEDGKGIAVKILKSSSKEAMTNFVHEINIISSLSHQNISPLLGVCVQDNELISVYNLSNTGSLEETLHGKQKGKYVLSWEERFKIAIGLAEALDYLHNRCSKPVIHRDVKTSNVLLSLELQPQLSDFGLSMWGPTTSSRYSIQGDVVGTFGYLAPEYFMYGKVSDKVDVYAFGVVLLELISGRNPISPQNPRGQESLVMWAKPLIDTGNLKVLLDPDVTDIFDESQFQRMVLAASHCLTRSATHRPNIRQILRLLRDENEAGKWIMEEEGNEDCFDDEVYPNSSTELHLNLAMLEVEDDETASISSMERSNNSLFSSTCSSRELQT", "length": 448, "header": "tr|F4JM74-1|F4JM74_ARATH Isoform 1 of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JM74-1" }, "locus": { "chromosome": "4", "start_pos": 16675382, "end_pos": 16678178, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G35030.5", "url": "https://www.ensemblgenomes.org/id/AT4G35030.5" }, { "database": "Ensembl Peptide", "id": "AT4G35030.5", "url": "https://www.ensemblgenomes.org/id/AT4G35030.5" } ] } }, { "isoform_ac": "F4JM75-1", "url": "https://www.uniprot.org/uniprotkb/F4JM74/entry#F4JM75-1", "sequence": { "sequence": "MGEEKRRISGRSVSLPSIDILLDEKPGWPFLKRASLGTPQQVHKWHTRKVSVVNWVMSLPERFPNHQQTLNYETSLIKKQIKDILRDNNKWFNYNVLRKATSDFSQENVIGKGGCNEVYRGILEDGKGIAVKILKSSSKEAMTNFVHEINIISSLSHQNISPLLGVCVQDNELISVYNLSNTGSLEETLHGKQKGKYVLSWEERFKIAIGLAEALDYLHNRCSKPVIHRDVKTSNVLLSLELQPQLSDFGLSMWGPTTSSRYSIQGDVVGTFGYLAPEYFMYGKVSDKVDVYAFGVVLLELISGRNPISPQNPRGQESLVMWAKPLIDTGNLKVLLDPDVTDIFDESQFQRMVLAASHCLTRSATHRPNIRQVRFCFIP", "length": 379, "header": "tr|F4JM75-1|F4JM75_ARATH Computationally mapped isoform of Protein kinase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JM74-1" }, "locus": { "chromosome": "4", "start_pos": 16675966, "end_pos": 16678113, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G35030.2", "url": "https://www.ensemblgenomes.org/id/AT4G35030.2" }, { "database": "Ensembl Peptide", "id": "AT4G35030.2", "url": "https://www.ensemblgenomes.org/id/AT4G35030.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 257, "start_aa": "Thr", "end_pos": 257, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr257", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B693", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B693" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B693", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B693" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G35030", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G35030", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "F4JM74", "url": "https://www.uniprot.org/uniprotkb/F4JM74" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F4JM74", "url": "https://www.uniprot.org/uniprotkb/F4JM74" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", 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"uniprot_ac": "F4JK86", "uniprot_id": "F4JK86_ARATH", "mass": { "chemical_mass": 30420.0, "monoisotopic_mass": 30420.0 }, "refseq": { "ac": "NP_680702", "name": "FAD/NAD(P)-binding oxidoreductase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680702" }, "gene_names": [], "protein_names": [ { "name": "FAD/NAD(P)-binding oxidoreductase family protein", "type": "synonym", "evidence": [ { "id": "NP_680702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680702" }, { "id": "F4JK86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK86/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JK86", "url": "https://www.uniprot.org/uniprotkb/F4JK86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G15765", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B6B9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6B9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JK86", "url": "https://www.uniprot.org/uniprotkb/F4JK86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JK86-1", "url": "https://www.uniprot.org/uniprotkb/F4JK86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEELDIVIVGGGIAGLATSLALHRKGIKSVVLERSESVRSEGAAFWIRDVLIEKGIKRRESVGPASYGEVRGVLRNDLVRALAHALPLGTLRLGCHILSVKLDETKSFPIVHVLIGCDGSNSVVSRFLGLNPTKDLGSRAIRGFTNYPDDHGFRQEFIRIKMDNVVSGRLPITHKLVFWFVVLRNCPQDSNFLKNQEDIARLALASVREFSEEWKEMVKNCDMDSLYINRLRYRAPWDVLSGKFRRGTVTVGRRQYAPNGPILRTRMFGCA", "length": 271, "header": "tr|F4JK86-1|F4JK86_ARATH Isoform 1 of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JK86-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B6B9-1", "url": "https://www.uniprot.org/uniprotkb/F4JK86/entry#A0A1P8B6B9-1", "sequence": { "sequence": "MLFLLALSGLVAIFCRLSSTKQNRFRLCTLKTGEAIKAKVLIGCDGSNSVVSRFLGLNPTKDLGSRAIRGFTNYPDDHGFRQEFIRIKMDNVVSGRLPITHKLVFWFVVLRNCPQDSNFLKNQEDIARLALASVREFSEEWKEMVKNCDMDSLYINRLRYRAPWDVLSGKFRRGTVTVGRRQYAPNGPILRTRMFGCA", "length": 198, "header": "tr|A0A1P8B6B9-1|F4JK86_ARATH Computationally mapped isoform of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JK86-1" }, "locus": { "chromosome": "4", "start_pos": 8975280, "end_pos": 8977451, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15765.4", "url": "https://www.ensemblgenomes.org/id/AT4G15765.4" }, { "database": "Ensembl Peptide", "id": "AT4G15765.4", "url": "https://www.ensemblgenomes.org/id/AT4G15765.4" } ] } }, { "isoform_ac": "F4JK86-1", "url": "https://www.uniprot.org/uniprotkb/F4JK86/entry#F4JK86-1", "sequence": { "sequence": "MEELDIVIVGGGIAGLATSLALHRKGIKSVVLERSESVRSEGAAFWIRDVLIEKGIKRRESVGPASYGEVRGVLRNDLVRALAHALPLGTLRLGCHILSVKLDETKSFPIVHVLIGCDGSNSVVSRFLGLNPTKDLGSRAIRGFTNYPDDHGFRQEFIRIKMDNVVSGRLPITHKLVFWFVVLRNCPQDSNFLKNQEDIARLALASVREFSEEWKEMVKNCDMDSLYINRLRYRAPWDVLSGKFRRGTVTVGRRQYAPNGPILRTRMFGCA", "length": 271, "header": "tr|F4JK86-1|F4JK86_ARATH Isoform 1 of FAD/NAD(P)-binding oxidoreductase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JK86-1" }, "locus": { "chromosome": "4", "start_pos": 8975404, "end_pos": 8977211, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15765.1", "url": "https://www.ensemblgenomes.org/id/AT4G15765.1" }, { "database": "Ensembl Peptide", "id": "AT4G15765.1", "url": "https://www.ensemblgenomes.org/id/AT4G15765.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 250, "start_aa": "Thr", "end_pos": 250, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr250", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 227, "end_pos": 227, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B6B9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B6B9" } ], "site_lbl": "Tyr227" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis 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Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6B9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6B9" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6B9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6B9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G15765", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15765", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "monooxygenase activity", "id": "GO:0004497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004497", "evidence": [ { "database": "UniProtKB", "id": "F4JK86", "url": "https://www.uniprot.org/uniprotkb/F4JK86" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JK86", "url": "https://www.uniprot.org/uniprotkb/F4JK86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JK86-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 271, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JK86-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JK86" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JK86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK86" }, { "id": "PF01266", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01266" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAD 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G09780", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B6I5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6I5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6I5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKT0", "url": "https://www.uniprot.org/uniprotkb/F4JKT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKT0-1", "url": "https://www.uniprot.org/uniprotkb/F4JKT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLFSRVLLFLKKKSFSIAVSSLYFYICKSHFCLPYIYTTLKSTIFCPKKFIIMETLREEAPSSYLMKLVGFSEVKFSHQPYESADFDAAGHKWRLIFYPAGKVEEGGKDHISIYARVENVGASEMQIDVELKFFLYNHNAKKYSVFQDGTVKHYSKEKKECGFAQMLLRSKFNDPKNGYTDGDACIVGVEIFVIKPIEKVERVVFTQNPPTNKFTWKISDFSKLGDKKYHYSDEFVVGERKWRIKISPKGDKKVRALSVYVQAMEYLPNAVASTTYAKLKLQLMNQKNTNHIEKRGTYQTSFFLYLVFHFFSREKEDGYGTSELISVEDLNDESKGYLVEDTIVLETTLLCVTETKVKLCDMCKYKFFLLNPRQHAKSHWKKKKNMHNHLLQLWCNPHNRLYVFGVVFLGLFDNVDASAEGEVYQI", "length": 427, "header": "tr|F4JKT0-1|F4JKT0_ARATH Isoform 1 of TRAF-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKT0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B6I5-1", "url": "https://www.uniprot.org/uniprotkb/F4JKT0/entry#A0A1P8B6I5-1", "sequence": { "sequence": "MTLFSRVLLFLKKKSFSIAVSSLYFYICKSHFCLPYIYTTLKSTIFCPKKFIIMETLREEAPSSYLMKLVGFSEVKFSHQPYESADFDAAGHKWRLIFYPAGKVEEGGKDHISIYARVENVGASEMQIDVELKFFLYNHNAKKYSVFQDGTVKHYSKEKKECGFAQMLLRSKFNDPKNGYTDGDACIVGVEIFVIKPIEKVERVVFTQNPPTNKFTWKISDFSKLGDKKYHYSDEFVVGERKWRIKISPKGDKKVRALSVYVQAMEYLPNAVASTTYAKLKLQLMNQKNTNHIEKRVFHFFSREKEDGYGTSELISVEDLNDESKGYLVEDTIVLETTLLCVTETKVKLCDMCKYKFFLLNPRQHAKSHWKKKKNMHNHLLQLWCNPHNRLYVFGVVFLGLFDNVDASAEGEVYQI", "length": 416, "header": "tr|A0A1P8B6I5-1|F4JKT0_ARATH Computationally mapped isoform of TRAF-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKT0-1" }, "locus": { "chromosome": "4", "start_pos": 6159538, "end_pos": 6161378, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G09780.2", "url": "https://www.ensemblgenomes.org/id/AT4G09780.2" }, { "database": "Ensembl Peptide", "id": "AT4G09780.2", "url": "https://www.ensemblgenomes.org/id/AT4G09780.2" } ] } }, { "isoform_ac": "F4JKT0-1", "url": "https://www.uniprot.org/uniprotkb/F4JKT0/entry#F4JKT0-1", "sequence": { "sequence": "MTLFSRVLLFLKKKSFSIAVSSLYFYICKSHFCLPYIYTTLKSTIFCPKKFIIMETLREEAPSSYLMKLVGFSEVKFSHQPYESADFDAAGHKWRLIFYPAGKVEEGGKDHISIYARVENVGASEMQIDVELKFFLYNHNAKKYSVFQDGTVKHYSKEKKECGFAQMLLRSKFNDPKNGYTDGDACIVGVEIFVIKPIEKVERVVFTQNPPTNKFTWKISDFSKLGDKKYHYSDEFVVGERKWRIKISPKGDKKVRALSVYVQAMEYLPNAVASTTYAKLKLQLMNQKNTNHIEKRGTYQTSFFLYLVFHFFSREKEDGYGTSELISVEDLNDESKGYLVEDTIVLETTLLCVTETKVKLCDMCKYKFFLLNPRQHAKSHWKKKKNMHNHLLQLWCNPHNRLYVFGVVFLGLFDNVDASAEGEVYQI", "length": 427, "header": "tr|F4JKT0-1|F4JKT0_ARATH Isoform 1 of TRAF-like family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKT0-1" }, "locus": { "chromosome": "4", "start_pos": 6159538, "end_pos": 6161378, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G09780.1", "url": "https://www.ensemblgenomes.org/id/AT4G09780.1" }, { "database": "Ensembl Peptide", "id": "AT4G09780.1", "url": "https://www.ensemblgenomes.org/id/AT4G09780.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 99, "end_pos": 99, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JKT0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKT0" } ], "site_lbl": "Tyr99" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6I5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6I5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6I5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6I5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G09780", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G09780", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JKT0", "url": "https://www.uniprot.org/uniprotkb/F4JKT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JKT0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 427, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JKT0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JKT0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JKT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKT0" }, { "id": "PS50144", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50144" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MATH", "eco_id": "ECO_0000259", "start_pos": 62, "end_pos": 192, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 99 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JNB2-1", "uniprot_ac": "F4JNB2", "uniprot_id": "F4JNB2_ARATH", "mass": { "chemical_mass": 117662.0, "monoisotopic_mass": 117662.0 }, "refseq": { "ac": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G16900", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YLEWEGF", "url": "https://omabrowser.org/oma/group/YLEWEGF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11017:SF274", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11017:SF274", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07725", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07725", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_193424", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193424", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16301", "url": "https://www.rhea-db.org/rhea/16301", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT4G16900", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G16900", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B6Q6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6R0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6R0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6R0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNB2", "url": "https://www.uniprot.org/uniprotkb/F4JNB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNB2-1", "url": "https://www.uniprot.org/uniprotkb/F4JNB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAASSSCSRRYDVFPSFSGVDVRKTFLSNLLEAFDRRSINTFMDHGIERSRTIAPELISAIREARISIVIFSKNYASSTWCLDELVEIHNRLNDWGQLVISVFYDVDPSEVRKQTGEFGDVFKKTCEDKEEDQKQRWMQALVDITNIAGEDLRNGPSEAAMVVKIANDVSNKLISPSNSFGDFVGIEAHLEAMNSILCLESKEARMVGIWGPSGIGKSTIGKALYSQLFCQFHFHAFVPHVYSMKSEWEEIFLSKILGKDIKIGGKLGVVEQMLNQKKVLIVLDDVDDPEFLKTLVGETKWFGPGSRIIVITQDMQLLKAHDIDLLYEVKFPSLDLALKMLCRSAFGENSPPDDFKALAFEVAVLAGNLPLGLSVLGSSLKRRTKEEWMEMMPRFRNGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLFNGFEVSYVNDLLEDNVGVTMLVEKSLIRITPDGDIEMHNLLEKLGIEIDRAKSKETVLGIRFCTAFRSKELLPIDEKSFQGMRNLQCLSVTGDYMDLPQSLVYLPPKLRLLDWDRCPLKCLPYSFKADYLIQLTMMGSKLEKLWEGTVPLGSLKRMNMHGSRYLREISDLSNARNLEELNLSECRSLVTLSSSIQNAIKLIYLDMRGCTKLESFPTHLNLESLEYLENCIWNKNLPGLDYLACLVRCMPCEFRPNDLVRLIVRGNQMLEKLWEGVQSLASLVEMDMSECGNLTEIPDLSKATNLVNLYLSNCKSLVTVPSTIGNLQKLVRLEMKECTGLEVLPTDVNLSSLKMLDLSGCSSLRTFPLISKSIKWLYLENTAIEEVPCCIENFSWLTVLMMYCCKRLKNISPNIFRLTILKLVDFTECRGVNVAMSDASVEDHSSYIPLYENIEYTRHRFWENLNHKHLACRAGGVSDKWEGVGHKLGQREIMRAKLGSPPRAAGRVTVELEAAGRLSDQLGGYPDGYLGGYGRTGARPKGRVPKTFRGTRTHRKYRKLTIKLSSFRENKSSEEIGSRTVTGKEEEGSDRPNIVKEGKGNLDLESKDSRIR", "length": 1040, "header": "tr|F4JNB2-1|F4JNB2_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=DL4480C PE=4 SV=1 CANONICAL=F4JNB2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B6Q6-1", "url": "https://www.uniprot.org/uniprotkb/F4JNB2/entry#A0A1P8B6Q6-1", "sequence": { "sequence": "MAAASSSCSRRYDVFPSFSGVDVRKTFLSNLLEAFDRRSINTFMDHGIERSRTIAPELISAIREARISIVIFSKNYASSTWCLDELVEIHNRLNDWGQLVISVFYDVDPSEVRKQTGEFGDVFKKTCEDKEEDQKQRWMQALVDITNIAGEDLRNGPSEAAMVVKIANDVSNKLISPSNSFGDFVGIEAHLEAMNSILCLESKEARMVGIWGPSGIGKSTIGKALYSQLFCQFHFHAFVPHVYSMKSEWEEIFLSKILGKDIKIGGKLGVVEQMLNQKKVLIVLDDVDDPEFLKTLVGETKWFGPGSRIIVITQDMQLLKAHDIDLLYEVKFPSLDLALKMLCRSAFGENSPPDDFKALAFEVAVLAGNLPLGLSVLGSSLKRRTKEEWMEMMPRFRNGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLFNGFEVSYVNDLLEDNVGVTMLVEKSLIRITPDGDIEMHNLLEKLGIEIDRAKSKETVLGIRFCTAFRSKELLPIDEKSFQGMRNLQCLSVTGDYMDLPQSLVYLPPKLRLLDWDRCPLKCLPYSFKADYLIQLTMMGSKLEKLWEGTVPLGSLKRMNMHGSRYLREISDLSNARNLEELNLSECRSLVTLSSSIQNAIKLIYLDMRGCTKLESFPTHLNLESLEYLENCIWNKNLPGLDYLACLVRCMPCEFRPNDLVRLIVRGNQMLEKLWEGVQSLASLVEMDMSECGNLTEIPDLSKATNLVNLYLSNCKSLVTVPSTIGNLQKLVRLEMKECTGLEVLPTDVNLSSLKMLDLSGCSSLRTFPLISKSIKWLYLENTAIEEVPCCIENFSWLTVLMMYCCKRLKNISPNIFRLTILKLVDFTECRGVNVAMSDASVEDHSSYIPLYENIEYTRHRFWENLNHKHLACRAGYL", "length": 905, "header": "tr|A0A1P8B6Q6-1|F4JNB2_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=DL4480C PE=4 SV=1 CANONICAL=F4JNB2-1" }, "locus": { "chromosome": "4", "start_pos": 9512982, "end_pos": 9516541, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16900.2", "url": "https://www.ensemblgenomes.org/id/AT4G16900.2" }, { "database": "Ensembl Peptide", "id": "AT4G16900.2", "url": "https://www.ensemblgenomes.org/id/AT4G16900.2" } ] } }, { "isoform_ac": "A0A1P8B6R0-1", "url": "https://www.uniprot.org/uniprotkb/F4JNB2/entry#A0A1P8B6R0-1", "sequence": { "sequence": "MAAASSSCSRRYDVFPSFSGVDVRKTFLSNLLEAFDRRSINTFMDHGIERSRTIAPELISAIREARISIVIFSKNYASSTWCLDELVEIHNRLNDWGQLVISVFYDVDPSEVRKQTGEFGDVFKKTCEDKEEDQKQRWMQALVDITNIAGEDLRNGPSEAAMVVKIANDVSNKLISPSNSFGDFVGIEAHLEAMNSILCLESKEARMVGIWGPSGIGKSTIGKALYSQLFCQFHFHAFVPHVYSMKSEWEEIFLSKILGKDIKIGGKLGVVEQMLNQKKVLIVLDDVDDPEFLKTLVGETKWFGPGSRIIVITQDMQLLKAHDIDLLYEVKFPSLDLALKMLCRSAFGENSPPDDFKALAFEVAVLAGNLPLGLSVLGSSLKRRTKEEWMEMMPRFRNGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLFNGFEVSYVNDLLEDNVGVTMLVEKSLIRITPDGDIEMHNLLEKLGIEIDRAKSKETVLGIRFCTAFRSKELLPIDEKSFQGMRNLQCLSVTGDYMDLPQSLVYLPPKLRLLDWDRCPLKCLPYSFKADYLIQLTMMGSKLEKLWEGTVPLGSLKRMNMHGSRYLREISDLSNARNLEELNLSECRSLVTLSSSIQNAIKLIYLDMRGCTKLESFPTHLNLESLEYLGLLYYDNLRKISLCLKWKLQLLRHMELRSA", "length": 686, "header": "tr|A0A1P8B6R0-1|F4JNB2_ARATH Computationally mapped isoform of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=DL4480C PE=4 SV=1 CANONICAL=F4JNB2-1" }, "locus": { "chromosome": "4", "start_pos": 9513954, "end_pos": 9516688, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16900.3", "url": "https://www.ensemblgenomes.org/id/AT4G16900.3" }, { "database": "Ensembl Peptide", "id": "AT4G16900.3", "url": "https://www.ensemblgenomes.org/id/AT4G16900.3" } ] } }, { "isoform_ac": "F4JNB2-1", "url": "https://www.uniprot.org/uniprotkb/F4JNB2/entry#F4JNB2-1", "sequence": { "sequence": "MAAASSSCSRRYDVFPSFSGVDVRKTFLSNLLEAFDRRSINTFMDHGIERSRTIAPELISAIREARISIVIFSKNYASSTWCLDELVEIHNRLNDWGQLVISVFYDVDPSEVRKQTGEFGDVFKKTCEDKEEDQKQRWMQALVDITNIAGEDLRNGPSEAAMVVKIANDVSNKLISPSNSFGDFVGIEAHLEAMNSILCLESKEARMVGIWGPSGIGKSTIGKALYSQLFCQFHFHAFVPHVYSMKSEWEEIFLSKILGKDIKIGGKLGVVEQMLNQKKVLIVLDDVDDPEFLKTLVGETKWFGPGSRIIVITQDMQLLKAHDIDLLYEVKFPSLDLALKMLCRSAFGENSPPDDFKALAFEVAVLAGNLPLGLSVLGSSLKRRTKEEWMEMMPRFRNGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLFNGFEVSYVNDLLEDNVGVTMLVEKSLIRITPDGDIEMHNLLEKLGIEIDRAKSKETVLGIRFCTAFRSKELLPIDEKSFQGMRNLQCLSVTGDYMDLPQSLVYLPPKLRLLDWDRCPLKCLPYSFKADYLIQLTMMGSKLEKLWEGTVPLGSLKRMNMHGSRYLREISDLSNARNLEELNLSECRSLVTLSSSIQNAIKLIYLDMRGCTKLESFPTHLNLESLEYLENCIWNKNLPGLDYLACLVRCMPCEFRPNDLVRLIVRGNQMLEKLWEGVQSLASLVEMDMSECGNLTEIPDLSKATNLVNLYLSNCKSLVTVPSTIGNLQKLVRLEMKECTGLEVLPTDVNLSSLKMLDLSGCSSLRTFPLISKSIKWLYLENTAIEEVPCCIENFSWLTVLMMYCCKRLKNISPNIFRLTILKLVDFTECRGVNVAMSDASVEDHSSYIPLYENIEYTRHRFWENLNHKHLACRAGGVSDKWEGVGHKLGQREIMRAKLGSPPRAAGRVTVELEAAGRLSDQLGGYPDGYLGGYGRTGARPKGRVPKTFRGTRTHRKYRKLTIKLSSFRENKSSEEIGSRTVTGKEEEGSDRPNIVKEGKGNLDLESKDSRIR", "length": 1040, "header": "tr|F4JNB2-1|F4JNB2_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN=DL4480C PE=4 SV=1 CANONICAL=F4JNB2-1" }, "locus": { "chromosome": "4", "start_pos": 9511859, "end_pos": 9516602, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G16900.1", "url": "https://www.ensemblgenomes.org/id/AT4G16900.1" }, { "database": "Ensembl Peptide", "id": "AT4G16900.1", "url": "https://www.ensemblgenomes.org/id/AT4G16900.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 494, "end_pos": 494, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JNB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNB2" } ], "site_lbl": "Thr494" }, { "start_pos": 840, "end_pos": 840, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JNB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNB2" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser840" } ], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6Q6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6Q6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "F4JNB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNB2" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6Q6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6Q6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G16900", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G16900", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F4JNB2", "url": "https://www.uniprot.org/uniprotkb/F4JNB2" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F4JNB2", "url": "https://www.uniprot.org/uniprotkb/F4JNB2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "F4JNB2", "url": "https://www.uniprot.org/uniprotkb/F4JNB2" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "F4JNB2", "url": "https://www.uniprot.org/uniprotkb/F4JNB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 610, "end_pos": 612, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 777, "end_pos": 779, "annotation": "n_glycosylation_sequon" }, { "start_pos": 821, "end_pos": 823, "annotation": "n_glycosylation_sequon" }, { "start_pos": 838, "end_pos": 840, "annotation": "n_glycosylation_sequon" }, { "start_pos": 998, "end_pos": 1000, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16301", "name": "", "equation": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23530-2", "O48573-1", "F4HT77-1", "F4I902-1", "F4J339-1", "F4JNA9-1", "F4KHI3-1", "Q0WSX8-1", "Q9XGM3-1", "Q9C5Q9-1", "Q9C7X0-1", "Q9FT77-1", "F4I594-1", "F4JNB7-1", "F4JT80-1", "F4JWM0-1", "F4KHH8-1", "F4KIF3-1", "Q9CAK1-1", "Q9FHF0-1", "Q9SZ66-1", "F4JT78-1", "F4JT82-1", "O49471-1", "O82500-1", "Q9FI14-1", "Q9SCZ2-1", "Q9LUJ8-1", "Q9SYC9-1", "A0A1P8AT27-1", "A0A1P8B6A5-1", "A0A1P8B6H3-1", "Q9SW60-1", "A0A1P8B9V7-1", "Q9FKM9-1", "A0A1P8BDK2-1", "F4KFY1-1", "Q9LFN1-1", "F4I270-1", "F4J359-1", "F4J361-1", "Q9FHE8-1", "Q9FHE9-1", "Q9FKB9-1", "Q9M0Q5-1", "F4IBL4-1", "Q9FH20-1", "Q9FF28-1", "Q9FKE2-1", "Q9FN83-1", 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"UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M285" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9M285", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M285" } ] } ] }, { "uniprot_ac": "Q9M8X8", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9M8X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M8X8" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9M8X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9M8X8" } ] } ] }, { "uniprot_ac": "Q9SCZ2", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9SCZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SCZ2" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9SCZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SCZ2" } ] } ] }, { "uniprot_ac": "Q9SW60", "gene_name": "", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9SW60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW60" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9SW60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SW60" } ] } ] }, { "uniprot_ac": "Q9SYC9", "gene_name": "PVA14", "activity": [ { "ec_number": "3.2.2.6", "activity": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "Q9SYC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYC9" } ] }, { "ec_number": "3.2.2.6", "activity": "", "evidence": [ { "id": "Q9SYC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9SYC9" } ] } ] }, { "uniprot_ac": "Q9SZ66", "gene_name": "DSC1", "activity": [ { 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"url": "https://www.uniprot.org/uniprotkb/Q9ZVX6" } ] } ] } ], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JNB2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1040, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JNB2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JNB2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JNB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNB2" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 174, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "3.2.2.6", "ec_name": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+).", "evidence": [ { "id": "3.2.2.6", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.2.6" }, { "id": "3.2.2.6", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.2.2.6" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 494, 840 ], "sequon_annotation_sites": [ { "start_pos": 610, "end_pos": 612 }, { "start_pos": 721, "end_pos": 723 }, { "start_pos": 777, "end_pos": 779 }, { "start_pos": 821, "end_pos": 823 }, { "start_pos": 838, "end_pos": 840 }, { "start_pos": 998, "end_pos": 1000 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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}, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JG86-1", "uniprot_ac": "F4JG86", "uniprot_id": "F4JG86_ARATH", "mass": { "chemical_mass": 72987.0, "monoisotopic_mass": 72987.0 }, "refseq": { "ac": "NP_192257", "name": "Ankyrin repeat family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192257" }, "gene_names": [ { "name": "F9H3.11", "type": "synonym", "evidence": [ { "id": "NP_192257", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192257" }, { "id": "F4JG86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JG86" } ] }, { "name": "F9H3_11", "type": "synonym", "evidence": [ { "id": "NP_192257", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192257" }, { "id": "F4JG86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JG86" } ] } ], "protein_names": [ { "name": "Ankyrin repeat family protein", "type": "synonym", "evidence": [ { "id": "NP_192257", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192257" }, { "id": "F4JG86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JG86/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JG86", "url": "https://www.uniprot.org/uniprotkb/F4JG86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JG86", "locus": {} } ], "crossref": [ { "id": "F4JG86", "url": "https://alphafold.ebi.ac.uk/entry/F4JG86", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G03480", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G03480", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827906", "url": "https://www.ncbi.nlm.nih.gov/gene/827906", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G03480", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03480", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FETPMAC", "url": "https://omabrowser.org/oma/group/FETPMAC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24186:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24186:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13962", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_192257", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_192257", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G03480", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G03480", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B6T3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6T3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6T3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6T3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JG86", "url": "https://www.uniprot.org/uniprotkb/F4JG86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JG86-1", "url": "https://www.uniprot.org/uniprotkb/F4JG86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRSHLLRATPEASPLKPASSPSNCRLSLSPVELRLYFIRDDDFKVKVDIFKTSYQNSLFELPCCDKSGDHHTHSDLQTKARLDTIQVHRSTVVCLDTESVPEFLTSLRFSDLFNLPGEYVPMNPEIFSAMRAGNIELLEKLKSYETPMACLKSDGGDSVLHLAAASGHLELVKNIITECPCLLLEPNSKYQIPLHVAARAGRSAVVKALVASVLYFSPRVPEEDRDRLNIYVLKDIDGDTPLHAALKDLHEKAEVSHLLRYQERIRKLSLSHLIMHWRRSRCISFSDASTRQMETAACLVNADQHASFLANKDGTSPLYLAVEAGNVSLVRAMLNRPGNKIQGKTSTLASQLEGRKSLLHAALKAKNTDVLNVILNDDPSLVNERDEEGRTCLSVGASMGYYKGICKLLDRSTKSVYECDKDGSFPIHMAVEKGHLKVVKEILKRCPDSKELVNKQGQNMLHIAAKSAKVGSFLLGYIRRLDTENHLIEEQDVDGNAPLHLATINWRCRTVDKLAAFASTETKILNIQNKDGLRPLDIAELNLQPDYVLRERLTLMVLLCVYAPKSVGWLPTSGMTLRSRSEPLDAKKYKDHINALLLVATLVATVTFAAGFTIPGGFNSSAPNMGMATLADDSTLFFFLVLDTLAMQSSIVAIVALI", "length": 659, "header": "tr|F4JG86-1|F4JG86_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JG86-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B6T3-1", "url": "https://www.uniprot.org/uniprotkb/F4JG86/entry#A0A1P8B6T3-1", "sequence": { "sequence": "MVRSHLLRATPEASPLKPASSPSNCRLSLSPVELRLYFIRDDDFKVKVDIFKTSYQNSLFELPCCDKSGDHHTHSDLQTKARLDTIQVHRSTVVCLDTESVPEFLTSLRFSDLFNLPGEYVPMNPEIFSAMRAGNIELLEKLKSYETPMACLKSDGGDSVLHLAAASGHLELVKNIITECPCLLLEPNSKYQIPLHVAARAGRSAVVKALVASVLYFSPRVPEEDRDRLNIYVLKDIDGDTPLHAALKDLHEKAELLRYQERIRKLSLSHLIMHWRRSRCISFSDASTRQMETAACLVNADQHASFLANKDGTSPLYLAVEAGNVSLVRAMLNRPGNKIQGKTSTLASQLEGRKSLLHAALKAKNTDVLNVILNDDPSLVNERDEEGRTCLSVGASMGYYKGICKLLDRSTKSVYECDKDGSFPIHMAVEKGHLKVVKEILKRCPDSKELVNKQGQNMLHIAAKSAKVGSFLLGYIRRLDTENHLIEEQDVDGNAPLHLATINWRCRTVDKLAAFASTETKILNIQNKDGLRPLDIAELNLQPDYVLRERLTLMVLLCVYAPKSVGWLPTSGMTLRSRSEPLDAKKYKDHINALLLVATLVATVTFAAGFTIPGGFNSSAPNMGMATLADDSTLFFFLVLDTLAMQSSIVAIVALI", "length": 656, "header": "tr|A0A1P8B6T3-1|F4JG86_ARATH Computationally mapped isoform of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JG86-1" }, "locus": { "chromosome": "4", "start_pos": 1546024, "end_pos": 1548871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03480.2", "url": "https://www.ensemblgenomes.org/id/AT4G03480.2" }, { "database": "Ensembl Peptide", "id": "AT4G03480.2", "url": "https://www.ensemblgenomes.org/id/AT4G03480.2" } ] } }, { "isoform_ac": "F4JG86-1", "url": "https://www.uniprot.org/uniprotkb/F4JG86/entry#F4JG86-1", "sequence": { "sequence": "MVRSHLLRATPEASPLKPASSPSNCRLSLSPVELRLYFIRDDDFKVKVDIFKTSYQNSLFELPCCDKSGDHHTHSDLQTKARLDTIQVHRSTVVCLDTESVPEFLTSLRFSDLFNLPGEYVPMNPEIFSAMRAGNIELLEKLKSYETPMACLKSDGGDSVLHLAAASGHLELVKNIITECPCLLLEPNSKYQIPLHVAARAGRSAVVKALVASVLYFSPRVPEEDRDRLNIYVLKDIDGDTPLHAALKDLHEKAEVSHLLRYQERIRKLSLSHLIMHWRRSRCISFSDASTRQMETAACLVNADQHASFLANKDGTSPLYLAVEAGNVSLVRAMLNRPGNKIQGKTSTLASQLEGRKSLLHAALKAKNTDVLNVILNDDPSLVNERDEEGRTCLSVGASMGYYKGICKLLDRSTKSVYECDKDGSFPIHMAVEKGHLKVVKEILKRCPDSKELVNKQGQNMLHIAAKSAKVGSFLLGYIRRLDTENHLIEEQDVDGNAPLHLATINWRCRTVDKLAAFASTETKILNIQNKDGLRPLDIAELNLQPDYVLRERLTLMVLLCVYAPKSVGWLPTSGMTLRSRSEPLDAKKYKDHINALLLVATLVATVTFAAGFTIPGGFNSSAPNMGMATLADDSTLFFFLVLDTLAMQSSIVAIVALI", "length": 659, "header": "tr|F4JG86-1|F4JG86_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JG86-1" }, "locus": { "chromosome": "4", "start_pos": 1545470, "end_pos": 1548871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03480.1", "url": "https://www.ensemblgenomes.org/id/AT4G03480.1" }, { "database": "Ensembl Peptide", "id": "AT4G03480.1", "url": "https://www.ensemblgenomes.org/id/AT4G03480.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 14, "end_pos": 14, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JG86", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JG86" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Ser14" }, { "start_pos": 4, "end_pos": 4, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JG86", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JG86" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ], "site_lbl": "Ser4" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6T3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6T3" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Maor Rudy, Jones Alex, N\u00fchse Thomas S, Studholme David J, Peck Scott C, Shirasu Ken", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6T3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6T3" } ], "reference": [ { "type": "PubMed", "id": "17272265", "url": "https://glygen.org/publication/PubMed/17272265" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4JG86", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JG86" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6T3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6T3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G03480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03480", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4JG86", "url": "https://www.uniprot.org/uniprotkb/F4JG86" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JG86", "url": "https://www.uniprot.org/uniprotkb/F4JG86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 620, "end_pos": 622, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JG86-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 659, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JG86-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JG86" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JG86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JG86" }, { "id": "PF13962", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13962" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PGG", "eco_id": "ECO_0000259", "start_pos": 588, "end_pos": 659, "start_aa": "Lys", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 4, 14 ], "sequon_annotation_sites": [ { "start_pos": 327, "end_pos": 329 }, { "start_pos": 620, "end_pos": 622 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JKX0-1", "uniprot_ac": "F4JKX0", "uniprot_id": "F4JKX0_ARATH", "mass": { "chemical_mass": 91787.0, "monoisotopic_mass": 91787.0 }, "refseq": { "ac": "NP_193319", "name": "BTB/POZ domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193319" }, "gene_names": [ { "name": "DL3960W", "type": "recommended", "evidence": [ { "id": "F4JKX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKX0" } ] }, { "name": "DL3960W", "type": "synonym", "evidence": [ { "id": "NP_193319", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193319" } ] }, { "name": "FCAALL.399", "type": "synonym", "evidence": [ { "id": "NP_193319", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193319" }, { "id": "F4JKX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKX0" } ] } ], "protein_names": [ { "name": "BTB/POZ domain-containing protein", "type": "synonym", "evidence": [ { "id": "NP_193319", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193319" }, { "id": "F4JKX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKX0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JKX0", "url": "https://www.uniprot.org/uniprotkb/F4JKX0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL3960W", "url": "https://www.uniprot.org/uniprotkb/F4JKX0", "locus": {} } ], "crossref": [ { "id": "F4JKX0", "url": "https://alphafold.ebi.ac.uk/entry/F4JKX0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G15840", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G15840", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00121", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00121", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "827265", "url": "https://www.ncbi.nlm.nih.gov/gene/827265", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G15840", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15840", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CACKQAH", "url": "https://omabrowser.org/oma/group/CACKQAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47369:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47369:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_193319", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_193319", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G15840", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G15840", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B6W9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6W9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKX0", "url": "https://www.uniprot.org/uniprotkb/F4JKX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKX0-1", "url": "https://www.uniprot.org/uniprotkb/F4JKX0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQEYRNSRTTVTHHQHHHQMRMTVPPPPSPQPSPPVLPHAESDQSTSELRSLDCNLTSLCDHIQSEGFGSGAFSDVVVKAMGSSYHLHRLILSRSSYFRTMLQGPWKEASSPVVNLLVDDKNVNGDAISVALAYLYGYHPKLDDDNAFRVLAAASFLDLQDLCAICTDFIISELRTSNFLAYQVFAESQDYGIHGERVRNACWGYLCQSGAVELREMLPKLSAQTLCALLTSDELWVPSEEKRFELALYAFIANSALSNSDHSNQDSRFERETSFPLDSAISKGKNVMDDFSFRSLDCKLGHLDIEADLRDASDDVIVPLTEGVIDFQRGVSGSNLVFQQSSNSQTNFGRPCTSVVDKTEGSVVAIEGPSEEAYHLSNDSWLSGADSRNSPTLGSSSDGFVVNEWGNCGVSALTWGGRVVGTRQGTGSVKGKYGFTEEEYSAFVNTFEGGSLLYCNMSFEILLNARKELEELGFPCKAVNDGLWLQMLLSQRVQEVAANTCKRCCLISIACACKQGFGVSHGATFNNYYCQENVQNNMMGDMDNVYVPESSQGDGIGIFKPVRISVRGQHIDGLAGIGCEATFVPPPAWPPTPFVYSRVPINRNGQQSIASDGSEGRIDQSGEISKDGLTALVGLSQGTSGVGNNPRGEQTEGGRGSGATVGMSEPKEPSVGTEWENASCTISLDTKTPLCHFPPFRFGVEFEDVHRLANGHVEHSPEFFYAGSLWKISIQAFNDEDPQGRRTIGLFLHRRKAEIVDSVRKVHVYIDPRDKVTARYQLICPSKREVMLFGSFKQRGTLLPKAPKGWGWRTALLFDELSELLQNGALRVAAVVQLV", "length": 836, "header": "tr|F4JKX0-1|F4JKX0_ARATH Isoform 1 of BTB/POZ domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=DL3960W PE=1 SV=1 CANONICAL=F4JKX0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B6W9-1", "url": "https://www.uniprot.org/uniprotkb/F4JKX0/entry#A0A1P8B6W9-1", "sequence": { "sequence": "MDQEYRNSRTTVTHHQHHHQMRMTVPPPPSPQPSPPVLPHAESDQSTSELRSLDCNLTSLCDHIQSEGFGSGAFSDVVVKAMGSSYHLHRLILSRSSYFRTMLQGPWKEASSPVVNLLVDDKNVNGDAISVALAYLYGYHPKLDDDNAFRVLAAASFLDLQDLCAICTDFIISELRTSNFLAYQVFAESQDYGIHGERVRNACWGYLCQSGAVELREMLPKLSAQTLCALLTSDELWVPSEEKRFELALYAFIANSALSNSDHSNQDSRFERETSFPLDSAISKGKNVMDDFSFRSLDCKLGHLDIEADLRDASDDVIVPLTEGVIDFQRGVSGSNLVFQQSSNSQTNFGRPCTSVVDKTEGSVVAIEGPSEEAYHLSNDSWLSGADSRNSPTLGSSSDGFVVNEWGNCGVSALTWGGRVVGTRQGTGSVKGKYGFTEEEYSAFVNTFEGGSLLYCNMSFEILLNARKELEELGFPCKAVNDGLWLQMLLSQRVQEVAANTCKRCCLISIACACKQGFGVSHGATFNNYYCQENVQNNMMGDMDNVYVPESSQGDGIGIFKPVRISVRGQHIDGLAGIGCEATFVPPPAWPPTPFVYSRVPINRNGQQSIASDGSEGRIDQSGEISKDGLTALVGLSQGTSGVGNNPRGEQTEGGRGSGATVGMSEPKEPSVGTEWENASCTISLDTKTPLCHFPPFRFGVEFEDVHRLANGHVEHSPEFFYAGSLWKISIQAFNDEDPQGRRTIGNPS", "length": 749, "header": "tr|A0A1P8B6W9-1|F4JKX0_ARATH Computationally mapped isoform of BTB/POZ domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=DL3960W PE=1 SV=1 CANONICAL=F4JKX0-1" }, "locus": { "chromosome": "4", "start_pos": 8996853, "end_pos": 9001039, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15840.2", "url": "https://www.ensemblgenomes.org/id/AT4G15840.2" }, { "database": "Ensembl Peptide", "id": "AT4G15840.2", "url": "https://www.ensemblgenomes.org/id/AT4G15840.2" } ] } }, { "isoform_ac": "F4JKX0-1", "url": "https://www.uniprot.org/uniprotkb/F4JKX0/entry#F4JKX0-1", "sequence": { "sequence": "MDQEYRNSRTTVTHHQHHHQMRMTVPPPPSPQPSPPVLPHAESDQSTSELRSLDCNLTSLCDHIQSEGFGSGAFSDVVVKAMGSSYHLHRLILSRSSYFRTMLQGPWKEASSPVVNLLVDDKNVNGDAISVALAYLYGYHPKLDDDNAFRVLAAASFLDLQDLCAICTDFIISELRTSNFLAYQVFAESQDYGIHGERVRNACWGYLCQSGAVELREMLPKLSAQTLCALLTSDELWVPSEEKRFELALYAFIANSALSNSDHSNQDSRFERETSFPLDSAISKGKNVMDDFSFRSLDCKLGHLDIEADLRDASDDVIVPLTEGVIDFQRGVSGSNLVFQQSSNSQTNFGRPCTSVVDKTEGSVVAIEGPSEEAYHLSNDSWLSGADSRNSPTLGSSSDGFVVNEWGNCGVSALTWGGRVVGTRQGTGSVKGKYGFTEEEYSAFVNTFEGGSLLYCNMSFEILLNARKELEELGFPCKAVNDGLWLQMLLSQRVQEVAANTCKRCCLISIACACKQGFGVSHGATFNNYYCQENVQNNMMGDMDNVYVPESSQGDGIGIFKPVRISVRGQHIDGLAGIGCEATFVPPPAWPPTPFVYSRVPINRNGQQSIASDGSEGRIDQSGEISKDGLTALVGLSQGTSGVGNNPRGEQTEGGRGSGATVGMSEPKEPSVGTEWENASCTISLDTKTPLCHFPPFRFGVEFEDVHRLANGHVEHSPEFFYAGSLWKISIQAFNDEDPQGRRTIGLFLHRRKAEIVDSVRKVHVYIDPRDKVTARYQLICPSKREVMLFGSFKQRGTLLPKAPKGWGWRTALLFDELSELLQNGALRVAAVVQLV", "length": 836, "header": "tr|F4JKX0-1|F4JKX0_ARATH Isoform 1 of BTB/POZ domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=DL3960W PE=1 SV=1 CANONICAL=F4JKX0-1" }, "locus": { "chromosome": "4", "start_pos": 8996834, "end_pos": 9001039, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15840.1", "url": "https://www.ensemblgenomes.org/id/AT4G15840.1" }, { "database": "Ensembl Peptide", "id": "AT4G15840.1", "url": "https://www.ensemblgenomes.org/id/AT4G15840.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 680, "end_pos": 680, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JKX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKX0" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser680" }, { "start_pos": 682, "end_pos": 682, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JKX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKX0" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr682" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6W9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6W9" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6W9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6W9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "F4JKX0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKX0" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "pathway": [ { "id": "ath:AT4G15840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15840", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F4JKX0", "url": "https://www.uniprot.org/uniprotkb/F4JKX0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ubiquitin ligase complex", "id": "GO:0000151", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000151", "evidence": [ { "database": "UniProtKB", "id": "F4JKX0", "url": "https://www.uniprot.org/uniprotkb/F4JKX0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" }, { "start_pos": 678, "end_pos": 680, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JKX0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 836, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JKX0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JKX0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JKX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKX0" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 75, "end_pos": 145, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 680, 682 ], "sequon_annotation_sites": [ { "start_pos": 379, "end_pos": 381 }, { "start_pos": 457, "end_pos": 459 }, { "start_pos": 56, "end_pos": 58 }, { "start_pos": 678, "end_pos": 680 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { 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"publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JK43-1", "uniprot_ac": "F4JK43", "uniprot_id": "F4JK43_ARATH", "mass": { "chemical_mass": 14690.0, "monoisotopic_mass": 14690.0 }, "refseq": { "ac": "NP_001319950", "name": "glycine-rich protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319950" }, "gene_names": [ { "name": "DL3770C", "type": "recommended", "evidence": [ { "id": "F4JK43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK43" } ] }, { "name": "DL3770C", "type": "synonym", "evidence": [ { "id": "NP_001319950", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319950" } ] }, { "name": "FCAALL.299", "type": "synonym", "evidence": [ { "id": "NP_001319950", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319950" }, { "id": "F4JK43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK43" } ] } ], "protein_names": [ { "name": "Glycine-rich protein", "type": "synonym", "evidence": [ { "id": "F4JK43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JK43/entry#names_and_taxonomy" } ] }, { "name": "glycine-rich protein", "type": "synonym", "evidence": [ { "id": "NP_001319950", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319950" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JK43", "url": "https://www.uniprot.org/uniprotkb/F4JK43" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DL3770C", "url": "https://www.uniprot.org/uniprotkb/F4JK43", "locus": {} } ], "crossref": [ { "id": "F4JK43", "url": "https://alphafold.ebi.ac.uk/entry/F4JK43", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G15460", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G15460", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827217", "url": "https://www.ncbi.nlm.nih.gov/gene/827217", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G15460", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MRITKTR", "url": "https://omabrowser.org/oma/group/MRITKTR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B6X6", "url": "https://www.orthodb.org/?gene=A0A1P8B6X6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B6Y4", "url": "https://www.orthodb.org/?gene=A0A1P8B6Y4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B6Y8", "url": "https://www.orthodb.org/?gene=A0A1P8B6Y8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JK43", "url": "https://www.orthodb.org/?gene=F4JK43", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "NP_001319950", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319950", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G15460", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G15460", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B6X6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6X6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6X6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6Y4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6Y4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B6Y4-1", 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"isoform_ac": "A0A1P8B6X6-1", "url": "https://www.uniprot.org/uniprotkb/F4JK43/entry#A0A1P8B6X6-1", "sequence": { "sequence": "MFDITSMKITKTRAHFVTNYAAKLAVLLIITLLLVNCTTVVAKGGGGGAHGGGGVHVSVGGAHASVGGGHASGGGGHASVGGGHAGGGGGGHGEEEGGHGIGRGGGMVHRPATRNGGSTLTIPFVDGSTTVFMIIFFLFN", "length": 140, "header": "tr|A0A1P8B6X6-1|F4JK43_ARATH Computationally mapped isoform of Glycine-rich protein OS=Arabidopsis thaliana OX=3702 GN=DL3770C PE=4 SV=1 CANONICAL=F4JK43-1" }, "locus": { "chromosome": "4", "start_pos": 8841353, "end_pos": 8842010, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15460.2", "url": "https://www.ensemblgenomes.org/id/AT4G15460.2" }, { "database": "Ensembl Peptide", "id": "AT4G15460.2", "url": "https://www.ensemblgenomes.org/id/AT4G15460.2" } ] } }, { "isoform_ac": "A0A1P8B6Y4-1", "url": "https://www.uniprot.org/uniprotkb/F4JK43/entry#A0A1P8B6Y4-1", "sequence": { "sequence": "MKITKTRAHFVTNYAAKLAVLLIITLLLVNCTTVVAKGGGGGAHGGGGVHVSVGGAHASVGGGHASGGGGHAVEGGGHAGGGGGGHGEEEGGHGIGRGGGMVHRPATRNGGSTLTIPFVDGSTTVFMIIFFLFN", "length": 134, "header": "tr|A0A1P8B6Y4-1|F4JK43_ARATH Computationally mapped isoform of Glycine-rich protein OS=Arabidopsis thaliana OX=3702 GN=DL3770C PE=4 SV=1 CANONICAL=F4JK43-1" }, "locus": { "chromosome": "4", "start_pos": 8841418, "end_pos": 8841866, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15460.4", "url": "https://www.ensemblgenomes.org/id/AT4G15460.4" }, { "database": "Ensembl Peptide", "id": "AT4G15460.4", "url": "https://www.ensemblgenomes.org/id/AT4G15460.4" } ] } }, { "isoform_ac": "A0A1P8B6Y8-1", "url": "https://www.uniprot.org/uniprotkb/F4JK43/entry#A0A1P8B6Y8-1", "sequence": { "sequence": "MFDITSMKITKTRAHFVTNYAAKLAVLLIITLLLVNCTTVVAKGGGGGAHGGGGVHVSVGGAHASVGGGHASGGGGHAVEGGGHAGGGGGGHGEEEGGHGIGRGGGMVHRPATRNGGSTLTIPFVDGSTTVFMIIFFLFN", "length": 140, "header": "tr|A0A1P8B6Y8-1|F4JK43_ARATH Computationally mapped isoform of Glycine-rich protein OS=Arabidopsis thaliana OX=3702 GN=DL3770C PE=4 SV=1 CANONICAL=F4JK43-1" }, "locus": { "chromosome": "4", "start_pos": 8841353, "end_pos": 8842010, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15460.3", "url": "https://www.ensemblgenomes.org/id/AT4G15460.3" }, { "database": "Ensembl Peptide", "id": "AT4G15460.3", "url": "https://www.ensemblgenomes.org/id/AT4G15460.3" } ] } }, { "isoform_ac": "F4JK43-1", "url": "https://www.uniprot.org/uniprotkb/F4JK43/entry#F4JK43-1", "sequence": { "sequence": "MFDITSMKITKTRAHFVTNYAAKLAVLLIITLLLVNCTTVVAKGGGGGAHGGGGVHVSVGGAHASVGGGHASGGGGHASVGGGHASGGGGHAVEGGGHAGGGGGGHGEEEGGHGIGRGGGMVHRPATRNGGSTLTIPFVDGSTTVFMIIFFLFN", "length": 154, "header": "tr|F4JK43-1|F4JK43_ARATH Isoform 1 of Glycine-rich protein OS=Arabidopsis thaliana OX=3702 GN=DL3770C PE=4 SV=1 CANONICAL=F4JK43-1" }, "locus": { "chromosome": "4", "start_pos": 8841414, "end_pos": 8842016, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15460.1", "url": "https://www.ensemblgenomes.org/id/AT4G15460.1" }, { "database": "Ensembl Peptide", "id": "AT4G15460.1", "url": "https://www.ensemblgenomes.org/id/AT4G15460.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6X6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6X6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B6X6", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B6X6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G15460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15460", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular 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Necessary for cells organization in meristems and root elongation zones as well as for root elongation in high salinity, but not upon osmotic stress (PubMed:37676567).", "evidence": [ { "database": "UniProtKB", "id": "F4JP43", "url": "https://www.uniprot.org/uniprotkb/F4JP43#function" }, { "database": "PubMed", "id": "37676567", "url": "https://glygen.org/publication/PubMed/37676567" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JP43", "url": "https://www.uniprot.org/uniprotkb/F4JP43" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "SWO1", "url": "https://www.uniprot.org/uniprotkb/F4JP43", "locus": {} } ], "crossref": [ { "id": "F4JP43", "url": "https://alphafold.ebi.ac.uk/entry/F4JP43", "database": "AlphaFoldDB", 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"KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F4JP43", "url": "https://oglcnac.org/atlas/detail/F4JP43", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "YWKSDQV", "url": "https://omabrowser.org/oma/group/YWKSDQV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48429", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48429", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48429:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48429:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05641", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05641", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PR:F4JP43", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=PR:F4JP43", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_001329269", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001329269", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G17330", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G17330", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B770", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B770", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B770-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B770-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JP43", "url": "https://www.uniprot.org/uniprotkb/F4JP43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JP43-1", "url": "https://www.uniprot.org/uniprotkb/F4JP43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDYDDSDFQNQNLHLAGEANNKFPPVLQPYALPKFDFDDTLNTHLRFDSLGESEAFLGIEGNEDNNWIEDFSRGSSGIVFSSGATESCAISRHNNVWSEATSSESVAMLLNSVGQDEVIVREDTIKKSDTSHELGCTMETVEPGQTSHERSLSKEETVNLQPNPSVDDTPGESSVVKTDDGQEQVLVKDDSPTAVEEASVEEKNSILTSNTATVEAIDTTDLGKIGTETTDNLLDQTEEKANVESRMEDDCSDGNVQTIITCSGELNNQSTLLPETSNDENVISDHIQSSYNRNDLTADARSILVEGHSDSHIDSASEVEKVEAENIGKTAKPDLKEIELSDVTVLERGDQAPSTLEVGGQDVSGTECQDLLVSTVHTSVAVEASLELAGELTTITNSVSIEKPELLSHQHMEVITSEHESTFQIETETYPQIHVFETSESVYISTMDSMVEAREGGVSKKSDNEGSARTSNLEQSMELPVNANDRDQDVKNSQILSESVVSGSVGYVSGGSTSELAESESQSDSIPTDKSETMIDSSLNLEELQPLSQDGAPAVSLTSSIDLHMVKTSSDDSDQGSYSETKKVYGEPENGQTVPPVDASCSGSQMDQEARKRAEGTKQSTYSVEGCPRSEGSKDAVDADGVGQVLQQQSEELIFEENVVTEAVKAPETLSVLDKDNKNEMPITSSLPILGSEAGKDGQEEDNTAASGGIMAAGTPVTHPKGDAIVLGDSRASTCSESSVKSYVTAIEDAATNLKTPLDSFPTVKTSELQFNNTETNSVKKPEDQNISGFMSAGSPVLNRNETSSSEMNLTPDQLKAGKISKAVIFSQATLVSPIVVGSPSTSSLDKTAAKSSKAKSERKPRRTSKSVGKETSRKGTSVKGATPIEQFQSGGKTNAVNQSLASHIQITQSTEKQRSLQSPALKAFGSLSTPTASLPDLNSSALSSILRRPFTDLQQVQLRAQIFVYGALIQGTAPDEAYMISAFGGADGGKGSWEKSWRTCVVRAQKSLVATPETPLQSRPGKTETPSAGHTNSKESSGTNPMIPLSSPLWSLSTSVDTLQSSSVQRGSAATHQPLLSASHAHQTPPTQNIVGHNTPWMSPLPFRNAWLASQQTSGFDVGSRFPVYPITDPVKLTPMKESSMTLSGAKHVQSGTSSNVSKVTPTLEPTSTVVAPAQHSTRVKSRKRKKMPVSVESGPNILNSLKQTELAASPLVPFTPTPANLGYNAGTLPSVVSMTAVPMDLVSTFPGKKIKSSFPSPIFGGNLVREVKQRSVLSEDTIEKLKEAKMHAEDASALATAAVSHSEYVWKQIEQQSHAGLQPETQDRLASAAVAIAAAAAVAKAAAAAANVAANAALQAKLMAEEASLPNASDQGLPKSYDSILPGQGTPASILKGEGAVVNSSSVLIAAREASKKRVEAATAATKRAENMDSIVKAAELASEAVSQAGILVSMGHPPLLNKLVEAGPSNYWRQAQESQEVQPCKTVVLEKETVSTSEGTFAGPKIVQTEFGGSVNTADGVSGPVPATGKLKGQEGDKYADLAKNNDVVFEPEVGSKFSIDAQQTIKATKNEDIKEGSNVEVFKEEPGLRTAWYSANVLSLEDDKAYVLFSDLSVEQGTDKLKEWVALKGEGDQAPKIRPARSVTALPYEGTRKRRRAALGDHIWKIGDRVDSWVHDSWLEGVITEKNKKDENTVTVHFPAEEETLTIKAWNLRPSLVWKDGKWIECSSSGETISSSHEGDTPKEKRPRLGTPALVAEVKDTSMKIVDDPDLGKPPQTGVLNLGVSENTFNIGKSTREENKPDPLRMKRTGLQKQGSKVIFGVPKPGKKRKFMDVSKHYVSEASTKTQERKEPVKPVRSIVPQNSGIGSWKMPSKTISIEKQTTISRPKTFKPAPKPKEKPGATARIIPRKDSRNTTASDMESDESAENRGPGSGVSFKGTVEEQTTSSSHDTGSKNSSSLSTNKGRVAPTAGRLAKIEEDKALAENSSKTSEGMEPRRSIRRIQPTSRLLEGLQTSMMTSKIPSVSHSKSHLSQSKK", "length": 2037, "header": "sp|F4JP43-1|SWO1_ARATH Isoform 1 of Protein SWOLLEN 1 OS=Arabidopsis thaliana OX=3702 GN=SWO1 PE=1 SV=1 CANONICAL=F4JP43-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B770-1", "url": "https://www.uniprot.org/uniprotkb/F4JP43/entry#A0A1P8B770-1", "sequence": { "sequence": "MDYDDSDFQNQNLHLAGEANNKFPPVLQPYALPKFDFDDTLNTHLRFDSLGESEAFLGIEGNEDNNWIEDFSRGSSGIVFSSGATESCAISRHNNVWSEATSSESVAMLLNSVGQDEVIVREDTIKKSDTSHELGCTMETVEPGQTSHERSLSKEETVNLQPNPSVDDTPGESSVVKTDDGQEQVLVKDDSPTAVEEASVEEKNSILTSNTATVEAIDTTDLGKIGTETTDNLLDQTEEKANVESRMEDDCSDGNVQTIITCSDARSILVEGHSDSHIDSASEVEKVEAENIGKTAKPDLKEIELSDVTVLERGDQAPSTLEVGGQDVSGTECQDLLVSTVHTSVAVEASLELAGELTTITNSVSIEKPELLSHQHMEVITSEHESTFQIETETYPQIHVFETSESVYISTMDSMVEAREGGVSKKSDNEGSARTSNLEQSMELPVNANDRDQDVKNSQILSESVVSGSVGYVSGGSTSELAESESQSDSIPTDKSETMIDSSLNLEELQPLSQDGAPAVSLTSSIDLHMVKTSSDDSDQGSYSETKKVYGEPENGQTVPPVDASCSGSQMDQEARKRAEGTKQSTYSVEGCPRSEGSKDAVDADGVGQVLQQQSEELIFEENVVTEAVKAPETLSVLDKDNKNEMPITSSLPILGSEAGKDGQEEDNTAASGGIMAAGTPVTHPKGDAIVLGDSRASTCSESSVKSYVTAIEDAATNLKTPLDSFPTVKTSELQFNNTETNSVKKPEDQNISGFMSAGSPVLNRNETSSSEMNLTPDQLKAGKISKAVIFSQATLVSPIVVGSPSTSSLDKTAAKSSKAKSERKPRRTSKSVGKETSRKGTSVKGATPIEQFQSGGKTNAVNQSLASHIQITQSTEKQRSLQSPALKAFGSLSTPTASLPDLNSSALSSILRRPFTDLQQVQLRAQIFVYGALIQGTAPDEAYMISAFGGADGGKGSWEKSWRTCVVRAQKSLVATPETPLQSRPGKTETPSAGHTNSKESSGTNPMIPLSSPLWSLSTSVDTLQSSSVQRGSAATHQPLLSASHAHQTPPTQNIVGHNTPWMSPLPFRNAWLASQQTSGFDVGSRFPVYPITDPVKLTPMKESSMTLSGAKHVQSGTSSNVSKVTPTLEPTSTVVAPAQHSTRVKSRKRKKMPVSVESGPNILNSLKQTELAASPLVPFTPTPANLGYNAGTLPSVVSMTAVPMDLVSTFPGKKIKSSFPSPIFGGNLVREVKQRSVLSEDTIEKLKEAKMHAEDASALATAAVSHSEYVWKQIEQQSHAGLQPETQDRLASAAVAIAAAAAVAKAAAAAANVAANAALQAKLMAEEASLPNASDQGLPKSYDSILPGQGTPASILKGEGAVVNSSSVLIAAREASKKRVEAATAATKRAENMDSIVKAAELASEAVSQAGILVSMGHPPLLNKLVEAGPSNYWRQAQESQEVQPCKTVVLEKETVSTSEGTFAGPKIVQTEFGGSVNTADGVSGPVPATGKLKGQEGDKYADLAKNNDVVFEPEVGSKFSIDAQQTIKATKNEDIKEGSNVEVFKEEPGLRTAWYSANVLSLEDDKAYVLFSDLSVEQGTDKLKEWVALKGEGDQAPKIRPARSVTALPYEGTRKRRRAALGDHIWKIGDRVDSWVHDSWLEGVITEKNKKDENTVTVHFPAEEETLTIKAWNLRPSLVWKDGKWIECSSSGETISSSHEGDTPKEKRPRLGTPALVAEVKDTSMKIVDDPDLGKPPQTGVLNLGVSENTFNIGKSTREENKPDPLRMKRTGLQKQGSKVIFGVPKPGKKRKFMDVSKHYVSEASTKTQERKEPVKPVRSIVPQNSGIGSWKMPSKTISIEKQTTISRPKTFKPAPKPKEKPGATARIIPRKDSRNTTASDMESDESAENRGPGSGVSFKGTVEEQTTSSSHDTGSKNSSSLSTNKGRVAPTAGRLAKIEEDKALAENSSKTSEGMEPRRSIRRIQPTSRLLEGLQTSMMTSKIPSVSHSKSHLSQSKK", "length": 2002, "header": "tr|A0A1P8B770-1|SWO1_ARATH Computationally mapped isoform of Protein SWOLLEN 1 OS=Arabidopsis thaliana OX=3702 GN=SWO1 PE=1 SV=1 CANONICAL=F4JP43-1" }, "locus": { "chromosome": "4", "start_pos": 9688888, "end_pos": 9697578, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G17330.3", "url": "https://www.ensemblgenomes.org/id/AT4G17330.3" }, { "database": "Ensembl Peptide", "id": "AT4G17330.3", "url": "https://www.ensemblgenomes.org/id/AT4G17330.3" } ] } }, { "isoform_ac": "F4JP43-1", "url": "https://www.uniprot.org/uniprotkb/F4JP43/entry#F4JP43-1", "sequence": { "sequence": "MDYDDSDFQNQNLHLAGEANNKFPPVLQPYALPKFDFDDTLNTHLRFDSLGESEAFLGIEGNEDNNWIEDFSRGSSGIVFSSGATESCAISRHNNVWSEATSSESVAMLLNSVGQDEVIVREDTIKKSDTSHELGCTMETVEPGQTSHERSLSKEETVNLQPNPSVDDTPGESSVVKTDDGQEQVLVKDDSPTAVEEASVEEKNSILTSNTATVEAIDTTDLGKIGTETTDNLLDQTEEKANVESRMEDDCSDGNVQTIITCSGELNNQSTLLPETSNDENVISDHIQSSYNRNDLTADARSILVEGHSDSHIDSASEVEKVEAENIGKTAKPDLKEIELSDVTVLERGDQAPSTLEVGGQDVSGTECQDLLVSTVHTSVAVEASLELAGELTTITNSVSIEKPELLSHQHMEVITSEHESTFQIETETYPQIHVFETSESVYISTMDSMVEAREGGVSKKSDNEGSARTSNLEQSMELPVNANDRDQDVKNSQILSESVVSGSVGYVSGGSTSELAESESQSDSIPTDKSETMIDSSLNLEELQPLSQDGAPAVSLTSSIDLHMVKTSSDDSDQGSYSETKKVYGEPENGQTVPPVDASCSGSQMDQEARKRAEGTKQSTYSVEGCPRSEGSKDAVDADGVGQVLQQQSEELIFEENVVTEAVKAPETLSVLDKDNKNEMPITSSLPILGSEAGKDGQEEDNTAASGGIMAAGTPVTHPKGDAIVLGDSRASTCSESSVKSYVTAIEDAATNLKTPLDSFPTVKTSELQFNNTETNSVKKPEDQNISGFMSAGSPVLNRNETSSSEMNLTPDQLKAGKISKAVIFSQATLVSPIVVGSPSTSSLDKTAAKSSKAKSERKPRRTSKSVGKETSRKGTSVKGATPIEQFQSGGKTNAVNQSLASHIQITQSTEKQRSLQSPALKAFGSLSTPTASLPDLNSSALSSILRRPFTDLQQVQLRAQIFVYGALIQGTAPDEAYMISAFGGADGGKGSWEKSWRTCVVRAQKSLVATPETPLQSRPGKTETPSAGHTNSKESSGTNPMIPLSSPLWSLSTSVDTLQSSSVQRGSAATHQPLLSASHAHQTPPTQNIVGHNTPWMSPLPFRNAWLASQQTSGFDVGSRFPVYPITDPVKLTPMKESSMTLSGAKHVQSGTSSNVSKVTPTLEPTSTVVAPAQHSTRVKSRKRKKMPVSVESGPNILNSLKQTELAASPLVPFTPTPANLGYNAGTLPSVVSMTAVPMDLVSTFPGKKIKSSFPSPIFGGNLVREVKQRSVLSEDTIEKLKEAKMHAEDASALATAAVSHSEYVWKQIEQQSHAGLQPETQDRLASAAVAIAAAAAVAKAAAAAANVAANAALQAKLMAEEASLPNASDQGLPKSYDSILPGQGTPASILKGEGAVVNSSSVLIAAREASKKRVEAATAATKRAENMDSIVKAAELASEAVSQAGILVSMGHPPLLNKLVEAGPSNYWRQAQESQEVQPCKTVVLEKETVSTSEGTFAGPKIVQTEFGGSVNTADGVSGPVPATGKLKGQEGDKYADLAKNNDVVFEPEVGSKFSIDAQQTIKATKNEDIKEGSNVEVFKEEPGLRTAWYSANVLSLEDDKAYVLFSDLSVEQGTDKLKEWVALKGEGDQAPKIRPARSVTALPYEGTRKRRRAALGDHIWKIGDRVDSWVHDSWLEGVITEKNKKDENTVTVHFPAEEETLTIKAWNLRPSLVWKDGKWIECSSSGETISSSHEGDTPKEKRPRLGTPALVAEVKDTSMKIVDDPDLGKPPQTGVLNLGVSENTFNIGKSTREENKPDPLRMKRTGLQKQGSKVIFGVPKPGKKRKFMDVSKHYVSEASTKTQERKEPVKPVRSIVPQNSGIGSWKMPSKTISIEKQTTISRPKTFKPAPKPKEKPGATARIIPRKDSRNTTASDMESDESAENRGPGSGVSFKGTVEEQTTSSSHDTGSKNSSSLSTNKGRVAPTAGRLAKIEEDKALAENSSKTSEGMEPRRSIRRIQPTSRLLEGLQTSMMTSKIPSVSHSKSHLSQSKK", "length": 2037, "header": "sp|F4JP43-1|SWO1_ARATH Isoform 1 of Protein SWOLLEN 1 OS=Arabidopsis thaliana OX=3702 GN=SWO1 PE=1 SV=1 CANONICAL=F4JP43-1" }, "locus": { "chromosome": "4", "start_pos": 9688851, "end_pos": 9697706, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G17330.1", "url": "https://www.ensemblgenomes.org/id/AT4G17330.1" }, { "database": "Ensembl Peptide", "id": "AT4G17330.1", "url": "https://www.ensemblgenomes.org/id/AT4G17330.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1008, "start_aa": "Ser", "end_pos": 1008, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser1008", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1012, "start_aa": "Thr", "end_pos": 1012, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1012", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1015, "start_aa": "Thr", "end_pos": 1015, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1015", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1019, "start_aa": "Ser", "end_pos": 1019, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser1019", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1024, "start_aa": "Thr", "end_pos": 1024, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1024", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1026, "start_aa": "Thr", "end_pos": 1026, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1026", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1028, "start_aa": "Ser", "end_pos": 1028, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser1028", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1032, "start_aa": "Thr", "end_pos": 1032, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1032", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1152, "start_aa": "Ser", "end_pos": 1152, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser1152", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 1154, "start_aa": "Thr", "end_pos": 1154, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1154", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JP43", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JP43" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { 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"827193", "url": "https://www.ncbi.nlm.nih.gov/gene/827193", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR050481", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050481", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G15270", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15270", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR48048", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48048", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48048:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48048:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001319947", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319947", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G15270", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G15270", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B780", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B780", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B780-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B780-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JJG0", "url": "https://www.uniprot.org/uniprotkb/F4JJG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JJG0-1", "url": "https://www.uniprot.org/uniprotkb/F4JJG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIQLVFIPSPGIGHLRSTVELAKRLVRSDDRLWITVIIIPYPSISDDDVETTYIASLTTASQDRLNYEAISVANQPTDYQEPTQVYIEKQKPQVRDVVARIFHSTGVDSPRVAGFVVDMFCSSMIDVVNEFGVPCYMVYTSNATCLGITLHIQRMFDEKKYDVSELEDSVNELEFPFLTRPYPVKCLPDFFTSKDWLAFFLAQARCFRKMKEDKRLCDGGGVGIGGSDTEVL", "length": 233, "header": "tr|F4JJG0-1|F4JJG0_ARATH Isoform 1 of Glucosyltransferase-like protein OS=Arabidopsis thaliana OX=3702 GN=DL3680C PE=3 SV=1 CANONICAL=F4JJG0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B780-1", "url": "https://www.uniprot.org/uniprotkb/F4JJG0/entry#A0A1P8B780-1", "sequence": { "sequence": "MKIQLVFIPSPGIGHLRSTVELAKRLVRSDDRLWITVIIIPYPSISDDDVETTYIASLTTASQDRLNYEAISVANQPTDYQEPTQVYIEKQKPQVRDVVARIFHSTGVDSPRVAGFVVDMFCSSMIDVVNEFGVPCYMVYTSNATCLGITLHIQRMFDEKKYDVSELEDSVNELEFPFLTRPYPVKCLPDFFTSKDCGDVAALRRAEDKRLCDGGGVGIGGSDTEVL", "length": 227, "header": "tr|A0A1P8B780-1|F4JJG0_ARATH Computationally mapped isoform of Glucosyltransferase-like protein OS=Arabidopsis thaliana OX=3702 GN=DL3680C PE=3 SV=1 CANONICAL=F4JJG0-1" }, "locus": { "chromosome": "4", "start_pos": 8716504, "end_pos": 8717833, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15270.2", "url": "https://www.ensemblgenomes.org/id/AT4G15270.2" }, { "database": "Ensembl Peptide", "id": "AT4G15270.2", "url": "https://www.ensemblgenomes.org/id/AT4G15270.2" } ] } }, { "isoform_ac": "F4JJG0-1", "url": "https://www.uniprot.org/uniprotkb/F4JJG0/entry#F4JJG0-1", "sequence": { "sequence": "MKIQLVFIPSPGIGHLRSTVELAKRLVRSDDRLWITVIIIPYPSISDDDVETTYIASLTTASQDRLNYEAISVANQPTDYQEPTQVYIEKQKPQVRDVVARIFHSTGVDSPRVAGFVVDMFCSSMIDVVNEFGVPCYMVYTSNATCLGITLHIQRMFDEKKYDVSELEDSVNELEFPFLTRPYPVKCLPDFFTSKDWLAFFLAQARCFRKMKEDKRLCDGGGVGIGGSDTEVL", "length": 233, "header": "tr|F4JJG0-1|F4JJG0_ARATH Isoform 1 of Glucosyltransferase-like protein OS=Arabidopsis thaliana OX=3702 GN=DL3680C PE=3 SV=1 CANONICAL=F4JJG0-1" }, "locus": { "chromosome": "4", "start_pos": 8716580, "end_pos": 8717844, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G15270.1", "url": "https://www.ensemblgenomes.org/id/AT4G15270.1" }, { "database": "Ensembl Peptide", "id": "AT4G15270.1", "url": "https://www.ensemblgenomes.org/id/AT4G15270.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B780", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B780" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B780", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B780" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G15270", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15270", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "UDP-glucosyltransferase activity", "id": "GO:0035251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035251", "evidence": [ { "database": "UniProtKB", "id": "F4JJG0", "url": "https://www.uniprot.org/uniprotkb/F4JJG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JJG0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 233, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JJG0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JJG0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 } ] }, "class_list": [], "section_stats": [ { "table_id": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JI50-1", "uniprot_ac": "F4JI50", "uniprot_id": "F4JI50_ARATH", "mass": { "chemical_mass": 33898.0, "monoisotopic_mass": 33898.0 }, "refseq": { "ac": "NP_680566", "name": "Mitochondrial substrate carrier family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680566" }, "gene_names": [], "protein_names": [ { "name": "Mitochondrial substrate carrier family protein", "type": "synonym", "evidence": [ { "id": "NP_680566", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680566" }, { "id": "F4JI50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JI50/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JI50", "url": "https://www.uniprot.org/uniprotkb/F4JI50" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JI50", "locus": {} } ], "crossref": [ { "id": "F4JI50", "url": "https://alphafold.ebi.ac.uk/entry/F4JI50", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G03115", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G03115", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828074", "url": "https://www.ncbi.nlm.nih.gov/gene/828074", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050391", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050391", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G03115", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03115", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LIPCWLR", "url": "https://omabrowser.org/oma/group/LIPCWLR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45618", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45618", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00153", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00153", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_680566", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680566", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G03115", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G03115", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B797", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B797", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B797-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B797-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7A0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7A0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7A0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7A1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7A1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7A1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7B9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7B9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JI50", "url": "https://www.uniprot.org/uniprotkb/F4JI50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JI50-1", "url": "https://www.uniprot.org/uniprotkb/F4JI50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIGDISPPVTSIPVVEGNEELRKPQNLIPPFSKVVSHFGISGISVALATGVTHPLDVVKVRLQMQHVGQRGPLIGMTGIFLQLMKNEGRRSLYLGLTPALTRSVLYGGLRLGLYEPTKVSFDWAFGSTNVLVKIASGAFAGAFSTALTNPVEVVKVRLQMNPNAVPIAEVREIVSKEGIGALWKGVGPAMVRAAALTASQLATYDEAKRILVKRTSLEEGFHLHLCSSVVAGLVSTLITAPMDMIKTRLMLQQGSESTKTYRNGFHCGYKVVRKEGPLALYKGGFAIFARLGPQTMITFILCEKLRSLAGLHTM", "length": 314, "header": "tr|F4JI50-1|F4JI50_ARATH Isoform 1 of Mitochondrial substrate carrier family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI50-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B797-1", "url": "https://www.uniprot.org/uniprotkb/F4JI50/entry#A0A1P8B797-1", "sequence": { "sequence": "MIGDISPPVTSIPVVEGNEELRKPQNLIPPFSKVVSHFGISGISVALATGVTHPLDVVKVRLQMQHVGQRGPLIGMTGIFLQLMKNEGRRSLYLGLTPALTRSVLYGGLRLGLYEPTKVSFDWAFGSTNVLVKIASGAFAGAFSTALTNPVEVVKVRLQMNPNAVPIAEVREIVSKEGIGALWKGVGPAMVRAAALTASQLATYDEAKRILVKRTSLEEGFHLHLW", "length": 226, "header": "tr|A0A1P8B797-1|F4JI50_ARATH Computationally mapped isoform of Mitochondrial substrate carrier family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI50-1" }, "locus": { "chromosome": "4", "start_pos": 1382438, "end_pos": 1385525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03115.2", "url": "https://www.ensemblgenomes.org/id/AT4G03115.2" }, { "database": "Ensembl Peptide", "id": "AT4G03115.2", "url": "https://www.ensemblgenomes.org/id/AT4G03115.2" } ] } }, { "isoform_ac": "A0A1P8B7A0-1", "url": "https://www.uniprot.org/uniprotkb/F4JI50/entry#A0A1P8B7A0-1", "sequence": { "sequence": "MIGDISPPVTSIPGSSDLFALCICLNFNPKIIESFDLLSHKLKHEVVEGNEELRKPQNLIPPFSKVVSHFGISGISVALATGVTHPLDVVKVRLQMQHVGQRGPLIGMTGIFLQLMKNEGRRSLYLGLTPALTRSVLYGGLRLGLYEPTKVSFDWAFGSTNVLVKIASGAFAGAFSTALTNPVEVVKVRLQMNPNAVPIAEVREIVSKEGIGALWKGVGPAMVRAAALTASQLATYDEAKRILVKRTSLEEGFHLHLCSSVVAGLVSTLITAPMDMIKTRLMLQQGSESTKTYRNGFHCGYKVVRKEGPLALYKGGFAIFARLGPQTMITFILCEKLRSLAGLHTM", "length": 346, "header": "tr|A0A1P8B7A0-1|F4JI50_ARATH Computationally mapped isoform of Mitochondrial substrate carrier family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI50-1" }, "locus": { "chromosome": "4", "start_pos": 1382438, "end_pos": 1385497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03115.3", "url": "https://www.ensemblgenomes.org/id/AT4G03115.3" }, { "database": "Ensembl Peptide", "id": "AT4G03115.3", "url": "https://www.ensemblgenomes.org/id/AT4G03115.3" } ] } }, { "isoform_ac": "A0A1P8B7A1-1", "url": "https://www.uniprot.org/uniprotkb/F4JI50/entry#A0A1P8B7A1-1", "sequence": { "sequence": "MIGDISPPVTSIPVVEGNEELRKPQNLIPPFSKVVSHFGISGISVALATGVTHPLDVVKVRLQMQHVGQRGPLIGMTGIFLQLMKNEGRRSLYLGLTPALTRSVLYGGLRLGLYEPTKVSFDWAFGSTNVLVKIASGAFAGAFSTALTNPVEVVKVRLQMNPNAVPIAEVREIVSKEGIGALWKGVGPAMVRAAALTASQLATYDEAKRILVKRTSLEEGFHLHLCT", "length": 227, "header": "tr|A0A1P8B7A1-1|F4JI50_ARATH Computationally mapped isoform of Mitochondrial substrate carrier family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI50-1" }, "locus": { "chromosome": "4", "start_pos": 1382438, "end_pos": 1385525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03115.4", "url": "https://www.ensemblgenomes.org/id/AT4G03115.4" }, { "database": "Ensembl Peptide", "id": "AT4G03115.4", "url": "https://www.ensemblgenomes.org/id/AT4G03115.4" } ] } }, { "isoform_ac": "A0A1P8B7B9-1", "url": "https://www.uniprot.org/uniprotkb/F4JI50/entry#A0A1P8B7B9-1", "sequence": { "sequence": "MQHVGQRGPLIGMTGIFLQLMKNEGRRSLYLGLTPALTRSVLYGGLRLGLYEPTKVSFDWAFGSTNVLVKIASGAFAGAFSTALTNPVEVVKVRLQMNPNAVPIAEVREIVSKEGIGALWKGVGPAMVRAAALTASQLATYDEAKRILVKRTSLEEGFHLHLCSSVVAGLVSTLITAPMDMIKTRLMLQQGSESTKTYRNGFHCGYKVVRKEGPLALYKGGFAIFARLGPQTMITFILCEKLRSLAGLHTM", "length": 251, "header": "tr|A0A1P8B7B9-1|F4JI50_ARATH Computationally mapped isoform of Mitochondrial substrate carrier family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI50-1" }, "locus": { "chromosome": "4", "start_pos": 1382438, "end_pos": 1385059, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03115.6", "url": "https://www.ensemblgenomes.org/id/AT4G03115.6" }, { "database": "Ensembl Peptide", "id": "AT4G03115.6", "url": "https://www.ensemblgenomes.org/id/AT4G03115.6" } ] } }, { "isoform_ac": "F4JI50-1", "url": "https://www.uniprot.org/uniprotkb/F4JI50/entry#F4JI50-1", "sequence": { "sequence": "MIGDISPPVTSIPVVEGNEELRKPQNLIPPFSKVVSHFGISGISVALATGVTHPLDVVKVRLQMQHVGQRGPLIGMTGIFLQLMKNEGRRSLYLGLTPALTRSVLYGGLRLGLYEPTKVSFDWAFGSTNVLVKIASGAFAGAFSTALTNPVEVVKVRLQMNPNAVPIAEVREIVSKEGIGALWKGVGPAMVRAAALTASQLATYDEAKRILVKRTSLEEGFHLHLCSSVVAGLVSTLITAPMDMIKTRLMLQQGSESTKTYRNGFHCGYKVVRKEGPLALYKGGFAIFARLGPQTMITFILCEKLRSLAGLHTM", "length": 314, "header": "tr|F4JI50-1|F4JI50_ARATH Isoform 1 of Mitochondrial substrate carrier family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JI50-1" }, "locus": { "chromosome": "4", "start_pos": 1382438, "end_pos": 1385525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G03115.1", "url": "https://www.ensemblgenomes.org/id/AT4G03115.1" }, { "database": "Ensembl Peptide", "id": "AT4G03115.1", "url": "https://www.ensemblgenomes.org/id/AT4G03115.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B797", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B797" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B797", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B797" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G03115", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03115", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9VMK1-1", "protein_name": "Mitochondrial uncoupling protein 4C", "gene_name": "Ucp4C", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDKAERDYWHLRSLEIEEEPRFPPTNVADPLTARNLFQLYVNTFIGANLAESCVFPLDVAKTRMQVDGEQAKKTGKAMPTFRATLTNMIRVEGFKSLYAGFSAMVTRNFIFNSLRVVLYDVFRRPFLYQNERNEEVLKIYMALGCSFTAGCIAQALANPFDIVKVRMQTEGRRRQLGYDVRVNSMVQAFVDIYRRGGLPSMWKGVGPSCMRACLMTTGDVGSYDISKRTFKRLLDLEEGLPLRFVSSMCAGLTASVLSTPADVIKSRMMNQPVDESGKNLYYKNSLDCVRKLVREEGVLTLYKGLMPTWFRLGPFSVLFWLSVEQLRQWEGQSGF", "length": 335 }, "evidence": [ { "id": "F4JI50", "url": "https://omabrowser.org/oma/group/F4JI50/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4JI50", "url": "https://www.uniprot.org/uniprotkb/F4JI50" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F4JI50", "url": "https://www.uniprot.org/uniprotkb/F4JI50" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JI50", "url": "https://www.uniprot.org/uniprotkb/F4JI50" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JI50", "url": "https://www.uniprot.org/uniprotkb/F4JI50" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F4JI50", "url": "https://www.uniprot.org/uniprotkb/F4JI50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"mass": { "chemical_mass": 96334.0, "monoisotopic_mass": 96334.0 }, "refseq": {}, "gene_names": [ { "name": "T16L4.260", "type": "synonym", "evidence": [ { "id": "F4JNR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNR2" } ] }, { "name": "T16L4_260", "type": "synonym", "evidence": [ { "id": "F4JNR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNR2" } ] } ], "protein_names": [ { "name": "CRS1 / YhbY (CRM) domain-containing protein", "type": "synonym", "evidence": [ { "id": "F4JNR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JNR2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JNR2", "url": "https://www.uniprot.org/uniprotkb/F4JNR2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JNR2", "locus": {} } ], "crossref": [ { "id": "F4JNR2", "url": "https://alphafold.ebi.ac.uk/entry/F4JNR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G29750", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G29750", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829097", "url": "https://www.ncbi.nlm.nih.gov/gene/829097", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G29750", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G29750", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VEHDFQK", "url": "https://omabrowser.org/oma/group/VEHDFQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1P8B7L2", "url": "https://www.orthodb.org/?gene=A0A1P8B7L2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JNR2", "url": "https://www.orthodb.org/?gene=F4JNR2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31846", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31846", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31846:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31846:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01985", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01985", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G29750", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G29750", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B7L2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7L2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNR2", "url": "https://www.uniprot.org/uniprotkb/F4JNR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JNR2-1", "url": "https://www.uniprot.org/uniprotkb/F4JNR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALCQFPLNLHTISSSTSSSPRFRRLQPLDTSTKPNFLIRRLRFHSFNHPVRFHTRELSVITATIDIDTHQRKKTKRKPKPGFFEEISDKWSSRISPKTEKLPWQKQEEQIQHHEDEEDEEGDESSSNLSSGNGLSDKRTDSNRLYSANEPWSFPRPSGYMSAPWVNNGGSKGVNFTTSSEQGIQSSSFHDVTTVDRYRRDNDSSDRAVDSDLDDGERGMIDSGNNKGIWRTRKSNTVEAERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSSVVLYRGISYKLKCVQTFIKQNNLEANPEIHRSVEARDYVQEDGNYPKNVPKEQLSELCELNDLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQAKEDQAREMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKRAALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTGQDDDMETRNKSDEEEENLYLRVDESDFSSDEDESLEWESEKNETFLSSEGKEEEEA", "length": 841, "header": "tr|F4JNR2-1|F4JNR2_ARATH Isoform 1 of CRS1 / YhbY (CRM) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNR2-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B7L2-1", "url": "https://www.uniprot.org/uniprotkb/F4JNR2/entry#A0A1P8B7L2-1", "sequence": { "sequence": "MALCQFPLNLHTISSSTSSSPRFRRLQPLDTSTKPNFLIRRLRFHSFNHPVRFHTRELSVITATIDIDTHQRKKTKRKPKPGFFEEISDKWSSRISPKTEKLPWQKQEEQIQHHEDEEDEEGDESSSNLSSGNGLSDKRTDSNRLYSANEPWSFPRPSGYMSAPWVNNGGSKGVNFTTSSEQGIQSSSFHDVTTVDRYRRDNDSSDRAVDSDLDDGERGMIDSGNNKGIWRTRKSNTVEAERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSSVVLYRGISYKLKCVQTFIKQNNLEANPEIHRSVEARDYVQEDGNYPKNVPKEQLSELCELNDLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQAKEDQAREMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKRAALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTGQDDDMETRNKSDEEEENLYLRVDESDFSSDEVK", "length": 818, "header": "tr|A0A1P8B7L2-1|F4JNR2_ARATH Computationally mapped isoform of CRS1 / YhbY (CRM) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNR2-1" }, "locus": { "chromosome": "4", "start_pos": 14569728, "end_pos": 14573177, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G29750.2", "url": "https://www.ensemblgenomes.org/id/AT4G29750.2" }, { "database": "Ensembl Peptide", "id": "AT4G29750.2", "url": "https://www.ensemblgenomes.org/id/AT4G29750.2" } ] } }, { "isoform_ac": "F4JNR2-1", "url": "https://www.uniprot.org/uniprotkb/F4JNR2/entry#F4JNR2-1", "sequence": { "sequence": "MALCQFPLNLHTISSSTSSSPRFRRLQPLDTSTKPNFLIRRLRFHSFNHPVRFHTRELSVITATIDIDTHQRKKTKRKPKPGFFEEISDKWSSRISPKTEKLPWQKQEEQIQHHEDEEDEEGDESSSNLSSGNGLSDKRTDSNRLYSANEPWSFPRPSGYMSAPWVNNGGSKGVNFTTSSEQGIQSSSFHDVTTVDRYRRDNDSSDRAVDSDLDDGERGMIDSGNNKGIWRTRKSNTVEAERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSSVVLYRGISYKLKCVQTFIKQNNLEANPEIHRSVEARDYVQEDGNYPKNVPKEQLSELCELNDLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQAKEDQAREMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKRAALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTGQDDDMETRNKSDEEEENLYLRVDESDFSSDEDESLEWESEKNETFLSSEGKEEEEA", "length": 841, "header": "tr|F4JNR2-1|F4JNR2_ARATH Isoform 1 of CRS1 / YhbY (CRM) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JNR2-1" }, "locus": { "chromosome": "4", "start_pos": 14569665, "end_pos": 14573177, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G29750.1", "url": "https://www.ensemblgenomes.org/id/AT4G29750.1" }, { "database": "Ensembl Peptide", "id": "AT4G29750.1", "url": "https://www.ensemblgenomes.org/id/AT4G29750.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 211, "end_pos": 211, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNR2" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser211" }, { "start_pos": 59, "end_pos": 59, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "iPTMnet", "id": "F4JNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNR2" } ], "site_lbl": "Ser59" }, { "start_pos": 62, "end_pos": 62, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "iPTMnet", "id": "F4JNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNR2" } ], "site_lbl": "Thr62" }, { "start_pos": 699, "end_pos": 699, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" }, { "database": "iPTMnet", "id": "F4JNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNR2" } ], "site_lbl": "Ser699" }, { "start_pos": 69, "end_pos": 69, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "iPTMnet", "id": "F4JNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNR2" } ], "site_lbl": "Thr69" }, { "start_pos": 714, "end_pos": 714, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" }, { "database": "iPTMnet", "id": "F4JNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNR2" } ], "site_lbl": "Ser714" }, { "start_pos": 720, "end_pos": 720, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" }, { "database": "iPTMnet", "id": "F4JNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNR2" } ], "site_lbl": "Ser720" }, { "start_pos": 796, "end_pos": 796, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNR2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser796" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B7L2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7L2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B7L2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7L2" }, { "database": "iPTMnet", "id": "F4JNR2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JNR2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JNR2", "url": 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Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "A0A1P8B7L2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1P8B7L2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKK9", "url": "https://www.uniprot.org/uniprotkb/F4JKK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKK9-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKL0", "url": "https://www.uniprot.org/uniprotkb/F4JKL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKL0-1", "url": "https://www.uniprot.org/uniprotkb/F4JKL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPDDDKELQEPKEEDSYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDESSVNPPGDIVTYEPSEDDLGRKCAFSQAENVENGCEVSLSNPGETPSESTGCPNDQEPEHRQRPSSWVEDTLIELYLDGYNQHPSASSYERASGENNQDCQMLSANGDDDAEELEEGEWIPEEDFDPQEENFGEAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEQKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEERSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 530, "header": "tr|F4JKK8-1|F4JKK8_ARATH Isoform 1 of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B7W7-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#A0A1P8B7W7-1", "sequence": { "sequence": "MLIRILYCIRWNEFALQVWNLRREATNCVCSPGDDDAEELEEGEWIPEEDFDPQEENFAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEEQRSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 389, "header": "tr|A0A1P8B7W7-1|F4JKK8_ARATH Computationally mapped isoform of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350738, "end_pos": 16354269, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.9", "url": "https://www.ensemblgenomes.org/id/AT4G34140.9" }, { "database": "Ensembl Peptide", "id": "AT4G34140.9", "url": "https://www.ensemblgenomes.org/id/AT4G34140.9" } ] } }, { "isoform_ac": "A0A1P8B7X0-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#A0A1P8B7X0-1", "sequence": { "sequence": "MLIRILYCIRWNEFALQVWNLRREATNCVCSPGDDDAEELEEGEWIPEEDFDPQEENFGEAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEERSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 390, "header": "tr|A0A1P8B7X0-1|F4JKK8_ARATH Computationally mapped isoform of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350462, "end_pos": 16354434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.4", "url": "https://www.ensemblgenomes.org/id/AT4G34140.4" }, { "database": "Ensembl Peptide", "id": "AT4G34140.4", "url": "https://www.ensemblgenomes.org/id/AT4G34140.4" } ] } }, { "isoform_ac": "A0A1P8B7X2-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#A0A1P8B7X2-1", "sequence": { "sequence": "MLSANGDDDAEELEEGEWIPEEDFDPQEENFGEAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEERSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 363, "header": "tr|A0A1P8B7X2-1|F4JKK8_ARATH Computationally mapped isoform of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350462, "end_pos": 16354434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.5", "url": "https://www.ensemblgenomes.org/id/AT4G34140.5" }, { "database": "Ensembl Peptide", "id": "AT4G34140.5", "url": "https://www.ensemblgenomes.org/id/AT4G34140.5" } ] } }, { "isoform_ac": "A0A1P8B7X3-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#A0A1P8B7X3-1", "sequence": { "sequence": "MPDDDKELQEPKEEDSYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDESSVNPPGDIVTYEPSEDDLGRKCAFSQAENVENGCEVSLSNPGETPSESTGCPNDQEPEHRQRPSSWVEDTLIELYLDGYNQHPSASSYERASGENNQDCQMLSANGDDDAEELEEGEWIPEEDFDPQEENFGEAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEEVLGPHLHGWILVFYVSECL", "length": 440, "header": "tr|A0A1P8B7X3-1|F4JKK8_ARATH Computationally mapped isoform of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350738, "end_pos": 16354269, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.10", "url": "https://www.ensemblgenomes.org/id/AT4G34140.10" }, { "database": "Ensembl Peptide", "id": "AT4G34140.10", "url": "https://www.ensemblgenomes.org/id/AT4G34140.10" } ] } }, { "isoform_ac": "A0A1P8B7X5-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#A0A1P8B7X5-1", "sequence": { "sequence": "MLSANGDDDAEELEEGEWIPEEDFDPQEENFGEAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEEQRSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 364, "header": "tr|A0A1P8B7X5-1|F4JKK8_ARATH Computationally mapped isoform of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350476, "end_pos": 16354388, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.8", "url": "https://www.ensemblgenomes.org/id/AT4G34140.8" }, { "database": "Ensembl Peptide", "id": "AT4G34140.8", "url": "https://www.ensemblgenomes.org/id/AT4G34140.8" } ] } }, { "isoform_ac": "A0A1P8B7Y7-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#A0A1P8B7Y7-1", "sequence": { "sequence": "MMCFLRLIFIAFMLTVSFLAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEEQRSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 350, "header": "tr|A0A1P8B7Y7-1|F4JKK8_ARATH Computationally mapped isoform of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350476, "end_pos": 16354388, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.6", "url": "https://www.ensemblgenomes.org/id/AT4G34140.6" }, { "database": "Ensembl Peptide", "id": "AT4G34140.6", "url": "https://www.ensemblgenomes.org/id/AT4G34140.6" } ] } }, { "isoform_ac": "A0A1P8B7Z1-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#A0A1P8B7Z1-1", "sequence": { "sequence": "MLIRILYCIRWNEFALQVWNLRREATNCVCSPGDDDAEELEEGEWIPEEDFDPQEENFGEAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEEQRSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 391, "header": "tr|A0A1P8B7Z1-1|F4JKK8_ARATH Computationally mapped isoform of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350476, "end_pos": 16354388, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.7", "url": "https://www.ensemblgenomes.org/id/AT4G34140.7" }, { "database": "Ensembl Peptide", "id": "AT4G34140.7", "url": "https://www.ensemblgenomes.org/id/AT4G34140.7" } ] } }, { "isoform_ac": "F4JKK8-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#F4JKK8-1", "sequence": { "sequence": "MPDDDKELQEPKEEDSYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDESSVNPPGDIVTYEPSEDDLGRKCAFSQAENVENGCEVSLSNPGETPSESTGCPNDQEPEHRQRPSSWVEDTLIELYLDGYNQHPSASSYERASGENNQDCQMLSANGDDDAEELEEGEWIPEEDFDPQEENFGEAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEQKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEERSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 530, "header": "tr|F4JKK8-1|F4JKK8_ARATH Isoform 1 of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350780, "end_pos": 16354241, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.2", "url": "https://www.ensemblgenomes.org/id/AT4G34140.2" }, { "database": "Ensembl Peptide", "id": "AT4G34140.2", "url": "https://www.ensemblgenomes.org/id/AT4G34140.2" } ] } }, { "isoform_ac": "F4JKK9-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#F4JKK9-1", "sequence": { "sequence": "MPDDDKELQEPKEEDSYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDESSVNPPGDIVTYEPSEDDLGRKCAFSQAENVENGCEVSLSNPGETPSESTGCPNDQEPEHRQRPSSWVEDTLIELYLDGYNQHPSASSYERASGENNQDCQMLSANGDDDAEELEEGEWIPEEDFDPQEENFGEAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEEQRSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 530, "header": "tr|F4JKK9-1|F4JKK9_ARATH Computationally mapped isoform of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350476, "end_pos": 16354302, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.1", "url": "https://www.ensemblgenomes.org/id/AT4G34140.1" }, { "database": "Ensembl Peptide", "id": "AT4G34140.1", "url": "https://www.ensemblgenomes.org/id/AT4G34140.1" } ] } }, { "isoform_ac": "F4JKL0-1", "url": "https://www.uniprot.org/uniprotkb/F4JKK8/entry#F4JKL0-1", "sequence": { "sequence": "MPDDDKELQEPKEEDSYVWDSDTQLYIHHSSGFYHDPNAGWYYCSKDGRYYKHENGEYVPLEYDESSVNPPGDIVTYEPSEDDLGRKCAFSQAENVENGCEVSLSNPGETPSESTGCPNDQEPEHRQRPSSWVEDTLIELYLDGYNQHPSASSYERASGENNQDCQMLSANGDDDAEELEEGEWIPEEDFDPQEENFGEAAPSSEEERWLAQYGQVIESPGKTLPEIPSVDLWDWKLVCETREADNEQVARLVGRLVRQSANLHPSVVSGGTLLKTAPICEARLHLVRVRTGQVYKLRNPSAKYLASLSVYDASNPTKDWEFPDISTEWQNPDTKRKAKKGKPKRASKLTVKPSEVDMIEEKTKRKAKKVKPKADCKLTVKPCEVDMFEEQETKREAKKVKPKTDCKLTVKPRDEVNMIEERSCSYRDRAAERRNLHGGYGVGPGQKGTTVDHNTDEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPIQAVGNTGNVGLGFPQRRRK", "length": 529, "header": "tr|F4JKL0-1|F4JKL0_ARATH Computationally mapped isoform of D111/G-patch domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4JKK8-1" }, "locus": { "chromosome": "4", "start_pos": 16350462, "end_pos": 16354434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34140.3", "url": "https://www.ensemblgenomes.org/id/AT4G34140.3" }, { "database": "Ensembl Peptide", "id": "AT4G34140.3", "url": "https://www.ensemblgenomes.org/id/AT4G34140.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 304, "end_pos": 304, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JKK8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKK8" }, { "database": "iPTMnet", "id": "F4JKK9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKK9" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Tyr304" }, { "start_pos": 317, "end_pos": 317, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JKK8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKK8" }, { "database": "iPTMnet", "id": "F4JKK9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKK9" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr317" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B7W7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7W7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4JKK9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JKK9" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B7W7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7W7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G34140", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G34140", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F4JKK8", "url": "https://www.uniprot.org/uniprotkb/F4JKK8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JKK8", "url": "https://www.uniprot.org/uniprotkb/F4JKK8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F4JKK8", "url": "https://www.uniprot.org/uniprotkb/F4JKK8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JKK8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 530, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JKK8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JKK8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JKK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKK8" }, { "id": "PS50174", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50174" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-patch", "eco_id": "ECO_0000259", "start_pos": 481, "end_pos": 527, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 304, 317 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JP86-1", "uniprot_ac": "F4JP86", "uniprot_id": "F4JP86_ARATH", "mass": { "chemical_mass": 205252.0, "monoisotopic_mass": 205252.0 }, "refseq": { "ac": "NP_001319976", "name": "tRNA/rRNA methyltransferase (SpoU) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319976" }, "gene_names": [ { "name": "TRM3", "type": "recommended", "evidence": [ { "id": "F4JP86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ] }, { "name": "DL4840C", "type": "synonym", "evidence": [ { "id": "NP_001319976", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319976" }, { "id": "F4JP86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ] }, { "name": "FCAALL.71", "type": "synonym", "evidence": [ { "id": "NP_001319976", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319976" }, { "id": "F4JP86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ] } ], "protein_names": [ { "name": "tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1", "type": "recommended", "evidence": [ { "id": "F4JP86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP86/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.34", "type": "synonym", "evidence": [ { "id": "F4JP86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP86/entry#names_and_taxonomy" } ] }, { "name": "TAR RNA-binding protein 1", "type": "synonym", "evidence": [ { "id": "F4JP86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP86/entry#names_and_taxonomy" } ] }, { "name": "tRNA/rRNA methyltransferase (SpoU) family protein", "type": "synonym", "evidence": [ { "id": "NP_001319976", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319976" } ] } ], "function": [ { "annotation": "S-adenosyl-L-methionine-dependent 2'-O-ribose methyltransferase that catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in a subset of tRNA. Selectively mediates Gm18 methylation of tRNAGln-TTG/CTG and tRNASer-TGA/GCT. Gm18 modification can enhance the stability of modified tRNAs.", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B7Z4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7Z4#function" }, { "database": "UniProtKB", "id": "ARBA00093361", "url": "https://www.uniprot.org/uniprotkb/ARBA00093361#function" }, { "database": "UniProtKB", "id": "A0A1P8B800", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B800#function" }, { "database": "UniProtKB", "id": "F4JP86", "url": "https://www.uniprot.org/uniprotkb/F4JP86#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JP86", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "TRM3", "url": "https://www.uniprot.org/uniprotkb/F4JP86", "locus": { "chromosome": "CP002684.1", "start_pos": 6414569, "end_pos": 6409655, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "AT1G18620", "url": "https://www.ensemblgenomes.org/id/AT1G18620" } ] } } ], "crossref": [ { "id": "F4JP86", "url": "https://alphafold.ebi.ac.uk/entry/F4JP86", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G17610", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G17610", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd18091", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18091", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "827480", "url": "https://www.ncbi.nlm.nih.gov/gene/827480", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001537", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001537", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029026", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029026", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G17610", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G17610", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GQEMAKC", "url": "https://omabrowser.org/oma/group/GQEMAKC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12029", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12029", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12029:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12029:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00588", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00588", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001319976", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319976", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "20077", "url": "https://www.rhea-db.org/rhea/20077", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "AT4G17610", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G17610", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B7Z4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7Z4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B7Z4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7Z4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B800", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B800", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B800-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B800-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JP86", "url": "https://www.uniprot.org/uniprotkb/F4JP86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JP86-1", "url": "https://www.uniprot.org/uniprotkb/F4JP86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSSVITSLSLSFKQVPPAAIPAFLDCVLSSTGVSPSTLFESLIEQFPFRLEDTVNGDKRFDSDDCNHIASLVAGLCHLLKNFGFVAADNHNALQLFVWRVFIPLMKMVRAYDLDMLNKIVESFFDVVIETNVLDMLGVSLVPFLLRSVGFSMGMRQHEESDFIKWGDLCLRDSLNTIDMDENYIAQLSGSFPIPLSCHLLNLILNAAFQSHQAAPKVESFAAGMLWDLCNTTERLLSQSVEHRSCAVSFLLPAIFKAFSSQSSLKISHQGNLFILSRNGFIKRIWECCKKLFSVGSIERRDAYSVLSLCLSSGSWTDGTESFVSEKDAVQFDLRSEQEFWDEIKIGLVVDESLVRKQSLHILKSVLSIIEVSETISEKKPEGNSVNRSMTRKETWAEKEAKSLGVGELYGSVDSGLTSQQGWQAFLLLYEMLEEYGTHLVEAAWSNQIDLLIKSSLRYDGTLKSDCNNSHHGHMETPDEEAKIFNWLEVLWNRGFRHDNPLVRCTVMESFFGIEWRRYKTCTQSMSQTFVLGPFIEGLNDPTHHKDFGLKGIYTSRTIEGAAQYVSAYTSCLNPRNRVGFLINLASLAKKQSFCRAGFMALVQCIVSTAYVVGGYGDKEMGHLEDKFSGTAQESSCGHLSQDDMTHILDVLKFVAESSRQHFNHKYRIRVYQKVLETAASVVNPCNVPLGTLLQFVSAIPREFTDHDGLLRKMMLEWLQGCNRKTSNSLCTDGTRLLASLYEYLKGFTSDNVESFDDEDLEAWDSQTKRWARVFFLMINKEEHLTDIIMFVQNNGLSFFQEKNHLKRAPAKFLIFILSMLLELQNMQDGISELSSSVKSKSGIGSDEQTGKQIVVDASSIKKKFAVVLLSILKELIPFADSSCSIFWSHTTVENGALPGSVIGKLGGPSQRRLSVPTTTAVLEAVLSVKTIGLISSYCAQFTSGVGELKLALAFFWKFTQHTISSQICNSEAAAEIYLAAFEALASVLNAFVSLCSAGAFNLLENDSTLLSMVDGEFWLQVSVPAFVRNINHLLTAGVLVRSRRAVLLSWKWLCVESLLSVMHILDARRIPEDRKSFFSDDTVKSIFQDIVESLENAGEGSALPMLKSVRLALGILASGKSSLDGFSGVDTQTMWQLVKSCWILHISCKKRRVAPIAALLSSVLHSSLFSNKDMHITEDEHGPLKWFVEKVLEEGQKSPRTIRLAALHLSGLWLMYPRTIKYYIKELRLLTLYGSVAFDEDFEAELSDNNDARTEVSLLAKSPDPELTELFINTELYARVSVAGLFQKLANLAYMVEPASQNQDCQDALVAGKLFLLELLDAAVHDKDLAKELYKKYSAIHRRKIRAWQMICIMSRFVCNDIVGQVMDSVHICLHVSLQEQTERNNLPAVRQYLETFAINIYLKFPALVKEQLVPILKNYDSKAQQALSSYVFVAANVILHAEKIAQQTHLRELLPPILPLLTSHHHSLRGFAQLLVHRVLFRLFPPVESTSSHTISLEKLSFENLKSYLDKNPDCSRLRASMEGFLDAYDPSTSATPAGVFVNRVEESEFECVPTCLMDNVLSFLNDVREDLRASMAKDVVTIKNEGFKIDEEPKRRLIMSTTDEERLSEPSSLDFQRKITLSKHEKQDASSTSVLRNGETYKRLFEMEKEDELVTQLLRSRSMEVERLKSGRQSLILVASLVDRIPNLAGLARTCEVFKASSLAVADASIIHDKQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRI", "length": 1828, "header": "tr|F4JP86-1|F4JP86_ARATH Isoform 1 of tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Arabidopsis thaliana OX=3702 GN=TRM3 PE=1 SV=2 CANONICAL=F4JP86-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B7Z4-1", "url": "https://www.uniprot.org/uniprotkb/F4JP86/entry#A0A1P8B7Z4-1", "sequence": { "sequence": "MGSSVITSLSLSFKQVPPAAIPAFLDCVLSSTGVSPSTLFESLIEQFPFRLEDTVNGDKRFDSDDCNHIASLVAGLCHLLKNFGFVAADNHNALQLFVWRVFIPLMKMVRAYDLDMLNKIVESFFDVVIETNVLDMLGVSLVPFLLRSVGFSMGMRQHEESDFIKWGDLCLRDSLNTIDMDENYIAQLSGSFPIPLSCHLLNLILNAAFQSHQAAPKVESFAAGMLWDLCNTTERLLSQSVEHRSCAVSFLLPAIFKAFSSQSSLKISHQGNLFILSRNGFIKRIWECCKKLFSVGSIERRDAYSVLSLCLSSGSWTDGTESFVSEKDAVQFDLRSEQEFWDEIKIGLVVDESLVRKQSLHILKSVLSIIEVSETISEKKPEGNSVNRSMTRKETWAEKEAKSLGVGELYGSVDSGLTSQQGWQAFLLLYEMLEEYGTHLVEAAWSNQIDLLIKSSLRYDGTLKSDCNNSHHGHMETPDEEAKIFNWLEVLWNRGFRHDNPLVRCTVMESFFGIEWRRYKTCTQSMSQTFVLGPFIEGLNDPTHHKDFGLKGIYTSRTIEGAAQYVSAYTSCLNPRNRVGFLINLASLAKKQSFCRAGFMALVQCIVSTAYVVGGYGDKEMGHLEDKFSGTAQESSCGHLSQDDMTHILDVLKFVAESSRQHFNHKYRIRVYQKVLETAASVVNPCNVPLGTLLQFVSAIPREFTDHDGLLRKMMLEWLQGCNRKTSNSLCTDGTRLLASLYEYLKGFTSDNVESFDDEDLEAWDSQTKRWARVFFLMINKEEHLTDIIMFVQNNGLSFFQEKNHLKRAPAKFLIFILSMLLELQNMQDGISELSSSVKSKSGIGSDEQTGKQIVVDASSIKKKFAVVLLSILKELIPFADSSCSIFWSHTTVENGALPGSVIGKLGGPSQRRLSVPTTTAVLEAVLSVKTIGLISSYCAQFTSGVGELKLALAFFWKFTQHTISSQICNSEAAAEIYLAAFEALASVLNAFVSLCSAGAFNLLENDSTLLSMVDGEFWLQVSVPAFVRNINHLLTAGVLVRSRRAVLLSWKWLCVESLLSVMHILDARRIPEDRKSFFSDDTVKSIFQDIVESLENAGEGSALPMLKSVRLALGILASGKSSLDGFSGVDTQTMWQLVKSCWILHISCKKRRVAPIAALLSSVLHSSLFSNKDMHITEDEHGPLKWFVEKVLEEGQKSPRTIRLAALHLSGLWLMYPRTIKYYIKELRLLTLYGSVAFDEDFEAELSDNNDARTEVSLLAKSPDPELTELFINTELYARVSVAGLFQKLANLAYMVEPASQNQDCQDALVAGKLFLLELLDAAVHDKDLAKELYKKYSAIHRRKIRAWQMICIMSRFVCNDIVGQVMDSVHICLHRNNLPAVRQYLETFAINIYLKFPALVKEQLVPILKNYDSKAQQALSSYVFVAANVILHAEKIAQQTHLRELLPPILPLLTSHHHSLRGFAQLLVHRVLFRLFPPVESTSSHTISLEKLSFENLKSYLDKNPDCSRLRASMEGFLDAYDPSTSATPAGVFVNRVEESEFECVPTCLMDNVLSFLNDVREDLRASMAKDVVTIKNEGFKIDEEPKRRLIMSTTDEERLSEPSSLDFQRKITLSKHEKQDASSTSVLRNGETYKRLFEMEKEDELVTQLLRSRSMEVERLKSGRQSLILVASLVDRIPNLAGLARTCEVFKASSLAVADASIIHDKQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRI", "length": 1820, "header": "tr|A0A1P8B7Z4-1|F4JP86_ARATH Computationally mapped isoform of tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Arabidopsis thaliana OX=3702 GN=TRM3 PE=1 SV=1 CANONICAL=F4JP86-1" }, "locus": { "chromosome": "4", "start_pos": 9804954, "end_pos": 9815062, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G17610.2", "url": "https://www.ensemblgenomes.org/id/AT4G17610.2" }, { "database": "Ensembl Peptide", "id": "AT4G17610.2", "url": "https://www.ensemblgenomes.org/id/AT4G17610.2" } ] } }, { "isoform_ac": "A0A1P8B800-1", "url": "https://www.uniprot.org/uniprotkb/F4JP86/entry#A0A1P8B800-1", "sequence": { "sequence": "MGSSVITSLSLSFKQVPPAAIPAFLDCVLSSTGVSPSTLFESLIEQFPFRLEDTVNGDKRFDSDDCNHIASLVAGLCHLLKNFAGFVAADNHNALQLFVWRVFIPLMKMVRAYDLDMLNKIVESFFDVVIETNVLDMLGVSLVPFLLRSVGFSMGMRQHEESDFIKWGDLCLRDSLNTIDMDENYIAQLSGSFPIPLSCHLLNLILNAAFQSHQAAPKVESFAAGMLWDLCNTTERLLSQSVEHRSCAVSFLLPAIFKAFSSQSSLKISHQGNLFILSRNGFIKRIWECCKKLFSVGSIERRDAYSVLSLCLSSGSWTDGTESFVSEKDAVQFDLRSEQEFWDEIKIGLVVDESLVRKQSLHILKSVLSIIEVSETISEKKPEGNSVNRSMTRKETWAEKEAKSLGVGELYGSVDSGLTSQQGWQAFLLLYEMLEEYGTHLVEAAWSNQIDLLIKSSLRYDGTLKSDCNNSHHGHMETPDEEAKIFNWLEVLWNRGFRHDNPLVRCTVMESFFGIEWRRYKTCTQSMSQTFVLGPFIEGLNDPTHHKDFGLKGIYTSRTIEGAAQYVSAYTSCLNPRNRVGFLINLASLAKKQSFCRAGFMALVQCIVSTAYVVGGYGDKEMGHLEDKFSGTAQESSCGHLSQDDMTHILDVLKFVAESSRQHFNHKYRIRVYQKVLETAASVVNPCNVPLGTLLQFVSAIPREFTDHDGLLRKMMLEWLQGCNRKTSNSLCTDGTRLLASLYEYLKGFTSDNVESFDDEDLEAWDSQTKRWARVFFLMINKEEHLTDIIMFVQNNGLSFFQEKNHLKRAPAKFLIFILSMLLELQNMQDGISELSSSVKSKSGIGSDEQTGKQIVVDASSIKKKFAVVLLSILKELIPFADSSCSIFWSHTTVENGALPGSVIGKLGGPSQRRLSVPTTTAVLEAVLSVKTIGLISSYCAQFTSGVGELKLALAFFWKFTQHTISSQICNSEAAAEIYLAAFEALASVLNAFVSLCSAGAFNLLENDSTLLSMVDGEFWLQVSVPAFVRNINHLLTAGVLVRSRRAVLLSWKWLCVESLLSVMHILDARRIPEDRKSFFSDDTVKSIFQDIVESLENAGEGSALPMLKSVRLALGILASGKSSLDGFSGVDTQTMWQLVKSCWILHISCKKRRVAPIAALLSSVLHSSLFSNKDMHITEDEHGPLKWFVEKVLEEGQKSPRTIRLAALHLSGLWLMYPRTIKYYIKELRLLTLYGSVAFDEDFEAELSDNNDARTEVSLLAKSPDPELTELFINTELYARVSVAGLFQKLANLAYMVEPASQNQDCQDALVAGKLFLLELLDAAVHDKDLAKELYKKYSAIHRRKIRAWQMICIMSRFVCNDIVGQVMDSVHICLHRNNLPAVRQYLETFAINIYLKFPALVKEQLVPILKNYDSKAQQALSSYVFVAANVILHAEKIAQQTHLRELLPPILPLLTSHHHSLRGFAQLLVHRVLFRLFPPVESTSSHTISLEKLSFENLKSYLDKNPDCSRLRASMEGFLDAYDPSTSATPAGVFVNRVEESEFECVPTCLMDNVLSFLNDVREDLRASMAKDVVTIKNEGFKIDEEPKRRLIMSTTDEERLSEPSSLDFQRKITLSKHEKQDASSTSVLRNGETYKRLFEMEKEDELVTQLLRSRSMEVERLKSGRQSLILVASLVDRIPNLAGLARTCEVFKASSLAVADASIIHDKQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRI", "length": 1821, "header": "tr|A0A1P8B800-1|F4JP86_ARATH Computationally mapped isoform of tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Arabidopsis thaliana OX=3702 GN=TRM3 PE=1 SV=1 CANONICAL=F4JP86-1" }, "locus": { "chromosome": "4", "start_pos": 9805477, "end_pos": 9815043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G17610.3", "url": "https://www.ensemblgenomes.org/id/AT4G17610.3" }, { "database": "Ensembl Peptide", "id": "AT4G17610.3", "url": "https://www.ensemblgenomes.org/id/AT4G17610.3" } ] } }, { "isoform_ac": "F4JP86-1", "url": "https://www.uniprot.org/uniprotkb/F4JP86/entry#F4JP86-1", "sequence": { "sequence": "MGSSVITSLSLSFKQVPPAAIPAFLDCVLSSTGVSPSTLFESLIEQFPFRLEDTVNGDKRFDSDDCNHIASLVAGLCHLLKNFGFVAADNHNALQLFVWRVFIPLMKMVRAYDLDMLNKIVESFFDVVIETNVLDMLGVSLVPFLLRSVGFSMGMRQHEESDFIKWGDLCLRDSLNTIDMDENYIAQLSGSFPIPLSCHLLNLILNAAFQSHQAAPKVESFAAGMLWDLCNTTERLLSQSVEHRSCAVSFLLPAIFKAFSSQSSLKISHQGNLFILSRNGFIKRIWECCKKLFSVGSIERRDAYSVLSLCLSSGSWTDGTESFVSEKDAVQFDLRSEQEFWDEIKIGLVVDESLVRKQSLHILKSVLSIIEVSETISEKKPEGNSVNRSMTRKETWAEKEAKSLGVGELYGSVDSGLTSQQGWQAFLLLYEMLEEYGTHLVEAAWSNQIDLLIKSSLRYDGTLKSDCNNSHHGHMETPDEEAKIFNWLEVLWNRGFRHDNPLVRCTVMESFFGIEWRRYKTCTQSMSQTFVLGPFIEGLNDPTHHKDFGLKGIYTSRTIEGAAQYVSAYTSCLNPRNRVGFLINLASLAKKQSFCRAGFMALVQCIVSTAYVVGGYGDKEMGHLEDKFSGTAQESSCGHLSQDDMTHILDVLKFVAESSRQHFNHKYRIRVYQKVLETAASVVNPCNVPLGTLLQFVSAIPREFTDHDGLLRKMMLEWLQGCNRKTSNSLCTDGTRLLASLYEYLKGFTSDNVESFDDEDLEAWDSQTKRWARVFFLMINKEEHLTDIIMFVQNNGLSFFQEKNHLKRAPAKFLIFILSMLLELQNMQDGISELSSSVKSKSGIGSDEQTGKQIVVDASSIKKKFAVVLLSILKELIPFADSSCSIFWSHTTVENGALPGSVIGKLGGPSQRRLSVPTTTAVLEAVLSVKTIGLISSYCAQFTSGVGELKLALAFFWKFTQHTISSQICNSEAAAEIYLAAFEALASVLNAFVSLCSAGAFNLLENDSTLLSMVDGEFWLQVSVPAFVRNINHLLTAGVLVRSRRAVLLSWKWLCVESLLSVMHILDARRIPEDRKSFFSDDTVKSIFQDIVESLENAGEGSALPMLKSVRLALGILASGKSSLDGFSGVDTQTMWQLVKSCWILHISCKKRRVAPIAALLSSVLHSSLFSNKDMHITEDEHGPLKWFVEKVLEEGQKSPRTIRLAALHLSGLWLMYPRTIKYYIKELRLLTLYGSVAFDEDFEAELSDNNDARTEVSLLAKSPDPELTELFINTELYARVSVAGLFQKLANLAYMVEPASQNQDCQDALVAGKLFLLELLDAAVHDKDLAKELYKKYSAIHRRKIRAWQMICIMSRFVCNDIVGQVMDSVHICLHVSLQEQTERNNLPAVRQYLETFAINIYLKFPALVKEQLVPILKNYDSKAQQALSSYVFVAANVILHAEKIAQQTHLRELLPPILPLLTSHHHSLRGFAQLLVHRVLFRLFPPVESTSSHTISLEKLSFENLKSYLDKNPDCSRLRASMEGFLDAYDPSTSATPAGVFVNRVEESEFECVPTCLMDNVLSFLNDVREDLRASMAKDVVTIKNEGFKIDEEPKRRLIMSTTDEERLSEPSSLDFQRKITLSKHEKQDASSTSVLRNGETYKRLFEMEKEDELVTQLLRSRSMEVERLKSGRQSLILVASLVDRIPNLAGLARTCEVFKASSLAVADASIIHDKQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRI", "length": 1828, "header": "tr|F4JP86-1|F4JP86_ARATH Isoform 1 of tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Arabidopsis thaliana OX=3702 GN=TRM3 PE=1 SV=2 CANONICAL=F4JP86-1" }, "locus": { "chromosome": "4", "start_pos": 9805495, "end_pos": 9814910, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G17610.1", "url": "https://www.ensemblgenomes.org/id/AT4G17610.1" }, { "database": "Ensembl Peptide", "id": "AT4G17610.1", "url": "https://www.ensemblgenomes.org/id/AT4G17610.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1538, "start_aa": "Thr", "end_pos": 1538, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1538", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme", "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B7Z4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7Z4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B7Z4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B7Z4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G17610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G17610", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F4JP86", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ], "pmid": "" }, { "name": "tRNA (guanine(18)-2'-O)-methyltransferase activity", "id": "GO:0141100", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141100", "evidence": [ { "database": "UniProtKB", "id": "F4JP86", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ], "pmid": "" }, { "name": "tRNA (guanine) methyltransferase activity", "id": "GO:0016423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016423", "evidence": [ { "database": "UniProtKB", "id": "F4JP86", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "tRNA methylation", "id": "GO:0030488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030488", "evidence": [ { "database": "UniProtKB", "id": "F4JP86", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JP86", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1006, "end_pos": 1008, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 468, "end_pos": 470, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20077", "name": "", "equation": "guanosine(18) in tRNA + S-adenosyl-L-methionine = 2'-O-methylguanosine(18) in tRNA + S-adenosyl-L-homocysteine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "F4JP86-1" ], "evidence": [ { "id": "20077", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20077" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "F4JP86", "gene_name": "TRM3", "activity": [ { "ec_number": "2.1.1.34", "activity": "guanosine(18) in tRNA + S-adenosyl-L-methionine = 2'-O-methylguanosine(18) in tRNA + S-adenosyl-L-homocysteine + H(+).", "evidence": [ { "id": "F4JP86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ] }, { "ec_number": "2.1.1.34", "activity": "", "evidence": [ { "id": "F4JP86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JP86" } ] } ] } ], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JP86-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1828, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JP86-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JP86" } ], 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"MARLRNTLCLVAALLLINQKTATSDFLSPLFAPVYDNICKEVECGKGKCKAPSNTTFMYECECEDGWKQFDQHLKFLPCITPNCTFDLTCGEAASPAQPKPPPKDNITSFFDPCQWMDCGGGLCNSSMPFQYSCNCREGYSNLMNITTFPCLKQCALGMDCLNLGIPLSNSSSSSPPALPDSSKNQGLNLRGSSLWWITLCVSLAPWRILFI", "length": 212, "header": "tr|F4JIF2-1|F4JIF2_ARATH Isoform 1 of Neurogenic locus notch-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JIF2-1" }, "locus": { "chromosome": "4", "start_pos": 8462437, "end_pos": 8464485, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G14746.1", "url": "https://www.ensemblgenomes.org/id/AT4G14746.1" }, { "database": "Ensembl Peptide", "id": "AT4G14746.1", "url": "https://www.ensemblgenomes.org/id/AT4G14746.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, 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"https://www.uniprot.org/uniprotkb/F4JM51/entry#A0A1P8B8I4-1", "sequence": { "sequence": "MSGLGMVNAGVTTQLLVSLFRLKGVLHYGIAGNADVNLEIGDVTIPQYWAHSGLWNWQRYGDGIDNELALESGGDYTREVGYLQFSKYSNRTDNLLNRVWYQPEEIFPVTGTPEERQHVFWIPVDKSYLKLARKLEDTKLPQCVNTTCLPRPPKVTIVKRGMSASVFIDNAAYRTFLNSKFNATAVEMESAAVALISHQQNLPFIVIRALSDLAGGGSDVSNEASIFSSLAAENSVDILVKFVALLPPHESKIQSE", "length": 256, "header": "tr|A0A1P8B8I4-1|F4JM51_ARATH Computationally mapped isoform of Phosphorylase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JM51-1" }, "locus": { "chromosome": "4", "start_pos": 14274909, "end_pos": 14277095, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G28940.2", "url": "https://www.ensemblgenomes.org/id/AT4G28940.2" }, { "database": "Ensembl Peptide", "id": "AT4G28940.2", "url": "https://www.ensemblgenomes.org/id/AT4G28940.2" } ] } }, { "isoform_ac": "F4JM51-1", "url": "https://www.uniprot.org/uniprotkb/F4JM51/entry#F4JM51-1", "sequence": { "sequence": "MGHFLIGFLVVVLSVGNVIEEANGEIPRTTLEKIERMNQKGPYLGIVAPNNYELNPLLGSKAYFPSSSLPFIDFAGRKFRFGKLSNQPVIIVMSGLGMVNAGVTTQLLVSLFRLKGVLHYGIAGNADVNLEIGDVTIPQYWAHSGLWNWQRYGDGIDNELALESGGDYTREVGYLQFSKYSNRTDNLLNRVWYQPEEIFPVTGTPEERQHVFWIPVDKSYLKLARKLEDTKLPQCVNTTCLPRPPKVTIVKRGMSASVFIDNAAYRTFLNSKFNATAVEMESAAVALISHQQNLPFIVIRALSDLAGGGSDVSNEASIFSSLAAENSVDILVKFVALLPPHESKIQSE", "length": 348, "header": "tr|F4JM51-1|F4JM51_ARATH Isoform 1 of Phosphorylase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JM51-1" }, "locus": { "chromosome": "4", "start_pos": 14274341, "end_pos": 14277252, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G28940.1", "url": "https://www.ensemblgenomes.org/id/AT4G28940.1" }, { "database": "Ensembl Peptide", "id": "AT4G28940.1", "url": "https://www.ensemblgenomes.org/id/AT4G28940.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 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Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8I4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8I4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8I4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8I4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G28940", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G28940", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "F4JM51", "url": "https://www.uniprot.org/uniprotkb/F4JM51" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "nucleoside metabolic process", 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JPJ1", "url": "https://www.uniprot.org/uniprotkb/F4JPJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JPJ1-1", "url": "https://www.uniprot.org/uniprotkb/F4JPJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKRKLTSPKKSKPSKKTKKNSKTQFDDSPVEVVETKAEELPRTGSKKSNPSKKRKQTKKNSETQFEDSSVEVVETKACDQEETVTDIVVEEGPWKNLELILSLQSNTLGFKKKVELAFSFVKGYGGENGTNEDEECQAVKISRLIIFLSDWIQSLLIPSEKNIKVKCDLDSEPCLDFRCWEIFSFCLKEATILGVSLNLSRNLLKAIGLITGRFLSALNESLATGVDFCNGQGFVVYSSVVDCLGLLFSSKSGMSNDNLDLWFSTVEPVLKLTHTVLVENIKDSLGDRHVLKFSCLVLEPFSRFLMTHPTTKNGFCDFLDKLFEPFMDVLGLLNLIEDKNKDLEISLLRLIEDILSLALFHSAHIDGFLGLGGAKKYLPESKENKTILKSYHRHFFTKFKNMLLMKKELELSCMGSLFKVFIYRVMKQQRDPNQLQEGMMTKASNARQAEERPWKLADTATNDNGSSTKSHYSSSLRLETRKSIFDFFLHLMEPILLEINGYNQSGSEMAPLLGDFCCVIKSANSLLFNFAHERMYVKTEDASEGACSCFLRTIFKTIVSVASELKKHCPYDNGSEMHVLLAKELVTAIGYLLHIEYEIIESDLVTLWLIILSFLEFSSLSPENSEGDCPLTSLLVGLGCQLITLYSDLRQVSVAVFSLFKAVRLVMPVVTPADGDDDEMIATEELPLSTVFPFRLERSEKSVEKLLSSQALRLAIHKAIKVIPEGQASGCIKSLTADVSKTMKWIKQVCCSTGATEQDGQVAAFLAGSLSDIYSLILDSITITTGNSNLVGQSMKDLLDLISPCLTHLVSSDSDCIENFLSALTGKDLEIVMAEKKIETYRKSVRLFVIFVLRIYMSSRSLYRQVISLMPPKKTKDMAGIKGDSVAVRCGSDWIKEKSWNYEGYFSWISQPSASIVDTIKHISAFYLKDDSADCSLLIYILYGVALQRLVDLNSHIKSLDYVSQISDNQINDTMLKHVSVLKREGEELTDFLLGNNIISGFVDDGTFETIKDTDQWVLRVSGINGKCLPTMRLWVLSQHIDLWCPHAGKKKLKNFLSQLIGSSVPCILNGVGMSTLGWENNVDKGSQKKKIGLEQFSFGLLFDSVLYEHEFVRRYLAPSFSHVLKMTAETFFKDITEEVNFDSPSDWSEVLILLESSIANLSGKLKSEAFLEAHVSLLDNRKFTACQNLLNLLGVMPKEYTNKKSFQLYASYVLDLERFIVFSMLRCLNKLSCGDMQNLFSLFSTCRKTLKSIAMISCDKVLGATKLPLSDSSLLASWLFKSAQAATCQVRFRNDVTGKARDALFSLMDHTSYMFLTVSKYQFSKALPFSDEKLISSEISEGTGQANLIIENLTEQAETLLNALRATFRDEKTAFKCESLILNKLTPIFSCFSGLLWGLASAVSNRDMQKNHQNAKLRWKSEQFSKLSRIIHVLSNFFEVFAQCLFLSGDVQREIQTNINWTRLLDGTEGSNGLVCGDVVETSDVKKKIIESLIKGDSSEVVLALKHLLIASAAILRLNLQIDGITFSPTFVSVLTNISNDLLSVFADMSEAPLEFSFIWLDGAVKVVEELGSQFCLSNPTLNIDLYSKLIELHLKVIGKCISLQGKEATLESHETGFGTNAIHAKLVLTEKKRSHRLHWLDELKQRLRMSFKVFIHSSSELHLLSGVQAIERALVGVWEVCPAIYCIQTGNRDGGRISETVAAGLDCLDLILEHATGRKRLNVVKRHIQGLMSAVFGIMAHMQSPFIFFSNAVVGNQGSNSPDSGAVILMCVGVLIRIAGKHALFRMDSSHVSQSIHIPGAIFLDYLHATRVGFSVLDGNLLSKDDQQQDLLGCSKELQVDRKFSVSLYAACCRLLYTAVKHHKSQTEGSIATLQESVSALLHCLETAGKNLGNCVSWEVEEGIRCACFLRRIYEELRQQKEVFGQHCFKFLSTYIWVSSGYGPLKTGLEREVDEALRPGVYALIDSCSPNDLQYLHTVFGEGPCRNSLATLQQDYKLNFKYGGKV", "length": 2009, "header": "tr|F4JPJ1-1|F4JPJ1_ARATH Isoform 1 of Urb2/Npa2 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JPJ1-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B8K0-1", "url": "https://www.uniprot.org/uniprotkb/F4JPJ1/entry#A0A1P8B8K0-1", "sequence": { "sequence": "MLKRKLTSPKKSKPSKKTKKNSKTQFDDSPVEVVETKACDQEETVTDIVVEEGPWKNLELILSLQSNTLGFKKKVELAFSFVKGYGGENGTNEDEECQAVKISRLIIFLSDWIQSLLIPSEKNIKVKCDLDSEPCLDFRCWEIFSFCLKEATILGVSLNLSRNLLKAIGLITGRFLSALNESLATGVDFCNGQGFVVYSSVVDCLGLLFSSKSGMSNDNLDLWFSTVEPVLKLTHTVLVENIKDSLGDRHVLKFSCLVLEPFSRFLMTHPTTKNGFCDFLDKLFEPFMDVLGLLNLIEDKNKDLEISLLRLIEDILSLALFHSAHIDGFLGLGGAKKYLPESKENKTILKSYHRHFFTKFKNMLLMKKELELSCMGSLFKVFIYRVMKQQRDPNQLQEGMMTKASNARQAEERPWKLADTATNDNGSSTKSHYSSSLRLETRKSIFDFFLHLMEPILLEINGYNQSGSEMAPLLGDFCCVIKSANSLLFNFAHERMYVKTEDASEGACSCFLRTIFKTIVSVASELKKHCPYDNGSEMHVLLAKELVTAIGYLLHIEYEIIESDLVTLWLIILSFLEFSSLSPENSEGDCPLTSLLVGLGCQLITLYSDLRQVSVAVFSLFKAVRLVMPVVTPADGDDDEMIATEELPLSTVFPFRLERSEKSVEKLLSSQALRLAIHKAIKVIPEGQASGCIKSLTADVSKTMKWIKQVCCSTGATEQDGQVAAFLAGSLSDIYSLILDSITITTGNSNLVGQSMKDLLDLISPCLTHLVSSDSDCIENFLSALTGKDLEIVMAEKKIETYRKSVRLFVIFVLRIYMSSRSLYRQVISLMPPKKTKDMAGIKGDSVAVRCGSDWIKEKSWNYEGYFSWISQPSASIVDTIKHISAFYLKDDSADCSLLIYILYGVALQRLVDLNSHIKSLDYVSQISDNQINDTMLKHVSVLKREGEELTDFLLGNNIISGFVDDGTFETIKDTDQWVLRVSGINGKCLPTMRLWVLSQHIDLWCPHAGKKKLKNFLSQLIGSSVPCILNGVGMSTLGWENNVDKGSQKKKIGLEQFSFGLLFDSVLYEHEFVRRYLAPSFSHVLKMTAETFFKDITEEVNFDSPSDWSEVLILLESSIANLSGKLKSEAFLEAHVSLLDNRKFTACQNLLNLLGVMPKEYTNKKSFQLYASYVLDLERFIVFSMLRCLNKLSCGDMQNLFSLFSTCRKTLKSIAMISCDKVLGATKLPLSDSSLLASWLFKSAQAATCQVRFRNDVTGKARDALFSLMDHTSYMFLTVSKYQFSKALPFSDEKLISSEISEGTGQANLIIENLTEQAETLLNALRATFRDEKTAFKCESLILNKLTPIFSCFSGLLWGLASAVSNRDMQKNHQNAKLRWKSEQFSKLSRIIHVLSNFFEVFAQCLFLSGDVQREIQTNINWTRLLDGTEGSNGLVCGDVVETSDVKKKIIESLIKGDSSEVVLALKHLLIASAAILRLNLQIDGITFSPTFVSVLTNISNDLLSVFADMSEAPLEFSFIWLDGAVKVVEELGSQFCLSNPTLNIDLYSKLIELHLKVIGKCISLQGKEATLESHETGFGTNAIHAKLVLTEKKRSHRLHWLDELKQRLRMSFKVFIHSSSELHLLSGVQAIERALVGVWEVCPAIYCIQTGNRDGGRISETVAAGLDCLDLILEHATGRKRLNVVKRHIQGLMSAVFGIMAHMQSPFIFFSNAVVGNQGSNSPDSGAVILMCVGVLIRIAGKHALFRMDSSHVSQSIHIPGAIFLDYLHATRVGFSVLDGNLLSKDDQQQDLLGCSKELQVDRKFSVSLYAACCRLLYTAVKHHKSQTEGSIATLQESVSALLHCLETAGKNLGNCVSWEVEEGIRCACFLRRIYEELRQQKEVFGQHCFKFLSTYIWVSSGYGPLKTGLEREVDEALRPGVYALIDSCSPNDLQYLHTVFGEGPCRNSLATLQQDYKLNFKYGGKV", "length": 1969, "header": "tr|A0A1P8B8K0-1|F4JPJ1_ARATH Computationally mapped isoform of Urb2/Npa2 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JPJ1-1" }, "locus": { "chromosome": "4", "start_pos": 14742389, "end_pos": 14749987, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G30150.2", "url": "https://www.ensemblgenomes.org/id/AT4G30150.2" }, { "database": "Ensembl Peptide", "id": "AT4G30150.2", "url": "https://www.ensemblgenomes.org/id/AT4G30150.2" } ] } }, { "isoform_ac": "F4JPJ1-1", "url": "https://www.uniprot.org/uniprotkb/F4JPJ1/entry#F4JPJ1-1", "sequence": { "sequence": "MLKRKLTSPKKSKPSKKTKKNSKTQFDDSPVEVVETKAEELPRTGSKKSNPSKKRKQTKKNSETQFEDSSVEVVETKACDQEETVTDIVVEEGPWKNLELILSLQSNTLGFKKKVELAFSFVKGYGGENGTNEDEECQAVKISRLIIFLSDWIQSLLIPSEKNIKVKCDLDSEPCLDFRCWEIFSFCLKEATILGVSLNLSRNLLKAIGLITGRFLSALNESLATGVDFCNGQGFVVYSSVVDCLGLLFSSKSGMSNDNLDLWFSTVEPVLKLTHTVLVENIKDSLGDRHVLKFSCLVLEPFSRFLMTHPTTKNGFCDFLDKLFEPFMDVLGLLNLIEDKNKDLEISLLRLIEDILSLALFHSAHIDGFLGLGGAKKYLPESKENKTILKSYHRHFFTKFKNMLLMKKELELSCMGSLFKVFIYRVMKQQRDPNQLQEGMMTKASNARQAEERPWKLADTATNDNGSSTKSHYSSSLRLETRKSIFDFFLHLMEPILLEINGYNQSGSEMAPLLGDFCCVIKSANSLLFNFAHERMYVKTEDASEGACSCFLRTIFKTIVSVASELKKHCPYDNGSEMHVLLAKELVTAIGYLLHIEYEIIESDLVTLWLIILSFLEFSSLSPENSEGDCPLTSLLVGLGCQLITLYSDLRQVSVAVFSLFKAVRLVMPVVTPADGDDDEMIATEELPLSTVFPFRLERSEKSVEKLLSSQALRLAIHKAIKVIPEGQASGCIKSLTADVSKTMKWIKQVCCSTGATEQDGQVAAFLAGSLSDIYSLILDSITITTGNSNLVGQSMKDLLDLISPCLTHLVSSDSDCIENFLSALTGKDLEIVMAEKKIETYRKSVRLFVIFVLRIYMSSRSLYRQVISLMPPKKTKDMAGIKGDSVAVRCGSDWIKEKSWNYEGYFSWISQPSASIVDTIKHISAFYLKDDSADCSLLIYILYGVALQRLVDLNSHIKSLDYVSQISDNQINDTMLKHVSVLKREGEELTDFLLGNNIISGFVDDGTFETIKDTDQWVLRVSGINGKCLPTMRLWVLSQHIDLWCPHAGKKKLKNFLSQLIGSSVPCILNGVGMSTLGWENNVDKGSQKKKIGLEQFSFGLLFDSVLYEHEFVRRYLAPSFSHVLKMTAETFFKDITEEVNFDSPSDWSEVLILLESSIANLSGKLKSEAFLEAHVSLLDNRKFTACQNLLNLLGVMPKEYTNKKSFQLYASYVLDLERFIVFSMLRCLNKLSCGDMQNLFSLFSTCRKTLKSIAMISCDKVLGATKLPLSDSSLLASWLFKSAQAATCQVRFRNDVTGKARDALFSLMDHTSYMFLTVSKYQFSKALPFSDEKLISSEISEGTGQANLIIENLTEQAETLLNALRATFRDEKTAFKCESLILNKLTPIFSCFSGLLWGLASAVSNRDMQKNHQNAKLRWKSEQFSKLSRIIHVLSNFFEVFAQCLFLSGDVQREIQTNINWTRLLDGTEGSNGLVCGDVVETSDVKKKIIESLIKGDSSEVVLALKHLLIASAAILRLNLQIDGITFSPTFVSVLTNISNDLLSVFADMSEAPLEFSFIWLDGAVKVVEELGSQFCLSNPTLNIDLYSKLIELHLKVIGKCISLQGKEATLESHETGFGTNAIHAKLVLTEKKRSHRLHWLDELKQRLRMSFKVFIHSSSELHLLSGVQAIERALVGVWEVCPAIYCIQTGNRDGGRISETVAAGLDCLDLILEHATGRKRLNVVKRHIQGLMSAVFGIMAHMQSPFIFFSNAVVGNQGSNSPDSGAVILMCVGVLIRIAGKHALFRMDSSHVSQSIHIPGAIFLDYLHATRVGFSVLDGNLLSKDDQQQDLLGCSKELQVDRKFSVSLYAACCRLLYTAVKHHKSQTEGSIATLQESVSALLHCLETAGKNLGNCVSWEVEEGIRCACFLRRIYEELRQQKEVFGQHCFKFLSTYIWVSSGYGPLKTGLEREVDEALRPGVYALIDSCSPNDLQYLHTVFGEGPCRNSLATLQQDYKLNFKYGGKV", "length": 2009, "header": "tr|F4JPJ1-1|F4JPJ1_ARATH Isoform 1 of Urb2/Npa2 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JPJ1-1" }, "locus": { "chromosome": "4", "start_pos": 14742292, "end_pos": 14750042, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G30150.1", "url": "https://www.ensemblgenomes.org/id/AT4G30150.1" }, { "database": "Ensembl Peptide", "id": "AT4G30150.1", "url": "https://www.ensemblgenomes.org/id/AT4G30150.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1117, "end_pos": 1117, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JPJ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JPJ1" } ], "site_lbl": "Tyr1117" }, { "start_pos": 2005, "end_pos": 2005, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JPJ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JPJ1" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Tyr2005" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8K0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8K0" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8K0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8K0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "F4JPJ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JPJ1" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "pathway": [ { "id": "ath:AT4G30150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G30150", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F4JPJ1", "url": "https://www.uniprot.org/uniprotkb/F4JPJ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ribosome biogenesis", "id": "GO:0042254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042254", "evidence": [ { "database": "UniProtKB", "id": "F4JPJ1", "url": "https://www.uniprot.org/uniprotkb/F4JPJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1162, "end_pos": 1164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1354, "end_pos": 1356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1462, "end_pos": 1464, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1539, "end_pos": 1541, "annotation": "n_glycosylation_sequon" }, { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 220, "end_pos": 222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 385, "end_pos": 387, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 504, "end_pos": 506, "annotation": "n_glycosylation_sequon" }, { "start_pos": 574, "end_pos": 576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 973, "end_pos": 975, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JPJ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 2009, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JPJ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JPJ1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JPJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JPJ1" }, { "id": "PF10441", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10441" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleolar 27S pre-rRNA processing Urb2/Npa2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 1773, "end_pos": 2008, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 1117, 2005 ], "sequon_annotation_sites": [ { "start_pos": 1162, "end_pos": 1164 }, { "start_pos": 129, "end_pos": 131 }, { "start_pos": 1354, "end_pos": 1356 }, { "start_pos": 1462, "end_pos": 1464 }, { "start_pos": 1539, "end_pos": 1541 }, { "start_pos": 199, "end_pos": 201 }, { "start_pos": 220, "end_pos": 222 }, { "start_pos": 385, "end_pos": 387 }, { "start_pos": 465, "end_pos": 467 }, { "start_pos": 504, "end_pos": 506 }, { "start_pos": 574, "end_pos": 576 }, { "start_pos": 973, "end_pos": 975 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JKN4-1", "uniprot_ac": "F4JKN4", "uniprot_id": "F4JKN4_ARATH", "mass": { "chemical_mass": 133454.0, "monoisotopic_mass": 133454.0 }, "refseq": { "ac": "NP_195157", "name": "alpha/beta-Hydrolases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_195157" }, "gene_names": [ { "name": "F10M10.80", "type": "synonym", "evidence": [ { "id": "NP_195157", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_195157" }, { "id": "F4JKN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKN4" } ] }, { "name": "F10M10_80", "type": "synonym", "evidence": [ { "id": "NP_195157", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_195157" }, { "id": "F4JKN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKN4" } ] } ], "protein_names": [ { "name": "Alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "F4JKN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#names_and_taxonomy" } ] }, { "name": "alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_195157", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_195157" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JKN4", "url": "https://www.uniprot.org/uniprotkb/F4JKN4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JKN4", "locus": {} } ], "crossref": [ { "id": "F4JKN4", "url": "https://alphafold.ebi.ac.uk/entry/F4JKN4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G34310", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G34310", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829581", "url": "https://www.ncbi.nlm.nih.gov/gene/829581", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G34310", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G34310", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IWCKWLE", "url": "https://omabrowser.org/oma/group/IWCKWLE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48202", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48202", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48202:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48202:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_195157", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_195157", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G34310", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G34310", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B8L7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8L7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8L7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8L7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8L8", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8L8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8L8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8L8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8M0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8M0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8M0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8M0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8M2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8M2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8M2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8M7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8M7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8M7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8N2", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8N2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8N2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8N2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8P3", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8P3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8P3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKN4", "url": "https://www.uniprot.org/uniprotkb/F4JKN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKN4-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKN5", "url": "https://www.uniprot.org/uniprotkb/F4JKN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JKN5-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRLRFNILRSSHRRLFHRLPRFFSSSSAPTNGSSGPSLNLIKPKLTPSPPPHQSRGLLRSIYTVSPSSSFSKKSVFVLSAAALSTAIAYSAVIPSDHDQSNRSPSGNSRIYESIEDAVQKSGNSLRRVVHHARQTGVAVSVLWQSLRSVLSSANHEVRAGFELRVAALLADIASANAARRAALVGAGSGAVVDWLLETVAIPGDRIGAQDEAARALAYLIADPTVRKDALGRPDAVPKLLKFVFSCQPKNKKHSRRSSFDISDSLKGRSMLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVFYSCPHFGSKLADMPWRMGLVLRPAPSIGELRSGSPRLVELNDLLRQLHKKGVVEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVVLESTDHINSCKPLSRSDPSYTEALQFLRKLSAQRLKPHVKREPGIHD", "length": 1228, "header": "tr|F4JKN4-1|F4JKN4_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKN4-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B8L7-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#A0A1P8B8L7-1", "sequence": { "sequence": "MIRLRFNILRSSHRRLFHRLPRFFSSSSAPTNGSSGPSLNLIKPKLTPSPPPHQSRGLLRSIYTVSPSSSFSKKSVFVLSAAALSTAIAYSAVIPSDHDQSNRSPSGNSRIYESIEDAVQKSGNSLRRVVHHARQTGVAVSVLWQSLRSVLSSANHEVRAGFELRVAALLADIASANAARRAALVGAGSGAVVDWLLETVAIPGDRIGAQDEAARALAYLIADPTVRKDALGRPDAVPKLLKFVFSCQPKNKKHSRRSSFDISDSLKGRSMLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVCINASCLSGILQLPTFWQQASRYAVENGSCVTPGSIC", "length": 1123, "header": "tr|A0A1P8B8L7-1|F4JKN4_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKN4-1" }, "locus": { "chromosome": "4", "start_pos": 16413980, "end_pos": 16419735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34310.5", "url": "https://www.ensemblgenomes.org/id/AT4G34310.5" }, { "database": "Ensembl Peptide", "id": "AT4G34310.5", "url": "https://www.ensemblgenomes.org/id/AT4G34310.5" } ] } }, { "isoform_ac": "A0A1P8B8L8-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#A0A1P8B8L8-1", "sequence": { "sequence": "MLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVCINASCLSGILQLPTFWQQASRYAVENGSCVTPGSIYRRATKWFSKTS", "length": 864, "header": "tr|A0A1P8B8L8-1|F4JKN4_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKN4-1" }, "locus": { "chromosome": "4", "start_pos": 16413980, "end_pos": 16419735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34310.8", "url": "https://www.ensemblgenomes.org/id/AT4G34310.8" }, { "database": "Ensembl Peptide", "id": "AT4G34310.8", "url": "https://www.ensemblgenomes.org/id/AT4G34310.8" } ] } }, { "isoform_ac": "A0A1P8B8M0-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#A0A1P8B8M0-1", "sequence": { "sequence": "MIRLRFNILRSSHRRLFHRLPRFFSSSSAPTNGSSGPSLNLIKPKLTPSPPPHQSRGLLRSIYTVSPSSSFSKKSVFVLSAAALSTAIAYSAVIPSDHDQSNRSPSGNSRIYESIEDAVQKSGNSLRRVVHHARQTGVAVSVLWQSLRSVLSSANHEVRAGFELRVAALLADIASANAARRAALVGAGSGAVVDWLLETVAIPGDRIGAQDEAARALAYLIADPTVRKDALGRPDAVPKLLKFVFSCQPKNKKHSRRSSFDISDSLKGRSMLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVCINASCLSGILQLPTFWQQASRYAVENGSCVTPGSIYRRATKWFSKTS", "length": 1134, "header": "tr|A0A1P8B8M0-1|F4JKN4_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKN4-1" }, "locus": { "chromosome": "4", "start_pos": 16413980, "end_pos": 16419735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34310.9", "url": "https://www.ensemblgenomes.org/id/AT4G34310.9" }, { "database": "Ensembl Peptide", "id": "AT4G34310.9", "url": "https://www.ensemblgenomes.org/id/AT4G34310.9" } ] } }, { "isoform_ac": "A0A1P8B8M2-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#A0A1P8B8M2-1", "sequence": { "sequence": "MIRLRFNILRSSHRRLFHRLPRFFSSSSAPTNGSSGPSLNLIKPKLTPSPPPHQSRGLLRSIYTVSPSSSFSKKSVFVLSAAALSTAIAYSAVIPSDHDQSNRSPSGNSRIYESIEDAVQKSGNSLRRVVHHARQTGVAVSVLWQSLRSVLSSANHEVRAGFELRVAALLADIASANAARRAALVGAGSGAVVDWLLETVAIPGDRIGAQDEAARALAYLIADPTVRKDALGRPDAVPKLLKFVFSCQPKNKKHSRRSSFDISDSLKGRSMLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVCINASCLSGFLLS", "length": 1099, "header": "tr|A0A1P8B8M2-1|F4JKN4_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKN4-1" }, "locus": { "chromosome": "4", "start_pos": 16413980, "end_pos": 16419735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34310.4", "url": "https://www.ensemblgenomes.org/id/AT4G34310.4" }, { "database": "Ensembl Peptide", "id": "AT4G34310.4", "url": "https://www.ensemblgenomes.org/id/AT4G34310.4" } ] } }, { "isoform_ac": "A0A1P8B8M7-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#A0A1P8B8M7-1", "sequence": { "sequence": "MLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVFYSCPHFGSKLADMPWRMGLVLRPAPSVSKHYYFIELA", "length": 854, "header": "tr|A0A1P8B8M7-1|F4JKN4_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKN4-1" }, "locus": { "chromosome": "4", "start_pos": 16413998, "end_pos": 16419735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34310.10", "url": "https://www.ensemblgenomes.org/id/AT4G34310.10" }, { "database": "Ensembl Peptide", "id": "AT4G34310.10", "url": "https://www.ensemblgenomes.org/id/AT4G34310.10" } ] } }, { "isoform_ac": "A0A1P8B8N2-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#A0A1P8B8N2-1", "sequence": { "sequence": "MIRLRFNILRSSHRRLFHRLPRFFSSSSAPTNGSSGPSLNLIKPKLTPSPPPHQSRGLLRSIYTVSPSSSFSKKSVFVLSAAALSTAIAYSAVIPSDHDQSNRSPSGNSRIYESIEDAVQKSGNSLRRVVHHARQTGVAVSVLWQSLRSVLSSANHEVRAGFELRVAALLADIASANAARRAALVGAGSGAVVDWLLETVAIPGDRIGAQDEAARALAYLIADPTVRKDALGRPDAVPKLLKFVFSCQPKNKKHSRRSSFDISDSLKGRSMLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVFYSCPHFGSKLADMPWRMGLVLRPAPSVSKHYYFIELA", "length": 1124, "header": "tr|A0A1P8B8N2-1|F4JKN4_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKN4-1" }, "locus": { "chromosome": "4", "start_pos": 16413980, "end_pos": 16419735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34310.7", "url": "https://www.ensemblgenomes.org/id/AT4G34310.7" }, { "database": "Ensembl Peptide", "id": "AT4G34310.7", "url": "https://www.ensemblgenomes.org/id/AT4G34310.7" } ] } }, { "isoform_ac": "A0A1P8B8P3-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#A0A1P8B8P3-1", "sequence": { "sequence": "MLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVFYSCPHFGSKLADMPWRMGLVLRPAPSIGELRSGSPRLVELNDLLRQLHKKGVVEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVVSTSIYKIP", "length": 919, "header": "tr|A0A1P8B8P3-1|F4JKN4_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKN4-1" }, "locus": { "chromosome": "4", "start_pos": 16413980, "end_pos": 16419735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34310.6", "url": "https://www.ensemblgenomes.org/id/AT4G34310.6" }, { "database": "Ensembl Peptide", "id": "AT4G34310.6", "url": "https://www.ensemblgenomes.org/id/AT4G34310.6" } ] } }, { "isoform_ac": "F4JKN4-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#F4JKN4-1", "sequence": { "sequence": "MIRLRFNILRSSHRRLFHRLPRFFSSSSAPTNGSSGPSLNLIKPKLTPSPPPHQSRGLLRSIYTVSPSSSFSKKSVFVLSAAALSTAIAYSAVIPSDHDQSNRSPSGNSRIYESIEDAVQKSGNSLRRVVHHARQTGVAVSVLWQSLRSVLSSANHEVRAGFELRVAALLADIASANAARRAALVGAGSGAVVDWLLETVAIPGDRIGAQDEAARALAYLIADPTVRKDALGRPDAVPKLLKFVFSCQPKNKKHSRRSSFDISDSLKGRSMLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVFYSCPHFGSKLADMPWRMGLVLRPAPSIGELRSGSPRLVELNDLLRQLHKKGVVEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVVLESTDHINSCKPLSRSDPSYTEALQFLRKLSAQRLKPHVKREPGIHD", "length": 1228, "header": "tr|F4JKN4-1|F4JKN4_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKN4-1" }, "locus": { "chromosome": "4", "start_pos": 16413974, "end_pos": 16419735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34310.1", "url": "https://www.ensemblgenomes.org/id/AT4G34310.1" }, { "database": "Ensembl Peptide", "id": "AT4G34310.1", "url": "https://www.ensemblgenomes.org/id/AT4G34310.1" } ] } }, { "isoform_ac": "F4JKN5-1", "url": "https://www.uniprot.org/uniprotkb/F4JKN4/entry#F4JKN5-1", "sequence": { "sequence": "MLVAAIMDIVTSNCDTIEKTPFKSSLPGNATMRDIAAAIQVIEEGGMYFDEPEKDDDSDDGRSGIKGIGIKILEGTTVLGLSRTSGLAPLGDLNANAGEETPKTFALLSKHDNSSQANLSSAVIPGLWDDLHCQHVAVPFAAWALANWAMASDTNRSHIQELDRDGQVVMTALMAPERTVKWHGSLVARLLLEDLKLPLSDSVSDWSSSLLATVSHASKTEDISLAQVALSAFLVSVDRSDKAQKMVMEKGLHLMRDSARKTRKHKAVQEGLSKALELLCAGDMHLSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEILNHSKTVSAKGASLPKNEKPKVDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESVNNVPLADLLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSVCQNKIVDFGILCLLRRFLLSDDYEKLGAIEAYDASRALEARDRTPDSLGESSITDIQDPCSVRVPASAHIRRHAARLLTILSLLPQVQKIILADETWCKWLDDCAKGNISCCNDPKTQSYARASLLNVYCNQQDGSGSGDGGSSKPDISNMNSNCPRYGDMIFLINPGLPHWKCHEKERQSGKKNESSSEGEPANVTDTVGDHVVDASNLSSSIDPSSSGSHVHDPEFDVIFLHGLRGGPFKTWRIAEDKSSTKSGLVEKIDQEAGKLGTFWPSEWLSNDFPQARLFTLKYKTNLTEWSGASLPLQEVSSMILEKLVSAGIGDRPVVFVTHSMGGLVVKQILHKAKEEKLDKLVNNTAGVVFYSCPHFGSKLADMPWRMGLVLRPAPSIGELRSGSPRLVELNDLLRQLHKKGVVEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVVLESTDHINSCKPLSRSDPSYTEALQFLRKLSAQRLKPHVKREPGIHD", "length": 958, "header": "tr|F4JKN5-1|F4JKN5_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4JKN4-1" }, "locus": { "chromosome": "4", "start_pos": 16413980, "end_pos": 16419735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G34310.2", "url": "https://www.ensemblgenomes.org/id/AT4G34310.2" }, { "database": "Ensembl Peptide", "id": "AT4G34310.2", "url": "https://www.ensemblgenomes.org/id/AT4G34310.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8L7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8L7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8L7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8L7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G34310", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G34310", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JKN4", "url": "https://www.uniprot.org/uniprotkb/F4JKN4" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JKN4", "url": "https://www.uniprot.org/uniprotkb/F4JKN4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1019, "end_pos": 1021, "annotation": "n_glycosylation_sequon" }, { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1080, "end_pos": 1082, "annotation": "n_glycosylation_sequon" }, { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 388, "end_pos": 390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 425, "end_pos": 427, "annotation": "n_glycosylation_sequon" }, { "start_pos": 617, "end_pos": 619, "annotation": "n_glycosylation_sequon" }, { "start_pos": 833, "end_pos": 835, "annotation": "n_glycosylation_sequon" }, { "start_pos": 910, "end_pos": 912, "annotation": "n_glycosylation_sequon" }, { "start_pos": 920, "end_pos": 922, "annotation": "n_glycosylation_sequon" }, { "start_pos": 934, "end_pos": 936, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JKN4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1228, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JKN4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JKN4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1019, "end_pos": 1021 }, { "start_pos": 102, "end_pos": 104 }, { "start_pos": 1080, "end_pos": 1082 }, { "start_pos": 299, "end_pos": 301 }, { "start_pos": 32, "end_pos": 34 }, { "start_pos": 383, "end_pos": 385 }, { "start_pos": 388, "end_pos": 390 }, { "start_pos": 425, "end_pos": 427 }, { "start_pos": 617, "end_pos": 619 }, { "start_pos": 833, "end_pos": 835 }, { "start_pos": 910, "end_pos": 912 }, { "start_pos": 920, "end_pos": 922 }, { "start_pos": 934, "end_pos": 936 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JQZ7-1", "uniprot_ac": "F4JQZ7", "uniprot_id": "F4JQZ7_ARATH", "mass": { "chemical_mass": 129626.0, "monoisotopic_mass": 129626.0 }, "refseq": {}, "gene_names": [ { "name": "F22K18.190", "type": "synonym", "evidence": [ { "id": "F4JQZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7" } ] }, { "name": "F22K18_190", "type": "synonym", "evidence": [ { "id": "F4JQZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7" } ] } ], "protein_names": [ { "name": "Pesticidal crystal cry8Ba protein", "type": "synonym", "evidence": [ { "id": "F4JQZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JQZ7", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7", "locus": {} } ], "crossref": [ { "id": "F4JQZ7", "url": "https://alphafold.ebi.ac.uk/entry/F4JQZ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G24610", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G24610", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828563", "url": "https://www.ncbi.nlm.nih.gov/gene/828563", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G24610", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G24610", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GFKYVQK", "url": "https://omabrowser.org/oma/group/GFKYVQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31110:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31110:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "AT4G24610", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G24610", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B8V7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8V7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8Y0", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8Y0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8Y0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQZ6", "url": "https://www.uniprot.org/uniprotkb/F4JQZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQZ6-1", "url": "https://www.uniprot.org/uniprotkb/F4JQZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQZ7", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JQZ7-1", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIPNGELRLPALKVREDRVSPSAPIPVTRTLVADTDVTSDDDMSTNSEDVSLDSSPENSRVSSAVGRSYGRNSSYYTYSEVSSSRETLVGAREQTGPRFDGDTEEDESTDSASSTQFSPPPAAGRINDGVSQVEQTHFPKTDRRATVEKFILQEFDETFSSEEVSDIPSAPPFSGAAEESEEIKPATSSVQVSEVKTGDCVESRKTGHFTRPSAASESSGPPDQHPARLPTFHASSRGPWHAVVSYDACVRLCLHAWSTGCMEAPMFLENECALLREAFGLQQLLLQSEEELLAKRSSQAPHEGVAPKPKKNIGKMKVQVRRVKTVMDGPTGCSISSLKPSLIKFEKIRIHFSNMSTRLFSGWRALRKIHVRVPANGSSLPRQSLAYVHASTQYLKQVSGLLKTGVTSLRNNSTSYDIVQETYSCKLRLKSLAEDNAIMMQPGSGESHVFFPDSHGDDLIVEILDPMGKDFGRVLVQLANISEDSAEKLRWWSVFREPEHQHVGKLQLYIDYSASFDDNSHLKCASVAETVAYDLVLEVALKMQRFQQRNLLLYGSWKWLLEEFATYYGISDVYTKLRYLSYVMDVATPTSDCLHLVHDLLTPVIMKGNGKSALSHQENRILNEIKDQIEQILKLVFENYKSLDESSFSGMIDVVNSASGVPAPALIPAVKLYTLLHDVLSPEDQTHLCHYFQAAAKKRSRRHMGETDEFVANNSEPNFWDMSAMSAAYQKMTMACKNVKNEIYTDIEIQNEDILPSFLDLPNLSASIYSTDLCNRLRAFLVACPPSGPSPTVAELVIATADFQRDLSSWNISPIQGGVDAKELFHLYIMIWIQDKRLSLLESCKLDKQVKWSGVRTQHSTTPFVDEMYKRLNETIQDYQVIISRWPEYIFVLESAIADVEKATVEALEKQYADVLSPLKENLAPKKLSFKYVQKLTKRSVIPYVVPDELGILLNSMKRMLDVLRPNIEAKFKAWSSCIPDGGNAAPGDRLSEVTVMLRAKFRSYLQAVVEKLVENSKLQKTTMLKKILQDSKESVGESDIRSKMNNLKEQLTNTVNHLHSVCETHVFIALSRGYWDRMGQIVLSFLENRKENRAWYKGSRVAVSILDDTFAAQMQQLLGNSLREQDLEPPRSIMEVRSILCKDPADNKAKSFYY", "length": 1155, "header": "tr|F4JQZ7-1|F4JQZ7_ARATH Isoform 1 of Pesticidal crystal cry8Ba protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQZ7-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B8V7-1", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7/entry#A0A1P8B8V7-1", "sequence": { "sequence": "MIPNGELRLPALKVREDRVSPSAPIPVTRTLVADTDVTSDDDMSTNSEDVSLDSSPENSRVSSAVGRSYGRNSSYYTYSEVSSSRETLVGAREQTGPRFDGDTEEDESTDSASSTQFSPPPAAGRINDGVSQVEQTHFPKTDRRATVEKFILQEFDETFSSEEVSDIPSAPPFSGAAEESEEIKPATSSVQVSEVKTGDCVESRKTGHFTRPSAASESSGPPDQHPARLPTFHASSRGPWHAVVSYDACVRLCLHAWSTGCMEAPMFLENECALLREAFGLQQLLLQSEEELLAKRSSQAPHEGVAPKPKKNIGKMKVQVRRVKTVMDGPTGCSISSLKPSLIKFEKIRIHFSNMSTRLFSGWRALRKIHVRVPANGSSLPRQSLAYVHASTQYLKQVSGLLKTGVTSLRNNSTSYDIVQETYSCKLRLKSLAEDNAIMMQPGSGESHVFFPDSHGDDLIVEILDPMGKDFGRVLVQLANISEDSAEKLRWWSVFREPEHQHVGKLQLYIDYSASFDDNSHLKCASVAETVAYDLVLEVALKMQRFQQRNLLLYGSWKWLLEEFATYYGISDVYTKLRYLSYVMDVATPTSDCLHLVHDLLTPVIMKGNGKSALSHQENRILNEIKDQIEQILKLVFENYKSLDESSFSGMIDVVNSASGVPAPALIPAVKLYTLLHDVLSPEDQTHLCHYFQAAAKKRSRRHMGETDEFVANNSEPNFWDMSAMSAAYQKMTMACKNVKNEIYTDIEIQNEDILPSFLDLPNLSASIYSTDLCNRLRAFLVACPPSGPSPTVAELVIATADFQRDLSSWNISPIQGGVDAKELFHLYIMIWIQDKRLSLLESCKLDKVKWSGVRTQHSTTPFVDEMYKRLNETIQDYQVIISRWPEYIFVLESAIADVEKATVEALEKQYADVLSPLKENLAPKKLSFKYVQKLTKRSVIPYVVPDELGILLNSMKRMLDVLRPNIEAKFKAWSSCIPDGGNAAPGDRLSEVTVMLRAKFRSYLQAVVEKLVENSKLQKTTMLKKILQDSKESVGESDIRSKMNNLKEQLTNTVNHLHSVCETHVFIALSRGYWDRMGQIVLSFLENRKENRAWYKGSRVAVSILDDTFAAQMQQLLGNSLREQDLEPPRSIMEVRSILCKDPADNKAKSFYY", "length": 1154, "header": "tr|A0A1P8B8V7-1|F4JQZ7_ARATH Computationally mapped isoform of Pesticidal crystal cry8Ba protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQZ7-1" }, "locus": { "chromosome": "4", "start_pos": 12700317, "end_pos": 12708424, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24610.3", "url": "https://www.ensemblgenomes.org/id/AT4G24610.3" }, { "database": "Ensembl Peptide", "id": "AT4G24610.3", "url": "https://www.ensemblgenomes.org/id/AT4G24610.3" } ] } }, { "isoform_ac": "A0A1P8B8Y0-1", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7/entry#A0A1P8B8Y0-1", "sequence": { "sequence": "MIPNGELRLPALKVREDRVSPSAPIPVTRTLVADTDVTSDDDMSTNSEDVSLDSSPENSRVSSAVGRSYGRNSSYYTYSEVSSSRETLVGAREQTGPRFDGDTEEDESTDSASSTQFSPPPAAGRINDGVSQVEQTHFPKTDRRATVEKEFDETFSSEEVSDIPSAPPFSGAAEESEEIKPATSSVQVSEVKTGDCVESRKTGHFTRPSAASESSGPPDQHPARLPTFHASSRGPWHAVVSYDACVRLCLHAWSTGCMEAPMFLENECALLREAFGLQQLLLQSEEELLAKRSSQAPHEGVAPKPKKNIGKMKVQVRRVKTVMDGPTGCSISSLKPSLIKFEKIRIHFSNMSTRLFSGWRALRKIHVRVPANGSSLPRQSLAYVHASTQYLKQVSGLLKTGVTSLRNNSTSYDIVQETYSCKLRLKSLAEDNAIMMQPGSGESHVFFPDSHGDDLIVEILDPMGKDFGRVLVQLANISEDSAEKLRWWSVFREPEHQHVGKLQLYIDYSASFDDNSHLKCASVAETVAYDLVLEVALKMQRFQQRNLLLYGSWKWLLEEFATYYGISDVYTKLRYLSYVMDVATPTSDCLHLVHDLLTPVIMKGNGKSALSHQENRILNEIKDQIEQILKLVFENYKSLDESSFSGMIDVVNSASGVPAPALIPAVKLYTLLHDVLSPEDQTHLCHYFQAAAKKRSRRHMGETDEFVANNSEPNFWDMSAMSAAYQKMTMACKNVKNEIYTDIEIQNEDILPSFLDLPNLSASIYSTDLCNRLRAFLVACPPSGPSPTVAELVIATADFQRDLSSWNISPIQGGVDAKELFHLYIMIWIQDKRLSLLESCKLDKQVKWSGVRTQHSTTPFVDEMYKRLNETIQDYQVIISRWPEYIFVLESAIADVEKATVEALEKQYADVLSPLKENLAPKKLSFKYVQKLTKRSVIPYVVPDELGILLNSMKRMLDVLRPNIEAKFKAWSSCIPDGGNAAPGDRLSEVTVMLRAKFRSYLQAVVEKLVENSKLQKTTMLKKILQDSKESVGESDIRSKMNNLKEQLTNTVNHLHSVCETHVFIALSRGYWDRMGQIVLSFLENRKENRAWYKGSRVAVSILDDTFAAQMQQLLGNSLREQDLEPPRSIMEVRSILCKDPADNKAKSFYY", "length": 1151, "header": "tr|A0A1P8B8Y0-1|F4JQZ7_ARATH Computationally mapped isoform of Pesticidal crystal cry8Ba protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQZ7-1" }, "locus": { "chromosome": "4", "start_pos": 12700524, "end_pos": 12708170, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24610.4", "url": "https://www.ensemblgenomes.org/id/AT4G24610.4" }, { "database": "Ensembl Peptide", "id": "AT4G24610.4", "url": "https://www.ensemblgenomes.org/id/AT4G24610.4" } ] } }, { "isoform_ac": "F4JQZ6-1", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7/entry#F4JQZ6-1", "sequence": { "sequence": "MIPNGELRLPALKVREDRVSPSAPIPVTRTLVADTDVTSDDDMSTNSEDVSLDSSPENSRVSSAVGRSYGRNSSYYTYSEVSSSRETLVGAREQTGPRFDGDTEEDESTDSASSTQFSPPPAAGRINDGVSQVEQTHFPKTDRRATVEKEFDETFSSEEVSDIPSAPPFSGAAEESEEIKPATSSVQVSEVKTGDCVESRKTGHFTRPSAASESSGPPDQHPARLPTFHASSRGPWHAVVSYDACVRLCLHAWSTGCMEAPMFLENECALLREAFGLQQLLLQSEEELLAKRSSQAPHEGVAPKPKKNIGKMKVQVRRVKTVMDGPTGCSISSLKPSLIKFEKIRIHFSNMSTRLFSGWRALRKIHVRVPANGSSLPRQSLAYVHASTQYLKQVSGLLKTGVTSLRNNSTSYDIVQETYSCKLRLKSLAEDNAIMMQPGSGESHVFFPDSHGDDLIVEILDPMGKDFGRVLVQLANISEDSAEKLRWWSVFREPEHQHVGKLQLYIDYSASFDDNSHLKCASVAETVAYDLVLEVALKMQRFQQRNLLLYGSWKWLLEEFATYYGISDVYTKLRYLSYVMDVATPTSDCLHLVHDLLTPVIMKGNGKSALSHQENRILNEIKDQIEQILKLVFENYKSLDESSFSGMIDVVNSASGVPAPALIPAVKLYTLLHDVLSPEDQTHLCHYFQAAAKKRSRRHMGETDEFVANNSEPNFWDMSAMSAAYQKMTMACKNVKNEIYTDIEIQNEDILPSFLDLPNLSASIYSTDLCNRLRAFLVACPPSGPSPTVAELVIATADFQRDLSSWNISPIQGGVDAKELFHLYIMIWIQDKRLSLLESCKLDKVKWSGVRTQHSTTPFVDEMYKRLNETIQDYQVIISRWPEYIFVLESAIADVEKATVEALEKQYADVLSPLKENLAPKKLSFKYVQKLTKRSVIPYVVPDELGILLNSMKRMLDVLRPNIEAKFKAWSSCIPDGGNAAPGDRLSEVTVMLRAKFRSYLQAVVEKLVENSKLQKTTMLKKILQDSKESVGESDIRSKMNNLKEQLTNTVNHLHSVCETHVFIALSRGYWDRMGQIVLSFLENRKENRAWYKGSRVAVSILDDTFAAQMQQLLGNSLREQDLEPPRSIMEVRSILCKDPADNKAKSFYY", "length": 1150, "header": "tr|F4JQZ6-1|F4JQZ6_ARATH Computationally mapped isoform of Pesticidal crystal cry8Ba protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQZ7-1" }, "locus": { "chromosome": "4", "start_pos": 12700317, "end_pos": 12708424, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24610.1", "url": "https://www.ensemblgenomes.org/id/AT4G24610.1" }, { "database": "Ensembl Peptide", "id": "AT4G24610.1", "url": "https://www.ensemblgenomes.org/id/AT4G24610.1" } ] } }, { "isoform_ac": "F4JQZ7-1", "url": "https://www.uniprot.org/uniprotkb/F4JQZ7/entry#F4JQZ7-1", "sequence": { "sequence": "MIPNGELRLPALKVREDRVSPSAPIPVTRTLVADTDVTSDDDMSTNSEDVSLDSSPENSRVSSAVGRSYGRNSSYYTYSEVSSSRETLVGAREQTGPRFDGDTEEDESTDSASSTQFSPPPAAGRINDGVSQVEQTHFPKTDRRATVEKFILQEFDETFSSEEVSDIPSAPPFSGAAEESEEIKPATSSVQVSEVKTGDCVESRKTGHFTRPSAASESSGPPDQHPARLPTFHASSRGPWHAVVSYDACVRLCLHAWSTGCMEAPMFLENECALLREAFGLQQLLLQSEEELLAKRSSQAPHEGVAPKPKKNIGKMKVQVRRVKTVMDGPTGCSISSLKPSLIKFEKIRIHFSNMSTRLFSGWRALRKIHVRVPANGSSLPRQSLAYVHASTQYLKQVSGLLKTGVTSLRNNSTSYDIVQETYSCKLRLKSLAEDNAIMMQPGSGESHVFFPDSHGDDLIVEILDPMGKDFGRVLVQLANISEDSAEKLRWWSVFREPEHQHVGKLQLYIDYSASFDDNSHLKCASVAETVAYDLVLEVALKMQRFQQRNLLLYGSWKWLLEEFATYYGISDVYTKLRYLSYVMDVATPTSDCLHLVHDLLTPVIMKGNGKSALSHQENRILNEIKDQIEQILKLVFENYKSLDESSFSGMIDVVNSASGVPAPALIPAVKLYTLLHDVLSPEDQTHLCHYFQAAAKKRSRRHMGETDEFVANNSEPNFWDMSAMSAAYQKMTMACKNVKNEIYTDIEIQNEDILPSFLDLPNLSASIYSTDLCNRLRAFLVACPPSGPSPTVAELVIATADFQRDLSSWNISPIQGGVDAKELFHLYIMIWIQDKRLSLLESCKLDKQVKWSGVRTQHSTTPFVDEMYKRLNETIQDYQVIISRWPEYIFVLESAIADVEKATVEALEKQYADVLSPLKENLAPKKLSFKYVQKLTKRSVIPYVVPDELGILLNSMKRMLDVLRPNIEAKFKAWSSCIPDGGNAAPGDRLSEVTVMLRAKFRSYLQAVVEKLVENSKLQKTTMLKKILQDSKESVGESDIRSKMNNLKEQLTNTVNHLHSVCETHVFIALSRGYWDRMGQIVLSFLENRKENRAWYKGSRVAVSILDDTFAAQMQQLLGNSLREQDLEPPRSIMEVRSILCKDPADNKAKSFYY", "length": 1155, "header": "tr|F4JQZ7-1|F4JQZ7_ARATH Isoform 1 of Pesticidal crystal cry8Ba protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JQZ7-1" }, "locus": { "chromosome": "4", "start_pos": 12700607, "end_pos": 12708109, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G24610.2", "url": "https://www.ensemblgenomes.org/id/AT4G24610.2" }, { "database": "Ensembl Peptide", "id": "AT4G24610.2", "url": "https://www.ensemblgenomes.org/id/AT4G24610.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 792, "start_aa": "Thr", "end_pos": 792, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr792", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 20, "end_pos": 20, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQZ6" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "iPTMnet", "id": "F4JQZ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQZ7" } ], "site_lbl": "Ser20" }, { "start_pos": 213, "end_pos": 213, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQZ6" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "iPTMnet", "id": "F4JQZ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQZ7" } ], "site_lbl": "Ser213" }, { "start_pos": 216, "end_pos": 216, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JQZ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQZ6" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "iPTMnet", "id": "F4JQZ7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JQZ7" } ], "site_lbl": "Ser216" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8V7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8V7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4JQZ6", "url": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR31762", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31762", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31762:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31762:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27823", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27823", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G08630", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G08630", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B8X7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8X7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B8X7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8X7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JIB6", "url": "https://www.uniprot.org/uniprotkb/F4JIB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JIB6-1", "url": "https://www.uniprot.org/uniprotkb/F4JIB6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNTRPIHVRNKSTEPGTPSSPMMTSPLMHRHTRSGSNAGPASNAKKAQTKAAAQRLAAVMSNQTGDEEDSDEDLSFDYNAIGTGSIGLAAGRSHPSRSPVIRNPMARRQQMATPQLVDEDNEDDDFSVDVTSSRPSIGLPGGRAMRPQSPVMTKIAPPRRTQPTNEGNKNDGNDDDDVVSIDYTIGRPSIGLGSGRAMRPQSSMNKTQPQGRPVMAAHQRADEDNEDDETPYVYTSSIPSVGLPGGRAARSRSPLTKNPPLRHPHAVAQPPSNGESDVDYDESYTSGMPSIGLAGGRSMRPRTPLSIRTKEQPQTGLPTSGSRSSLYEDSTESSAMSTLTHPSQTTNQVEQSPSARSAISNKSSQSLSAMDQPPSARSSFNGRPIRTAPLMPSSVPISLKPVTPAFQSNTPTNLRKDKSRFSMDLGSSGNLRELGSQRSTSALQDEVDMLQEENESLLEKLRLAEDKCEEADARAKQLEKQVEILGEGVTMDARLLSRKEAALQQREAALRIASQNHGGKREDVSALHTEAEIAREEAASSLDQLHEVELELNSLKTVTKRLILTQEEMEEVVLKRCWLSRYWGLCVRHGIQPDIAGGKHEYWSSFAPLPLEIVLSAGQRARDGVSQSNNTYGEREKSLQNLQETSGEGNLENMIWVEKGLRELASLKVQEAVAFVMAQNRRNTSSKFFVSDEVKMPMDGQFEAFELSDEEVEDVNFKQAWLSYFWRRAKNHEIESDLVDERLQYWINQGTRSATSQDAVDVERGLMELRKLNIESQLWQKSRKGLDHESNPSHLELSF", "length": 800, "header": "tr|F4JIB6-1|F4JIB6_ARATH Isoform 1 of Fas-binding factor-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4JIB6-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B8X7-1", "url": "https://www.uniprot.org/uniprotkb/F4JIB6/entry#A0A1P8B8X7-1", "sequence": { "sequence": "MRNTRPIHVRNKSTEPGTPSSPMMTSPLMHRHTRSGSNAGPASNAKKAQTKAAAQRLAAVMSNQTGDEEDSDEDLSFDYNAIGTGSIGLAAGRSHPSRSPVIRNPMARRQQMATPQLVDEDNEDDDFSVDVTSSRPSIGLPGGRAMRPQSPVMTKIAPPRRTQPTNEGNKNDGNDDDDVVSIDYTIGRPSIGLGSGRAMRPQSSMNKTQPQGRPVMAAHQRADEDNEDDETPYVYTSSIPSVGLPGGRAARSRSPLTKNPPLRHPHAVAQPPSNGESDVDYDESYTSGMPSIGLAGGRSMRPRTPLSIRTKEQPQTGLPTSGSRSSLYEDSTESSAMSTLTHPSQTTNQVEQSPSARSAISNKSSQSLSAMDQPPSARSSFNGRPIRTAPLMPSSVPISLKPVTPAFQSNTPTNLRKDKRFSMDLGSSGNLRELGSQRSTSALQDEVDMLQEENESLLEKLRLAEDKCEEADARAKQLEKQVEILGEGVTMDARLLSRKEAALQQREAALRIASQNHGGKREDVSALHTEAEIAREEAASSLDQLHEVELELNSLKTVTKRLILTQEEMEEVVLKRCWLSRYWGLCVRHGIQPDIAGGKHEYWSSFAPLPLEIVLSAGQRARDGVSQSNNTYGEREKSLQNLQETSGEGNLENMIWVEKGLRELASLKVQEAVAFVMAQNRRNTSSKFFVSDEVKMPMDGQFEAFELSDEEVEDVNFKQAWLSYFWRRAKNHEIESDLVDERLQYWINQGTRSATSQDAVDVERGLMELRKLNIESQLWQKSRKGLDHESNPSHLELSF", "length": 799, "header": "tr|A0A1P8B8X7-1|F4JIB6_ARATH Computationally mapped isoform of Fas-binding factor-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JIB6-1" }, "locus": { "chromosome": "4", "start_pos": 5506809, "end_pos": 5512046, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G08630.2", "url": "https://www.ensemblgenomes.org/id/AT4G08630.2" }, { "database": "Ensembl Peptide", "id": "AT4G08630.2", "url": "https://www.ensemblgenomes.org/id/AT4G08630.2" } ] } }, { "isoform_ac": "F4JIB6-1", "url": "https://www.uniprot.org/uniprotkb/F4JIB6/entry#F4JIB6-1", "sequence": { "sequence": "MRNTRPIHVRNKSTEPGTPSSPMMTSPLMHRHTRSGSNAGPASNAKKAQTKAAAQRLAAVMSNQTGDEEDSDEDLSFDYNAIGTGSIGLAAGRSHPSRSPVIRNPMARRQQMATPQLVDEDNEDDDFSVDVTSSRPSIGLPGGRAMRPQSPVMTKIAPPRRTQPTNEGNKNDGNDDDDVVSIDYTIGRPSIGLGSGRAMRPQSSMNKTQPQGRPVMAAHQRADEDNEDDETPYVYTSSIPSVGLPGGRAARSRSPLTKNPPLRHPHAVAQPPSNGESDVDYDESYTSGMPSIGLAGGRSMRPRTPLSIRTKEQPQTGLPTSGSRSSLYEDSTESSAMSTLTHPSQTTNQVEQSPSARSAISNKSSQSLSAMDQPPSARSSFNGRPIRTAPLMPSSVPISLKPVTPAFQSNTPTNLRKDKSRFSMDLGSSGNLRELGSQRSTSALQDEVDMLQEENESLLEKLRLAEDKCEEADARAKQLEKQVEILGEGVTMDARLLSRKEAALQQREAALRIASQNHGGKREDVSALHTEAEIAREEAASSLDQLHEVELELNSLKTVTKRLILTQEEMEEVVLKRCWLSRYWGLCVRHGIQPDIAGGKHEYWSSFAPLPLEIVLSAGQRARDGVSQSNNTYGEREKSLQNLQETSGEGNLENMIWVEKGLRELASLKVQEAVAFVMAQNRRNTSSKFFVSDEVKMPMDGQFEAFELSDEEVEDVNFKQAWLSYFWRRAKNHEIESDLVDERLQYWINQGTRSATSQDAVDVERGLMELRKLNIESQLWQKSRKGLDHESNPSHLELSF", "length": 800, "header": "tr|F4JIB6-1|F4JIB6_ARATH Isoform 1 of Fas-binding factor-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=2 CANONICAL=F4JIB6-1" }, "locus": { "chromosome": "4", "start_pos": 5506817, "end_pos": 5512046, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G08630.1", "url": "https://www.ensemblgenomes.org/id/AT4G08630.1" }, { "database": "Ensembl Peptide", "id": "AT4G08630.1", "url": "https://www.ensemblgenomes.org/id/AT4G08630.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8X7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8X7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B8X7", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B8X7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G08630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G08630", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytokinesis by cell plate formation", "id": "GO:0000911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000911", "evidence": [ { "database": "UniProtKB", "id": "F4JIB6", "url": "https://www.uniprot.org/uniprotkb/F4JIB6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JIB6", "url": "https://www.uniprot.org/uniprotkb/F4JIB6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 630, "end_pos": 632, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 684, "end_pos": 686, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JIB6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 800, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JIB6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JIB6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JHQ0-1", "uniprot_ac": "F4JHQ0", "uniprot_id": "F4JHQ0_ARATH", "mass": { "chemical_mass": 122519.0, "monoisotopic_mass": 122519.0 }, "refseq": { "ac": "NP_567201", "name": "COP1-interacting protein 4.1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567201" }, "gene_names": [ { "name": "CIP41", "type": "recommended", "evidence": [ { "id": "F4JHQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0" } ] }, { "name": "A_TM018A10.17", "type": "synonym", "evidence": [ { 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"name": "T18A10.23", "type": "synonym", "evidence": [ { "id": "NP_567201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567201" }, { "id": "F4JHQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0" } ] }, { "name": "T18A10_23", "type": "synonym", "evidence": [ { "id": "NP_567201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567201" }, { "id": "F4JHQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0" } ] } ], "protein_names": [ { "name": "COP1-interacting protein 4.1", "type": "synonym", "evidence": [ { "id": "NP_567201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567201" }, { "id": "F4JHQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JHQ0", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "CIP41", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0", "locus": {} } ], "crossref": [ { "id": "F4JHQ0", "url": "https://alphafold.ebi.ac.uk/entry/F4JHQ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G00930", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G00930", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827980", "url": "https://www.ncbi.nlm.nih.gov/gene/827980", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G00930", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G00930", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KDPTMGD", "url": "https://omabrowser.org/oma/group/KDPTMGD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "NP_567201", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567201", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G00930", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G00930", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1P8B994", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B994", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B994-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B994-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9A5", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9A5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9A9", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9A9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9A9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9C4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9C4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1P8B9C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9C4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JHQ0", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JHQ0-1", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANRETDSSPEIRCVFVETNLDTRLALPVHKDEIISDFKDKVLKEHKQVFPEIGEINISAMKVKRRREFYHFSESLNVCKAFDGISTDWFMYIDAVRVDKGKTLAIMDVDQNLELVEKKEEIPNGKNTKDLTIGEGLETQLVEKKTRKRRIVSSGGKTSRKKSKDQSVVAATTQKVQGEVASQSCAVSPREKLDVVVTGADIESGEMNNISMGENRQTSVADRLLEEKNLTVNSELVDGQTSGVVKEVLDNQTVKGALEKLDDLTGAIEQDLETGEITADIVMIDQEKGSTPVSELVDGQITSQDDERGEGRRLAPSALDNLQTAEVVTNADNQLEASSGMTTGPATEKKRKRTKGSKDHIKQSTAAATTNSRKIVNEINELPGNGDCGDATSKSLPIPERETLQNPLVEAIQKETELGVKTVEDVGTNNMETDTLVSHPENHLVANSELTSTPVTEKKKRQKKSSKDQINLSATAATATTASREIVNEINGAPGNVDRVDATSESCLISQRENLGKENEIGEKIKEDVGSGKAIPSSADNIQTDKRVSYPDNQLEVSSGLTTGPTTEKKKRQKKSSKNDINKSTAATTTSKIIVNEREKVSGSIDCVDATSESIPNSKGEKLSDTVVDARQNGNEMGDILVDKVGSGEATLIGADKIQAASDLHVAGMASTPHAFVQESKTLDHIGKVTDSEHEVPKERVAIDADQAKSVKSTKKKSSRKAKTPAKEDTLVDSGAQNVEPIKVVDGEGHDNVIRNVLDSLQQRNEAEENMEKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSKKKDSLNIVEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIEVTDNTEDINRSMQVQKENAGMGDNIGSSQKDDIVGGANKQDQVTGGTKSKKEKKSLDLHPGGSIDGSMKMKETKGRVQPSSSGTSQLQSMAKNDRSGSKVDLSDAPMKGTVNNKKEAVKKSSKSVTVNKSKMNVNNKEKAVKKISNSVTANKSTTNFFKDAEEDESKTTTSDSTKAPSDSSSDNDSDVTSSMHMKQGNNLSGGTNRLSGSLQDIVRSSKSYKAAKLTASQSQSDAFDDESLAKDVVPDSQAVI", "length": 1133, "header": "tr|F4JHQ0-1|F4JHQ0_ARATH Isoform 1 of COP1-interacting protein 4.1 OS=Arabidopsis thaliana OX=3702 GN=CIP41 PE=1 SV=1 CANONICAL=F4JHQ0-1" }, "isoforms": [ { "isoform_ac": "A0A1P8B994-1", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0/entry#A0A1P8B994-1", "sequence": { "sequence": "MANRETDSSPEIRCVFVETNLDTRLALPVHKDEIISDFKDKVLKEHKQVFPEIGEINISAMKVKRRREFYHFSESLNVCKAFDGISTDWFMYIDAVRVDKGKTLAIMDVDQNLELVEKKEEIPNGKNTKDLTIGEGLETQLVEKKTRKRRIVSSGGKTSRKKSKDQSVVAATTQKVQGEVASQSCAVSPREKLDVVVTGADIESGEMNNISMGENRQTSVADRLLEEKNLTVNSELVDGQTSGVVKEVLDNQTVKGALEKLDDLTGAIEQDLETGEITADIVMIDQEKGSTPVSELVDGQITSQDDERGEGRRLAPSALDNLQTAEVVTNADNQLEASSGMTTGPATEKKRKRTKGSKDHIKQSTAAATTNSRKIVNEINELPGNGDCGDATSKSLPIPERETLQNPLVEAIQKETELGVKTVEDVGTNNMETDTLVSHPENHLVANSELTSTPVTEKKKRQKKSSKDQINLSATAATATTASREIVNEINGAPGNVDRVDATSESCLISQRENLGKENEIGEKIKEDVGSGKAIPSSADNIQTDKRVSYPDNQLEVSSGLTTGPTTEKKKRQKKSSKNDINKSTAATTTSKIIVNEREKVSGSIDCVDATSESIPNSKGEKLSDTVVDARQNGNEMGDILVDKVGSGEATLIGADKIQAASDLHVAGMASTPHAFVQESKTLDHIGKVTDSEHEVPKERVAIDADQAKSVKSTKKKSSRKAKTPAKEDTLVDSGAQNVEPIKVVDGEGHDNVIRNVLDSLQQRNEAEENMEKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSKKKDSLNIVEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIEVTDNTEDINRSMQVQKENAGMGDNIGSSQKDDIVGGANKQDQVTGGTKSKKEKKSLDLHPGGSIDGSMKMKETKGRVQPSSSGTSQLQSMAKNDRSGSKVDLSDAPMKGTVNNKKEAVKKSSKSVTVNKSKMNVNNKEKAVKKISNSVTANKSTTNFFKDAEEDESKTTTSDSTKAPSDSSSDNDSDVTSSMHMKQGNNLSGGTNR", "length": 1086, "header": "tr|A0A1P8B994-1|F4JHQ0_ARATH Computationally mapped isoform of COP1-interacting protein 4.1 OS=Arabidopsis thaliana OX=3702 GN=CIP41 PE=1 SV=1 CANONICAL=F4JHQ0-1" }, "locus": { "chromosome": "4", "start_pos": 396444, "end_pos": 400939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00930.2", "url": "https://www.ensemblgenomes.org/id/AT4G00930.2" }, { "database": "Ensembl Peptide", "id": "AT4G00930.2", "url": "https://www.ensemblgenomes.org/id/AT4G00930.2" } ] } }, { "isoform_ac": "A0A1P8B9A5-1", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0/entry#A0A1P8B9A5-1", "sequence": { "sequence": "MANRETDSSPEIRCVFVETNLDTRLALPVHKDEIISDFKDKVLKEHKQVFPEIGEINISAMKVKRRREFYHFSESLNVCKAFDGISTDWFMYIDAVRVDKGKTLAIMDVDQNLELVEKKEEIPNGKNTKDLTIGEGLETQLVEKKTRKRRIVSSGGKTSRKKSKDQSVVAATTQKVQGEVASQSCAVSPREKLDVVVTGADIESGEMNNISMGENRQTSVADRLLEEKNLTVNSELVDGQTSGVVKEVLDNQTVKGALEKLDDLTGAIEQDLETGEITADIVMIDQEKGSTPVSELVDGQITSQDDERGEGRRLAPSALDNLQTAEVVTNADNQLEASSGMTTGPATEKKRKRTKGSKDHIKQSTAAATTNSRKIVNEINELPGNGDCGDATSKSLPIPERETLQNPLVEAIQKETELGVKTVEDVGTNNMETDTLVSHPENHLVANSELTSTPVTEKKKRQKKSSKDQINLSATAATATTASREIVNEINGAPGNVDRVDATSESCLISQRENLGKENEIGEKIKEDVGSGKAIPSSADNIQTDKRVSYPDNQLEVSSGLTTGPTTEKKKRQKKSSKNDINKSTAATTTSKIIVNEREKVSGSIDCVDATSESIPNSKGEKLSDTVVDARQNGNEMGDILVDKVGSGEATLIGADKIQAASDLHVAGMASTPHAFVQESKTLDHIGKVTDSEHEVPKERVAIDADQAKSVKSTKKKSSRKAKTPAKEDTLVDSGAQNVEPIKVVDGEGHDNVIRNVLDSLQQRNEAEENMEKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSKKKDSLNIVEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIEVTDNTEDINRSMQVQKENAGMGDNIGSSQKDDIVGGANKQDQVTGGTKSKKEKKSLDLHPGGSIDGSMKMKETKGRVQPSSSGTSQLQSMAKNDRSGSKVDLSDAPMKGTVNNKKEAVKKSSKSVTVNKSKMNVNNKEKAVKKISNSVTANKSTTNFFKDAEEDESKTTTSDSTKAPSDSSSDNDSDVTSSMHMKQGILSTQI", "length": 1083, "header": "tr|A0A1P8B9A5-1|F4JHQ0_ARATH Computationally mapped isoform of COP1-interacting protein 4.1 OS=Arabidopsis thaliana OX=3702 GN=CIP41 PE=1 SV=1 CANONICAL=F4JHQ0-1" }, "locus": { "chromosome": "4", "start_pos": 396444, "end_pos": 400939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00930.3", "url": "https://www.ensemblgenomes.org/id/AT4G00930.3" }, { "database": "Ensembl Peptide", "id": "AT4G00930.3", "url": "https://www.ensemblgenomes.org/id/AT4G00930.3" } ] } }, { "isoform_ac": "A0A1P8B9A9-1", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0/entry#A0A1P8B9A9-1", "sequence": { "sequence": "MANRETDSSPEIRCVFVETNLDTRLALPVHKDEIISDFKDKVLKEHKQVFPEIGEINISAMKVKRRREFYHFSESLNVCKAFDGISTDWFMYIDAVRVDKGKTLAIMDVDQNLELVEKKEEIPNGKNTKDLTIGEGLETQLVEKKTRKRRIVSSGGKTSRKKSKDQSVVAATTQKVQGEVASQSCAVSPREKLDVVVTGADIESGEMNNISMGENRQTSVADRLLEEKNLTVNSELVDGQTSGVVKEVLDNQTVKGALEKLDDLTGAIEQDLETGEITADIVMIDQEKGSTPVSELVDGQITSQDDERGEGRRLAPSALDNLQTAEVVTNADNQLEASSGMTTGPATEKKRKRTKGSKDHIKQSTAAATTNSRKIVNEINELPGNGDCGDATSKSLPIPERETLQNPLVEAIQKETELGVKTVEDVGTNNMETDTLVSHPENHLVANSELTSTPVTEKKKRQKKSSKNDINKSTAATTTSKIIVNEREKVSGSIDCVDATSESIPNSKGEKLSDTVVDARQNGNEMGDILVDKVGSGEATLIGADKIQAASDLHVAGMASTPHAFVQESKTLDHIGKVTDSEHEVPKERVAIDADQAKSVKSTKKKSSRKAKTPAKEDTLVDSGAQNVEPIKVVDGEGHDNVIRNVLDSLQQRNEAEENMEKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSKKKDSLNIVEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIEVTDNTEDINRSMQVQKENAGMGDNIGSSQKDDIVGGANKQDQVTGGTKSKKEKKSLDLHPGGSIDGSMKMKETKGRVQPSSSGTSQLQSMAKNDRSGSKVDLSDAPMKGTVNNKKEAVKKSSKSVTVNKSKMNVNNKEKAVKKISNSVTANKSTTNFFKDAEEDESKTTTSDSTKAPSDSSSDNDSDVTSSMHMKQGNNLSGGTNRLSGSLQDIVRSSKSYKAAKLTASQSQSDAFDDESLAKDVVPDSQAVI", "length": 1022, "header": "tr|A0A1P8B9A9-1|F4JHQ0_ARATH Computationally mapped isoform of COP1-interacting protein 4.1 OS=Arabidopsis thaliana OX=3702 GN=CIP41 PE=1 SV=1 CANONICAL=F4JHQ0-1" }, "locus": { "chromosome": "4", "start_pos": 396454, "end_pos": 400994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00930.5", "url": "https://www.ensemblgenomes.org/id/AT4G00930.5" }, { "database": "Ensembl Peptide", "id": "AT4G00930.5", "url": "https://www.ensemblgenomes.org/id/AT4G00930.5" } ] } }, { "isoform_ac": "A0A1P8B9C4-1", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0/entry#A0A1P8B9C4-1", "sequence": { "sequence": "MANRETDSSPEIRCVFVETNLDTRLALPVHKDEIISDFKDKVLKEHKQVFPEIGEINISAMKVKRRREFYHFSESLNVCKAFDGISTDWFMYIDAVRVDKGKTLAIMDVDQNLELVEKKEEIPNGKNTKDLTIGEGLETQLVEKKTRKRRIVSSGGKTSRKKSKDQSVVAATTQKVQGEVASQSCAVSPREKLDVVVTGADIESGEMNNISMGENRQTSVADRLLEEKNLTVNSELVDGQTSGVVKEVLDNQTVKGALEKLDDLTGAIEQDLETGEITADIVMIDQEKGSTPVSELVDGQITSQDDERGEGRRLAPSALDNLQTAEVVTNADNQLEASSGMTTGPATEKKRKRTKGSKDHIKQSTAAATTNSRKIVNEINELPGNGDCGDATSKSLPIPERETLQNPLVEAIQKETELGVKTVEDVGTNNMETDTLVSHPENHLVANSELTSTPVTEKKKRQKKSSKDQINLSATAATATTASREIVNEINGAPGNVDRVDATSESCLISQRENLGKENEIGEKIKEDVGSGKAIPSSADNIQTDKRVSYPDNQLEVSSGLTTGPTTEKKKRQKKSSKNDINKSTAATTTSKIIVNEREKVSGSIDCVDATSESIPNSKGEKLSDTVVDARQNGNEMGDILVDKVGSGEATLIGADKIQAASDLHVAGMASTPHAFVQESKTLDHIGKVTDSEHEVPKERVAIDADQAKSVKSTKKKSSRKAKTPAKEDTLVDSGAQNVEPIKVVDGEGHDNVIRNVLDSLQQRNEAEENMEKSGKKSSKRSKKKDSLNIVEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIEVTDNTEDINRSMQVQKENAGMGDNIGSSQKDDIVGGANKQDQVTGGTKSKKEKKSLDLHPGGSIDGSMKMKETKGRVQPSSSGTSQLQSMAKNDRSGSKVDLSDAPMKGTVNNKKEAVKKSSKSVTVNKSKMNVNNKEKAVKKISNSVTANKSTTNFFKDAEEDESKTTTSDSTKAPSDSSSDNDSDVTSSMHMKQGNNLSGGTNRLSGSLQDIVRSSKSYKAAKLTASQSQSDAFDDESLAKDVVPDSQAVI", "length": 1094, "header": "tr|A0A1P8B9C4-1|F4JHQ0_ARATH Computationally mapped isoform of COP1-interacting protein 4.1 OS=Arabidopsis thaliana OX=3702 GN=CIP41 PE=1 SV=1 CANONICAL=F4JHQ0-1" }, "locus": { "chromosome": "4", "start_pos": 396448, "end_pos": 400949, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00930.4", "url": "https://www.ensemblgenomes.org/id/AT4G00930.4" }, { "database": "Ensembl Peptide", "id": "AT4G00930.4", "url": "https://www.ensemblgenomes.org/id/AT4G00930.4" } ] } }, { "isoform_ac": "F4JHQ0-1", "url": "https://www.uniprot.org/uniprotkb/F4JHQ0/entry#F4JHQ0-1", "sequence": { "sequence": "MANRETDSSPEIRCVFVETNLDTRLALPVHKDEIISDFKDKVLKEHKQVFPEIGEINISAMKVKRRREFYHFSESLNVCKAFDGISTDWFMYIDAVRVDKGKTLAIMDVDQNLELVEKKEEIPNGKNTKDLTIGEGLETQLVEKKTRKRRIVSSGGKTSRKKSKDQSVVAATTQKVQGEVASQSCAVSPREKLDVVVTGADIESGEMNNISMGENRQTSVADRLLEEKNLTVNSELVDGQTSGVVKEVLDNQTVKGALEKLDDLTGAIEQDLETGEITADIVMIDQEKGSTPVSELVDGQITSQDDERGEGRRLAPSALDNLQTAEVVTNADNQLEASSGMTTGPATEKKRKRTKGSKDHIKQSTAAATTNSRKIVNEINELPGNGDCGDATSKSLPIPERETLQNPLVEAIQKETELGVKTVEDVGTNNMETDTLVSHPENHLVANSELTSTPVTEKKKRQKKSSKDQINLSATAATATTASREIVNEINGAPGNVDRVDATSESCLISQRENLGKENEIGEKIKEDVGSGKAIPSSADNIQTDKRVSYPDNQLEVSSGLTTGPTTEKKKRQKKSSKNDINKSTAATTTSKIIVNEREKVSGSIDCVDATSESIPNSKGEKLSDTVVDARQNGNEMGDILVDKVGSGEATLIGADKIQAASDLHVAGMASTPHAFVQESKTLDHIGKVTDSEHEVPKERVAIDADQAKSVKSTKKKSSRKAKTPAKEDTLVDSGAQNVEPIKVVDGEGHDNVIRNVLDSLQQRNEAEENMEKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSKKKDSLNIVEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIEVTDNTEDINRSMQVQKENAGMGDNIGSSQKDDIVGGANKQDQVTGGTKSKKEKKSLDLHPGGSIDGSMKMKETKGRVQPSSSGTSQLQSMAKNDRSGSKVDLSDAPMKGTVNNKKEAVKKSSKSVTVNKSKMNVNNKEKAVKKISNSVTANKSTTNFFKDAEEDESKTTTSDSTKAPSDSSSDNDSDVTSSMHMKQGNNLSGGTNRLSGSLQDIVRSSKSYKAAKLTASQSQSDAFDDESLAKDVVPDSQAVI", "length": 1133, "header": "tr|F4JHQ0-1|F4JHQ0_ARATH Isoform 1 of COP1-interacting protein 4.1 OS=Arabidopsis thaliana OX=3702 GN=CIP41 PE=1 SV=1 CANONICAL=F4JHQ0-1" }, "locus": { "chromosome": "4", "start_pos": 396444, "end_pos": 400939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00930.1", "url": "https://www.ensemblgenomes.org/id/AT4G00930.1" }, { "database": "Ensembl Peptide", "id": "AT4G00930.1", "url": "https://www.ensemblgenomes.org/id/AT4G00930.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1090, "end_pos": 1090, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHQ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHQ0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1090" }, { "start_pos": 1111, "end_pos": 1111, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHQ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHQ0" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1111" }, { "start_pos": 1113, "end_pos": 1113, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHQ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHQ0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1113" }, { "start_pos": 182, "end_pos": 182, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHQ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHQ0" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser182" }, { "start_pos": 184, "end_pos": 184, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHQ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHQ0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser184" }, { "start_pos": 188, "end_pos": 188, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHQ0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHQ0" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": 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"url": "https://www.uniprot.org/uniprotkb/F4JL70" } ] }, { "name": "F7K2_7", "type": "synonym", "evidence": [ { "id": "F4JL70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JL70" } ] } ], "protein_names": [ { "name": "U4/U6.U5 tri-snRNP-associated-like protein", "type": "synonym", "evidence": [ { "id": "F4JL70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JL70/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JL70", "url": "https://www.uniprot.org/uniprotkb/F4JL70" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JL70", "locus": {} } ], "crossref": [ { "id": "F4JL70", "url": 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J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A0A1P8B9D4", "url": "https://www.uniprot.org/uniprotkb/A0A1P8B9D4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J5Q3-1", "uniprot_ac": "F4J5Q3", "uniprot_id": "F4J5Q3_ARATH", "mass": { "chemical_mass": 45537.0, "monoisotopic_mass": 45537.0 }, "refseq": { "ac": "NP_001078271", "name": "5'-3' exonuclease family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078271" }, "gene_names": [ { "name": "OEX1", "type": "recommended", "evidence": [ { "id": "F4J5Q3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3" } ] } ], "protein_names": [ { "name": "5'-3' exonuclease family protein", "type": "synonym", "evidence": [ { "id": "NP_001078271", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078271" }, { "id": "F4J5Q3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J5Q3", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "OEX1", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3", "locus": {} } ], "crossref": [ { "id": "F4J5Q3", "url": "https://alphafold.ebi.ac.uk/entry/F4J5Q3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G52050", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G52050", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd09859", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09859", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09898", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09898", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "824368", "url": "https://www.ncbi.nlm.nih.gov/gene/824368", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008918", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008918", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020046", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020046", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G52050", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G52050", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RAFYLWN", "url": "https://omabrowser.org/oma/group/RAFYLWN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR42646", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42646", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42646:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42646:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01367", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01367", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02739", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02739", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001078271", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078271", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G52050", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G52050", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LTI3", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTI4", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LTI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MQG8", "url": "https://www.uniprot.org/uniprotkb/A8MQG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MQG8-1", "url": "https://www.uniprot.org/uniprotkb/A8MQG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5Q0", "url": "https://www.uniprot.org/uniprotkb/F4J5Q0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5Q0-1", "url": "https://www.uniprot.org/uniprotkb/F4J5Q0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5Q3", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5Q3-1", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLHLYHHSRFLWRNLCFPRSVGNLCNRNCSLISPSLARSAKYYCSSVAVSEFSNEAASGSTLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVFDHDGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNGEKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEAVP", "length": 413, "header": "tr|F4J5Q3-1|F4J5Q3_ARATH Isoform 1 of 5'-3' exonuclease family protein OS=Arabidopsis thaliana OX=3702 GN=OEX1 PE=1 SV=1 CANONICAL=F4J5Q3-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LTI3-1", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3/entry#A0A1I9LTI3-1", "sequence": { "sequence": "MTLHLYHHSRFLWRNLCFPRSVGNLCNRNCSLISPSLARSAKYYCSSVAVSEFSNEAASGSTLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVFDHDGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNGEKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEAVP", "length": 407, "header": "tr|A0A1I9LTI3-1|F4J5Q3_ARATH Computationally mapped isoform of 5'-3' exonuclease family protein OS=Arabidopsis thaliana OX=3702 GN=OEX1 PE=1 SV=1 CANONICAL=F4J5Q3-1" }, "locus": { "chromosome": "3", "start_pos": 19304964, "end_pos": 19309621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52050.7", "url": "https://www.ensemblgenomes.org/id/AT3G52050.7" }, { "database": "Ensembl Peptide", "id": "AT3G52050.7", "url": "https://www.ensemblgenomes.org/id/AT3G52050.7" } ] } }, { "isoform_ac": "A0A1I9LTI4-1", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3/entry#A0A1I9LTI4-1", "sequence": { "sequence": "MVNVFPPLRLNALLLHDSTFSDVMTLHLYHHSRFLWRNLCFPRSVGNLCNRNCSLISPSLARSAKYYCSSVAVSEFSNEAASGSTLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVFDHDGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNGEKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEAVP", "length": 430, "header": "tr|A0A1I9LTI4-1|F4J5Q3_ARATH Computationally mapped isoform of 5'-3' exonuclease family protein OS=Arabidopsis thaliana OX=3702 GN=OEX1 PE=1 SV=1 CANONICAL=F4J5Q3-1" }, "locus": { "chromosome": "3", "start_pos": 19304886, "end_pos": 19309651, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52050.6", "url": "https://www.ensemblgenomes.org/id/AT3G52050.6" }, { "database": "Ensembl Peptide", "id": "AT3G52050.6", "url": "https://www.ensemblgenomes.org/id/AT3G52050.6" } ] } }, { "isoform_ac": "A8MQG8-1", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3/entry#A8MQG8-1", "sequence": { "sequence": "MVNVFPPLRLNALLLHDSTFSDVMTLHLYHHSRFLWRNLCFPRSVGNLCNRNCSLISPSLARSAKYYCSSVAVSEFSNEAASGSTLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNGEKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEAVP", "length": 448, "header": "tr|A8MQG8-1|F4J5Q3_ARATH Computationally mapped isoform of 5'-3' exonuclease family protein OS=Arabidopsis thaliana OX=3702 GN=OEX1 PE=1 SV=1 CANONICAL=F4J5Q3-1" }, "locus": { "chromosome": "3", "start_pos": 19304886, "end_pos": 19309651, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52050.3", "url": "https://www.ensemblgenomes.org/id/AT3G52050.3" }, { "database": "Ensembl Peptide", "id": "AT3G52050.3", "url": "https://www.ensemblgenomes.org/id/AT3G52050.3" } ] } }, { "isoform_ac": "F4J5Q0-1", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3/entry#F4J5Q0-1", "sequence": { "sequence": "MVNVFPPLRLNALLLHDSTFSDVMTLHLYHHSRFLWRNLCFPRSVGNLCNRNCSLISPSLARSAKYYCSSVAVSEFSNEAASGSTLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVFDHDGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEIKEGKIKEVSEQVLQRLGKLVLL", "length": 365, "header": "tr|F4J5Q0-1|F4J5Q0_ARATH Computationally mapped isoform of 5'-3' exonuclease family protein OS=Arabidopsis thaliana OX=3702 GN=OEX1 PE=1 SV=1 CANONICAL=F4J5Q3-1" }, "locus": { "chromosome": "3", "start_pos": 19304993, "end_pos": 19309580, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52050.5", "url": "https://www.ensemblgenomes.org/id/AT3G52050.5" }, { "database": "Ensembl Peptide", "id": "AT3G52050.5", "url": "https://www.ensemblgenomes.org/id/AT3G52050.5" } ] } }, { "isoform_ac": "F4J5Q3-1", "url": "https://www.uniprot.org/uniprotkb/F4J5Q3/entry#F4J5Q3-1", "sequence": { "sequence": "MTLHLYHHSRFLWRNLCFPRSVGNLCNRNCSLISPSLARSAKYYCSSVAVSEFSNEAASGSTLTSISEDVTPQSIKYPFKSEERVASTAASSNGRVMLIDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLKFLPSHVAVVFDHDGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNGEKLSSLLIAIADYAEGFSADPVIRRAFRLWEKLEAVP", "length": 413, "header": "tr|F4J5Q3-1|F4J5Q3_ARATH Isoform 1 of 5'-3' exonuclease family protein OS=Arabidopsis thaliana OX=3702 GN=OEX1 PE=1 SV=1 CANONICAL=F4J5Q3-1" }, "locus": { "chromosome": "3", "start_pos": 19304991, "end_pos": 19309574, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52050.4", "url": "https://www.ensemblgenomes.org/id/AT3G52050.4" }, { "database": "Ensembl Peptide", "id": "AT3G52050.4", "url": "https://www.ensemblgenomes.org/id/AT3G52050.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A8MQG8", "url": "https://www.uniprot.org/uniprotkb/A8MQG8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A8MQG8", "url": "https://www.uniprot.org/uniprotkb/A8MQG8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G52050", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G52050", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, 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"Protein" ] } ], "sequence": { "sequence": "MLSTERTKFRSMEPATSSPLPRDTSEQDPALAQSEDQSQGRLRVSAYDLMVVDSDLEGLDQRKEEMRNIFDDIQDKASLILQFSLKWEEIDDRFGFLKQRAMEKEVSVRNQILELEKKEERLRLVEERERKIEASFSTLQEKGNESDLILLMEANVMRLVLQMQFEQVVVAQLNAQENFLGSLHDSMMKKHEELMTELEARKNEVALISKTIDAKTCDLDMKVKDFDLKQTTESERMRKETELMETSLKQLEARENELRLLNETIQGKSMELEKKEVNFQLKHEAAARETEVKNKFLELKEKKLEEREQHLELKQRKKEKPAIRAETRKRSRLEYESPLSAEKGRYAETLIRPGKKQVQKREAHEIIYIDEDEPFNCPDPDFHDFNNTMSSFAVGQVWALYDPVDDMPRYYAEIRKVLQPQLSLRVTWLESLQTTEEPIPACGRFEHGKSETSSHLMFSHEMYHTIRGQYVTINPRKGETWALFGDWTKTWKSHSEQQKTPYSYDFVEVVTEFDSDRGIGVAYLGRVEGFTSVYERAAQNGLVEIMISCDEMLRFSHRVPSFKMTGDEKEGVPAGSFELDPAAVPRVYLKDAKVKEEKMEPIVLV", "length": 605, "header": "tr|F4J631-1|F4J631_ARATH Isoform 1 of Trichohyalin, putative (DUF3444) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J631-1" }, "isoforms": [ { "isoform_ac": "A8MQS7-1", "url": "https://www.uniprot.org/uniprotkb/F4J631/entry#A8MQS7-1", "sequence": { "sequence": 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"https://www.ensemblgenomes.org/id/AT3G04960.2" } ] } }, { "isoform_ac": "A8MR58-1", "url": "https://www.uniprot.org/uniprotkb/F4J631/entry#A8MR58-1", "sequence": { "sequence": "MVVDSDLEGLDQRKEEMRNIFDDIQDKASLILQFSLKWEEIDDRFGFLKQRAMEKEVSVRNQILELEKKEERLRLVEERERKIEASFSTLQEKGNESDLILLMEANVMRLVLQMQFEQVVVAQLNAQENFLGSLHDSMMKKHEELMTELEARKNEVALISKTIDAKTCDLDMKVKDFDLKQTTESERMRKETELMETSLKQLEARENELRLLNETIQGKSMELEKKEVNFQLKHEAAARETEVKNKFLELKEKKLEEREQHLELKQRKKEKPAIRAETRKRSRLEYESPLSAEKGRYAETLIRPGKKQVQKREAHEIIYIDEDEPFNCPDPDFHDFNNTMSSFAVGQVWALYDPVDDMPRYYAEIRKVLQPQLSLRVTWLESLQTTEEPIPACGRFEHGKSETSSHLMFSHEMYHTIRGQYVTINPRKGETWALFGDWTKTWKSHSEQQKTPYSYDFVEVVTEFDSDRGIGVAYLGRVEGFTSVYERAAQNGLVEIMISCDEMLRFSHRVPSFKMTGDEKEGVPAGSFELDPAAVPRVYLKDAKVKEEKMEPIVLV", "length": 556, "header": "tr|A8MR58-1|F4J631_ARATH Computationally mapped isoform of Trichohyalin, putative (DUF3444) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J631-1" }, "locus": { "chromosome": "3", "start_pos": 1373705, "end_pos": 1375989, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G04960.1", "url": "https://www.ensemblgenomes.org/id/AT3G04960.1" }, { "database": "Ensembl Peptide", "id": "AT3G04960.1", "url": "https://www.ensemblgenomes.org/id/AT3G04960.1" } ] } }, { "isoform_ac": "F4J631-1", "url": "https://www.uniprot.org/uniprotkb/F4J631/entry#F4J631-1", "sequence": { "sequence": "MLSTERTKFRSMEPATSSPLPRDTSEQDPALAQSEDQSQGRLRVSAYDLMVVDSDLEGLDQRKEEMRNIFDDIQDKASLILQFSLKWEEIDDRFGFLKQRAMEKEVSVRNQILELEKKEERLRLVEERERKIEASFSTLQEKGNESDLILLMEANVMRLVLQMQFEQVVVAQLNAQENFLGSLHDSMMKKHEELMTELEARKNEVALISKTIDAKTCDLDMKVKDFDLKQTTESERMRKETELMETSLKQLEARENELRLLNETIQGKSMELEKKEVNFQLKHEAAARETEVKNKFLELKEKKLEEREQHLELKQRKKEKPAIRAETRKRSRLEYESPLSAEKGRYAETLIRPGKKQVQKREAHEIIYIDEDEPFNCPDPDFHDFNNTMSSFAVGQVWALYDPVDDMPRYYAEIRKVLQPQLSLRVTWLESLQTTEEPIPACGRFEHGKSETSSHLMFSHEMYHTIRGQYVTINPRKGETWALFGDWTKTWKSHSEQQKTPYSYDFVEVVTEFDSDRGIGVAYLGRVEGFTSVYERAAQNGLVEIMISCDEMLRFSHRVPSFKMTGDEKEGVPAGSFELDPAAVPRVYLKDAKVKEEKMEPIVLV", "length": 605, "header": "tr|F4J631-1|F4J631_ARATH Isoform 1 of Trichohyalin, putative (DUF3444) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J631-1" }, "locus": { "chromosome": "3", "start_pos": 1373688, "end_pos": 1375989, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G04960.3", "url": "https://www.ensemblgenomes.org/id/AT3G04960.3" }, { "database": "Ensembl Peptide", "id": "AT3G04960.3", "url": "https://www.ensemblgenomes.org/id/AT3G04960.3" } ] } }, { "isoform_ac": "F4J632-1", "url": "https://www.uniprot.org/uniprotkb/F4J631/entry#F4J632-1", "sequence": { "sequence": "MLSTERTKFRSMEPATSSPLPRDTSEQDPALAQSEDQSQGRFGFLKQRAMEKEVSVRNQILELEKKEERLRLVEERERKIEASFSTLQEKGNESDLILLMEANVMRLVLQMQFEQVVVAQLNAQENFLGSLHDSMMKKHEELMTELEARKNEVALISKTIDAKTCDLDMKVKDFDLKQTTESERMRKETELMETSLKQLEARENELRLLNETIQGKSMELEKKEVNFQLKHEAAARETEVKNKFLELKEKKLEEREQHLELKQRKKEKPAIRAETRKRSRLEYESPLSAEKGRYAETLIRPGKKQVQKREAHEIIYIDEDEPFNCPDPDFHDFNNTMSSFAVGQVWALYDPVDDMPRYYAEIRKVLQPQLSLRVTWLESLQTTEEPIPACGRFEHGKSETSSHLMFSHEMYHTIRGQYVTINPRKGETWALFGDWTKTWKSHSEQQKTPYSYDFVEVVTEFDSDRGIGVAYLGRVEGFTSVYERAAQNGLVEIMISCDEMLRFSHRVPSFKMTGDEKEGVPAGSFELDPAAVPRVYLKDAKVKEEKMEPIVLV", "length": 553, "header": "tr|F4J632-1|F4J632_ARATH Computationally mapped isoform of Trichohyalin, putative (DUF3444) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J631-1" }, "locus": { "chromosome": "3", "start_pos": 1373703, "end_pos": 1375892, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G04960.4", "url": "https://www.ensemblgenomes.org/id/AT3G04960.4" }, { "database": "Ensembl Peptide", "id": "AT3G04960.4", "url": "https://www.ensemblgenomes.org/id/AT3G04960.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro 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"MDLTFDHSFVKVNGITMHVAEKSPSVAGNGAIRPPVILFLHGFPELWYTWRHQMVALSSLGYRTIAPDLRGYGDTDAPESVDAYTSLHVVGDLIGLIDAVVGDREKVFVVGHDWGAIIAWHLCLFRPDRVKALVNMSVVFDPWNPKRKPTSTFKAFYGDDYYICRFQLLEILIKIHVCIVGKRYDDSVSLPSWLTDSDVKYYVSKYEKNGFTGPVNYYRNMDRTWELMGSLSNAKVKVPVKFIIGDQDLTYHIPGSKKYIHDGRFKSHVPLLDEVVVIKGVGHFIHEERPDEISKHIHDYFLTF", "length": 304, "header": "tr|F4JKY3-1|F4JKY3_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKY3-1" }, "isoforms": [ { "isoform_ac": "A8MR06-1", "url": "https://www.uniprot.org/uniprotkb/F4JKY3/entry#A8MR06-1", "sequence": { "sequence": "MDLTFDHSFVKVNGITMHVAEKSPSVAGNGAIRPPVILFLHGFPELWYTWRHQMVALSSLGYRTIAPDLRGYGDTDAPESVDAYTSLHVVGDLIGLIDAVVGDREKVFVVGHDWGAIIAWHLCLFRPDRVKALVNMSVVFDPWNPKRKPTSTFKAFYGDDYYICRFQEYGEIESEFAKVLNIS", "length": 183, "header": "tr|A8MR06-1|F4JKY3_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JKY3-1" }, 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A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "A8MR06", "url": "https://www.uniprot.org/uniprotkb/A8MR06" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A8MR06", "url": "https://www.uniprot.org/uniprotkb/A8MR06" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G15955", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G15955", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F4JKY3", "url": "https://www.uniprot.org/uniprotkb/F4JKY3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JKY3", "url": "https://www.uniprot.org/uniprotkb/F4JKY3" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JKY3", "url": "https://www.uniprot.org/uniprotkb/F4JKY3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4JKY3", "url": "https://www.uniprot.org/uniprotkb/F4JKY3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JKY3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 304, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JKY3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JKY3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JKY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JKY3" }, { "id": "PF00561", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 290, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JR77-1", "uniprot_ac": "F4JR77", "uniprot_id": "F4JR77_ARATH", "mass": { "chemical_mass": 64571.0, "monoisotopic_mass": 64571.0 }, "refseq": { "ac": "NP_001190939", "name": "CLK4-associating serine/arginine-rich protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190939" }, "gene_names": [ { "name": "AP22.35", "type": "recommended", "evidence": [ { "id": "F4JR77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JR77" } ] }, { "name": "AP22.35", "type": "synonym", "evidence": [ { "id": "NP_001190939", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190939" } ] }, { "name": "AP22_35", "type": "synonym", "evidence": [ { "id": "NP_001190939", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190939" }, { "id": "F4JR77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JR77" } ] } ], "protein_names": [ { "name": "CLK4-associating serine/arginine-rich protein", "type": "synonym", "evidence": [ { "id": "NP_001190939", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190939" }, { "id": "F4JR77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JR77/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JR77", "url": "https://www.uniprot.org/uniprotkb/F4JR77" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "AP22.35", "url": "https://www.uniprot.org/uniprotkb/F4JR77", "locus": {} } ], "crossref": [ { "id": "F4JR77", "url": "https://alphafold.ebi.ac.uk/entry/F4JR77", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G36980", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G36980", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "829852", "url": "https://www.ncbi.nlm.nih.gov/gene/829852", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "A8MS51", "url": "https://www.ebi.ac.uk/intact/interactors/id:A8MS51*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR019147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G36980", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G36980", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YSECAPV", "url": "https://omabrowser.org/oma/group/YSECAPV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13161:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13161:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09750", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09750", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190939", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190939", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G36980", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G36980", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A8MS51", "url": "https://www.uniprot.org/uniprotkb/A8MS51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A8MS51-1", "url": "https://www.uniprot.org/uniprotkb/A8MS51-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JR75", "url": "https://www.uniprot.org/uniprotkb/F4JR75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JR75-1", "url": "https://www.uniprot.org/uniprotkb/F4JR75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JR77", "url": "https://www.uniprot.org/uniprotkb/F4JR77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JR77-1", "url": "https://www.uniprot.org/uniprotkb/F4JR77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JR78", "url": "https://www.uniprot.org/uniprotkb/F4JR78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JR78-1", "url": "https://www.uniprot.org/uniprotkb/F4JR78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQAVGSRYRVFRDDGLYQATEDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTEEEEELEEFVNFERYRDLIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGKDNSLDADEDDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGWLVYMDKKAKEEEKRQKELIKGDPSIKKLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSPTYEAYPRSRRSRSRSRSYSPSYSRRNGRGDHSDEISKPKIEYITEFGGGSGDMRSPKFEGYSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAETSRLSRNRQRSRSRSISRSPPPRLRHRRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRSRRRSPSYSRSPRRRSSRSRH", "length": 556, "header": "tr|F4JR77-1|F4JR77_ARATH Isoform 1 of CLK4-associating serine/arginine-rich protein OS=Arabidopsis thaliana OX=3702 GN=AP22.35 PE=1 SV=1 CANONICAL=F4JR77-1" }, "isoforms": [ { "isoform_ac": "A8MS51-1", "url": "https://www.uniprot.org/uniprotkb/F4JR77/entry#A8MS51-1", "sequence": { "sequence": "MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQAVGSRYRVFRDDGLYQATEDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTEEEEELEEFVNFERYRDLIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGKDNSLDADEDDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGWLVYMDKKAKEEEKRQKELIKGDPSIKKLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSPTYEAYPRSRRSRSRSRSYSPSYSRRNGRGDHSDEISKPKIEYITEFGGGSGDMRSPKFEGYSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAETSRLSRNRQRSRSRSISRSPPPRRHRRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRSRRRSPSYSRSPRRRSSRSRH", "length": 555, "header": "tr|A8MS51-1|F4JR77_ARATH Computationally mapped isoform of CLK4-associating serine/arginine-rich protein OS=Arabidopsis thaliana OX=3702 GN=AP22.35 PE=1 SV=2 CANONICAL=F4JR77-1" }, "locus": { "chromosome": "4", "start_pos": 17433642, "end_pos": 17437069, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G36980.1", "url": "https://www.ensemblgenomes.org/id/AT4G36980.1" }, { "database": "Ensembl Peptide", "id": "AT4G36980.1", "url": "https://www.ensemblgenomes.org/id/AT4G36980.1" } ] } }, { "isoform_ac": "F4JR75-1", "url": "https://www.uniprot.org/uniprotkb/F4JR77/entry#F4JR75-1", "sequence": { "sequence": "MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQAVGSRYRVFRDDGLYQATEDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTEEEEELEEFVNFERYRDLIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGKDNSLDADEDDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGWLVYMDKKAKEEEKRQKELIKGDPSIKLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSPTYEAYPRSRRSRSRSRSYSPSYSRRNGRGDHSDEISKPKIEYITEFGGGSGDMRSPKFEGYSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAETSRLSRNRQRSRSRSISRSPPPRRHRRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRSRRRSPSYSRSPRRRSSRSRH", "length": 554, "header": "tr|F4JR75-1|F4JR75_ARATH Computationally mapped isoform of CLK4-associating serine/arginine-rich protein OS=Arabidopsis thaliana OX=3702 GN=AP22.35 PE=1 SV=1 CANONICAL=F4JR77-1" }, "locus": { "chromosome": "4", "start_pos": 17433601, "end_pos": 17437065, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G36980.3", "url": "https://www.ensemblgenomes.org/id/AT4G36980.3" }, { "database": "Ensembl Peptide", "id": "AT4G36980.3", "url": "https://www.ensemblgenomes.org/id/AT4G36980.3" } ] } }, { "isoform_ac": "F4JR77-1", "url": "https://www.uniprot.org/uniprotkb/F4JR77/entry#F4JR77-1", "sequence": { "sequence": "MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQAVGSRYRVFRDDGLYQATEDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTEEEEELEEFVNFERYRDLIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGKDNSLDADEDDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGWLVYMDKKAKEEEKRQKELIKGDPSIKKLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSPTYEAYPRSRRSRSRSRSYSPSYSRRNGRGDHSDEISKPKIEYITEFGGGSGDMRSPKFEGYSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAETSRLSRNRQRSRSRSISRSPPPRLRHRRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRSRRRSPSYSRSPRRRSSRSRH", "length": 556, "header": "tr|F4JR77-1|F4JR77_ARATH Isoform 1 of CLK4-associating serine/arginine-rich protein OS=Arabidopsis thaliana OX=3702 GN=AP22.35 PE=1 SV=1 CANONICAL=F4JR77-1" }, "locus": { "chromosome": "4", "start_pos": 17433601, "end_pos": 17437065, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G36980.4", "url": "https://www.ensemblgenomes.org/id/AT4G36980.4" }, { "database": "Ensembl Peptide", "id": "AT4G36980.4", "url": "https://www.ensemblgenomes.org/id/AT4G36980.4" } ] } }, { "isoform_ac": "F4JR78-1", "url": "https://www.uniprot.org/uniprotkb/F4JR77/entry#F4JR78-1", "sequence": { "sequence": "MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQAVGSRYRVFRDDGLYQATEDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTEEEEELEEFVNFERYRDLIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGKDNSLDADEDDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGWLVYMDKKAKEEEKRQKELIKGDPSIKKLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSPTYEAYPRSRRSRSRSRSYSPSYSRRNGRGDHSDEISKPKIEYITEFGGGSGDMRSPKFEGYSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKREQERQRLEKLAETSRLSRNRQRSRSRSISRSPPPRLLIKLSFLLRD", "length": 507, "header": "tr|F4JR78-1|F4JR78_ARATH Computationally mapped isoform of CLK4-associating serine/arginine-rich protein OS=Arabidopsis thaliana OX=3702 GN=AP22.35 PE=1 SV=1 CANONICAL=F4JR77-1" }, "locus": { "chromosome": "4", "start_pos": 17433642, "end_pos": 17437217, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G36980.2", "url": "https://www.ensemblgenomes.org/id/AT4G36980.2" }, { "database": "Ensembl Peptide", "id": "AT4G36980.2", "url": "https://www.ensemblgenomes.org/id/AT4G36980.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 291, "end_pos": 291, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JR77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JR77" }, { "database": "iPTMnet", "id": "F4JR78", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JR78" }, { "database": "PubMed", "id": "23572148", "url": 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"glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CFC7-1", "protein_name": "CLK4-associating serine/arginine rich protein", "gene_name": "Clasrp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAAESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPLLTTISPEQESDERKCNYERYRGLVQNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEVEKVAEKPEEEESPAEEESNSDEDEVIPDIDVEVDVDELNQEQVADLNKQATTYGMADGDFVRMLRKDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPSPGREEKITFITSFGGSDEEAAAAAAAAAASGAAPGKPPAPPQTGGPAPGRNASTRRRSSSSSASRTSSSRSSSRSSSRSRRGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSDGGSRDGHRYSRSPARRGGYVPRRRSRSRSRSGDRYKRGARGPRHHSSSHSRSSWSLSPSRSRSVTRSGSRSQSRSRSRSQSHSQSQSHSPSPPREKLTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQERLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRSPHYRH", "length": 668 }, "evidence": [ { "id": "F4JR77", "url": "https://omabrowser.org/oma/group/F4JR77/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N2M8-1", "protein_name": "CLK4-associating serine/arginine rich protein", "gene_name": "CLASRP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAAESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPLLTTISPEQESDERKCNYERYRGLVQNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEVEKAAEKPEEEESAAEEESNSDEDEVIPDIDVEVDVDELNQEQVADLNKQATTYGMADGDFVRMLRKDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRSPHYRH", "length": 674 }, "evidence": [ { "id": "F4JR77", "url": "https://omabrowser.org/oma/group/F4JR77/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F4JR77", "url": "https://www.uniprot.org/uniprotkb/F4JR77" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F4JR77", "url": "https://www.uniprot.org/uniprotkb/F4JR77" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JR77", "url": "https://www.uniprot.org/uniprotkb/F4JR77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JR77-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 556, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JR77-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JR77" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JR77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JR77" }, { "id": "SM01141", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01141" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Suppressor of white apricot N-terminal", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 178, "start_aa": "Gln", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 291, 294, 296, 327, 345, 350, 356, 357, 361, 373 ], "sequon_annotation_sites": [ { "start_pos": 206, "end_pos": 208 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 10 }, { "field": "total_sites", "count": 10 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J6G5-1", "uniprot_ac": "F4J6G5", "uniprot_id": "F4J6G5_ARATH", "mass": { "chemical_mass": 114660.0, "monoisotopic_mass": 114660.0 }, "refseq": { "ac": "NP_188419", "name": "Outer arm dynein light chain 1 protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188419" }, "gene_names": [], "protein_names": [ { "name": "Outer arm dynein light chain 1 protein", "type": "synonym", "evidence": [ { "id": "NP_188419", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188419" }, { "id": "F4J6G5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6G5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J6G5", "url": "https://www.uniprot.org/uniprotkb/F4J6G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J6G5", "locus": {} } ], "crossref": [ { "id": "F4J6G5", "url": "https://alphafold.ebi.ac.uk/entry/F4J6G5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G17920", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G17920", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "819843", "url": "https://www.ncbi.nlm.nih.gov/gene/819843", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4J6G5", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4J6G5*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G17920", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G17920", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR15454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15454:SF72", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15454:SF72", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12799", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12799", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_188419", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188419", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G17920", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G17920", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LPK3", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LPK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H486", "url": "https://www.uniprot.org/uniprotkb/B3H486", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H486-1", "url": "https://www.uniprot.org/uniprotkb/B3H486-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6G5", "url": "https://www.uniprot.org/uniprotkb/F4J6G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6G5-1", "url": "https://www.uniprot.org/uniprotkb/F4J6G5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIVTGDRYLENLQRFLDEKADLLIDGTDVLKLNPAGLHYVHLRLESLRELELMLSGAPVDYLRAYVSDIGDFRALEQLRRILRLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLELRGCDLSTSSAKGLLELRHTLEKLICHNSTDALRHVFASRIAEIKDSPQWNKLAFISCACNRLVLMDESLQLLPAVESLDLSRNKFAKVDNLRRCNKLKHLDLGFNQLRKISHLSEVSCHLVKLVLRNNALTTLRGIENLKSLEGLDVSFNLISDFSELEFLGSLSFLTDLWLEGNPICCARWYRAHVLSYVYLPNDLKLDGKHIGNREFWKRQVVVTRRKSQPASYGFYSPARDEADDEGSFTRKKTKIYRLASIDSEEESTYVNSDQESASCEPETQSKEENIKSDHEADVFGLICKVEQLKKERSVLWLREFKEWIDHPSEDFVDVSKNGSSTDSEQKYYMKNRNGPKHHGETMRYTPGPLPSFQITDLNQKHQAFFLDGKPDENGNMSTLDASQDMTGSFSPSSPPHYQKDVLHRRQNLVEEILQISADSYSVASSDSSCSENENYDSEQSNPEQDTLKDHLSGNRGEDTSLLDSQPEKSSIIKSWKIEDSFKAKTTNFLSGLHKSELASGVNQIYRWFDKKQSKRKPKKRNVSPLEEYSFIKKGETSHRSDADIIDSCEDEYISDHFQEGSLTTGCNSKRSTRFLETEKSLEGMGGLVEEFFTTTLSDSSNDETCRIYVSCDCILQQESTYKQREVVLLLSSQEKLYVLLVGVSTDLQESSLSLLCSHTIGDIRDVSVGLGLQVVRLRFREDAEYIFMTASIEKTTVLLNIIKFLDYQVTESKFSLKSLENVQVELFEKEICSGLKLSIFQYIVLHFQSSTFGEVSWLPRSLFVAGGHLFICNEDFRQLSFLPTDDASSSPYFSLDSSCSISDIFEMVVESRGSSCLSLKVKQKDSTFQSSQKRTVNSVTWKLKLLSPECVPKFVALVNGLHPDSTEFPLFVRHLGER", "length": 1010, "header": "tr|F4J6G5-1|F4J6G5_ARATH Isoform 1 of Outer arm dynein light chain 1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J6G5-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LPK3-1", "url": "https://www.uniprot.org/uniprotkb/F4J6G5/entry#A0A1I9LPK3-1", "sequence": { "sequence": "MDESLQLLPAVESLDLSRNKFAKVDNLRRCNKLKHLDLGFNQLRKISHLSEVSCHLVKLVLRNNALTTLRGIENLKSLEGLDVSFNLISDFSELEFLGSLSFLTDLWLEGNPICCARWYRAHVLSYVYLPNDLKLDGKHIGNREFWKRQVVVTRRKSQPASYGFYSPARDEADDEGSFTRKKTKIYRLASIDSEEESTYVNSDQESASCEPETQSKEENIKSDHEADVFGLICKVEQLKKERSVLWLREFKEWIDHPSEDFVDVSKNGSSTDSEQKYYMKNRNGPKHHGETMRYTPGPLPSFQITDLNQKHQAFFLDGKPDENGNMSTLDASQDMTGSFSPSSPPHYQKDVLHRRQNLVEEILQISADSYSVASSDSSCSENENYDSEQSNPEQDTLKDHLSGNRGEDTSLLDSQPEKSSIIKSWKIEDSFKAKTTNFLSGLHKSELASGVNQIYRWFDKKQSKRKPKKRNVSPLEEYSFIKKGETSHRSDADIIDSCEDEYISDHFQEGSLTTGCNSKRSTRFLETEKSLEGMGGLVEEFFTTTLSDSSNDETCRIYVSCDCILQQESTYKQREVVLLLSSQEKLYVLLVGVSTDLQESSLSLLCSHTIGDIRDVSVGLGLQVVRLRFREDAEYIFMTASIEKTTVLLNIIKFLDYQVTESKFSLKSLENVQVELFEKEICSGLKLSIFQYIVLHFQSSTFGEVSWLPRSLFVAGGHLFICNEDFRQLSFLPTDDASSSPYFSLDSSCSISDIFEMVVESRGSSCLSLKVKQKDSTFQSSQKRTVNSVTWKLKLLSPECVPKFVALVNGLHPDSTEFPLFVRHLGER", "length": 828, "header": "tr|A0A1I9LPK3-1|F4J6G5_ARATH Computationally mapped isoform of Outer arm dynein light chain 1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J6G5-1" }, "locus": { "chromosome": "3", "start_pos": 6137058, "end_pos": 6142157, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G17920.3", "url": "https://www.ensemblgenomes.org/id/AT3G17920.3" }, { "database": "Ensembl Peptide", "id": "AT3G17920.3", "url": "https://www.ensemblgenomes.org/id/AT3G17920.3" } ] } }, { "isoform_ac": "B3H486-1", "url": "https://www.uniprot.org/uniprotkb/F4J6G5/entry#B3H486-1", "sequence": { "sequence": "MVEGFHVISSEVSGRLKDALRHVFASRIAEIKDSPQWNKLAFISCACNRLVLMDESLQLLPAVESLDLSRNKFAKVDNLRRCNKLKHLDLGFNQLRKISHLSEVSCHLVKLVLRNNALTTLRGIENLKSLEGLDVSFNLISDFSELEFLGSLSFLTDLWLEGNPICCARWYRAHVLSYVYLPNDLKLDGKHIGNREFWKRQVVVTRRKSQPASYGFYSPARDEADDEGSFTRKKTKIYRLASIDSEEESTYVNSDQESASCEPETQSKEENIKSDHEADVFGLICKVEQLKKERSVLWLREFKEWIDHPSEDFVDVSKNGSSTDSEQKYYMKNRNGPKHHGETMRYTPGPLPSFQITDLNQKHQAFFLDGKPDENGNMSTLDASQDMTGSFSPSSPPHYQKDVLHRRQNLVEEILQISADSYSVASSDSSCSENENYDSEQSNPEQDTLKDHLSGNRGEDTSLLDSQPEKSSIIKSWKIEDSFKAKTTNFLSGLHKSELASGVNQIYRWFDKKQSKRKPKKRNVSPLEEYSFIKKGETSHRSDADIIDSCEDEYISDHFQEGSLTTGCNSKRSTRFLETEKSLEGMGGLVEEFFTTTLSDSSNDETCRIYVSCDCILQQESTYKQREVVLLLSSQEKLYVLLVGVSTDLQESSLSLLCSHTIGDIRDVSVGLGLQVVRLRFREDAEYIFMTASIEKTTVLLNIIKFLDYQVTESKFSLKSLENVQVELFEKEICSGLKLSIFQYIVLHFQSSTFGEVSWLPRSLFVAGGHLFICNEDFRQLSFLPTDDASSSPYFSLDSSCSISDIFEMVVESRGSSCLSLKVKQKDSTFQSSQKRTVNSVTWKLKLLSPECVPKFVALVNGLHPDSTEFPLFVRHLGER", "length": 880, "header": "tr|B3H486-1|F4J6G5_ARATH Computationally mapped isoform of Outer arm dynein light chain 1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J6G5-1" }, "locus": { "chromosome": "3", "start_pos": 6137058, "end_pos": 6142157, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G17920.2", "url": "https://www.ensemblgenomes.org/id/AT3G17920.2" }, { "database": "Ensembl Peptide", "id": "AT3G17920.2", "url": "https://www.ensemblgenomes.org/id/AT3G17920.2" } ] } }, { "isoform_ac": "F4J6G5-1", "url": "https://www.uniprot.org/uniprotkb/F4J6G5/entry#F4J6G5-1", "sequence": { "sequence": "MAIVTGDRYLENLQRFLDEKADLLIDGTDVLKLNPAGLHYVHLRLESLRELELMLSGAPVDYLRAYVSDIGDFRALEQLRRILRLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLELRGCDLSTSSAKGLLELRHTLEKLICHNSTDALRHVFASRIAEIKDSPQWNKLAFISCACNRLVLMDESLQLLPAVESLDLSRNKFAKVDNLRRCNKLKHLDLGFNQLRKISHLSEVSCHLVKLVLRNNALTTLRGIENLKSLEGLDVSFNLISDFSELEFLGSLSFLTDLWLEGNPICCARWYRAHVLSYVYLPNDLKLDGKHIGNREFWKRQVVVTRRKSQPASYGFYSPARDEADDEGSFTRKKTKIYRLASIDSEEESTYVNSDQESASCEPETQSKEENIKSDHEADVFGLICKVEQLKKERSVLWLREFKEWIDHPSEDFVDVSKNGSSTDSEQKYYMKNRNGPKHHGETMRYTPGPLPSFQITDLNQKHQAFFLDGKPDENGNMSTLDASQDMTGSFSPSSPPHYQKDVLHRRQNLVEEILQISADSYSVASSDSSCSENENYDSEQSNPEQDTLKDHLSGNRGEDTSLLDSQPEKSSIIKSWKIEDSFKAKTTNFLSGLHKSELASGVNQIYRWFDKKQSKRKPKKRNVSPLEEYSFIKKGETSHRSDADIIDSCEDEYISDHFQEGSLTTGCNSKRSTRFLETEKSLEGMGGLVEEFFTTTLSDSSNDETCRIYVSCDCILQQESTYKQREVVLLLSSQEKLYVLLVGVSTDLQESSLSLLCSHTIGDIRDVSVGLGLQVVRLRFREDAEYIFMTASIEKTTVLLNIIKFLDYQVTESKFSLKSLENVQVELFEKEICSGLKLSIFQYIVLHFQSSTFGEVSWLPRSLFVAGGHLFICNEDFRQLSFLPTDDASSSPYFSLDSSCSISDIFEMVVESRGSSCLSLKVKQKDSTFQSSQKRTVNSVTWKLKLLSPECVPKFVALVNGLHPDSTEFPLFVRHLGER", "length": 1010, "header": "tr|F4J6G5-1|F4J6G5_ARATH Isoform 1 of Outer arm dynein light chain 1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J6G5-1" }, "locus": { "chromosome": "3", "start_pos": 6136986, "end_pos": 6142138, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G17920.1", "url": "https://www.ensemblgenomes.org/id/AT3G17920.1" }, { "database": "Ensembl Peptide", "id": "AT3G17920.1", "url": "https://www.ensemblgenomes.org/id/AT3G17920.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 359, "end_pos": 359, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1I9LPK3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A1I9LPK3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser359" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "B3H486", "url": "https://www.uniprot.org/uniprotkb/B3H486" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H486", "url": "https://www.uniprot.org/uniprotkb/B3H486" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G17920", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G17920", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J6G5", "url": "https://www.uniprot.org/uniprotkb/F4J6G5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4J6G5", "url": "https://www.uniprot.org/uniprotkb/F4J6G5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 449, "end_pos": 451, "annotation": "n_glycosylation_sequon" }, { "start_pos": 507, "end_pos": 509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 653, "end_pos": 655, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J6G5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1010, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J6G5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J6G5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 359 ], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 449, "end_pos": 451 }, { "start_pos": 507, "end_pos": 509 }, { "start_pos": 653, "end_pos": 655 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J5D3-1", "uniprot_ac": "F4J5D3", "uniprot_id": "F4J5D3_ARATH", "mass": { "chemical_mass": 74960.0, "monoisotopic_mass": 74960.0 }, "refseq": { "ac": "NP_189050", "name": "KRR1 family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189050" }, "gene_names": [], "protein_names": [ { "name": "KRR1 family protein", "type": "synonym", "evidence": [ { "id": "NP_189050", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189050" }, { "id": "F4J5D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J5D3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J5D3", "url": "https://www.uniprot.org/uniprotkb/F4J5D3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J5D3", "locus": {} } ], "crossref": [ { "id": "F4J5D3", "url": "https://alphafold.ebi.ac.uk/entry/F4J5D3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G24080", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G24080", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "821994", "url": "https://www.ncbi.nlm.nih.gov/gene/821994", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G24080", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24080", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WDNYDPR", "url": "https://omabrowser.org/oma/group/WDNYDPR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14490", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14490", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14490:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14490:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05178", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05178", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12936", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12936", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189050", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189050", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G24080", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G24080", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LNC1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNC2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNC2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H494", "url": "https://www.uniprot.org/uniprotkb/B3H494", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H494-1", "url": "https://www.uniprot.org/uniprotkb/B3H494-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5D3", "url": "https://www.uniprot.org/uniprotkb/F4J5D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5D3-1", "url": "https://www.uniprot.org/uniprotkb/F4J5D3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMGRPKAIPDDDDGELSQFKGFDVDNDFAKRLLHNKEREDLQRYEEKNKQGLFSESEEEPETESEPDSDLGNPESNLKFVDLLIKVKKKDPIIKDKDAKFYEYDDESSEEDEVDKKDTKKKKKKKKMYLKDVQAQHLLEGGPEFVEEDEERKVRTYAEEQKETRKAVTDAWKAEGNESGEDDDFLRVVEKEGDDDVEVDEELAKKMDEYYGDEAEATENQFLKDYLVKQLWKEKEERVPGEEELKELSEDDHEVWDQEDFEAGRPLDLLNYRHEDENAGDTVMGQSRVVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMKKVLSVAGFKDGEECPLDAKDFDDEFDPEEYDKMMKAAFDDKYYGEEDSDLNSDEDDDGEKPDFDKEDELLGLPKDWDVTKGGDVFAAAREKVLKHKENMLGIDEEEEEDEEEEEDEEEEEVDEEKEAEGKRKRKRKTSLVQKTKEALMEEYYKLDYEDTIGELRTRFKYAKVQPNRFELDTGEILTLDDAELNQYVPLKKMAPYVEKDWEVNRHKVKEQKRKIRELWEGKHDEKKSKKRKKNDVVETKPTPKEAEAEAEAEAEAEAEAEAEAKLSRKAKRRRRQAEKKLPPSRMAAYGKA", "length": 638, "header": "tr|F4J5D3-1|F4J5D3_ARATH Isoform 1 of KRR1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5D3-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LNC1-1", "url": "https://www.uniprot.org/uniprotkb/F4J5D3/entry#A0A1I9LNC1-1", "sequence": { "sequence": "MMGRPKAIPDDDDGELSQFKGFDVDNDFAKRLLHNKEREDLQRYEEKNKQGLFSESEEEPETESEPDSDLGNPESNLKFVDLLIKVKKKDPIIKDKDAKFYEYDDESSEEDEVDKKDTKKKKKKKKMYLKDVQAQHLLEGGPEFVEEDEERKVRTYAEEQKETRKAVTDAWKAEGNESGEDDDFLRVVEKEGDDDVEVDEELAKKMDEYYGDEAEATENQFLKDYLVKQLWKEKEERVPGEEELKELSEDDHEVWDQEDFEAGRPLDLLNYRHEDENAGDTVMGQSRVVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMKKVLSVAGFKDGEECPLDAKDFDDEFDPEEYDKMMKAAFDDKYYGEEDSDLNSDEDDDGEKPDFDKEDELLGLPKDWDVTKGGDVFAAAREKVLKHKENMLGIDEEEEEDEEEEEDEEEEEVDEEKEAEGKRKRKRKTSLVQKTKEALMEEYYKLDYEDTIGELRTRFKYAKVQPNRFELDTGEILTLDDAELNQYVPLKKMAPYVEKDWEVNRHKVKEQKRKIRELWEGKHDEKKSKKRKKNDVVETKPTPKEAEAEAEAKLSRKAKRRRRQAEKKLPPSRMAAYGKA", "length": 626, "header": "tr|A0A1I9LNC1-1|F4J5D3_ARATH Computationally mapped isoform of KRR1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5D3-1" }, "locus": { "chromosome": "3", "start_pos": 8694905, "end_pos": 8697142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24080.4", "url": "https://www.ensemblgenomes.org/id/AT3G24080.4" }, { "database": "Ensembl Peptide", "id": "AT3G24080.4", "url": "https://www.ensemblgenomes.org/id/AT3G24080.4" } ] } }, { "isoform_ac": "A0A1I9LNC2-1", "url": "https://www.uniprot.org/uniprotkb/F4J5D3/entry#A0A1I9LNC2-1", "sequence": { "sequence": "MMGRPKAIPDDDDGELSQFKGFDVDNDFAKRLLHNKEREDLQRYEEKNKQGLFSESEEEPETESEPDSDLGNPESNLKFVDLLIKVKKKDPIIKDKDAKFYEYDDESSEEDEVDKKDTKKKKKKKKMYLKDVQAQHLLEGGPEFVEEDEERKVRTYAEEQKETRKAVTDAWKAEGNESGEDDDFLRVVEKEGDDDVEVDEELAKKMDEYYGDEAEATENQFLKDYLVKQLWKEKEERVPGEEELKELSEDDHEVWDQEDFEAGRPLDLLNYRHEDENAGDTVMGQSRVVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMKKVLSVAGFKDGEECPLDAKDFDDEFDPEEYDKMMKAAFDDKYYGEEDSDLNSDEDDDGEKPDFDKEDELLGLPKDWDVTKGGDVFAAAREKVLKHKENMLGIDEEEEEDEEEEEDEEEEEVDEEKEAEGKRKRKRKTSLVQKTKEALMEEYYKLDYEDTIGELRTRFKYAKVQPNRFELDTGEILTLDDAELNQYVPLKKMAPYVEKDWEVNRHKVKEQKRKIRELWEGKHDEKKSKKRKKNDVVETKPTPKEAEAEAEAEAKLSRKAKRRRRQAEKKLPPSRMAAYGKA", "length": 628, "header": "tr|A0A1I9LNC2-1|F4J5D3_ARATH Computationally mapped isoform of KRR1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5D3-1" }, "locus": { "chromosome": "3", "start_pos": 8694867, "end_pos": 8697129, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24080.3", "url": "https://www.ensemblgenomes.org/id/AT3G24080.3" }, { "database": "Ensembl Peptide", "id": "AT3G24080.3", "url": "https://www.ensemblgenomes.org/id/AT3G24080.3" } ] } }, { "isoform_ac": "B3H494-1", "url": "https://www.uniprot.org/uniprotkb/F4J5D3/entry#B3H494-1", "sequence": { "sequence": "MMGRPKAIPDDDDGELSQFKGFDVDNDFAKRLLHNKEREDLQRYEEKNKQGLFSESEEEPETESEPDSDLGNPESNLKFVDLLIKVKKKDPIIKDKDAKFYEYDDESSEEDEVDKKDTKKKKKKKKMYLKDVQAQHLLEGGPEFVEEDEERKVRTYAEEQKETRKAVTDAWKAEGNESGEDDDFLRVVEKEGDDDVEVDEELAKKMDEYYGDEAEATENQFLKDYLVKQLWKEKEERVPGEEELKELSEDDHEVWDQEDFEAGRPLDLLNYRHEDENAGDTVMGQSRVVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMKKVLSVAGFKDGEECPLDAKDFDDEFDPEEYDKMMKAAFDDKYYGEEDSDLNSDEDDDGEKPDFDKEDELLGLPKDWDVTKGGDVFAAAREKVLKHKENMLGIDEEEEEDEEEEEDEEEEEVDEEKEAEGKRKRKRKTSLVQKTKEALMEEYYKLDYEDTIGELRTRFKYAKVQPNRFELDTGEILTLDDAELNQYVPLKKMAPYVEKDWEVNRHKVKEQKRKIRELWEGKHDEKKSKKRKKNDVVETKPTPKEAEAEAEAEAEAKLSRKAKRRRRQAEKKLPPSRMAAYGKA", "length": 630, "header": "tr|B3H494-1|F4J5D3_ARATH Computationally mapped isoform of KRR1 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5D3-1" }, "locus": { "chromosome": "3", "start_pos": 8694905, "end_pos": 8697142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24080.2", "url": 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family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5D3-1" }, "locus": { "chromosome": "3", "start_pos": 8694867, "end_pos": 8697129, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24080.1", "url": "https://www.ensemblgenomes.org/id/AT3G24080.1" }, { "database": "Ensembl Peptide", "id": "AT3G24080.1", "url": "https://www.ensemblgenomes.org/id/AT3G24080.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 101, "end_pos": 101, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Tyr101" }, { "start_pos": 103, "end_pos": 103, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr103" }, { "start_pos": 107, "end_pos": 107, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser107" }, { "start_pos": 108, "end_pos": 108, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser108" }, { "start_pos": 168, "end_pos": 168, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "site_lbl": "Thr168" }, { "start_pos": 178, "end_pos": 178, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser178" }, { "start_pos": 342, "end_pos": 342, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser342" }, { "start_pos": 386, "end_pos": 386, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser386" }, { "start_pos": 390, "end_pos": 390, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser390" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "B3H494", "url": "https://www.uniprot.org/uniprotkb/B3H494" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "J. Proteome Res.", "date": "2008", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "B3H494", "url": "https://www.uniprot.org/uniprotkb/B3H494" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "B3H494", "url": "https://www.uniprot.org/uniprotkb/B3H494" }, { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "B3H494", "url": "https://www.uniprot.org/uniprotkb/B3H494" }, { "database": "iPTMnet", "id": "B3H494", "url": 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"authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H494", "url": "https://www.uniprot.org/uniprotkb/B3H494" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "B3H494", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B3H494" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT3G24080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24080", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JXS2-1", "protein_name": "Protein KRI1 homolog", "gene_name": "Kri1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEPRAPATLKVNAAFAARYSRYREREELQRLKDRYGDRDDGSDSSSESDSSDEHVEFDPQQERDFYRTLSLLKKKDPRIYQKDATFYQRTAEASSSESEEESAALGKQKKVQPMYLKDYERKVILEKEGKYVDEDNSDGESVDHRLQETATKSYIEEQRQLKESFRAFVEDSSDEDSAGEGGSGLLQKHTKSGEEKAQEDVDYLEWLKGQKEIDSSESLKELTHLKEYWNNPELDEGEQFLRDYILNKRYEEDEEEETEEERVLGPPVQLAVDDSSDEGELFLKKQEDFEHKYNFRFEEPDSASVKTYPRSIASSVRRKDDRRKEKREETRERKKREKAKKQEELKQLKNLKRKEILAKLEKLRQVTGNETLGLEEQDLEDDFDPAQHDQLMQKCFGDAFYGTVEEEKPQFEEEEGLEDDWNWDTWGGPEQNGAWSQQELHCEDPDFNMDADYDPSQPRKKLREAPTSGKRKRKSPFAAAVGQEKPMFDPGDKTFEEYLDEYYRLDYEDIIDDLPCRFKYRTVVPCDFGLSTEEILSADDKELNRWCSLKKTCMYRSEQEEMQEQRAYSQKAQSVWKKRQIFKSLCQEEVEMPTEATGKSPSKASSQVQLPMPSAAGGKKPQAELSGAKEEELAHTPCPEKPASQKQKSKKARLLGPTVTLGGHKFSRQRLQAFGLNPKRLHFRQLGRQRKKQQSHA", "length": 698 }, "evidence": [ { "id": "F4J5D3", "url": "https://omabrowser.org/oma/group/F4J5D3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A9J7FT97-1", "protein_name": "Protein KRI1 homolog", "gene_name": "Kri1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPEPHGSASLRVNAAFAARYSRYREREELQRLKDRYGDPDGSDSSSESDSSDEHVEFDPQQERDFYRTLSLLKKKDPRIYQKDATFYQRTAEEGSWGQQVSSHCPTAETSSSESEEEPAASEKQKKMQPMYLKDYERKVILEKEGKYVDEDNSDGETFDHRLKETSMKSYVEEQRQLKESFRAFVEDSSDEDSAAEGGSGLLRKHTKSGEEKAQEEVDYLEWLKGQKEIHSSESLKELTHLKEYWNSPELDEGEQFLRDYILNKRYEEEEEEEDMEEEGVPGPTVQLAVDDSSDEGELFLRKQEDFEHKYNFRFEEPDSASVKTYPRSIASSVRRKDERRKEKREETRERKKREKAKKQEELKQLKNLKRKEILAKLEKLRQVTGNETLGLEEQDLEGDFDPAQHDQLMQKCLGDGFYGTAEEEKPHFEEEEGLEDDWNWDTWSGPKQDGAWSQQEPHCEDPDFNMDADYDPSQPQKKLREAPSSGKKKRKSPFAAAVGQQKPMFDPEDKTFEEYLDEYYRLDYEDIIDDLPCRFKYRTVVPCDFGLSTEEILAADDKELNRWCSLKKTCMYRSEQEEMQEKRAYSQKAQNLWKKRQIFKSLCGEEMEMPTEATGKSQGKASPQAQLPVPNGACGKRPQSETHVAKEEELAHTSYPEKPTSQRQKSKKARLLGPTVTLGGHKFSRQRLQAFGLNPKRLHFRQLGRQRRKQQSNP", "length": 714 }, "evidence": [ { "id": "F4J5D3", "url": "https://omabrowser.org/oma/group/F4J5D3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1S3M3-1", "protein_name": "Protein KRI1 homolog", "gene_name": "KRI1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPEPRGSSPLRVNAAFAARYGRYREREELQRLKDRYGDQDGSGDSSSESDSSDERVEFDPQQERDFYRTLSLLKKKDPRIYKKDATFYQRTASSSESEEEPAAEEKQKKVCPMYLKDYERKVILEKGGKYVDEENSDGETSDQRLQQTSAKSYVEEQKQLKESFRAFVEDSEDEDSAGEGGSRLLQKRAKSREEKAQEDADYIEWLKGQKEIQNSDTLKELTHLREYWNNPELDEGERFLRDYILNKRYEEEGDEEEEEEEEEEEEDRVPGPPVQLAVDDSSDEGELFLKKQEDFEHKYNFRFEEPDSALVKTYPRNIASSVRRKDERRKERREETRERKKREKARKQEELKQLKNLKRKEILAKLERLRQVTGNETLGFEEQDLEDDFDPARHDQLMQKCFGDEYYGTAEEEKPQFEEEEGLEDDWNWDTWAGPEQGGAWSQPELHCEDPDFNMDADYDPSQPRKKHREAPSLGKKKRKSPFATAVGQEKPVFDPGDKTFEEYLDEYYRLDYEDIIDDLPCRFKYRTVVPCDFGLSTEEILAADDKELNRWCSLKKTCMYRSEQEELQDKRSYSQKAQNTWKKRQIFKSLCSEETETATTEATRKPQRDKAGLQGQLLPPDGACGKQPRPESPPAQEEEASVPPAKKPAPQRRRRGKKARLLGPTVTLGGREFSRQRLQAFGLNPKRLHFRQLGRQQRKQQGPKSSP", "length": 708 }, "evidence": [ { "id": "F4J5D3", "url": "https://omabrowser.org/oma/group/F4J5D3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P42846-1", "protein_name": "Protein KRI1", "gene_name": "KRI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MPRKKSAAKRAREQAKKEAAVPATDTATIKTSETSATTVKPAIEASKSYVPSEDEEEDEEEEEEEDDYGELITDEVENGINQVLDAIKNNKTDKLLDPKVKFFEDPESAAAKLANREGKHKPIYLKDYHRMNILSGDALKEDDEEYEHATVDGKQSFVSQQREEKTQLLNEIKSAFSDEENEESSGDEDDGFLKKKEPSTKKEGKNLPDPTVNEENFLEEFVNQQAWIPKKGDKVISLDLNNNEEDDEEFEDAAEKFENAYNFRYEDPNAAEIISYARSQATLRRSDDSSRRRKREEKRKIKEQIKAEKETALQKKKTKKLNKLTDILEQLTKEYGAEINADMVKKITDTLLKNDFKEEEWDNVVAELFNEEFYQQEGKPTWNEDDEIMGDFYADADGDDQTEEGEVEKEQKEEDEEEGPKRKKSKKEEKLQKKKEKRKVNELVENALEQNKLALIEEVEKEEEERKSRSRTKEEQDLKFRYREVSPESFGLTAREIFAADDTDLNEFIGLKKFAPYRSKELRAKDKRKVMKARRLREWRKKTFKNENGLAPVEAEAGEKDEDTILIPVEKASKSKHKRGHSHKHKGHQKK", "length": 591 }, "evidence": [ { "id": "F4J5D3", "url": "https://omabrowser.org/oma/group/F4J5D3/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0V8M0-1", "protein_name": "Protein KRI1 homolog", "gene_name": "KRI1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPEPRGSSPLRVNAAFAARYGRYREREELQRLKDRYGDRHSSSDSSSESDSSDEHVEFDPQQERDFYRTLSLLKKKDPRIYQKDATFYQRTASSSDSEEEPAAEKRKKVQPMYLKDYERKVILEKGGKYVDEENSDGETSNQRLQQSSSKSYVEEQKQLKESFRAFVEDSEDEDSAEEGGSGLLQKRAKSKEEKAQEDADYIEWLKGQKEIQNPDTLKELTHLREFWNNPELDEGERFLRDYILNKRYEEEGEEEDEEEEDEEEERVPGPPVQLAVDDSSDEGELFLKKQEDFELKYNFRFEEPDSASVKTYPRSIASSVRRKDERRKEKREETRERKKREKARKQEELKQLKNLKRKEILAKLERLRQVTGNETLGFEEQDLEGDFDPARHDQLMQKCFGDEYYGAMEEEKPQFEEEEGLEDDWNWDTWAGPEQGGAWSQQEPHCEDPDFNMDADYDPSQPRKKQREAPSLGKKKRKSPFATAVGQEKPVFDPGDKTFEEYLDEYYRLDYEDIIDDLPCRFKYRTVVPCDFGLSTEEILAADDKELNRWCSLKKTCMYRSEQEELQDKRVYSQKARNVWKKQQIFKSLCPEEAEMPTEATGKPQRDRAGSSGQLVAPDGACGKRSQPESTPAEEEADPVTPTEKLAPQRRKRGKKARLLGPTVTLGGREFSRQRLQAFGLNPKRLHFRQLGRQRRKQQGPKSSH", "length": 705 }, "evidence": [ { "id": "F4J5D3", "url": "https://omabrowser.org/oma/group/F4J5D3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54D59-1", "protein_name": "Kri1-like C-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDSSDSESSYNSSSSSSSENESNKDEKKVLFQDDSESEAENEIKVNEKFERMYEAKKAHNELISASTTLEEDEQSEDDDGKFDSKVMKDGFLTLLPLLAKKKTDLLLKNKDVKFFNNNNDNNNNDEEEEEDEGSDEADSESEESESEKKKKKKPFTLKDYQREKLTKTMNKDQYEESDEEDFDSLPHNKQQEKLKKDFFDASRKSFKDGGGDDGDDDDGEDGSDDDFLVKRKKTEQDQEIEDKEFEEFRQRLEKKKSPFLEETDTISEFWKGKDADTDEKFLRDYLLGQKWQSDKGKLPTYEEILKELDQDEGETVKQDDFERTFNFRFEEPGSAIIVNHPRTIENSVRRKDSARKTKREKKKERKEQRAVQNQEKIKQLKNEKKKQILEKVKEINSITGSNLFNLDSVDIKKIDPEIMVKSIGKKVKQPQQQDSNNNEEEGYDENYEGGEGDDYQYDEGNGGRYDLNKIIESGLYDDQFEDDGEVWSNERMSKEREELESMLDRYYEMDYQDLLGDDTPVRFKYTKVEPDSTISIDDILEKDDKDLEKILPLNKIATYYNPSYKGYRQKADKRYFDKPSTSKYLTKSSKTSTNYNSKYNQNKQFNSKFDNNNNNNKNNNNNNKNNNNNNKFNNNKKEEFSNNKKDYNNNKPQQQPQQPQTTEPTEPAGEKKRKAKNKNKASTNKIQKVE", "length": 691 }, "evidence": [ { "id": "F4J5D3", "url": "https://omabrowser.org/oma/group/F4J5D3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8N9T8-1", "protein_name": "Protein KRI1 homolog", "gene_name": "KRI1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPEPRGSSQLRVNAAFAARYNRYREREELQRLKDRYGDRDSSSDSSSESDSSDERVEFDPQQERDFYKTLSLLKKKDPRIYQKDATFYNRTASSSDSEEDPEALEKQKKVRPMYLKDYERKVILEKAGKYVDEENSDGETSNHRLQETSSQSYVEEQKQLKESFRAFVEDSEDEDGAGEGGSSLLQKRAKTRQEKAQEEADYIEWLKGQKEIRNPDSLKELTHLKEYWNDPELDEGERFLRDYILNKRYEEEEEEEEDEEEMEEEEGVHGPPVQLAVDDSSDEGELFLKKQEDFEQKYNFRFEEPDSASVKTYPRSIASSVRRKDERRKEKREETRERKKREKAKKQEELKQLKNLKRKEILAKLEKLRKVTGNEMLGLEEGDLEDDFDPAQHDQLMQKCFGDEYYGAVEEEKPQFEEEEGLEDDWNWDTWDGPEQEGDWSQQELHCEDPNFNMDADYDPSQPRKKKREAPLTGKKKRKSPFAAAVGQEKPVFEPGDKTFEEYLDEYYRLDYEDIIDDLPCRFKYRTVVPCDFGLSTEEILAADDKELNRWCSLKKTCMYRSEQEELRDKRAYSQKAQNSWKKRQVFKSLCREEAETPAEATGKPQRDEAGPQRQLPALDGSLMGPESPPAQEEEAPVSPHKKPAPQKRRRAKKARLLGPTVMLGGCEFSRQRLQAFGLNPKRLHFRQLGRQRRKQQGPKNSS", "length": 703 }, "evidence": [ { "id": "F4J5D3", "url": "https://omabrowser.org/oma/group/F4J5D3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VDQ9-1", "protein_name": "Protein KRI1 homolog", "gene_name": "Kri1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPEPRASGCLKVNAAFAARYSRYREREELQRLKDRYGDPDVGGDSSSESDSSDEHVEFDPQQERDFYRTLSLLKKKDPRIYQKDATFYQRTAEASSSESEEEPPAALGKQEKQQKQQPMYLKDYERKVILEKGGKYVDEDNSDGETVDHRLQETSTKSYVEEQKQLKESFRAFVEDSSDEDSAGEGGSGLLQKHTKSREEKAQEEVDYLEWLKGQKDMDSSESLKELTHLKEYWNNPGLDEGEQFLRDYILNKRYEEEEEEEEEEEEEGAPGPPVQLAVDDSSDEGELFLKKQEDFEHKYNFRFEEPDSASVKTYPRSIASSVRRKDERRKEKREETRERKKREKARKQEELKQLKNLKRKEILAKLEKLRQATGNETLGLEEQDLEADFDPAQHDQLMQKCFGDAFYGTAEEEKPQFEEEDGLEDDWNWDMWGGPEQDGAWSQQELHCEDPDFNMDADYDPSQPRKKLREAPTSGKRKRKSPFAAAVGQEKPMFDPGDKTFEEYLDEYYRLDYEDIIDDLPCRFKYRTVVPCDFGLSTEEILSADDKELNRWCSLKKTCMYRSEQEEMQEQRVYSQKAQNMWKKRQIFKSLCQEEMEMSTEATGKSQSKASPQVQLPTPNGADQRTPQAETLVSKEEGLAHTSCPEKPASQKQKSKKARLLGPTVTLGGHKFSRQRLQAFGLNPKRLHFRQLGRQRKKQQSHS", "length": 704 }, "evidence": [ { "id": "F4J5D3", "url": "https://omabrowser.org/oma/group/F4J5D3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VTU0-1", "protein_name": "Protein KRI1 homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNNNLFEGSDDDGEDLQLSTNKDYAKTYNILRKKELLQKYKDRGLDVSESEFDSDSSSSEEDEVDPKFDQDFFKTLSSLKSKDPCIYDKGTKFFSESSGDEDDKDGEAPKKKKKAKPVTLKDYERKVILEHNGKFESSDEEQQEKEHEELQRAQSPSAVEEERRLKAEFRKVMNKEDDSEDEEFGGIFKKRSKTKEQTAAEEADFAKWLAGKQAEIQETDKKQLEPLKQYWSSNKLTQGESFLRDYILNKGYANTDESAIPTYDEIVGEAAPLSEDEQELEKQAEFEHKYNFRFEEPDADFIKRYPRTIEQSLRRTDDKRKEKRKELKERKDQEKQQKMKELELVKEMKRKEIDEKIRKLKAVTGNDELGFRDEELEEDFDPAAHDRRMQELFDDEYYNVDEGEEKPECPSDIDELVLEDWDNYDPRQHANGGGEDYEGHCEDDDFNMDCDYDPSTAKEQLQQELIENTRGRKGRKGRRNRFMEMIQAEKPAFNPEDEKTYSEYIDEYYQMDCEDIIGDQPCRFKYVETTPNDFGLTIEEILLAKNKELNQWASLKKAVQNRPEHVEKKEQRLYKMKAKNEDLKRKIFKSLYGEGSDDEEQPAEEKPEVTPAEATAPAENGQVSTEGLSKSKRKRLKRKAAAAAASAPKVLKEESDSKDPKEADGSTEDVQAESSKKKVDTPSKKGKDDANQETKNSPQSTEKTKNNNALKNNKKEPKNVQNGFQKPQNQANKSAKTKSNQPFKTTESAPAKAEKSNGNNPFNKPQSKSQQRQELPPIHKNQGGNKKGPRNANGTNPFKKSNQKPSAPFPAKKTNNFKAKNKQNNNSGITDDRLKAYGINPRKFHKREKYGKKDN", "length": 855 }, "evidence": [ { "id": "F4J5D3", "url": "https://omabrowser.org/oma/group/F4J5D3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J5D3", "url": "https://www.uniprot.org/uniprotkb/F4J5D3" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F4J5D3", "url": "https://www.uniprot.org/uniprotkb/F4J5D3" } ], "pmid": "" }, { "name": "90S preribosome", "id": "GO:0030686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030686", "evidence": [ { "database": "UniProtKB", "id": "F4J5D3", "url": "https://www.uniprot.org/uniprotkb/F4J5D3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000447", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000447", "evidence": [ { "database": "UniProtKB", "id": "F4J5D3", "url": "https://www.uniprot.org/uniprotkb/F4J5D3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J5D3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 638, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J5D3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J5D3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J5D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J5D3" }, { "id": "PF12936", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12936" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kri1-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 481, "end_pos": 565, "start_aa": "Thr", "end_aa": "Trp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 101, 103, 107, 108, 168, 178, 342, 386, 390 ], "sequon_annotation_sites": [ { "start_pos": 176, "end_pos": 178 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 9 }, { "field": "total_sites", "count": 9 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J827-1", "uniprot_ac": "F4J827", "uniprot_id": "F4J827_ARATH", "mass": { "chemical_mass": 24693.0, "monoisotopic_mass": 24693.0 }, "refseq": { "ac": "NP_190838", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190838" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4J827", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J827/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_190838", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190838" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"categories": [ "Protein" ] }, { "id": "AT3G52700", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G52700", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "B3H4G9", "url": "https://www.uniprot.org/uniprotkb/B3H4G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B3H4G9-1", "url": "https://www.uniprot.org/uniprotkb/B3H4G9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J827", "url": "https://www.uniprot.org/uniprotkb/F4J827", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J827-1", "url": "https://www.uniprot.org/uniprotkb/F4J827-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLTKKKKKKKKKKIDRSYFKCDHVFCYYSDIARKEETMLAVFTKSVAGVKLFGMMYPVLERSENLPTDDSIDAIKEIAKALQSVLFKLHINGYSSLLHPLGVNNVDFILKFYVVKDGENDSLRVINVYHKLCGEAEDSWLEIVNNFRGEFSFISMMQRIEASLLLMNDYNFGTGGSVCYVHIFGGHYLASGKGLRKLQLPLMETKMEPLIPDDIV", "length": 216, "header": "tr|F4J827-1|F4J827_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J827-1" }, "isoforms": [ { "isoform_ac": "B3H4G9-1", "url": "https://www.uniprot.org/uniprotkb/F4J827/entry#B3H4G9-1", "sequence": { "sequence": "MLAVFTKSVAGVKLFGMMYPVLERSENLPTDDSIDAIKEIAKALQSVLFKLHINGYSSLLHPLGVNNVDFILKFYVVKDGENDSLRVINVYHKLCGEAEDSWLEIVNNFRGEFSFISMMQRIEASLLLMIQLVML", "length": 135, "header": "tr|B3H4G9-1|F4J827_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J827-1" }, "locus": { "chromosome": "3", "start_pos": 19532195, "end_pos": 19533093, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52700.2", "url": "https://www.ensemblgenomes.org/id/AT3G52700.2" }, { "database": "Ensembl Peptide", "id": "AT3G52700.2", "url": "https://www.ensemblgenomes.org/id/AT3G52700.2" } ] } }, { "isoform_ac": "F4J827-1", "url": "https://www.uniprot.org/uniprotkb/F4J827/entry#F4J827-1", "sequence": { "sequence": "MLLTKKKKKKKKKKIDRSYFKCDHVFCYYSDIARKEETMLAVFTKSVAGVKLFGMMYPVLERSENLPTDDSIDAIKEIAKALQSVLFKLHINGYSSLLHPLGVNNVDFILKFYVVKDGENDSLRVINVYHKLCGEAEDSWLEIVNNFRGEFSFISMMQRIEASLLLMNDYNFGTGGSVCYVHIFGGHYLASGKGLRKLQLPLMETKMEPLIPDDIV", "length": 216, "header": "tr|F4J827-1|F4J827_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J827-1" }, "locus": { "chromosome": "3", "start_pos": 19532196, "end_pos": 19538403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52700.1", "url": "https://www.ensemblgenomes.org/id/AT3G52700.1" }, { "database": "Ensembl Peptide", "id": "AT3G52700.1", "url": "https://www.ensemblgenomes.org/id/AT3G52700.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "B3H4G9", "url": "https://www.uniprot.org/uniprotkb/B3H4G9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H4G9", "url": "https://www.uniprot.org/uniprotkb/B3H4G9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G52700", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G52700", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J827-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 216, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J827-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J827" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"gene_names": [ { "name": "FLDH", "type": "recommended", "evidence": [ { "id": "F4JIW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIW8" } ] }, { "name": "F17M5.120", "type": "synonym", "evidence": [ { "id": "NP_001190902", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190902" }, { "id": "F4JIW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIW8" } ] }, { "name": "F17M5_120", "type": "synonym", "evidence": [ { "id": "NP_001190902", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190902" }, { "id": "F4JIW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIW8" } ] }, { "name": "FLDH", "type": "synonym", "evidence": [ { "id": "NP_001190902", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190902" } ] }, { "name": "farnesol dehydrogenase", "type": "synonym", "evidence": [ { "id": "NP_001190902", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190902" }, { "id": "F4JIW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIW8" } ] } ], "protein_names": [ { "name": "NAD(P)-binding Rossmann-fold superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_001190902", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190902" }, { "id": "F4JIW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JIW8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JIW8", "url": "https://www.uniprot.org/uniprotkb/F4JIW8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "FLDH", "url": "https://www.uniprot.org/uniprotkb/F4JIW8", "locus": { "chromosome": "CP002687.1", "start_pos": 16067672, "end_pos": 16069374, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "AT4G33360", "url": "https://www.ensemblgenomes.org/id/AT4G33360" } ] } } ], "crossref": [ { "id": "F4JIW8", "url": "https://alphafold.ebi.ac.uk/entry/F4JIW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G33360", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G33360", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "1.1.1.354", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=1.1.1.354&UniProtAcc=F4JIW8", "database": "BRENDA", "categories": [ "Enzyme and Pathway" ] }, { "id": "cd05228", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05228", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "829473", "url": "https://www.ncbi.nlm.nih.gov/gene/829473", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "Q9SZB3", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q9SZB3*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001509", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G33360", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G33360", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EWYGESK", "url": "https://omabrowser.org/oma/group/EWYGESK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "B3H6K6", "url": "https://www.orthodb.org/?gene=B3H6K6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": 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"MKILVTGSTGYLGARLCHVLLRRGHSVRALVRRTSDLSDLPPEVELAYGDVTDYRSLTDACSGCDIVFHAAALVEPWLPDPSRFISVNVGGLKNVLEAVKETKTVQKIIYTSSFFALGSTDGSVANENQVHNERFFCTEYERSKAVADKMALNAASEGVPIILLYPGVIFGPGKLTSANMVARMLIERFNGRLPGYIGSGTDRYSFSHVDDVVEGHVAAMEKGRLGERYLLTGENASFKLVFDMAALITGTKKPNFSIPLWAINAYGWLSVLISRVTGKLPLISPPTVTVLRHQWSYSCDKAKLELGYNPRSLKEGLEEMLPCHYDE", "length": 327, "header": "tr|F4JIW8-1|F4JIW8_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN=FLDH PE=1 SV=1 CANONICAL=F4JIW8-1" }, "isoforms": [ { "isoform_ac": "B3H6K6-1", "url": "https://www.uniprot.org/uniprotkb/F4JIW8/entry#B3H6K6-1", "sequence": { "sequence": "MGPKMPNTETENMKILVTGSTGYLGARLCHVLLRRGHSVRALVRRTSDLSDLPPEVELAYGDVTDYRSLTDACSGCDIVFHAAALVEPWLPDPSRFISVNVGGLKNVLEAVKETKTVQKIIYTSSFFALGSTDGSVANENQVHNERFFCTEYERSKAVADKMALNAASEGVPIILLYPGVIFGPGKLTSANMVARMLIERFNGRLPGYIGSGTDRYSFSHVDDVVEGHVAAMEKGRLGERYLLTGENASFKLVFDMAALITGTKKPNFSIPLWAINAYGWLSVLISRVTGKLPLISPPYFVMNRQ", "length": 305, "header": "tr|B3H6K6-1|F4JIW8_ARATH Computationally mapped isoform of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN=FLDH PE=1 SV=1 CANONICAL=F4JIW8-1" }, "locus": { "chromosome": "4", "start_pos": 16067672, "end_pos": 16069374, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G33360.2", "url": "https://www.ensemblgenomes.org/id/AT4G33360.2" }, { "database": "Ensembl Peptide", "id": "AT4G33360.2", "url": "https://www.ensemblgenomes.org/id/AT4G33360.2" } ] } }, { "isoform_ac": "F4JIW8-1", "url": "https://www.uniprot.org/uniprotkb/F4JIW8/entry#F4JIW8-1", "sequence": { "sequence": "MKILVTGSTGYLGARLCHVLLRRGHSVRALVRRTSDLSDLPPEVELAYGDVTDYRSLTDACSGCDIVFHAAALVEPWLPDPSRFISVNVGGLKNVLEAVKETKTVQKIIYTSSFFALGSTDGSVANENQVHNERFFCTEYERSKAVADKMALNAASEGVPIILLYPGVIFGPGKLTSANMVARMLIERFNGRLPGYIGSGTDRYSFSHVDDVVEGHVAAMEKGRLGERYLLTGENASFKLVFDMAALITGTKKPNFSIPLWAINAYGWLSVLISRVTGKLPLISPPTVTVLRHQWSYSCDKAKLELGYNPRSLKEGLEEMLPCHYDE", "length": 327, "header": "tr|F4JIW8-1|F4JIW8_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN=FLDH PE=1 SV=1 CANONICAL=F4JIW8-1" }, "locus": { "chromosome": "4", "start_pos": 16067808, "end_pos": 16069367, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G33360.3", "url": "https://www.ensemblgenomes.org/id/AT4G33360.3" }, { "database": "Ensembl Peptide", "id": "AT4G33360.3", "url": "https://www.ensemblgenomes.org/id/AT4G33360.3" } ] } }, { "isoform_ac": "Q9SZB3-1", "url": "https://www.uniprot.org/uniprotkb/F4JIW8/entry#Q9SZB3-1", "sequence": { "sequence": "MGPKMPNTETENMKILVTGSTGYLGARLCHVLLRRGHSVRALVRRTSDLSDLPPEVELAYGDVTDYRSLTDACSGCDIVFHAAALVEPWLPDPSRFISVNVGGLKNVLEAVKETKTVQKIIYTSSFFALGSTDGSVANENQVHNERFFCTEYERSKAVADKMALNAASEGVPIILLYPGVIFGPGKLTSANMVARMLIERFNGRLPGYIGSGTDRYSFSHVDDVVEGHVAAMEKGRLGERYLLTGENASFKLVFDMAALITGTKKPNFSIPLWAINAYGWLSVLISRVTGKLPLISPPTVTVLRHQWSYSCDKAKLELGYNPRSLKEGLEEMLPWLKSLGVIHY", "length": 344, "header": "tr|Q9SZB3-1|Q9SZB3_ARATH Computationally mapped isoform of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN=FLDH PE=1 SV=1 CANONICAL=F4JIW8-1" }, "locus": { "chromosome": "4", "start_pos": 16067672, "end_pos": 16069374, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G33360.1", "url": "https://www.ensemblgenomes.org/id/AT4G33360.1" }, { "database": "Ensembl Peptide", "id": "AT4G33360.1", "url": "https://www.ensemblgenomes.org/id/AT4G33360.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "B3H6K6", "url": "https://www.uniprot.org/uniprotkb/B3H6K6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H6K6", "url": "https://www.uniprot.org/uniprotkb/B3H6K6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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"https://www.uniprot.org/uniprotkb/F4JHB3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLPPPESSSNPISSFSVAQKRMLLQRCESKFKIRKLNDTVEEDNVTQMEPNFTLENTLVSEPEADLRPHTTEPTTEEETQRSSAKSQLYNLCSVRHWKAPLYEYIAEGPCHMKIFTGKVTVEMKEDSRITVLECFGNPQYKKKIAAEQAAEAALWYLKNVGYTLQTEKASGRKGRSKPISKMMVTGEPV", "length": 190, "header": "tr|F4JHB3-1|F4JHB3_ARATH Isoform 1 of Double-stranded RNA-binding domain (DsRBD)-containing protein OS=Arabidopsis thaliana OX=3702 GN=A_IG005I10.3 PE=1 SV=1 CANONICAL=F4JHB3-1" }, "isoforms": [ { "isoform_ac": "B3H7E2-1", "url": "https://www.uniprot.org/uniprotkb/F4JHB3/entry#B3H7E2-1", "sequence": { "sequence": "MLLQRCESKFKIRKLNDTVEEDNVTQMEPNFTLENTLVSEPEADLRPHTTEPTTEEETQRSSAKSQLYNLCSVRHWKAPLYEYIAEGPCHMKIFTGKVTVEMKEDSRITVLECFGNPQYKKKIAAEQAAEAALWYLKNVGYTLQTEKASGRKGRSKPISKMMVTGEPV", "length": 168, "header": "tr|B3H7E2-1|F4JHB3_ARATH Computationally mapped isoform of Double-stranded RNA-binding domain (DsRBD)-containing protein OS=Arabidopsis thaliana OX=3702 GN=A_IG005I10.3 PE=1 SV=1 CANONICAL=F4JHB3-1" }, "locus": { "chromosome": "4", "start_pos": 181323, "end_pos": 184387, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00420.3", "url": "https://www.ensemblgenomes.org/id/AT4G00420.3" }, { "database": "Ensembl Peptide", "id": "AT4G00420.3", "url": "https://www.ensemblgenomes.org/id/AT4G00420.3" } ] } }, { "isoform_ac": "F4JHB3-1", "url": "https://www.uniprot.org/uniprotkb/F4JHB3/entry#F4JHB3-1", "sequence": { "sequence": "MDLPPPESSSNPISSFSVAQKRMLLQRCESKFKIRKLNDTVEEDNVTQMEPNFTLENTLVSEPEADLRPHTTEPTTEEETQRSSAKSQLYNLCSVRHWKAPLYEYIAEGPCHMKIFTGKVTVEMKEDSRITVLECFGNPQYKKKIAAEQAAEAALWYLKNVGYTLQTEKASGRKGRSKPISKMMVTGEPV", "length": 190, "header": "tr|F4JHB3-1|F4JHB3_ARATH Isoform 1 of Double-stranded RNA-binding domain (DsRBD)-containing protein OS=Arabidopsis thaliana OX=3702 GN=A_IG005I10.3 PE=1 SV=1 CANONICAL=F4JHB3-1" }, "locus": { "chromosome": "4", "start_pos": 181267, "end_pos": 184393, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00420.4", "url": "https://www.ensemblgenomes.org/id/AT4G00420.4" }, { "database": "Ensembl Peptide", "id": "AT4G00420.4", "url": "https://www.ensemblgenomes.org/id/AT4G00420.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "B3H7E2", "url": "https://www.uniprot.org/uniprotkb/B3H7E2" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "B3H7E2", "url": "https://www.uniprot.org/uniprotkb/B3H7E2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G00420", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G00420", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular 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"Protein Classification" ] }, { "id": "F4JIP3", "url": "https://www.orthodb.org/?gene=F4JIP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34064", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34064", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34064:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34064:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_680731", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680731", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G21215", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G21215", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JIP3", "url": "https://www.uniprot.org/uniprotkb/F4JIP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JIP3-1", "url": "https://www.uniprot.org/uniprotkb/F4JIP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENGGTIPGQEIGSGLQKPVNPDGFVTIDVESFSNVIHKDFSSSSPRITRNVSRKGSPRSNNERKLHFDANGNDKEISFPQSPLRGSSTPEKASTVGPTEHAGTATTAATAVSASPLHQITVTTAATAAGNMITDQNRERRFGFSRKSSFKRSHTSWMLDPKKIVLFFATLSSMGSILLIIFTLSISKSNPGDMPLD", "length": 197, "header": "tr|F4JIP3-1|F4JIP3_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JIP3-1" }, "isoforms": [ { "isoform_ac": "F4JIP3-1", "url": "https://www.uniprot.org/uniprotkb/F4JIP3/entry#F4JIP3-1", "sequence": { "sequence": "MENGGTIPGQEIGSGLQKPVNPDGFVTIDVESFSNVIHKDFSSSSPRITRNVSRKGSPRSNNERKLHFDANGNDKEISFPQSPLRGSSTPEKASTVGPTEHAGTATTAATAVSASPLHQITVTTAATAAGNMITDQNRERRFGFSRKSSFKRSHTSWMLDPKKIVLFFATLSSMGSILLIIFTLSISKSNPGDMPLD", "length": 197, "header": "tr|F4JIP3-1|F4JIP3_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JIP3-1" }, "locus": { "chromosome": "4", "start_pos": 11310385, "end_pos": 11313709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G21215.1", "url": "https://www.ensemblgenomes.org/id/AT4G21215.1" }, { "database": "Ensembl Peptide", "id": "AT4G21215.1", "url": "https://www.ensemblgenomes.org/id/AT4G21215.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 82, "end_pos": 82, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JIP3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JIP3" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser82" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J5R1-1", "uniprot_ac": "F4J5R1", "uniprot_id": "F4J5R1_ARATH", "mass": { "chemical_mass": 77473.0, "monoisotopic_mass": 77473.0 }, "refseq": { "ac": "NP_190778", "name": "RING/FYVE/PHD-type zinc finger family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190778" }, "gene_names": [], "protein_names": [ { "name": "RING/FYVE/PHD-type zinc finger family protein", "type": "synonym", "evidence": [ { "id": "NP_190778", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190778" }, { "id": "F4J5R1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J5R1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J5R1", "url": "https://www.uniprot.org/uniprotkb/F4J5R1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J5R1", "locus": {} } ], "crossref": [ { "id": "F4J5R1", "url": "https://alphafold.ebi.ac.uk/entry/F4J5R1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G52100", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G52100", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824373", "url": "https://www.ncbi.nlm.nih.gov/gene/824373", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G52100", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G52100", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GESCEDY", "url": "https://omabrowser.org/oma/group/GESCEDY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45888", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45888", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45888:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45888:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190778", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190778", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G52100", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G52100", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A178V841", "url": "https://www.uniprot.org/uniprotkb/A0A178V841", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A178V841-1", "url": "https://www.uniprot.org/uniprotkb/A0A178V841-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LRS3", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LRS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LRS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LRS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LRS5", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LRS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LRS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LRS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5R1", "url": "https://www.uniprot.org/uniprotkb/F4J5R1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5R1-1", "url": "https://www.uniprot.org/uniprotkb/F4J5R1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFHVACPITCRKICFCVLGFSRNLHGNEVKDVYLKEIHSLQEFVRNPWDAEVSKDGTVQIHVPKLAVFDTGPRIAARNVGVGSDSAMEVVAASSNLVPAKRTLVLQKKAVEVYAANDCSGDLEESVFVRKRVFSDVDYLYLVSVKDLNEEDHDHHSASITCHMCYLVEVGKSERAKMLSCKCCGKKYHRNCVKSWAQHRDLFNWSSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHCDCQHPRHKNVSSGPYLCPKHTKCYSCESTVPGNGQSLRWFLGHTCCDACGRLFVKGNYCPVCLKVYRDSEATPMVCCDFCQRWVHCQCDGISDEKYMQFQVDGNLQYKCSTCRGESYQVKDLEDAVQEIWKRKDMADKDLIASLKASARVVGQTGGAPLMNQPGSVERKVSEKAMVNGEEEKPLRVLRIKSSRPQDSDSEKFGKHATELSTVKAKKLVISIGPRKTGVTNSTSCDVSKTASKSNGKQEKLQAEETFSREERRSLLGKNSDEKRGSRGEVTTLKAEGGFIGRHSDGKGDLNSGSHDSSQKDSRRLLKLKIKKHNPEGQESEAPSIVYERSKSGKGHRSKRKRASPPAEKSAFNEDEDVSLSREDSLLDEMLDASWILKKLGKDAKGKKVQIHEASDDSWEKGVVSEVGGAGGTSKLMVTLENGKVKTVELGKQGVRFVPQKQKRTRT", "length": 696, "header": "tr|F4J5R1-1|F4J5R1_ARATH Isoform 1 of RING/FYVE/PHD-type zinc finger family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5R1-1" }, "isoforms": [ { "isoform_ac": "A0A178V841-1", "url": "https://www.uniprot.org/uniprotkb/F4J5R1/entry#A0A178V841-1", "sequence": { "sequence": "MAFHVACPITCRKICFCVLGFSRNLHGNEVKDVYLKEIHSLQEFVRNPWDAEVSKDGTVQIHVPKLAVFDTGPRIAARNVGVGSDSAMEVVAASSNLVPAKRTLVLQKKAVEVYAANDCSGDLEVSVKDLNEEDHDHHSASITCHMCYLVEVGKSERAKMLSCKCCGKKYHRNCVKSWAQHRDLFNWSSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHCDCQHPRHKNVSSGPYLCPKHTKCYSCESTVPGNGQSLRWFLGHTCCDACGRLFVKGNYCPVCLKVYRDSEATPMVCCDFCQRWVHCQCDGISDEKYMQFQVDGNLQYKCSTCRGESYQVKDLEDAVQEIWKRKDMADKDLIASLKASARVVGQTGGAPLMNQPGSVERKVSEKAMVNGEEEKPLRVLRIKSSRPQDSDSEKFGKHATELSTVKAKKLVISIGPRKTGVTNSTSCDVSKTASKSNGKQEKLQAEETFSREERRSLLGKNSDEKRGSRGEVTTLKAEGGFIGRHSDGKGDLNSGSHDSSQKDSRRLLKLKIKKHNPEGQESEAPSIVYERSKSGKGHRSKRKRASPPAEKSAFNEDEDVSLSREDSLLDEMLDASWILKKLGKDAKGKKVQIHEASDDSWEKGVVSEVGGAGGTSKLMVTLENGKVKTVELGKQGVRFVPQKQKRTRT", "length": 678, "header": "tr|A0A178V841-1|F4J5R1_ARATH Computationally mapped isoform of RING/FYVE/PHD-type zinc finger family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5R1-1" }, "locus": { "chromosome": "3", "start_pos": 19319223, "end_pos": 19322985, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52100.3", "url": "https://www.ensemblgenomes.org/id/AT3G52100.3" }, { "database": "Ensembl Peptide", "id": "AT3G52100.3", "url": "https://www.ensemblgenomes.org/id/AT3G52100.3" } ] } }, { "isoform_ac": "A0A1I9LRS3-1", "url": "https://www.uniprot.org/uniprotkb/F4J5R1/entry#A0A1I9LRS3-1", "sequence": { "sequence": "MAFHVACPITCRKICFCVLGFSRNLHGNEVKDVYLKEIHSLQEFVRNPWDAEVSKDGTVQIHVPKLAVFDTGPRIAARNVGVGSDSAMEVVAASSNLVPAKRTLVLQKKAVEVYAANDCSGDLEVSVKDLNEEDHDHHSASITCHMCYLVEVGKSERAKMLSCKCCGKKYHRNCVKSWAQHRDLFNWSSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHCDCQHPRHKNVSSGPYLCPKHTKCYSCESTVPGNGQSLRWFLGHTCCDACGRLFVKGNYCPVCLKVYRDSEATPMVCCDFCQRWVHCQCDGISDEKYMQFQVDGNLQYKCSTCRGESYQVKDLEDAVQEIWKRKDMADKDLIASLKASARVVGQTGGAPLMNQPGSVERKVSEKAMVNGEEEKPLRVLRIKSSRPQDSDSEKFGKHATELSTVKAKKLVISIGPRKTGVTNSTSCDVSKTASKSNGKQEKLQAEETFSREERRSLLGKNSDEKRGSRGEVTTLKAEGGFIGRHSDGKGDLNSGSHDSSQKDSRRLLKLKIKKHNPEGQESEAPSIVYERSKSGKGHRSKRKRASPPAEKSAFNEDEDVSLSREDSLLDEMLDASWILKKLGKDAKGKKVQIHEASDDSWYMRLYCFLLLNFFNYSKSLTNEEPKKQGERSCK", "length": 663, "header": "tr|A0A1I9LRS3-1|F4J5R1_ARATH Computationally mapped isoform of RING/FYVE/PHD-type zinc finger family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5R1-1" }, "locus": { "chromosome": "3", "start_pos": 19319223, "end_pos": 19322985, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52100.2", "url": "https://www.ensemblgenomes.org/id/AT3G52100.2" }, { "database": "Ensembl Peptide", "id": "AT3G52100.2", "url": "https://www.ensemblgenomes.org/id/AT3G52100.2" } ] } }, { "isoform_ac": "A0A1I9LRS5-1", "url": "https://www.uniprot.org/uniprotkb/F4J5R1/entry#A0A1I9LRS5-1", "sequence": { "sequence": "MEVVAASSNLVPAKRTLVLQKKAVEVYAANDCSGDLEVSVKDLNEEDHDHHSASITCHMCYLVEVGKSERAKMLSCKCCGKKYHRNCVKSWAQHRDLFNWSSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHCDCQHPRHKNVSSGPYLCPKHTKCYSCESTVPGNGQSLRWFLGHTCCDACGRLFVKGNYCPVCLKVYRDSEATPMVCCDFCQRWVHCQCDGISDEKYMQFQVDGNLQYKCSTCRGESYQVKDLEDAVQEIWKRKDMADKDLIASLKASARVVGQTGGAPLMNQPGSVERKVSEKAMVNGEEEKPLRVLRIKSSRPQDSDSEKFGKHATELSTVKAKKLVISIGPRKTGVTNSTSCDVSKTASKSNGKQEKLQAEETFSREERRSLLGKNSDEKRGSRGEVTTLKAEGGFIGRHSDGKGDLNSGSHDSSQKDSRRLLKLKIKKHNPEGQESEAPSIVYERSKSGKGHRSKRKRASPPAEKSAFNEDEDVSLSREDSLLDEMLDASWILKKLGKDAKGKKVQIHEASDDSWEKGVVSEVGGAGGTSKLMVTLENGKVKTVELGKQGVRFVPQKQKRTRT", "length": 591, "header": "tr|A0A1I9LRS5-1|F4J5R1_ARATH Computationally mapped isoform of RING/FYVE/PHD-type zinc finger family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5R1-1" }, "locus": { "chromosome": "3", "start_pos": 19319398, "end_pos": 19322985, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52100.4", "url": "https://www.ensemblgenomes.org/id/AT3G52100.4" }, { "database": "Ensembl Peptide", "id": "AT3G52100.4", "url": "https://www.ensemblgenomes.org/id/AT3G52100.4" } ] } }, { "isoform_ac": "F4J5R1-1", "url": "https://www.uniprot.org/uniprotkb/F4J5R1/entry#F4J5R1-1", "sequence": { "sequence": "MAFHVACPITCRKICFCVLGFSRNLHGNEVKDVYLKEIHSLQEFVRNPWDAEVSKDGTVQIHVPKLAVFDTGPRIAARNVGVGSDSAMEVVAASSNLVPAKRTLVLQKKAVEVYAANDCSGDLEESVFVRKRVFSDVDYLYLVSVKDLNEEDHDHHSASITCHMCYLVEVGKSERAKMLSCKCCGKKYHRNCVKSWAQHRDLFNWSSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHCDCQHPRHKNVSSGPYLCPKHTKCYSCESTVPGNGQSLRWFLGHTCCDACGRLFVKGNYCPVCLKVYRDSEATPMVCCDFCQRWVHCQCDGISDEKYMQFQVDGNLQYKCSTCRGESYQVKDLEDAVQEIWKRKDMADKDLIASLKASARVVGQTGGAPLMNQPGSVERKVSEKAMVNGEEEKPLRVLRIKSSRPQDSDSEKFGKHATELSTVKAKKLVISIGPRKTGVTNSTSCDVSKTASKSNGKQEKLQAEETFSREERRSLLGKNSDEKRGSRGEVTTLKAEGGFIGRHSDGKGDLNSGSHDSSQKDSRRLLKLKIKKHNPEGQESEAPSIVYERSKSGKGHRSKRKRASPPAEKSAFNEDEDVSLSREDSLLDEMLDASWILKKLGKDAKGKKVQIHEASDDSWEKGVVSEVGGAGGTSKLMVTLENGKVKTVELGKQGVRFVPQKQKRTRT", "length": 696, "header": "tr|F4J5R1-1|F4J5R1_ARATH Isoform 1 of RING/FYVE/PHD-type zinc finger family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5R1-1" }, "locus": { "chromosome": "3", "start_pos": 19319343, "end_pos": 19322773, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52100.1", "url": "https://www.ensemblgenomes.org/id/AT3G52100.1" }, { "database": "Ensembl Peptide", "id": "AT3G52100.1", "url": "https://www.ensemblgenomes.org/id/AT3G52100.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 497, "end_pos": 497, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A178V841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A178V841" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser497" }, { "start_pos": 509, "end_pos": 509, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A178V841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A178V841" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser509" }, { "start_pos": 593, "end_pos": 593, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A178V841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A178V841" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser593" }, { "start_pos": 608, "end_pos": 608, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A178V841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A178V841" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser608" }, { "start_pos": 86, "end_pos": 86, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A178V841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A178V841" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser86" }, { "start_pos": 94, "end_pos": 94, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A178V841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A178V841" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser94" }, { "start_pos": 95, "end_pos": 95, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A178V841", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A0A178V841" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], 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Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A178V841", "url": "https://www.uniprot.org/uniprotkb/A0A178V841" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": 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{ "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G52100", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G52100", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J5R1", "url": "https://www.uniprot.org/uniprotkb/F4J5R1" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F4J5R1", "url": "https://www.uniprot.org/uniprotkb/F4J5R1" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "F4J5R1", "url": 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"A0A1I9LLZ2-1", "url": "https://www.uniprot.org/uniprotkb/F4J5I0/entry#A0A1I9LLZ2-1", "sequence": { "sequence": "MLLFYMLICSLRERAQVEQLLRFIVEESPEDADSKRAFKFPFISSEVLTCEIDVILKTLVDEEELMNLLFSFLEPNRSHSVMLAGYFSKVVICLMLRKTVPLMNYVKAHQNVFQQLVDLIGITSIMEVLIRLVGADDHVYPNHLDVMQWLADSNLLEMIVDKLSPSNSLEVHANAAETLCTIAQNAPSPLATKLSSSSFVARIFGHAFEDPQSKSSLVHTLSVCISLLSPRRSVVSSPFMYSFRGQQIFESPISVNPETIATMLPRLGDFVALLNVTSDEKILPTTYGQLRPPLGSHRLKIVEFIAVLLKTRSEATGKELASSGAIRRVLDLFFEYPYNNALHHQVESIILSCLESKNDEIVDHLLRECDLIGKIIKTEKQPILSGDKQPTLAAAGKQAPRVGNVGHISRISNKLVQLSTNSNQIKTLLEENNDWGEWEANTLHDRNAVENVYRWVCGRPTALHDRTRDSDDDEVHDRDYDLAGLANNLNQFRYNMQENNGAGEEHGSNDRDEEDVYFDDESAEVVISSLRLGDEQANNLFTNSNWFTFQGDELGENTGTGAISSEEAMEDVSLNETSDGGDEEDEDEDCLITESKNPFVDSTAATASTSEAVSVDADIEIDEDVGTDELSPEWVERNDSSSAIAPGSTDDVKMPDVRIPNGSSSSEGEISPRSPPVPSLFGKDVEFVGVEPEGTERAMDQALKEGIVGEAGPMKRNTTTASPGKESPDDSMQEYNDTNYWKVDQEVTVVE", "length": 751, "header": "tr|A0A1I9LLZ2-1|F4J5I0_ARATH Computationally mapped isoform of SIT4 phosphatase-associated family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5I0-1" }, "locus": { "chromosome": "3", "start_pos": 16541669, "end_pos": 16548364, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G45190.2", "url": "https://www.ensemblgenomes.org/id/AT3G45190.2" }, { "database": "Ensembl Peptide", "id": "AT3G45190.2", "url": "https://www.ensemblgenomes.org/id/AT3G45190.2" } ] } }, { "isoform_ac": "F4J5I0-1", "url": "https://www.uniprot.org/uniprotkb/F4J5I0/entry#F4J5I0-1", "sequence": { "sequence": "MFWKLTALSAASPVESILDKEDFTLEELLDEEDIIQECRALNSRLINFLRERAQVEQLLRFIVEESPEDADSKRAFKFPFISSEVLTCEIDVILKTLVDEEELMNLLFSFLEPNRSHSVMLAGYFSKVVICLMLRKTVPLMNYVKAHQNVFQQLVDLIGITSIMEVLIRLVGADDHVYPNHLDVMQWLADSNLLEMIVDKLSPSNSLEVHANAAETLCTIAQNAPSPLATKLSSSSFVARIFGHAFEDPQSKSSLVHTLSVCISLLSPRRSVVSSPFMYSFRGQQIFESPISVNPETIATMLPRLGDFVALLNVTSDEKILPTTYGQLRPPLGSHRLKIVEFIAVLLKTRSEATGKELASSGAIRRVLDLFFEYPYNNALHHQVESIILSCLESKNDEIVDHLLRECDLIGKIIKTEKQPILSGDKQPTLAAAGKQAPRVGNVGHISRISNKLVQLSTNSNQIKTLLEENNDWGEWEANTLHDRNAVENVYRWVCGRPTALHDRTRDSDDDEVHDRDYDLAGLANNLNQFRYNMQENNGAGEEHGSNDRDEEDVYFDDESAEVVISSLRLGDEQANNLFTNSNWFTFQGDELGENTGTGAISSEEAMEDVSLNETSDGGDEEDEDEDCLITESKNPFVDSTAATASTSEAVSVDADIEIDEDVGTDELSPEWVERNDSSSAIAPGSTDDVKMPDVRIPNGSSSSEGEISPRSPPVPSLFGKDVEFVGVEPEGTERAMDQALKEGIVGEAGPMKRNTTTASPGKESPDDSMQEYNDTNYWKVDQEVTVVE", "length": 789, "header": "tr|F4J5I0-1|F4J5I0_ARATH Isoform 1 of SIT4 phosphatase-associated family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5I0-1" }, "locus": { "chromosome": "3", "start_pos": 16541615, "end_pos": 16548367, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G45190.1", "url": "https://www.ensemblgenomes.org/id/AT3G45190.1" }, { "database": "Ensembl Peptide", "id": "AT3G45190.1", "url": "https://www.ensemblgenomes.org/id/AT3G45190.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LLZ2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LLZ2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LLZ2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LLZ2" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LLZ2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LLZ2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G45190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G45190", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein phosphatase binding", "id": "GO:0019903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019903", "evidence": [ { "database": "UniProtKB", "id": "F4J5I0", "url": "https://www.uniprot.org/uniprotkb/F4J5I0" } ], "pmid": "" }, { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "F4J5I0", "url": "https://www.uniprot.org/uniprotkb/F4J5I0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J5I0", "url": "https://www.uniprot.org/uniprotkb/F4J5I0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4J5I0", "url": "https://www.uniprot.org/uniprotkb/F4J5I0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "F4J5I0", "url": "https://www.uniprot.org/uniprotkb/F4J5I0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 613, "end_pos": 615, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" }, { "start_pos": 699, "end_pos": 701, "annotation": "n_glycosylation_sequon" }, { "start_pos": 755, "end_pos": 757, "annotation": "n_glycosylation_sequon" }, { "start_pos": 774, "end_pos": 776, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J5I0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 789, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J5I0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J5I0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 313, "end_pos": 315 }, { "start_pos": 613, "end_pos": 615 }, { "start_pos": 676, "end_pos": 678 }, { "start_pos": 699, "end_pos": 701 }, { "start_pos": 755, "end_pos": 757 }, { "start_pos": 774, "end_pos": 776 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JBL2-1", "uniprot_ac": "F4JBL2", "uniprot_id": "F4JBL2_ARATH", "mass": { "chemical_mass": 36069.0, "monoisotopic_mass": 36069.0 }, "refseq": { "ac": "NP_974397", "name": "alpha/beta-Hydrolases superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974397" }, "gene_names": [], "protein_names": [ { "name": "Alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "F4JBL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JBL2/entry#names_and_taxonomy" } ] }, { "name": "alpha/beta-Hydrolases superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_974397", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974397" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JBL2", "url": "https://www.uniprot.org/uniprotkb/F4JBL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JBL2", "locus": {} } ], "crossref": [ { "id": "F4JBL2", "url": "https://alphafold.ebi.ac.uk/entry/F4JBL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G47560", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G47560", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "823910", "url": "https://www.ncbi.nlm.nih.gov/gene/823910", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G47560", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G47560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR42886", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42886", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42886:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42886:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12146", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12146", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_974397", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974397", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G47560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G47560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LMK8", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LMK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LMK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LMK8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LMK9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LMK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LMK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LMK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LML0", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LML0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LML0-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LML0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JBL2", "url": "https://www.uniprot.org/uniprotkb/F4JBL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JBL2-1", "url": "https://www.uniprot.org/uniprotkb/F4JBL2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SN82", "url": "https://www.uniprot.org/uniprotkb/Q9SN82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SN82-1", "url": "https://www.uniprot.org/uniprotkb/Q9SN82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSSQGSTQQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIMKNVAVAIEREGISAFRFDFSGNGYVFLSCIILNKLVFVLTLGLWCFHSFRESEGSFYYGNYNYEADDLHSVIQYFSNLNRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGEDFLERIKQQGYIDVKDGIVIALRFSCTVIRTLVLLSMYWFVTGDSGYRVTEESLMDRLNTDMHEACLKIDKECRVLTVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVMEFIKSHCEEKNDKTCN", "length": 318, "header": "tr|F4JBL2-1|F4JBL2_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBL2-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LMK8-1", "url": "https://www.uniprot.org/uniprotkb/F4JBL2/entry#A0A1I9LMK8-1", "sequence": { "sequence": "MDSSQGSTQQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIMKNVAVAIEREGISAFRFDFSGNGESEGSFYYGNYNYEADDLHSVIQYFSNLNRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGEDFLERIKQQGYIDVKDGIVIALRFSCTVIRTLVLLSMYWFVTGDSGYRVTEESLMDRLNTDMHEACLKIDKECRVLTVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVMEFIKSHCEEKNDKTCN", "length": 291, "header": "tr|A0A1I9LMK8-1|F4JBL2_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBL2-1" }, "locus": { "chromosome": "3", "start_pos": 17525476, "end_pos": 17527067, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47560.3", "url": "https://www.ensemblgenomes.org/id/AT3G47560.3" }, { "database": "Ensembl Peptide", "id": "AT3G47560.3", "url": "https://www.ensemblgenomes.org/id/AT3G47560.3" } ] } }, { "isoform_ac": "A0A1I9LMK9-1", "url": "https://www.uniprot.org/uniprotkb/F4JBL2/entry#A0A1I9LMK9-1", "sequence": { "sequence": "MINERSCGCPTLSFSTHALPLRRPKFPATNKVKKLRMDSSQGSTQQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIMKNVAVAIEREGISAFRFDFSGNGESEGSFYYGNYNYEADDLHSVIQYFSNLNRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGEDFLERIKQQGYIDVKDGDSGYRVTEESLMDRLNTDMHEACLKIDKECRVLTVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVMEFIKSHCEEKNDKTCN", "length": 301, "header": "tr|A0A1I9LMK9-1|F4JBL2_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBL2-1" }, "locus": { "chromosome": "3", "start_pos": 17525485, "end_pos": 17527162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47560.4", "url": "https://www.ensemblgenomes.org/id/AT3G47560.4" }, { "database": "Ensembl Peptide", "id": "AT3G47560.4", "url": "https://www.ensemblgenomes.org/id/AT3G47560.4" } ] } }, { "isoform_ac": "A0A1I9LML0-1", "url": "https://www.uniprot.org/uniprotkb/F4JBL2/entry#A0A1I9LML0-1", "sequence": { "sequence": "MDSSQGSTQQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIMKNVAVAIEREGISAFRFDFSGNGYVFLSCIILNKLVFVLTLGLWCFHSFRESEGSFYYGNYNYEADDLHSVIQYFSNLNRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGEDFLERIKQQGYIDVKDGDSGYRVTEESLMDRLNTDMHEACLKIDKECRVLTVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVMEFIKSHCEEKNDKTCN", "length": 292, "header": "tr|A0A1I9LML0-1|F4JBL2_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBL2-1" }, "locus": { "chromosome": "3", "start_pos": 17525486, "end_pos": 17527071, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47560.5", "url": "https://www.ensemblgenomes.org/id/AT3G47560.5" }, { "database": "Ensembl Peptide", "id": "AT3G47560.5", "url": "https://www.ensemblgenomes.org/id/AT3G47560.5" } ] } }, { "isoform_ac": "F4JBL2-1", "url": "https://www.uniprot.org/uniprotkb/F4JBL2/entry#F4JBL2-1", "sequence": { "sequence": "MDSSQGSTQQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIMKNVAVAIEREGISAFRFDFSGNGYVFLSCIILNKLVFVLTLGLWCFHSFRESEGSFYYGNYNYEADDLHSVIQYFSNLNRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGEDFLERIKQQGYIDVKDGIVIALRFSCTVIRTLVLLSMYWFVTGDSGYRVTEESLMDRLNTDMHEACLKIDKECRVLTVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVMEFIKSHCEEKNDKTCN", "length": 318, "header": "tr|F4JBL2-1|F4JBL2_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBL2-1" }, "locus": { "chromosome": "3", "start_pos": 17525486, "end_pos": 17526978, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47560.2", "url": "https://www.ensemblgenomes.org/id/AT3G47560.2" }, { "database": "Ensembl Peptide", "id": "AT3G47560.2", "url": "https://www.ensemblgenomes.org/id/AT3G47560.2" } ] } }, { "isoform_ac": "Q9SN82-1", "url": "https://www.uniprot.org/uniprotkb/F4JBL2/entry#Q9SN82-1", "sequence": { "sequence": "MDSSQGSTQQKIVILNSHNENLVGLLHETGSTEIVVLCHGFRSNKNFEIMKNVAVAIEREGISAFRFDFSGNGESEGSFYYGNYNYEADDLHSVIQYFSNLNRVVTIILGHSKGGDVVLLYASKYHDIPNVINLSGRYDLKKGIGERLGEDFLERIKQQGYIDVKDGDSGYRVTEESLMDRLNTDMHEACLKIDKECRVLTVHGSGDETVPVEDAKEFAKIIPNHELQIVEGADHCYTNYQSQLVLTVMEFIKSHCEEKNDKTCN", "length": 265, "header": "tr|Q9SN82-1|F4JBL2_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBL2-1" }, "locus": { "chromosome": "3", "start_pos": 17525476, "end_pos": 17527067, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47560.1", "url": "https://www.ensemblgenomes.org/id/AT3G47560.1" }, { "database": "Ensembl Peptide", "id": "AT3G47560.1", "url": "https://www.ensemblgenomes.org/id/AT3G47560.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9SN82", "url": "https://www.uniprot.org/uniprotkb/Q9SN82" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. Cell. Proteomics", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "Q9SN82", "url": "https://www.uniprot.org/uniprotkb/Q9SN82" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9SN82", "url": "https://www.uniprot.org/uniprotkb/Q9SN82" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G47560", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G47560", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4JBL2", "url": "https://www.uniprot.org/uniprotkb/F4JBL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JBL2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JBL2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JBL2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JBL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JBL2" }, { "id": "PF12146", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12146" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serine aminopeptidase S33", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 164, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J6Y4-1", "uniprot_ac": "F4J6Y4", "uniprot_id": "F4J6Y4_ARATH", "mass": { "chemical_mass": 24888.0, "monoisotopic_mass": 24888.0 }, "refseq": { "ac": "NP_190819", "name": "F-box associated ubiquitination effector family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190819" }, "gene_names": [], "protein_names": [ { "name": "F-box associated ubiquitination effector family protein", "type": "synonym", "evidence": [ { "id": "NP_190819", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190819" }, { "id": "F4J6Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6Y4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J6Y4", "url": "https://www.uniprot.org/uniprotkb/F4J6Y4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J6Y4", "locus": {} } ], "crossref": [ { "id": "F4J6Y4", "url": "https://alphafold.ebi.ac.uk/entry/F4J6Y4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G52510", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G52510", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824416", "url": "https://www.ncbi.nlm.nih.gov/gene/824416", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G52510", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G52510", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DFESIMY", "url": "https://omabrowser.org/oma/group/DFESIMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31111:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31111:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08268", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08268", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190819", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190819", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G52510", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G52510", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LNE3", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNE3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6Y4", "url": "https://www.uniprot.org/uniprotkb/F4J6Y4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6Y4-1", "url": "https://www.uniprot.org/uniprotkb/F4J6Y4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSEQCCLCVRLGRRVRICNLTTKQLLRKVWEVSKEDGQMRSEHQVLVLGPGAYWRSTYSNAPPPPHRPFSQGISINGMLYYGAAWVDANKCVLVSFDLTFEEFNLIELPVEAGIIWHSYRANLVNYRDKLDIFEYSKLAVDASVDLRVMEDVKKKKKWSKKTLVLPLDQMNVVHGDDLVLPGTSRCVQLRLGKKHLFLYFIFKFCIVLSELSLNC", "length": 216, "header": "tr|F4J6Y4-1|F4J6Y4_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6Y4-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LNE3-1", "url": "https://www.uniprot.org/uniprotkb/F4J6Y4/entry#A0A1I9LNE3-1", "sequence": { "sequence": "MIHEQFTSILGRRVRICNLTTKQLLRKVWEVSKEDGQMRSEHQVLVLGPGAYWRSTYSNAPPPPHRPFSQGISINGMLYYGAAWVDANKCVLVSFDLTFEEFNLIELPVEAGIIWHSYRANLVNYRDKLDIFEYSKLAVDASVDLRVMEDVKKKKKWSKKTLVLPLDQMNVVHGDDLVLPGTSRCVQLRLGKKHLFLYFIFKFCIVLSELSLNC", "length": 214, "header": "tr|A0A1I9LNE3-1|F4J6Y4_ARATH Computationally mapped isoform of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6Y4-1" }, "locus": { "chromosome": "3", "start_pos": 19469652, "end_pos": 19470813, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52510.2", "url": "https://www.ensemblgenomes.org/id/AT3G52510.2" }, { "database": "Ensembl Peptide", "id": "AT3G52510.2", "url": "https://www.ensemblgenomes.org/id/AT3G52510.2" } ] } }, { "isoform_ac": "F4J6Y4-1", "url": "https://www.uniprot.org/uniprotkb/F4J6Y4/entry#F4J6Y4-1", "sequence": { "sequence": "MKSEQCCLCVRLGRRVRICNLTTKQLLRKVWEVSKEDGQMRSEHQVLVLGPGAYWRSTYSNAPPPPHRPFSQGISINGMLYYGAAWVDANKCVLVSFDLTFEEFNLIELPVEAGIIWHSYRANLVNYRDKLDIFEYSKLAVDASVDLRVMEDVKKKKKWSKKTLVLPLDQMNVVHGDDLVLPGTSRCVQLRLGKKHLFLYFIFKFCIVLSELSLNC", "length": 216, "header": "tr|F4J6Y4-1|F4J6Y4_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6Y4-1" }, "locus": { "chromosome": "3", "start_pos": 19469551, "end_pos": 19470378, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52510.1", "url": "https://www.ensemblgenomes.org/id/AT3G52510.1" }, { "database": "Ensembl Peptide", "id": "AT3G52510.1", "url": "https://www.ensemblgenomes.org/id/AT3G52510.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LNE3", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNE3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen 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542, "header": "tr|Q9SF25-1|F4J7F3_ARATH Computationally mapped isoform of Polyketide cyclase/dehydrase and lipid transport superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J7F3-1" }, "locus": { "chromosome": "3", "start_pos": 3705759, "end_pos": 3708632, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G11720.2", "url": "https://www.ensemblgenomes.org/id/AT3G11720.2" }, { "database": "Ensembl Peptide", "id": "AT3G11720.2", "url": "https://www.ensemblgenomes.org/id/AT3G11720.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 149, "end_pos": 149, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SF25", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SF25" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr149" }, { "start_pos": 446, "end_pos": 446, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SF25", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SF25" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser446" }, { "start_pos": 477, "end_pos": 477, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SF25", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SF25" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ], "site_lbl": "Ser477" } ], "glycation": [], "keywords": [], "publication": [ 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}, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JF82-1", "uniprot_ac": "F4JF82", "uniprot_id": "F4JF82_ARATH", "mass": { "chemical_mass": 91754.0, "monoisotopic_mass": 91754.0 }, "refseq": { "ac": "NP_001319752", "name": "Ypt/Rab-GAP domain of gyp1p superfamily protein", "summary": "", "url": 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"https://alphafold.ebi.ac.uk/entry/F4JF82", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G55020", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G55020", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824668", "url": "https://www.ncbi.nlm.nih.gov/gene/824668", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G55020", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G55020", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RMPEKWK", "url": "https://omabrowser.org/oma/group/RMPEKWK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001319752", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319752", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G55020", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G55020", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LNZ8", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNZ9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LNZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LNZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JF82", "url": "https://www.uniprot.org/uniprotkb/F4JF82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JF82-1", "url": "https://www.uniprot.org/uniprotkb/F4JF82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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}, "isoforms": [ { "isoform_ac": "A0A1I9LNZ8-1", "url": "https://www.uniprot.org/uniprotkb/F4JF82/entry#A0A1I9LNZ8-1", "sequence": { "sequence": "MRSVAAAAAAAAAASKPSNPLVAFEHKRDAYGFPVRPQHVQRYREYADIYKEEEEERSDRWSSFLEDHVESTELPTNGSSENIHAPFSESEKEKEKELNKGPGEDLHTDKLGSDVTPDNASEEEGHPDAEKNVHRVQLWTEIRPSLRSIEDLMSIRVKKKGDLSKSEQEAPKVKISPSFDDAKSSKGASDIDSEDEFYDVERSDVQDGSSSDGTGVSGIPVAADASPLSTCPWKEELEVLIRGGVPMALRGELWQAFVGVRKRRCKDYYQNLLAADGSVNTIEQEDMQHVDDKGSSTESIAVVEKWKGQIEKDLPRTFPGHPALDDDGRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEENAFWALIGLIDDYFNGYYSEEMIESQVDQLVLEELVRERFPKLVHHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWDVLLFEGTRVMLFRTALALMELYGPALVTTKDAGDAVTLLQSLTGSTFDSSQLVLTACMGYQNVHEIRLQELRSKHRPAVIAALEERSKGLQAWRDSKGLASKLYNFKQDPKSVLVDSKASLSNGSLSRSESGSSNADEVLVSLTGDGEVDSVQDLQAQVLWLKAELCKLLEEKRSALLRAEELEIALMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDKQEQEGAMLQVLMRVEQEQKVTEDARIFAEQDAEAQRYAAQVLQEKYEEAVAALAEMEKRAVMAESMLEATLQYQSGQLKAQPSPRCVLFT", "length": 756, "header": "tr|A0A1I9LNZ8-1|F4JF82_ARATH Computationally mapped isoform of Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JF82-1" }, "locus": { "chromosome": "3", "start_pos": 20388869, "end_pos": 20394987, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G55020.3", "url": "https://www.ensemblgenomes.org/id/AT3G55020.3" }, { "database": "Ensembl Peptide", "id": "AT3G55020.3", "url": "https://www.ensemblgenomes.org/id/AT3G55020.3" } ] } }, { "isoform_ac": "A0A1I9LNZ9-1", "url": "https://www.uniprot.org/uniprotkb/F4JF82/entry#A0A1I9LNZ9-1", "sequence": { "sequence": 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"end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 116, 121, 176, 178, 184, 189, 193, 571, 573 ], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 569, "end_pos": 571 }, { "start_pos": 77, "end_pos": 79 }, { "start_pos": 783, "end_pos": 785 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 9 }, { "field": "total_sites", "count": 9 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J4G2-1", "uniprot_ac": "F4J4G2", "uniprot_id": "F4J4G2_ARATH", "mass": { "chemical_mass": 93302.0, "monoisotopic_mass": 93302.0 }, "refseq": { "ac": "NP_850678", "name": "PAP/OAS1 substrate-binding domain superfamily", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850678" }, "gene_names": [ { "name": "NTP6", "type": "recommended", "evidence": [ { "id": "F4J4G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J4G2" } ] }, { "name": "T18N14.7", "type": "synonym", "evidence": [ { "id": "NP_850678", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850678" }, { "id": "F4J4G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J4G2" } ] } ], "protein_names": [ { "name": "PAP/OAS1 substrate-binding domain superfamily", "type": "synonym", "evidence": [ { "id": "NP_850678", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850678" }, { "id": "F4J4G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J4G2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J4G2", "url": "https://www.uniprot.org/uniprotkb/F4J4G2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "NTP6", "url": "https://www.uniprot.org/uniprotkb/F4J4G2", "locus": {} } ], "crossref": [ { "id": "F4J4G2", "url": "https://alphafold.ebi.ac.uk/entry/F4J4G2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G51620", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G51620", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd05402", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05402", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "824325", "url": "https://www.ncbi.nlm.nih.gov/gene/824325", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G51620", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G51620", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RTFPPKH", "url": "https://omabrowser.org/oma/group/RTFPPKH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45979", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45979", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45979:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45979:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22600", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26180", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26180", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_850678", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850678", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G51620", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G51620", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LP98", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LP98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LP98-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LP98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4G2", "url": "https://www.uniprot.org/uniprotkb/F4J4G2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4G2-1", "url": "https://www.uniprot.org/uniprotkb/F4J4G2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4G3", "url": "https://www.uniprot.org/uniprotkb/F4J4G3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4G3-1", "url": "https://www.uniprot.org/uniprotkb/F4J4G3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAADLDDLEEESSSSLSPPLLPPPRSPLNQPELWMRVEEATREIIEQVHPTLVSEDRRRDVILYVQKLIRMTLGCEVHSFGSVPLKTYLPDGDIDLTAFGGLYHEEELAAKVFAVLEREEHNLSSQFVVKDVQLIRAEVKLVKCLVQNIVVDISFNQIGGICTLCFLEKIDHLIGKDHLFKRSIILIKAWCYYESRILGAFHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVCLSSLPDIVVETPENGGEDLLLTSEFLKECLEMYSVPSRGFETNPRGFQSKHLNIVDPLKETNNLGRSVSKGNFYRIRSAFTYGARKLGQLFLQSDEAISSELRKFFSNMLLRHGSGQRPDVHDAIPFLRYNRYNAILPASNHFQEGQVVNESESSSSSGATGNGRHDQEDSLDAGVSIPSTTGPDLSGSPGETVPSVSEERFSGDAKDLATLRIQKLEISDDAMKSPCLSDKESDSPLNGKHHSFNQMRNGEVLNGNGVGKQQENSWHTGSRRVKDIHINENENEHVGYEDLPFASAVPWPQEDMHLHYSGHCVSGTPNMLSDLSGDYESQLNSLRFGRWWFDYVQNGPMSPLSPPGLPQLPNNNSWEVMRHALPFRRNAPTPVNANGVVPRQVFFHVNPQMIPGPGFGIEELPKPRGTGTYFPNANHYRDRPFSPRGRNSHQARSPRNNGRSMSQAHSEMNFPDRNTRERQLHYPNQTNGSCDMSHTDSLDSFPDTNGSTNHPYEKAPDFRPTEPLPVEVLSPPEDSKPRDSIEGHHNRPHRPKPRPSSTQEERVTPTQSYHLTDDDEFPPL", "length": 829, "header": "tr|F4J4G2-1|F4J4G2_ARATH Isoform 1 of PAP/OAS1 substrate-binding domain superfamily OS=Arabidopsis thaliana OX=3702 GN=NTP6 PE=1 SV=1 CANONICAL=F4J4G2-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LP98-1", "url": "https://www.uniprot.org/uniprotkb/F4J4G2/entry#A0A1I9LP98-1", "sequence": { "sequence": "MAADLDDLEEESSSSLSPPLLPPPRSPLNQPELWMRVEEATREIIEQVHPTLVSEDRRRDVILYVQKLIRMTLGCEVHSFGSVPLKTYLPDGDIDLTAFGGLYHEEELAAKVFAVLEREEHNLSSQFVVKDVQLIRAEVKLVKCLVQNIVVDISFNQIGGICTLCFLEKIDHLIGKDHLFKRSIILIKAWCYYESRILGAFHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVCLSSLPDIVVETPENGGEDLLLTSEFLKECLEMYSVPSRGFETNPRGFQSKHLNIVDPLKETNNLGRSVSKGNFYRIRSAFTYGARKLGQLFLQSDEAISSELRKFFSNMLLRHGSGQRPDVHDAIPFLRYNRYNAILPASNHFQEGQVVNESESSSSSGATGNGRHDQEDSLDAGVSIPSTTGPDLSGSPGETVPSVSEERFSGDAKDLATLRIQKLEISDDAMKSPCLSDKESDSPLNGKHHSFNQMRNGEVLNGNGVGKQQENSWHTGSRRVKDIHINENENEHVGYEDLPFASAVPWPQEDMHLHYSGHCVSGTPNMLSDLSGDYESQLNSLRFGRWWFDYVQNGPMSPLSPPGLPQLPNNNSWEVMRHALPFRRNAPTPVNANGVVPRQVFFHVNPQMIPGPGFGIEELPKPRGTGTYFPNANHYRDRPFSPRGRNSHQARSPRNNGRSMSQAHSEMNFPDRNTRERQLHYPNQTNGSCDMSHTDSLDSFPDTNGSTNHPYEKAPDFRPTEPLPVEVLSPPEDSKPRDSIEGHHNRPHRPKPRPSSTQEERDVHVG", "length": 816, "header": "tr|A0A1I9LP98-1|F4J4G2_ARATH Computationally mapped isoform of PAP/OAS1 substrate-binding domain superfamily OS=Arabidopsis thaliana OX=3702 GN=NTP6 PE=1 SV=1 CANONICAL=F4J4G2-1" }, "locus": { "chromosome": "3", "start_pos": 19143334, "end_pos": 19148244, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G51620.3", "url": "https://www.ensemblgenomes.org/id/AT3G51620.3" }, { "database": "Ensembl Peptide", "id": "AT3G51620.3", "url": "https://www.ensemblgenomes.org/id/AT3G51620.3" } ] } }, { "isoform_ac": "F4J4G2-1", "url": "https://www.uniprot.org/uniprotkb/F4J4G2/entry#F4J4G2-1", "sequence": { "sequence": "MAADLDDLEEESSSSLSPPLLPPPRSPLNQPELWMRVEEATREIIEQVHPTLVSEDRRRDVILYVQKLIRMTLGCEVHSFGSVPLKTYLPDGDIDLTAFGGLYHEEELAAKVFAVLEREEHNLSSQFVVKDVQLIRAEVKLVKCLVQNIVVDISFNQIGGICTLCFLEKIDHLIGKDHLFKRSIILIKAWCYYESRILGAFHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVCLSSLPDIVVETPENGGEDLLLTSEFLKECLEMYSVPSRGFETNPRGFQSKHLNIVDPLKETNNLGRSVSKGNFYRIRSAFTYGARKLGQLFLQSDEAISSELRKFFSNMLLRHGSGQRPDVHDAIPFLRYNRYNAILPASNHFQEGQVVNESESSSSSGATGNGRHDQEDSLDAGVSIPSTTGPDLSGSPGETVPSVSEERFSGDAKDLATLRIQKLEISDDAMKSPCLSDKESDSPLNGKHHSFNQMRNGEVLNGNGVGKQQENSWHTGSRRVKDIHINENENEHVGYEDLPFASAVPWPQEDMHLHYSGHCVSGTPNMLSDLSGDYESQLNSLRFGRWWFDYVQNGPMSPLSPPGLPQLPNNNSWEVMRHALPFRRNAPTPVNANGVVPRQVFFHVNPQMIPGPGFGIEELPKPRGTGTYFPNANHYRDRPFSPRGRNSHQARSPRNNGRSMSQAHSEMNFPDRNTRERQLHYPNQTNGSCDMSHTDSLDSFPDTNGSTNHPYEKAPDFRPTEPLPVEVLSPPEDSKPRDSIEGHHNRPHRPKPRPSSTQEERVTPTQSYHLTDDDEFPPL", "length": 829, "header": "tr|F4J4G2-1|F4J4G2_ARATH Isoform 1 of PAP/OAS1 substrate-binding domain superfamily OS=Arabidopsis thaliana OX=3702 GN=NTP6 PE=1 SV=1 CANONICAL=F4J4G2-1" }, "locus": { "chromosome": "3", "start_pos": 19143334, "end_pos": 19148244, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G51620.2", "url": "https://www.ensemblgenomes.org/id/AT3G51620.2" }, { "database": "Ensembl Peptide", "id": "AT3G51620.2", "url": "https://www.ensemblgenomes.org/id/AT3G51620.2" } ] } }, { "isoform_ac": "F4J4G3-1", "url": "https://www.uniprot.org/uniprotkb/F4J4G2/entry#F4J4G3-1", "sequence": { "sequence": "MAADLDDLEEESSSSLSPPLLPPPRSPLNQPELWMRVEEATREIIEQVHPTLVSEDRRRDVILYVQKLIRMTLGCEVHSFGSVPLKTYLPDGDIDLTAFGGLYHEEELAAKVFAVLEREEHNLSSQFVVKDVQLIRAEVKLVKCLVQNIVVDISFNQIGGICTLCFLEKVLYKFLDYFSKFDWDSYCISLNGPVCLSSLPDIVVETPENGGEDLLLTSEFLKECLEMYSVPSRGFETNPRGFQSKHLNIVDPLKETNNLGRSVSKGNFYRIRSAFTYGARKLGQLFLQSDEAISSELRKFFSNMLLRHGSGQRPDVHDAIPFLRYNRYNAILPASNHFQEGQVVNESESSSSSGATGNGRHDQEDSLDAGVSIPSTTGPDLSGSPGETVPSVSEERFSGDAKDLATLRIQKLEISDDAMKSPCLSDKESDSPLNGKHHSFNQMRNGEVLNGNGVGKQQENSWHTGSRRVKDIHINENENEHVGYEDLPFASAVPWPQEDMHLHYSGHCVSGTPNMLSDLSGDYESQLNSLRFGRWWFDYVQNGPMSPLSPPGLPQLPNNNSWEVMRHALPFRRNAPTPVNANGVVPRQVFFHVNPQMIPGPGFGIEELPKPRGTGTYFPNANHYRDRPFSPRGRNSHQARSPRNNGRSMSQAHSEMNFPDRNTRERQLHYPNQTNGSCDMSHTDSLDSFPDTNGSTNHPYEKAPDFRPTEPLPVEVLSPPEDSKPRDSIEGHHNRPHRPKPRPSSTQEERDVHVG", "length": 755, "header": "tr|F4J4G3-1|F4J4G3_ARATH Computationally mapped isoform of PAP/OAS1 substrate-binding domain superfamily OS=Arabidopsis thaliana OX=3702 GN=NTP6 PE=1 SV=1 CANONICAL=F4J4G2-1" }, "locus": { "chromosome": "3", "start_pos": 19143652, "end_pos": 19148242, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G51620.1", "url": "https://www.ensemblgenomes.org/id/AT3G51620.1" }, { "database": "Ensembl Peptide", "id": "AT3G51620.1", "url": "https://www.ensemblgenomes.org/id/AT3G51620.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 486, "end_pos": 486, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J4G2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J4G2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser486" }, { "start_pos": 492, "end_pos": 492, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J4G2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J4G2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser492" }, { "start_pos": 779, "end_pos": 779, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J4G2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J4G2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser779" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser 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OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J434-1" }, "locus": { "chromosome": "3", "start_pos": 8418778, "end_pos": 8422916, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G23480.2", "url": "https://www.ensemblgenomes.org/id/AT3G23480.2" }, { "database": "Ensembl Peptide", "id": "AT3G23480.2", "url": "https://www.ensemblgenomes.org/id/AT3G23480.2" } ] } }, { "isoform_ac": "F4J435-1", "url": "https://www.uniprot.org/uniprotkb/F4J434/entry#F4J435-1", "sequence": { "sequence": "MVIARGLLGIQTTLVKNMQHMVFSLTEAGARLFVTRFFRQFISIGCVTILEGDTIFIFGENESTCPLKSILKIHSPQFYWKVMTLADLGLADAYINGDFSFVDKDSGLLNLIMILIANRDLNSRKSNLAKKRGWWTPVFLTASLASATYYLKHVCRQNTLTQARRNVSSHYDLSNEFFGLFMDDTMMYSSAVFKSENENLRTAQMRKIHLLIEKDKEEPYEVLEIGCGWGTLAIEVVKRTGCKYTGFTLSIEQLKYVEEKVKEAGLQERITFKLCDYRQLCDTQKYDRIISCEMIEHVGHKFMETFFSHCEAALAEDGIFVLQFTAIPEELYDESRLTSGFITEYIFPGGCLPSLARVTSAMASSSRLCIENVENIGIHYYPTLRYWRKNLLERQKQIIDLGFDEKFLRTWEYYFDYCAAGFKTLTLRNYQVTHTHSSTLTRNITML", "length": 447, "header": "tr|F4J435-1|F4J435_ARATH Computationally mapped isoform of Cyclopropane-fatty-acyl-phospholipid synthase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J434-1" }, "locus": { "chromosome": "3", "start_pos": 8418801, "end_pos": 8422975, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G23480.1", "url": "https://www.ensemblgenomes.org/id/AT3G23480.1" }, { "database": "Ensembl Peptide", "id": "AT3G23480.1", "url": "https://www.ensemblgenomes.org/id/AT3G23480.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LPR7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPR7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LPR7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPR7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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"authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LPS9", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LPS9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JCM7-1", "uniprot_ac": "F4JCM7", "uniprot_id": "F4JCM7_ARATH", "mass": { "chemical_mass": 150877.0, "monoisotopic_mass": 150877.0 }, "refseq": { "ac": "NP_001190004", "name": "Transducin family protein / WD-40 repeat family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190004" }, "gene_names": [], "protein_names": [ { "name": "Transducin family protein / WD-40 repeat family protein", "type": "synonym", "evidence": [ { "id": "NP_001190004", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190004" }, { "id": "F4JCM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JCM7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JCM7", "url": "https://www.uniprot.org/uniprotkb/F4JCM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JCM7", "locus": {} } ], "crossref": [ { "id": "F4JCM7", "url": "https://alphafold.ebi.ac.uk/entry/F4JCM7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G33530", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G33530", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "823149", "url": "https://www.ncbi.nlm.nih.gov/gene/823149", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057852", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057852", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057854", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057854", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G33530", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G33530", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WDTKEIQ", "url": "https://omabrowser.org/oma/group/WDTKEIQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14593", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14593", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14593:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14593:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23751", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23751", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001190004", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190004", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G33530", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G33530", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LQ09", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LQ09-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LQ10", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LQ10-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ10-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JCM5", "url": "https://www.uniprot.org/uniprotkb/F4JCM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JCM5-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JCM6", "url": "https://www.uniprot.org/uniprotkb/F4JCM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JCM6-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JCM7", "url": "https://www.uniprot.org/uniprotkb/F4JCM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JCM7-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASKPSPTDTWDSTLPGPPSRNNFGSADLSPSGLFAFASGSSVSVVDSRSLQLVSTIPLPPPPGALSPFVTSVRWIPLPLPRDLLSTEPSASHLLLAVADRHGRVALVDFHLRSVVVWLNPSSDPKLGIQDLCWVQARHDSHVLAAISGSSFLSLYTTSGGLFWKYDAGTEILSCLRRDPYDSRHFCVLGLKGFLLSVKVLGDSENDVVIQEMQIKTDFSELPRLEREAASNGNSSSSSPASAAFPLYFARFAFSPHWKNILFVTFPRELLVFDLQYETPLSTTPLPRGCAKFLDILPDPNKELLYCGHVDGRLSIWRRKEGEQVHVMCTMEEFMPSIGMSIPSPSALAVLLSHSDSTMQTITKIHPDGTSSIDFDNPFDFYDESLLVSKTTFISLSDDGKIWKWVLSAEGVEDALKNASDLDMGIGATEAALPGAIQENDSSSLDDELVVAPTNRSRGHTSGSSMEKSDLSFKKFGVTRAYTCLLRSMQISLTGQLQLLSSTVSTLAVPSPSLTATLARGGNIPAAAVPLVALGTQSGTIDVVDVSTNAVAASTSVHTGVVRGLRWLGNSRLVSFSYSQVNDKSRGYINRLVVTCLRSGLNKPFRDLQKPERTPIRALRTSSSGRSSRILLHYFKDEELLYLLILFRDAPVEVWAMTKHPVMLRSLALPFTVVEWTLPAVPRPGQGGPSKQSLSASEGVTASGDSSSVGSDGSQEETVESFAFALVNGALGVFEVQGRRIRDFRPKWPSTSFVPSDGLVTAMAYRLPHVVMGDRSGNIRWWDVTTGQSSAFNSHRDGIRRIKFSPVVAGDRSRGRVAVLFNDNTFSVFDLVSLKRIQYFPSICAHVLWFQRWCTNIDSPDPLAQSLLQPQIPGTLVLELDWLPLRTDKNDPLVLCIAGADSTFRLVEVTVNEKKAGFVPQSKSVKERFRPMPMYSPILLPVPHALALRMILQLGVKPSWFNTSSTTLEKRPHLIRGMASSSKDLRSYMIQLPPLGDPVVPEMLLKILEPYRKEGCLLDDERAKLYADVVKKGYAARFAFAASVFGETSEALFWLQLPQAIRHLMNKLTRRSPQKISSPTLDSGADEVAMPSKIPSTGLSSPEARKIDSMCDGSLRLMAFEREELRTRANERLPWHEKLDGEDCIQKQVHELISVGNLEAAVSLLLSSAPDSPYFYPNALRAVALASAVSKSLLDLALKVVAANMVRTDNSLTGTHLLCAVGRHQEACSQLQDSGRWTDAATLAATHLEGSDYARVLQRWADHVLHAEHNVWRALILYVAAGSLQEALAALREVQQPDTVAMFVLACQEIHSEIITELSTQDEESESASGDGTVPLPDLPGLESGKEEVTAVCEYFQQYQRKLVHLCMDSQPYTD", "length": 1376, "header": "tr|F4JCM7-1|F4JCM7_ARATH Isoform 1 of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JCM7-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LQ09-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM7/entry#A0A1I9LQ09-1", "sequence": { "sequence": "MAASKPSPTDTWDSTLPGPPSRNNFGSADLSPSGLFAFASGSSVSVVDSRSLQLVSTIPLPPPPGALSPFVTSVRWIPLPLPRDLLSTEPSASHLLLAVADRHGRVALVDFHLRSVVVWLNPSSDPKLGIQDLCWVQARHDSHVLAAISGSSFLSLYTTSGGLFWKYDAGTEILSCLRRDPYDSRHFCVLGLKGFLLSVKVLGDSENDVVIQEMQIKTDFSELPRLEREAASNGNSSSSSPASAAFPLYFARFAFSPHWKNILFVTFPRELLVFDLQYETPLSTTPLPRGCAKFLDILPDPNKELLYCGHVDGRLSIWRRKEGEQVHVMCTMEEFMPSIGMSIPSPSALAVLLSHSDSTMQTITKIHPDGTSSIDFDNPFDFYDESLLVSKTTFISLSDDGKIWKWVLSAEGVEDALKNASDLDMGIGATEAALPGAIQENDSSSLDDELVVAPTNRSRGHTSGSSMEKSDLSFKISLTGQLQLLSSTVSTLAVPSPSLTATLARGGNIPAAAVPLVALGTQSGTIDVVDVSTNAVAASTSVHTGVVRGLRWLGNSRLVSFSYSQVNDKSRGYINRLVVTCLRSGLNKPFRDLQKPERTPIRALRTSSSGRYLLILFRDAPVEVWAMTKHPVMLRSLALPFTVVEWTLPAVPRPGQGGPSKQSLSASEGVTASGDSSSVGSDGSQEETVESFAFALVNGALGVFEVQGRRIRDFRPKWPSTSFVPSDGLVTAMAYRLPHVVMGDRSGNIRWWDVTTGQSSAFNSHRDGIRRIKFSPVVAGDRSRGRVAVLFNDNTFSVFDLDSPDPLAQSLLQPQIPGTLVLELDWLPLRTDKNDPLVLCIAGADSTFRLVEVTVNEKKAGFVPQSKSVKERFRPMPMYSPILLPVPHALALRMILQLGVKPSWFNTSSTTLEKRPHLIRGMASSSKDLRSYMIQLPPLGDPVVPEMLLKILEPYRKEGCLLDDERAKLYADVVKKGYAARFAFAASVFGETSEALFWLQLPQAIRHLMNKLTRRSPQKISSPTLDSGADEVAMPSKIPSTGLSSPEARKIDSMCDGSLRLMAFEREELRTRANERLPWHEKLDGEDCIQKQVHELISVGNLEAAVSLLLSSAPDSPYFYPNALRAVALASAVSKSLLDLALKVVAANMVRTDNSLTGTHLLCAVGRHQEACSQLQDSGRWTDAATLAATHLEGSDYARVLQRWADHVLHAEHNVWRALILYVAAGSLQEALAALREVQQPDTVAMFVLACQEIHSEIITELSTQDEESESASGDGTVPLPDLPGLESGKEEVTAVCEYFQQYQRKLVHLCMDSQPYTD", "length": 1319, "header": "tr|A0A1I9LQ09-1|F4JCM7_ARATH Computationally mapped isoform of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JCM7-1" }, "locus": { "chromosome": "3", "start_pos": 14085248, "end_pos": 14093636, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G33530.4", "url": "https://www.ensemblgenomes.org/id/AT3G33530.4" }, { "database": "Ensembl Peptide", "id": "AT3G33530.4", "url": "https://www.ensemblgenomes.org/id/AT3G33530.4" } ] } }, { "isoform_ac": "A0A1I9LQ10-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM7/entry#A0A1I9LQ10-1", "sequence": { "sequence": "MAASKPSPTDTWDSTLPGPPSRNNFGSADLSPSGLFAFASGSSVSVVDSRSLQLVSTIPLPPPPGALSPFVTSVRWIPLPLPRDLLSTEPSASHLLLAVADRHGRVALVDFHLRSVVVWLNPSSDPKLGIQDLCWVQARHDSHVLAAISGSSFLSLYTTSGGLFWKYDAGTEILSCLRRDPYDSRHFCVLGLKGFLLSVKVLGDSENDVVIQEMQIKTDFSELPRLEREAASNGNSSSSSPASAAFPLYFARFAFSPHWKNILFVTFPRELLVFDLQYETPLSTTPLPRGCAKFLDILPDPNKELLYCGHVDGRLSIWRRKEGEQVHVMCTMEEFMPSIGMSIPSPSALAVLLSHSDSTMQTITKIHPDGTSSIDFDNPFDFYDESLLVSKTTFISLSDDGKIWKWVLSAEGVEDALKNASDLDMGIGATEAALPGAIQENDSSSLDDELVVAPTNRSRGHTSGSSMEKSDLSFKISLTGQLQLLSSTVSTLAVPSPSLTATLARGGNIPAAAVPLVALGTQSGTIDVVDVSTNAVAASTSVHTGVVRGLRWLGNSRLVSFSYSQVNDKSRGYINRLVVTCLRSGLNKPFRDLQKPERTPIRALRTSSSGRYLLILFRDAPVEVWAMTKHPVMLRSLALPFTVVEWTLPAVPRPGQGGPSKQSLSASEGVTASGDSSSVGSDGSQEETVESFAFALVNGALGVFEVQGRRIRDFRPKWPSTSFVPSDGLVTAMAYRLPHVVMGDRSGNIRWWDVTTGQSSAFNSHRDGIRRIKFSPVVAGDRSRGRVAVLFNDNTFSVFDLDSPDPLAQSLLQPQIPGTLVLELDWLPLRTDKNDPLVLCIAGADSTFRLVEVTVNEKKAGFVPQSKSVKERFRPMPMYSPILLPVPHALALRMILQLGVKPSWFNTSSTTLEKRPHLIRGMASSSKDLRSYMIQLPPLGDPVVPEMLLKILEPYRKEGCLLDDERAKLYADVVKKGYAARFAFAASVFGETSEALFWLQLPQAIRHLMNKLTRRSPQKISSPTLDSGADEVAMPSKIPSTGLSSPEARKIDSMCDGSLRLMAFEREELRTRANERLPWHEKLDGEDCIQKQVHELISVGNLEAAVSLLLSSAPDSPYFYPNALRAVALASAVSKSLLDLALKVVAANMVRTDNSLTGTHLLCAVGRHQEACSQLQDSGRWTDAATLAATHLEGSDYARVLQRWADHVLHAEHNVWRYFIIMLTFNTV", "length": 1228, "header": "tr|A0A1I9LQ10-1|F4JCM7_ARATH Computationally mapped isoform of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JCM7-1" }, "locus": { "chromosome": "3", "start_pos": 14085248, "end_pos": 14093092, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G33530.5", "url": "https://www.ensemblgenomes.org/id/AT3G33530.5" }, { "database": "Ensembl Peptide", "id": "AT3G33530.5", "url": "https://www.ensemblgenomes.org/id/AT3G33530.5" } ] } }, { "isoform_ac": "F4JCM5-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM7/entry#F4JCM5-1", "sequence": { "sequence": "MAASKPSPTDTWDSTLPGPPSRNNFGSADLSPSGLFAFASGSSVSVVDSRSLQLVSTIPLPPPPGALSPFVTSVRWIPLPLPRDLLSTEPSASHLLLAVADRHGRVALVDFHLRSVVVWLNPSSDPKLGIQDLCWVQARHDSHVLAAISGSSFLSLYTTSGGLFWKYDAGTEILSCLRRDPYDSRHFCVLGLKGFLLSVKVLGDSENDVVIQEMQIKTDFSELPRLEREAASNGNSSSSSPASAAFPLYFARFAFSPHWKNILFVTFPRELLVFDLQYETPLSTTPLPRGCAKFLDILPDPNKELLYCGHVDGRLSIWRRKEGEQVHVMCTMEEFMPSIGMSIPSPSALAVLLSHSDSTMQTITKIHPDGTSSIDFDNPFDFYDESLLVSKTTFISLSDDGKIWKWVLSAEGVEDALKNASDLDMGIGATEAALPGAIQENDSSSLDDELVVAPTNRSRGHTSGSSMEKSDLSFKVGGWKVFGAYTCLLRSMQISLTGQLQLLSSTVSTLAVPSPSLTATLARGGNIPAAAVPLVALGTQSGTIDVVDVSTNAVAASTSVHTGVVRGLRWLGNSRLVSFSYSQVNDKSRGYINRLVVTCLRSGLNKPFRDLQKPERTPIRALRTSSSGRYLLILFRDAPVEVWAMTKHPVMLRSLALPFTVVEWTLPAVPRPGQGGPSKQSLSASEGVTASGDSWAVIDIFSASVGSDGSQEETVESFAFALVNGALGVFEVQGRRIRDFRPKWPSTSFVPSDGLVTAMAYRLPHVVMGDRSGNIRWWDVTTGQSSAFNSHRDGIRRIKFSPVVAGDRSRGRVAVLFNDNTFSVFDLDSPDPLAQSLLQPQIPGTLVLELDWLPLRTDKNDPLVLCIAGADSTFRLVEVTVNEKKAGFVPQSKSVKERFRPMPMYSPILLPVPHALALRMILQLGVKPSWFNTSSTTLEKRPHLIRGMASSSKDLRSYMIQLPPLGDPVVPEMLLKILEPYRKEGCLLDDERAKLYADVVKKGYAARFAFAASVFGETSEALFWLQLPQAIRHLMNKLTRRSPQKISSPTLDSGADEVAMPSKIPSTGLSSPEARKIDSMCDGSLRLMAFEREELRTRANERLPWHEKLDGEDCIQKQVHELISVGNLEAAVSLLLSSAPDSPYFYPNALRAVALASAVSKSLLDLALKVVAANMVRTDNSLTGTHLLCAVGRHQEACSQLQDSGRWTDAATLAATHLEGSDYARVLQRWADHVLHAEHNVWRALILYVAAGSLQEALAALREVQQPDTVAMFVLACQEIHSEIITELSTQDEESESASGDGTVPLPDLPGLESGKEEVTAVCEYFQQYQRKLVHLCMDSQPYTD", "length": 1345, "header": "tr|F4JCM5-1|F4JCM5_ARATH Computationally mapped isoform of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JCM7-1" }, "locus": { "chromosome": "3", "start_pos": 14085354, "end_pos": 14093670, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G33530.1", "url": "https://www.ensemblgenomes.org/id/AT3G33530.1" }, { "database": "Ensembl Peptide", "id": "AT3G33530.1", "url": "https://www.ensemblgenomes.org/id/AT3G33530.1" } ] } }, { "isoform_ac": "F4JCM6-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM7/entry#F4JCM6-1", "sequence": { "sequence": "MAASKPSPTDTWDSTLPGPPSRNNFGSADLSPSGLFAFASGSSVSVVDSRSLQLVSTIPLPPPPGALSPFVTSVRWIPLPLPRDLLSTEPSASHLLLAVADRHGRVALVDFHLRSVVVWLNPSSDPKLGIQDLCWVQARHDSHVLAAISGSSFLSLYTTSGGLFWKYDAGTEILSCLRRDPYDSRHFCVLGLKGFLLSVKVLGDSENDVVIQEMQIKTDFSELPRLEREAASNGNSSSSSPASAAFPLYFARFAFSPHWKNILFVTFPRELLVFDLQYETPLSTTPLPRGCAKFLDILPDPNKELLYCGHVDGRLSIWRRKEGEQVHVMCTMEEFMPSIGMSIPSPSALAVLLSHSDSTMQTITKIHPDGTSSIDFDNPFDFYDESLLVSKTTFISLSDDGKIWKWVLSAEGVEDALKNASDLDMGIGATEAALPGAIQENDSSSLDDELVVAPTNRSRGHTSGSSMEKSDLSFKKFGVTRAYTCLLRSMQISLTGQLQLLSSTVSTLAVPSPSLTATLARGGNIPAAAVPLVALGTQSGTIDVVDVSTNAVAASTSVHTGVVRGLRWLGNSRLVSFSYSQVNDKSRGYINRLVVTCLRSGLNKPFRDLQKPERTPIRALRTSSSGRSSRILLHYFKDEELLYLLILFRDAPVEVWAMTKHPVMLRSLALPFTVVEWTLPAVPRPGQGGPSKQSLSASEGVTASGDSWAVIDIFSASVGSDGSQEETVESFAFALVNGALGVFEVQGRRIRDFRPKWPSTSFVPSDGLVTAMAYRLPHVVMGDRSGNIRWWDVTTGQSSAFNSHRDGIRRIKFSPVVAGDRSRGRVAVLFNDNTFSVFDLDSPDPLAQSLLQPQIPGTLVLELDWLPLRTDKNDPLVLCIAGADSTFRLVEVTVNEKKAGFVPQSKSVKERFRPMPMYSPILLPVPHALALRMILQLGVKPSWFNTSSTTLEKRPHLIRGMASSSKDLRSYMIQLPPLGDPVVPEMLLKILEPYRKEGCLLDDERAKLYADVVKKGYAARFAFAASVFGETSEALFWLQLPQAIRHLMNKLTRRSPQKISSPTLDSGADEVAMPSKIPSTGLSSPEARKIDSMCDGSLRLMAFEREELRTRANERLPWHEKLDGEDCIQKQVHELISVGNLEAAVSLLLSSAPDSPYFYPNALRAVALASAVSKSLLDLALKVVAANMVRTDNSLTGTHLLCAVGRHQEACSQLQDSGRWTDAATLAATHLEGSDYARVLQRWADHVLHAEHNVWRALILYVAAGSLQEALAALREVQQPDTVAMFVLACQEIHSEIITELSTQDEESESASGDGTVPLPDLPGLESGKEEVTAVCEYFQQYQRKLVHLCMDSQPYTD", "length": 1358, "header": "tr|F4JCM6-1|F4JCM6_ARATH Computationally mapped isoform of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JCM7-1" }, "locus": { "chromosome": "3", "start_pos": 14085354, "end_pos": 14093526, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G33530.2", "url": "https://www.ensemblgenomes.org/id/AT3G33530.2" }, { "database": "Ensembl Peptide", "id": "AT3G33530.2", "url": "https://www.ensemblgenomes.org/id/AT3G33530.2" } ] } }, { "isoform_ac": "F4JCM7-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM7/entry#F4JCM7-1", "sequence": { "sequence": 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"https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1102" }, { "start_pos": 806, "end_pos": 806, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser806" }, { "start_pos": 814, "end_pos": 814, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JCM6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM6" } ], "site_lbl": "Ser814" }, { "start_pos": 982, "end_pos": 982, 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Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQ09", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ09" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQ09", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ09" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": 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: for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQ09", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQ09" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4JCM7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT3G33530", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G33530", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ACB1-1", "protein_name": "WD repeat-containing protein 11", "gene_name": "Wdr11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPYTVNFKVSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSNTAQTLQVLEKHKADIVKVKWARENYHHNIGSPYCLRLASADVNGKIIVWDVAAGVAQCEIQEHVKPIQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILSFSFDPFDPSHLTLLTSEGIVFISDFSPSKAPSGPGKKVYISSPHCSPAHNKLAAATGAKRALNKVKVLVTQEKPSAEFVALNDCLQLAYLPSKRSHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQVIPCSQRDGLFCLHENGCITLRVRRSYSSICTTSSDEPDLDPVQELTYDLRSQCDAIRVTKTVRPFSMVCCPVNENAAALIVSDGRVMIWELKSAVCSRNARNSSSAVSPLYSPVSFCGIPGGVLQNKLPDLSLDNMIGQSAIAGEEHPKGSILQEVHLKFLLTGLLSGLPSPQFAIRMCPPLTTKNIKMYQPLLAVGTSNGSVLVYHLTSGLLHKELSVHSCEVKGIEWTSLTSFLSFAASTPNNMGLVRNELQLVDLPTGRSTAFRGDRGNDESPIEMIKVSHLKQYLAVVFKDKPLELWDIRTCTLLREMSKSFPAITALEWSPSHNLKSLRKKQLATREAMARQTVVSDAELGAVESSVISLLQEAESKSELSQNISAREHFVFTDNDGQVYHLTVEGNSVKDSARIPPDGSMGSITCIAWKGDTLVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAPGKGNQKLIAMYTDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVILASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSLDISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWTVAAHYLHSLSQAKSGDTVVTKDGAPKDKLNNPLDICYDVLCENAYFQKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLKRWADHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFGVSEDTDKLITAIYTDYARSLKSLGFKQGAVHFASKAGAAGRDLLNELGSPKEEATEG", "length": 1224 }, "evidence": [ { "id": "F4JCM7", "url": "https://omabrowser.org/oma/group/F4JCM7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QEB7-1", "protein_name": "WD repeat-containing protein 11", "gene_name": "wdr11", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASTMIPYTVNIKLAARTLTGTLNLQNKTAVDWGWQGLIAQGCHSSILIIDPNTAQTIQVLERHKANVVKVKWSRENYHHSLSSPYSLRLASADAAGKIIVWDVVSGMAHCEIQEHSKPIQDMDWLWAQDASRDLLLAVHPPNYIVLWNGDTGTKLWKKSYAENILSFSFDPFEPSNLALLTSEGIVFITDFSHSKPPGSGGKKVYIASPHSSPAHSKPAAAQPTGAKKALNKVKVLITNEKPTAEAVTLNDCLQLSYLPSKRNHMLLLYPREILILDLELSQTVGVVAIERSGVPFIQVIPCAQRDALYCLHENGCITLRVCRSTTPSPNETVTDPEQNSQELVYDLRSQCDAIRVTKTVRPYRVVICPVNENKAVLVVSDGRVMLWELKAHASKSSSNLSSGLPPLYSAVNFCGTPLRQNQKCIPDLSLNSMIGHSLIPGVDSPRPLADQKEVHLKFLLTGLLSGLPLPPFSLRMCPPLTTKNINHYQPLLAVGTSNGSVLVYNLTSGLLHKELSVHSCEVRGIEWISLTSFLSFATSVPNNLGLVRNELQHVDLRTGRCFAFRGERGNDEPAIEMIKVSHLKQYLVVVFRDKPLELWDVRTGTLLREMAKNFPTVTALEWSPSHNLKSLKKKQLAAREAMARQTTLADAEQSSVESSVISLLQDAESKSESSQGISAREHFVFTDTDGQVYHITVEGNTVKDGARIPPDGSMGSIACIAWKGDTLVLGDVDGNLNFWDLKARLSRGVPTHRGWVKKIRFAPGKGNQKLLVMYTDGAEVWDTKEVQMVSSIRVGRNVNYRILDIDWCTSDKVVLASDDGCVRVLEMAMKSASYRMDEQDLTDPVWCPYLLLPRAALTLKAFLLLQPWMDTFTMDITQVDYKEKDEIKGLIQEQLNSLSNDIKSVLQDPNLSLLQRCLLVSRLFGDESDLQFWTVASHYIQAFAQSAQSNESVPEGQAAASHLDICHDILCESSFFQGFQLERVRLQEVKRSSYEHTKKCADQLLLLGQTDRAVQLLLETSADNSSYYCDSLKACLVTTITSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWTRAAWLAKVRLNAAEGSDVLKRWAEHLCSPQVNQKSKAMLVLLSLGCFQKVGEMLHSMRYFDRAALFIEACLKYGVMETNDDINKLVGAAFVDYAKLLRSIGLKQGAVHWASRAGEAGKQLLEDLSQTEGTGTESSPADDTDNSLVNIE", "length": 1239 }, "evidence": [ { "id": "F4JCM7", "url": "https://omabrowser.org/oma/group/F4JCM7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8K1X1-1", "protein_name": "WD repeat-containing protein 11", "gene_name": "Wdr11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPYTVNFKVSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSNTAQTLQVLEKHKADIVKVRWARENYHHNIGSPYCLRLASADVTGKIIVWDVAAGVAQCEIQEHVKPIQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILSFSFDPFDPSHLTLLTSEGIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLAAATGAKKALNKVKILITQEKPSADFVALNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQVIPCSQRDGLFCLHENGCITLRVRRSYNSICTTSNDEPDLDPVQELTYDLRSQCDAIRVTKTVRPFSMVCCPVNENAAALIVSDGRVMIWELKSAVCSRNARNSSGVSPLYSPVSFCGIPGGVLQNKLPDLSLDNMIGQSAIAGEEHPKGSILQEVHLKFLLTGLLSGLPSPQFAIRMCPPLTTKNIKTYQPLLAVGTSNGSVLVYHLTSGLLHKELSVHSCEVKGIEWTSLTSFLSFAASTPNNMGLVRNELQLVDLPTGRSTAFRGDRGNDESPIEMIKVSHLKQYLAVVFKDKPLELWDIRTCTLLREMSKSFPAITALEWSPSHNLKSLRKKQLATREAMARQTVVSDAELGAVESSVISLLQEAESKAELSQNISAREHFVFTDNDGQVYHLTVEGNSVKDSARIPPDGSMGSITCIAWKGDTLVLGDMDGNLNFWDLKARVSRGIPTHRSWVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVILASDDGCIRVLEMSMKSTCFRMDEQELVEPVWCPYLLVPRAALALKAFLLHQPWNGRYSLDISHIDYPENEEIKTLLQEQLHALSNDIKKLLLDPDFSLLQRCLLVSRLYGDESELHFWTVAAHYLHSLSQAKSGDTVVTKEGAPKDRLSNPLDICYDVLCENTYFQKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLKRWVDHLCSPQVNQKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEACLKYGAFEVSEDTEKLIAAIYADYARSLKSLGFRQGAVRFASKAGAAGRDLLNELGSTKEELTES", "length": 1223 }, "evidence": [ { "id": "F4JCM7", "url": "https://omabrowser.org/oma/group/F4JCM7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BZH6-1", "protein_name": "WD repeat-containing protein 11", "gene_name": "WDR11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLPYTVNFKVSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQTLQVLEKHKADVVKVKWARENYHHNIGSPYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAKPIQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILSFSFDPFDPSHLTLLTSEGIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLATATGAKKALNKVKILITQEKPSAEFITLNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQVIPCFQRDGLFCLHENGCITLRVRRSYNNIFTTSNEEPDPDPVQELTYDLRSQCDAIRVTKTVRPFSMVCCPVNENAAALVVSDGRVMIWELKSAVCNRNSRNSSSGVSPLYSPVSFCGIPVGVLQNKLPDLSLDNMIGQSAIAGEEHPRGSILREVHLKFLLTGLLSGLPAPQFAIRMCPPLTTKNIKMYQPLLAVGTSNGSVLVYHLTSGLLHKELSIHSCEVKGIEWTSLTSFLSFATSTPNNMGLVRNELQLVDLPTGRSIAFRGERGNDESAIEMIKVSHLKQYLAVVFRDKPLELWDVRTCTLLREMSKNFPTITALEWSPSHNLKSLRKKQLATREAMARQTVVSDTELSIVESSVISLLQEAESKSELSQNISAREHFVFTDIDGQVYHLTVEGNSVKDSARIPPDGSMGSITCIAWKGDTLVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVILASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSLDISHVDYPENEEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWTVAAHYLHSLSQEKSASTTAPKEAAPRDKLSNPLDICYDVLCENAYFQKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQVNQKSKALLVLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVTEDTEKLITAIYADYARSLKNLGFKQGAVLFASKAGAAGKDLLNELESPKEEPIEE", "length": 1224 }, "evidence": [ { "id": "F4JCM7", "url": "https://omabrowser.org/oma/group/F4JCM7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JCM7", "url": "https://www.uniprot.org/uniprotkb/F4JCM7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JCM7", "url": "https://www.uniprot.org/uniprotkb/F4JCM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 456, "end_pos": 458, "annotation": "n_glycosylation_sequon" }, { "start_pos": 963, "end_pos": 965, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JCM7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1376, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JCM7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JCM7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JCM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JCM7" }, { "id": "PF23753", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23753" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WDR11 TPR", "eco_id": "ECO_0000259", "start_pos": 961, "end_pos": 1368, "start_aa": "Trp", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4JCM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JCM7" }, { "id": "PF23751", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23751" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WDR11 first beta-propeller", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 475, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4JCM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JCM7" }, { "id": "PF23752", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23752" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WDR11 second beta-propeller", "eco_id": "ECO_0000259", "start_pos": 500, "end_pos": 834, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 806, 814, 982, 1078, 1079, 1081, 1084, 1098, 1101, 1102 ], "sequon_annotation_sites": [ { "start_pos": 235, "end_pos": 237 }, { "start_pos": 419, "end_pos": 421 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 456, "end_pos": 458 }, { "start_pos": 963, "end_pos": 965 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 10 }, { "field": "total_sites", "count": 10 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JDQ6-1", "uniprot_ac": "F4JDQ6", "uniprot_id": "F4JDQ6_ARATH", "mass": { "chemical_mass": 71812.0, "monoisotopic_mass": 71812.0 }, "refseq": { "ac": "NP_189317", "name": "Esterase/lipase/thioesterase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189317" }, "gene_names": [ { "name": "ELT3", "type": "recommended", "evidence": [ { "id": "F4JDQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6" } ] } ], "protein_names": [ { "name": "Esterase/lipase/thioesterase family protein", "type": "synonym", "evidence": [ { "id": "NP_189317", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189317" }, { "id": "F4JDQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JDQ6", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ELT3", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6", "locus": {} } ], "crossref": [ { "id": "F4JDQ6", "url": "https://alphafold.ebi.ac.uk/entry/F4JDQ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G26820", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G26820", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd07987", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07987", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "822297", "url": "https://www.ncbi.nlm.nih.gov/gene/822297", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G26820", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26820", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TNENIMV", "url": "https://omabrowser.org/oma/group/TNENIMV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22753", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22753", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22753:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22753:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03982", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03982", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12146", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12146", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189317", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189317", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G26820", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G26820", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LQB7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LQB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQB7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JDQ6", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JDQ6-1", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVTLLRSIFGLCAVSSSSRVTDSYCSTKSYLRRRRTSASKQRLTEIKSVTSTPPPPSREARDFVGDGGGPPRWFSPLECRAQAPNSPLLLFLPGIDGTGLGLIRHHKKLGEIFDIWCLHIPVSDRTPFKDLVKLIERTVKSENYRFPNRPIYLVGESIGACLALDVAARNPNVDLALILVNPATHVNNFMSKPLLGMLNVLPDGIPTLWEDVFGFKQGAPLTGILEAMSNEFSVQRMGGVGGGMLRDLFAVSANLPTLSRMFSKDTLLWKLEMLKSAIASVNSHIYSVKAETLILPSGRDQWLLNEEDIVRYSRTLPNCIVRKLDDNGQFPLLEDSLDLATIIKLTCFYRRGKSHDYVSDYIKPTPFELQQLLDEHRLLMDAISPVMLSTLEDGLLLKERNIHMRGLTHPMVFMYIQDSLVDPKMFDKYKLMGGVPVSNMNFYKLLREKAHVLLYPGGVREALHRKGEEYKLFWPEQSEFVRVASKFGAKIVPFGVVGEDDIFNIVLDSNDQRNIPILKDLMEKATKDAGNLRWKETKANWETKIAIIPGLVPKIPGRFYYYFGKPIDLAGKEKELKDKEKAQEVYLQAKSEVEQCIAYLKMKRECDPYRQLLPRMMYQASHGWSCEIPTFDL", "length": 634, "header": "tr|F4JDQ6-1|F4JDQ6_ARATH Isoform 1 of Esterase/lipase/thioesterase family protein OS=Arabidopsis thaliana OX=3702 GN=ELT3 PE=3 SV=1 CANONICAL=F4JDQ6-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LQB7-1", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6/entry#A0A1I9LQB7-1", "sequence": { "sequence": "MGVTLLRSIFGLCAVSSSSRVTDSYCSTKSYLRRRRTSASKQRLTEIKSVTSTPPPPSREARDFVGDGGGPPRWFSPLECRAQAPNSPLLLFLPGIDGTGLGLIRHHKKLGEIFDIWCLHIPVSDRTPFKDLVKLIERTVKSENYRFPNRPIYLVGESIGACLALDVAARNPNVDLALILVNPATHVNNFMSKPLLGMLNVLPDGIPTLWEDVFGFKQGAPLTGILEAMSNEFSVQRMGGVGGGMLRDLFAVSANLPTLSRMFSKDTLLWKLEMLKSAIASVNSHIYSVKAETLILPSGRDQWLLNEEDIVRYSRTLPNCIVRKLDDNGQFPLLEDSLDLATIIKLTCFYRRGKSHDYVSDYIKPTPFELQQLLDEHRLLMDAISPVMLSTLEDGLLLKERNIHMRGLTHPMVFMYIQDSLVDPKMFDKYKLMGGVPVSNMNFYKLLREKAHVLLYPGGVREALHRKGEEYKLFWPEQSEFVRVASKFGAKIVPFGVVGEDDIFNIVLDSNDQRNIPILKDLMEKATKDAGNLREGDESELGNQDCYNPRTCT", "length": 553, "header": "tr|A0A1I9LQB7-1|F4JDQ6_ARATH Computationally mapped isoform of Esterase/lipase/thioesterase family protein OS=Arabidopsis thaliana OX=3702 GN=ELT3 PE=3 SV=1 CANONICAL=F4JDQ6-1" }, "locus": { "chromosome": "3", "start_pos": 9881128, "end_pos": 9885202, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26820.2", "url": "https://www.ensemblgenomes.org/id/AT3G26820.2" }, { "database": "Ensembl Peptide", "id": "AT3G26820.2", "url": "https://www.ensemblgenomes.org/id/AT3G26820.2" } ] } }, { "isoform_ac": "F4JDQ6-1", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6/entry#F4JDQ6-1", "sequence": { "sequence": "MGVTLLRSIFGLCAVSSSSRVTDSYCSTKSYLRRRRTSASKQRLTEIKSVTSTPPPPSREARDFVGDGGGPPRWFSPLECRAQAPNSPLLLFLPGIDGTGLGLIRHHKKLGEIFDIWCLHIPVSDRTPFKDLVKLIERTVKSENYRFPNRPIYLVGESIGACLALDVAARNPNVDLALILVNPATHVNNFMSKPLLGMLNVLPDGIPTLWEDVFGFKQGAPLTGILEAMSNEFSVQRMGGVGGGMLRDLFAVSANLPTLSRMFSKDTLLWKLEMLKSAIASVNSHIYSVKAETLILPSGRDQWLLNEEDIVRYSRTLPNCIVRKLDDNGQFPLLEDSLDLATIIKLTCFYRRGKSHDYVSDYIKPTPFELQQLLDEHRLLMDAISPVMLSTLEDGLLLKERNIHMRGLTHPMVFMYIQDSLVDPKMFDKYKLMGGVPVSNMNFYKLLREKAHVLLYPGGVREALHRKGEEYKLFWPEQSEFVRVASKFGAKIVPFGVVGEDDIFNIVLDSNDQRNIPILKDLMEKATKDAGNLRWKETKANWETKIAIIPGLVPKIPGRFYYYFGKPIDLAGKEKELKDKEKAQEVYLQAKSEVEQCIAYLKMKRECDPYRQLLPRMMYQASHGWSCEIPTFDL", "length": 634, "header": "tr|F4JDQ6-1|F4JDQ6_ARATH Isoform 1 of Esterase/lipase/thioesterase family protein OS=Arabidopsis thaliana OX=3702 GN=ELT3 PE=3 SV=1 CANONICAL=F4JDQ6-1" }, "locus": { "chromosome": "3", "start_pos": 9881128, "end_pos": 9885067, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26820.1", "url": "https://www.ensemblgenomes.org/id/AT3G26820.1" }, { "database": "Ensembl Peptide", "id": "AT3G26820.1", "url": "https://www.ensemblgenomes.org/id/AT3G26820.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 49, "end_pos": 49, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JDQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDQ6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser49" }, { "start_pos": 53, "end_pos": 53, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JDQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDQ6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr53" }, { "start_pos": 58, "end_pos": 58, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JDQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDQ6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser58" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQB7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQB7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4JDQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDQ6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQB7", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQB7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G26820", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26820", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "triglyceride biosynthetic process", "id": "GO:0019432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019432", "evidence": [ { "database": "UniProtKB", "id": "F4JDQ6", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "diacylglycerol O-acyltransferase activity", "id": "GO:0004144", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004144", "evidence": [ { "database": "UniProtKB", "id": "F4JDQ6", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4JDQ6", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JDQ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 634, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JDQ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JDQ6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JDQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDQ6" }, { "id": "PF12146", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12146" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serine aminopeptidase S33", "eco_id": "ECO_0000259", "start_pos": 130, "end_pos": 209, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 49, 53, 58 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J9U2-1", "uniprot_ac": "F4J9U2", "uniprot_id": "F4J9U2_ARATH", "mass": { "chemical_mass": 130821.0, "monoisotopic_mass": 130821.0 }, "refseq": { "ac": "NP_187865", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187865" }, "gene_names": [], "protein_names": [ { "name": "ARM repeat superfamily protein", "type": "recommended", "evidence": [ { "id": "F4J9U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9U2/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_187865", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187865" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J9U2", "url": "https://www.uniprot.org/uniprotkb/F4J9U2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J9U2", "locus": {} } ], "crossref": [ { "id": "F4J9U2", "url": "https://alphafold.ebi.ac.uk/entry/F4J9U2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G12590", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G12590", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820439", "url": "https://www.ncbi.nlm.nih.gov/gene/820439", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4J9U2", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4J9U2*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "ath:AT3G12590", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12590", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MAVQVQE", "url": "https://omabrowser.org/oma/group/MAVQVQE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1I9LQC1", "url": "https://www.orthodb.org/?gene=A0A1I9LQC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4J9U2", "url": "https://www.orthodb.org/?gene=F4J9U2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34958", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34958", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34958:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34958:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_187865", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187865", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G12590", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12590", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LQC1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LQC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J9U2", "url": "https://www.uniprot.org/uniprotkb/F4J9U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J9U2-1", "url": "https://www.uniprot.org/uniprotkb/F4J9U2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSTYSPGQSPGSSRLLQLGAAGSASRLRSSSSKKPPEPLRRAVADCLSSSPPPVNSHHGAIPSMAPSEALRNLRDYLSASATTDLAYNMLLEHTIAERDRSPAVVTRCVALLKRYILRYKPGEETLLQVDKFCVNLIAECDASLKQKSLPVLSAPAGASPLPVSSFASAALVKSLHYVRSLVALHIPRRSFQPAAFAGATLASRQLLPSLSSLLSKSFNSQLSPANAAESPQKKDAANLSVSNLSNIQEINAMEDTEYISSDLLNWRWVGELQLSSASSESERPVNLQDMNNCNLLEVGAAGLLVGDMEAKMKGQHWKYFGTAEMPYLEQLLQPASVTMITNSASARSHLRAITASKRTRAGPQQIWDDSTVNTFRPRARPLFQYRHYSEQQPLRLNPAEVGEVIAAVCSEASSTPSNQMTVSPQLTSKTGKPSMDVAVSVLIKLVIDMYVLDARIAAPLTLSMLEEMLCSTKAPCRIRVFDLILNLGVHAQLLEPMISDNATTIEEDYAQETYIDNENRLLLQGTRTKDLPKMSSTSSAIENFESWILKILFEILLLLVQVEEKEECVWASALSCLLYFICDRGKIRRNQLNGLDIRVIKALLGTSKRNSWSEVVHSKLICIMTNMFYQSPEPEGSNKAISSASNFLIDQVDLIGGVEYIFFEYSLATTREERRNLYSVLFDYVLHQINEACSSAGLSEYTDDEIQPLAVRLALADAPEAFYISVKLGVEGIGEILRRSIAAALSGFSNSERLNQLLANITEKFDTIIGSFTHLDKEFLHLKQITKSSKFMESILDLRNDISMSVNLAWATLHSLLHSERTTYRQNGYIWLGDLLIAEISEESGGSIWLSIKDLQQKIAHCGTSDSLVTSDVPISIHLLCGLLKSRNSVIRWGFLFILERLLMRSKFLLDENETQRSTGGVATQDHKDKRLEKANAVIDIMSSALSLMAQINETDRINILKMCDILFSQLCLKVLSTDEDAVPNSADRNSKFDTSHRNSYKESVDEGDTKPRYNNVSVSTCETASMAAMLLRGQAIVPMQLVARVPAALFYWPLIQLAGAATDNIALGVAVGSKGRGNIPGATSDIRATLLLLLIGKCTADTVAFQEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEEPEKYQNMLQKLVFKAQQSNNEKLLENPYLQMCGILQLSNEL", "length": 1184, "header": "tr|F4J9U2-1|F4J9U2_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J9U2-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LQC1-1", "url": "https://www.uniprot.org/uniprotkb/F4J9U2/entry#A0A1I9LQC1-1", "sequence": { "sequence": "MLLEHTIAERDRSPAVVTRCVALLKRYILRYKPGEETLLQVDKFCVNLIAECDASLKQKSLPVLSAPAGASPLPVSSFASAALVKSLHYVRSLVALHIPRRSFQPAAFAGATLASRQLLPSLSSLLSKSFNSQLSPANAAESPQKKDAANLSVSNLSNIQEINAMEDTEYISSDLLNWRWVGELQLSSASSESERPVNLQDMNNCNLLEVGAAGLLVGDMEAKMKGQHWKYFGTAEMPYLEQLLQPASVTMITNSASARSHLRAITASKRTRAGPQQIWDDSTVNTFRPRARPLFQYRHYSEQQPLRLNPAEVGEVIAAVCSEASSTPSNQMTVSPQLTSKTGKPSMDVAVSVLIKLVIDMYVLDARIAAPLTLSMLEEMLCSTKAPCRIRVFDLILNLGVHAQLLEPMISDNATTIEEDYAQETYIDNENRLLLQGTRTKDLPKMSSTSSAIENFESWILKILFEILLLLVQVEEKEECVWASALSCLLYFICDRGKIRRNQLNGLDIRVIKALLGTSKRNSWSEVVHSKLICIMTNMFYQSPEPEGSNKAISSASNFLIDQVDLIGGVEYIFFEYSLATTREERRNLYSVLFDYVLHQINEACSSAGLSEYTDDEIQPLAVRLALADAPEAFYISVKLGVEGIGEILRRSIAAALSGFSNSERLNQLLANITEKFDTIIGSFTHLDKEFLHLKQITKSSKFMESILDLRNDISMSVNLAWATLHSLLHSERTTYRQNGYIWLGDLLIAEISEESGGSIWLSIKDLQQKIAHCGTSDSLVTSDVPISIHLLCGLLKSRNSVIRWGFLFILERLLMRSKFLLDENETQRSTGGVATQDHKDKRLEKANAVIDIMSSALSLMAQINETDRINILKMCDILFSQLCLKVLSTDEDAVPNSADRNSKFDTSHRNSYKESVDEGDTKPRYNNVSVSTCETASMAAMLLRGQAIVPMQLVARVPAALFYWPLIQLAGAATDNIALGVAVGSKGRGNIPGATSDIRATLLLLLIGKCTADTVAFQEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEEPEKYQNMLQKLVFKAQQSNNEKLLENPYLQMCGILQLSNEL", "length": 1095, "header": "tr|A0A1I9LQC1-1|F4J9U2_ARATH Computationally mapped isoform of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J9U2-1" }, "locus": { "chromosome": "3", "start_pos": 3995710, "end_pos": 4003871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12590.2", "url": "https://www.ensemblgenomes.org/id/AT3G12590.2" }, { "database": "Ensembl Peptide", "id": "AT3G12590.2", "url": "https://www.ensemblgenomes.org/id/AT3G12590.2" } ] } }, { "isoform_ac": "F4J9U2-1", "url": "https://www.uniprot.org/uniprotkb/F4J9U2/entry#F4J9U2-1", "sequence": { "sequence": "MSSTYSPGQSPGSSRLLQLGAAGSASRLRSSSSKKPPEPLRRAVADCLSSSPPPVNSHHGAIPSMAPSEALRNLRDYLSASATTDLAYNMLLEHTIAERDRSPAVVTRCVALLKRYILRYKPGEETLLQVDKFCVNLIAECDASLKQKSLPVLSAPAGASPLPVSSFASAALVKSLHYVRSLVALHIPRRSFQPAAFAGATLASRQLLPSLSSLLSKSFNSQLSPANAAESPQKKDAANLSVSNLSNIQEINAMEDTEYISSDLLNWRWVGELQLSSASSESERPVNLQDMNNCNLLEVGAAGLLVGDMEAKMKGQHWKYFGTAEMPYLEQLLQPASVTMITNSASARSHLRAITASKRTRAGPQQIWDDSTVNTFRPRARPLFQYRHYSEQQPLRLNPAEVGEVIAAVCSEASSTPSNQMTVSPQLTSKTGKPSMDVAVSVLIKLVIDMYVLDARIAAPLTLSMLEEMLCSTKAPCRIRVFDLILNLGVHAQLLEPMISDNATTIEEDYAQETYIDNENRLLLQGTRTKDLPKMSSTSSAIENFESWILKILFEILLLLVQVEEKEECVWASALSCLLYFICDRGKIRRNQLNGLDIRVIKALLGTSKRNSWSEVVHSKLICIMTNMFYQSPEPEGSNKAISSASNFLIDQVDLIGGVEYIFFEYSLATTREERRNLYSVLFDYVLHQINEACSSAGLSEYTDDEIQPLAVRLALADAPEAFYISVKLGVEGIGEILRRSIAAALSGFSNSERLNQLLANITEKFDTIIGSFTHLDKEFLHLKQITKSSKFMESILDLRNDISMSVNLAWATLHSLLHSERTTYRQNGYIWLGDLLIAEISEESGGSIWLSIKDLQQKIAHCGTSDSLVTSDVPISIHLLCGLLKSRNSVIRWGFLFILERLLMRSKFLLDENETQRSTGGVATQDHKDKRLEKANAVIDIMSSALSLMAQINETDRINILKMCDILFSQLCLKVLSTDEDAVPNSADRNSKFDTSHRNSYKESVDEGDTKPRYNNVSVSTCETASMAAMLLRGQAIVPMQLVARVPAALFYWPLIQLAGAATDNIALGVAVGSKGRGNIPGATSDIRATLLLLLIGKCTADTVAFQEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEEPEKYQNMLQKLVFKAQQSNNEKLLENPYLQMCGILQLSNEL", "length": 1184, "header": "tr|F4J9U2-1|F4J9U2_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J9U2-1" }, "locus": { "chromosome": "3", "start_pos": 3995665, "end_pos": 4003839, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12590.1", "url": "https://www.ensemblgenomes.org/id/AT3G12590.1" }, { "database": "Ensembl Peptide", "id": "AT3G12590.1", "url": "https://www.ensemblgenomes.org/id/AT3G12590.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQC1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQC1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQC1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQC1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G12590", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12590", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4J9U2", "url": "https://www.uniprot.org/uniprotkb/F4J9U2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1017, "end_pos": 1019, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 502, "end_pos": 504, "annotation": "n_glycosylation_sequon" }, { "start_pos": 761, "end_pos": 763, "annotation": "n_glycosylation_sequon" }, { "start_pos": 914, "end_pos": 916, "annotation": "n_glycosylation_sequon" }, { "start_pos": 954, "end_pos": 956, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J9U2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1184, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J9U2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J9U2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1017, "end_pos": 1019 }, { "start_pos": 239, "end_pos": 241 }, { "start_pos": 244, "end_pos": 246 }, { "start_pos": 502, "end_pos": 504 }, { "start_pos": 761, "end_pos": 763 }, { "start_pos": 914, "end_pos": 916 }, { "start_pos": 954, "end_pos": 956 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J4G9-1", "uniprot_ac": "F4J4G9", "uniprot_id": "F4J4G9_ARATH", "mass": { "chemical_mass": 94722.0, "monoisotopic_mass": 94722.0 }, "refseq": { "ac": "NP_001319722", "name": "stress response NST1-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319722" }, "gene_names": [], "protein_names": [ { "name": "Stress response NST1-like protein", "type": "synonym", "evidence": [ { "id": "F4J4G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J4G9/entry#names_and_taxonomy" } ] }, { "name": "stress response NST1-like protein", "type": "synonym", "evidence": [ { "id": "NP_001319722", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319722" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J4G9", "url": "https://www.uniprot.org/uniprotkb/F4J4G9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J4G9", "locus": {} } ], "crossref": [ { "id": "AT3G51640", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G51640", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824327", "url": "https://www.ncbi.nlm.nih.gov/gene/824327", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G51640", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G51640", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VIFACKL", "url": "https://omabrowser.org/oma/group/VIFACKL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR38709", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38709", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38709:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38709:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001319722", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319722", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G51640", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G51640", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LQW2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LQW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQW2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4G9", "url": "https://www.uniprot.org/uniprotkb/F4J4G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4G9-1", "url": "https://www.uniprot.org/uniprotkb/F4J4G9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCILCGIQKWSRQVATMLPWFVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLVTLFWYEVLMPQLSTWRVRRNAQLRERERLEAIELQKLKKNATRRCRNCSNPYRDQNPGGGKFMCSYCGHVSKRPVLDMALSSGLEISGSGILKDLVGRGGKMLNGKGWSENGYLHRQEWSDNSTWTSGSSYWRNNSGDTFEGDENCLVEKSYSGGVVFACRLLTSFFMSILWLWRKIFRFSSSVGDSSLDPEQRRMLARQGENGTSCHESRVEKARRKAEEKRQARLEKEHSEEEERKQREEVARLVEERRRLRDEILEAEKCSKLSVAAKEKDTKEAEKKRQERRKERDRASSKSNSDGEEVDKRTRKETEQKRGLYKSDHLEQERHAPDNLRVPNMERRHGHGLENNVTSNGTKSGGRYFDRMKGTFLSSSKAFTDSRLFGRGVNTSATIARENKPIGSADNSHTYAHSSHTNPPEFVAMKYVPNEEERNTNNPVVSEPKPSREPKKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQSSQVPSQVSSIRTFDNPISFGLPSPFTIPVYSSGSTTSSLGFSPPTELVFPQPGEDERFEDPCYVPDPISLLGPVSESLDLRAAGYETGIGQVKYQAMKNTPSCEANKPSPIESPLSRSRAADEKQANDGSWQMWKSPLGQNGLGLVGGSANWVIPSEISRSIEESDMHHAPQHRTESLFSKEDCQLHQGAYSQRKDYLEHDQRSGVFSPITGPTTTDPWSQKMFFPALSGIESPFSTTTQTKSVLNNAAGYRSPTGSGSDNPFEHPSPNHWLKKVKSSGNGSGKQVLAAGEVENHQKDVESFW", "length": 842, "header": "tr|F4J4G9-1|F4J4G9_ARATH Isoform 1 of Stress response NST1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J4G9-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LQW2-1", "url": "https://www.uniprot.org/uniprotkb/F4J4G9/entry#A0A1I9LQW2-1", "sequence": { "sequence": "MCILCGIQKWSRQVATMLPWFVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLVTLFWYEVLMPQLSTWRVRRNAQLRERERLEAIELQKLKKNATRRCRNCSNPYRDQNPGGGKFMCSYCGHVSKRPVLDMALSSGLEISGSGILKDLVGRGGKMLNGKGWSENGYLHRQEWSDNSTWTSGSSYWRNNSGDTFEGDENCLVEKSYSGGVVFACRLLTSFFMSILWLWRKIFRFSSSVGDSSLDPEQRRMLARQGENGTSCHESRVEKARRKAEEKRQARLEKEHSEEEERKQREEVARLVEERRRLRDEILEAEKCSKLSVAAKEKDTKEAEKKRQERRKERDRASSKSNSDGEEVDKRTRKETEQKRGLYKSDHLEQERHAPDNLRVPNMERRHGHGLENNVTSNGTKSGGRYFDRMKGTFLSSSKAFTDSRLFGRGVNTSATIARENKPIGSADNSHTYAHSSHTNPPEFVAMKYVPNEEERNTNNPVVSEPKPSREPKKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQSSQVPSQVSSIRTFDNPISFGLPSPFTIPVYSSGSTTSSLGFSPPTELVFPQPGEDERFEDPCYVPDPISLLGPVSESLDLRAAGYETGIGQVKYQAMKNTPSCEANKPSPIESPLSRSRAADEKQANDGSWQMWKSPLGQNGLGLVGGSANWVIPSEISRSIEESDMHHAPQHRTESLFSKEDCQLHQGAYSQRKDYLEHDQRSGVFSPITGPTTTDPWSQKMFFPALSGIESPFSTTTQTKSVLNNAAGYRSPTGSGSDNPFEHPSPNHWLKICECTGR", "length": 819, "header": "tr|A0A1I9LQW2-1|F4J4G9_ARATH Computationally mapped isoform of Stress response NST1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J4G9-1" }, "locus": { "chromosome": "3", "start_pos": 19153760, "end_pos": 19157282, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G51640.3", "url": "https://www.ensemblgenomes.org/id/AT3G51640.3" }, { "database": "Ensembl Peptide", "id": "AT3G51640.3", "url": "https://www.ensemblgenomes.org/id/AT3G51640.3" } ] } }, { "isoform_ac": "F4J4G9-1", "url": "https://www.uniprot.org/uniprotkb/F4J4G9/entry#F4J4G9-1", "sequence": { "sequence": "MCILCGIQKWSRQVATMLPWFVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLVTLFWYEVLMPQLSTWRVRRNAQLRERERLEAIELQKLKKNATRRCRNCSNPYRDQNPGGGKFMCSYCGHVSKRPVLDMALSSGLEISGSGILKDLVGRGGKMLNGKGWSENGYLHRQEWSDNSTWTSGSSYWRNNSGDTFEGDENCLVEKSYSGGVVFACRLLTSFFMSILWLWRKIFRFSSSVGDSSLDPEQRRMLARQGENGTSCHESRVEKARRKAEEKRQARLEKEHSEEEERKQREEVARLVEERRRLRDEILEAEKCSKLSVAAKEKDTKEAEKKRQERRKERDRASSKSNSDGEEVDKRTRKETEQKRGLYKSDHLEQERHAPDNLRVPNMERRHGHGLENNVTSNGTKSGGRYFDRMKGTFLSSSKAFTDSRLFGRGVNTSATIARENKPIGSADNSHTYAHSSHTNPPEFVAMKYVPNEEERNTNNPVVSEPKPSREPKKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQSSQVPSQVSSIRTFDNPISFGLPSPFTIPVYSSGSTTSSLGFSPPTELVFPQPGEDERFEDPCYVPDPISLLGPVSESLDLRAAGYETGIGQVKYQAMKNTPSCEANKPSPIESPLSRSRAADEKQANDGSWQMWKSPLGQNGLGLVGGSANWVIPSEISRSIEESDMHHAPQHRTESLFSKEDCQLHQGAYSQRKDYLEHDQRSGVFSPITGPTTTDPWSQKMFFPALSGIESPFSTTTQTKSVLNNAAGYRSPTGSGSDNPFEHPSPNHWLKKVKSSGNGSGKQVLAAGEVENHQKDVESFW", "length": 842, "header": "tr|F4J4G9-1|F4J4G9_ARATH Isoform 1 of Stress response NST1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J4G9-1" }, "locus": { "chromosome": "3", "start_pos": 19153734, "end_pos": 19157394, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G51640.2", "url": "https://www.ensemblgenomes.org/id/AT3G51640.2" }, { "database": "Ensembl Peptide", "id": "AT3G51640.2", "url": "https://www.ensemblgenomes.org/id/AT3G51640.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 652, "end_pos": 652, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J4G9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J4G9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser652" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQW2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQW2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4J4G9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J4G9" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LQW2", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LQW2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G51640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G51640", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4J4G9", "url": "https://www.uniprot.org/uniprotkb/F4J4G9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 443, "end_pos": 445, "annotation": "n_glycosylation_sequon" }, { "start_pos": 819, "end_pos": 821, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 652 ], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 190, "end_pos": 192 }, { "start_pos": 259, "end_pos": 261 }, { "start_pos": 405, "end_pos": 407 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 443, "end_pos": 445 }, { "start_pos": 819, "end_pos": 821 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J9K9-1", "uniprot_ac": "F4J9K9", "uniprot_id": "F4J9K9_ARATH", "mass": { "chemical_mass": 73454.0, "monoisotopic_mass": 73454.0 }, "refseq": { "ac": "NP_187241", "name": "neurofilament protein-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187241" }, "gene_names": [ { "name": "F2O10.14", "type": "synonym", "evidence": [ { "id": "NP_187241", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187241" }, { "id": "F4J9K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9K9" } ] } ], "protein_names": [ { "name": "Neurofilament protein-like protein", "type": "synonym", "evidence": [ { "id": "F4J9K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9K9/entry#names_and_taxonomy" } ] }, { "name": "neurofilament protein-like protein", "type": "synonym", "evidence": [ { "id": "NP_187241", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187241" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J9K9", "url": "https://www.uniprot.org/uniprotkb/F4J9K9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J9K9", "locus": {} } ], "crossref": [ { "id": "F4J9K9", "url": "https://alphafold.ebi.ac.uk/entry/F4J9K9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G05900", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G05900", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "819759", "url": "https://www.ncbi.nlm.nih.gov/gene/819759", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G05900", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G05900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TTDDETH", "url": "https://omabrowser.org/oma/group/TTDDETH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A1I9LR13", "url": "https://www.orthodb.org/?gene=A0A1I9LR13", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4J9K9", "url": "https://www.orthodb.org/?gene=F4J9K9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37729", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37729", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37729:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37729:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_187241", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187241", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G05900", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G05900", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LR13", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LR13-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J9K9", "url": "https://www.uniprot.org/uniprotkb/F4J9K9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J9K9-1", "url": "https://www.uniprot.org/uniprotkb/F4J9K9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASDSHTPTVTTPEKPLENKVSEEAKLMEKEIISSDSADVVNDKPASDSNPVVTKEEEIDQTPAGEPEKESPAVVEEVGAVVKAEESTETVKHENGEKGAEQVELKEPILVKETVAEVNVETVDTEKAEEKQTVENVLIEDHKDQEETKIVDVSESTDEAEVQQVEPVDVQPVKDAEKAEEKPTVESVVEEETKDREETKIVDVSESAGDKQVESVDVQSVRDVSAEIAEEKVKDVEALEVEPKPETSEKVETQLEKARELETEVEVVKAEETAEATEQAKVELEGKLEDVIVEEKDSEINSKDEKTSESGSALCSEEILSTIQESNTDPIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPSESSAALSPEKVVPINQDSDTKPKEETEGDAAAPADVIEKAITEEKYVVDEPSKDETTSESGSALCPEKAVPTNQDLDTEPKKETEEDVSSPADIIEKAITEEKHVVEEPSKDEKTSESGSALSPEKVVPTNQDSDTEPKKETEGDVPSPADVIEKAITDEKHVVEEPLKDEQENVSEAKDVVTKLAAEDENIKKDTDTPVAEGKSEETLKETDTESVEKEAAANKQEEPITEKVAEVVETAPVAKEIDEAKQQPEVTTKEAPAKQKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTEEPKEEIKV", "length": 673, "header": "tr|F4J9K9-1|F4J9K9_ARATH Isoform 1 of Neurofilament protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J9K9-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LR13-1", "url": "https://www.uniprot.org/uniprotkb/F4J9K9/entry#A0A1I9LR13-1", "sequence": { "sequence": "MEKEIISSDSADVVNDKPASDSNPVVTKEEEIDQTPAGEPEKESPAVVEEVGAVVKAEESTETVKHENGEKGAEQVELKEPILVKETVAEVNVETVDTEKAEEKQTVENVLIEDHKDQEETKIVDVSESTDEAEVQQVEPVDVQPVKDAEKAEEKPTVESVVEEETKDREETKIVDVSESAGDKQVESVDVQSVRDVSAEIAEEKVKDVEALEVEPKPETSEKVETQLEKARELETEVEVVKAEETAEATEQAKVELEGKLEDVIVEEKDSEINSKDEKTSESGSALCSEEILSTIQESNTDPIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPSESSAALSPEKVVPINQDSDTKPKEETEGDAAAPADVIEKAITEEKYVVDEPSKDETTSESGSALCPEKAVPTNQDLDTEPKKETEEDVSSPADIIEKAITEEKHVVEEPSKDEKTSESGSALSPEKVVPTNQDSDTEPKKETEGDVPSPADVIEKAITDEKHVVEEPLKDEQENVSEAKDVVTKLAAEDENIKKDTDTPVAEGKSEETLKETDTESVEKEAAANKQEEPITEKVAEVVETAPVAKEIDEAKQQPEVTTKEAPAKQKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTEEPKEEIKV", "length": 646, "header": "tr|A0A1I9LR13-1|F4J9K9_ARATH Computationally mapped isoform of Neurofilament protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J9K9-1" }, "locus": { "chromosome": "3", "start_pos": 1761408, "end_pos": 1763348, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G05900.2", "url": "https://www.ensemblgenomes.org/id/AT3G05900.2" }, { "database": "Ensembl Peptide", "id": "AT3G05900.2", "url": "https://www.ensemblgenomes.org/id/AT3G05900.2" } ] } }, { "isoform_ac": "F4J9K9-1", "url": "https://www.uniprot.org/uniprotkb/F4J9K9/entry#F4J9K9-1", "sequence": { "sequence": "MASDSHTPTVTTPEKPLENKVSEEAKLMEKEIISSDSADVVNDKPASDSNPVVTKEEEIDQTPAGEPEKESPAVVEEVGAVVKAEESTETVKHENGEKGAEQVELKEPILVKETVAEVNVETVDTEKAEEKQTVENVLIEDHKDQEETKIVDVSESTDEAEVQQVEPVDVQPVKDAEKAEEKPTVESVVEEETKDREETKIVDVSESAGDKQVESVDVQSVRDVSAEIAEEKVKDVEALEVEPKPETSEKVETQLEKARELETEVEVVKAEETAEATEQAKVELEGKLEDVIVEEKDSEINSKDEKTSESGSALCSEEILSTIQESNTDPIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPSESSAALSPEKVVPINQDSDTKPKEETEGDAAAPADVIEKAITEEKYVVDEPSKDETTSESGSALCPEKAVPTNQDLDTEPKKETEEDVSSPADIIEKAITEEKHVVEEPSKDEKTSESGSALSPEKVVPTNQDSDTEPKKETEGDVPSPADVIEKAITDEKHVVEEPLKDEQENVSEAKDVVTKLAAEDENIKKDTDTPVAEGKSEETLKETDTESVEKEAAANKQEEPITEKVAEVVETAPVAKEIDEAKQQPEVTTKEAPAKQKHSNSIISKVKQSLVKAKKAIIGRSPSSKTITTEEPKEEIKV", "length": 673, "header": "tr|F4J9K9-1|F4J9K9_ARATH Isoform 1 of Neurofilament protein-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J9K9-1" }, "locus": { "chromosome": "3", "start_pos": 1761205, "end_pos": 1763984, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G05900.1", "url": "https://www.ensemblgenomes.org/id/AT3G05900.1" }, { "database": "Ensembl Peptide", "id": "AT3G05900.1", "url": "https://www.ensemblgenomes.org/id/AT3G05900.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LR13", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR13" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LR13", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR13" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LR13", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR13" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G05900", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G05900", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9VLL3-1", "protein_name": "A-kinase anchor protein 200", "gene_name": "Akap200", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGKAQSKRSIDITTDPKKVGEGDEVAGKVEKIDVDQKTDAPAVNGDAATPKEGGDEAAAVEKKETEEHSENDKDLTTEKSAAVAEGGDAVAETAKGEEGSPKEAAAGEDITPLADESIKSKSKKDKVKKKWSFRSISFGKKDKQKPAKSEEATSPTSGTTSPTTAEAEAAPAGDAAVAEPSVATNGEAEKPAETATATSEPASKDEKPAENGSATEQEKQANGETEKAAPAPSTVEEAAKPKPAEEPATVTATESNTTATEEVPVKESQPEPEVVTNGHGAGEALTNGSSNGLAESPVTETAPVADNIPSNVDDEPPHQNGTNGTTTPPPTPVATEIEKGQQIEASSEVIETVTPSQAEEEVVAAIIKAVSSEPEAETETETEAEGFVLVAPVSTEVEVPVSISPIEPVAEVSQVKIEPLVEIPEVEAKSVADVSEADTESVPKVSELKTEVSEIEFESVIVETRSSSPPPPLPKSPPPSRVSAFVLSEDVIEEQVTPNVPEVNDVKPDEIEQQAISIVAEITEQAAEIVTEQEKQQEEAKVDSVPETIEESSSTVVVEEVLPVQNDEVTAPSPTPDDVQKPIEDQDTPDEKESYPVPDPIDPAAVNDEVAVTEAVDCEVEKETGSISSNVAESSSVSDEQAAIENQVEILEEQTVAVEETTEQETSDQQVISEEAHSDNDKENEIDLVENIISDLDAPITKAGGDLLVELDARSAEQEGESNNKVDLAKDLKEKNAAAADVTTQEQLPVTCE", "length": 753 }, "evidence": [ { "id": "F4J9K9", "url": "https://omabrowser.org/oma/group/F4J9K9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4J9K9", "url": "https://www.uniprot.org/uniprotkb/F4J9K9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F4J9K9", "url": "https://www.uniprot.org/uniprotkb/F4J9K9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 540, "end_pos": 542, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J9K9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 673, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J9K9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J9K9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 540, "end_pos": 542 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J6C9-1", "uniprot_ac": "F4J6C9", "uniprot_id": "F4J6C9_ARATH", "mass": { "chemical_mass": 27895.0, "monoisotopic_mass": 27895.0 }, "refseq": { "ac": "NP_001319578", "name": "tetratricopeptide repeat (TPR)-containing protein", "summary": "", "url": 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"evidence": [ { "id": "NP_001319578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001319578" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J6C9", "url": "https://www.uniprot.org/uniprotkb/F4J6C9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ENA", "url": "https://www.uniprot.org/uniprotkb/F4J6C9", "locus": { "chromosome": "CP002686.1", "start_pos": 6040633, "end_pos": 6039408, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "AT3G17668", "url": "https://www.ensemblgenomes.org/id/AT3G17668" } ] } } ], "crossref": [ { "id": "F4J6C9", "url": "https://alphafold.ebi.ac.uk/entry/F4J6C9", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G17668", "url": 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} ], "sequence": { "sequence": "MSSVALPAMSCRSSGEQVKEIRVCTNRTCRRQGSFQILETLTALAPPELRVTHCACLGRCGSGPNLVALPQGLILRHCATPSRAAEILFSLCGDGREASSSSAVTDALTALALTNNALSQIDAGNFSEAEALLTQALELKPYGGLHRIFKHRSVAKLGMLDYSGALEDISQALALAPNYSEPYICQGDVYVAKGQYDLAEKSYLTCLEIDPSLRRSKPFKVCFVFTLYLALKHRGPSLLRLASMSLAKMNAFSYNVII", "length": 258, "header": "tr|F4J6C9-1|F4J6C9_ARATH Isoform 1 of Tetratricopeptide repeat (TPR)-containing protein OS=Arabidopsis thaliana OX=3702 GN=ENA PE=1 SV=2 CANONICAL=F4J6C9-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LR22-1", "url": "https://www.uniprot.org/uniprotkb/F4J6C9/entry#A0A1I9LR22-1", "sequence": { "sequence": "MAVNACLSPPEMMAVRPGEGVPNSKSTQGKTRLYLTKPSWIVRTQSGAKTCMKSKAKGRCVICHGSGRVDCFNCCGKGRTNCVDVEMLPRGEWPKWYS", "length": 98, "header": "tr|A0A1I9LR22-1|F4J6C9_ARATH Computationally mapped isoform of Tetratricopeptide repeat (TPR)-containing protein OS=Arabidopsis thaliana OX=3702 GN=ENA PE=1 SV=1 CANONICAL=F4J6C9-1" }, "locus": { "chromosome": "3", "start_pos": 6039408, "end_pos": 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"url": "https://www.ensemblgenomes.org/id/AT3G17670.2" }, { "database": "Ensembl Peptide", "id": "AT3G17670.2", "url": "https://www.ensemblgenomes.org/id/AT3G17670.2" } ] } }, { "isoform_ac": "Q9LUM9-1", "url": "https://www.uniprot.org/uniprotkb/F4J6C9/entry#Q9LUM9-1", "sequence": { "sequence": "MSSVALPAMSCRSSGEQVKEIRVCTNRTCRRQGSFQILETLTALAPPELRVTHCACLGRCGSGPNLVALPQGLILRHCATPSRAAEILFSLCGDGREASSSSAVTDALTALALTNNALSQIDAGNFSEAEALLTQALELKPYGGLHRIFKHRSVAKLGMLDYSGALEDISQALALAPNYSEPYICQGDVYVAKGQYDLAEKSYLTCLEIDPSLRRSKPFKARIAKLQQKVVELDVT", "length": 236, "header": "tr|Q9LUM9-1|F4J6C9_ARATH Computationally mapped isoform of Tetratricopeptide repeat (TPR)-containing protein OS=Arabidopsis thaliana OX=3702 GN=ENA PE=1 SV=1 CANONICAL=F4J6C9-1" }, "locus": { "chromosome": "3", "start_pos": 6040797, "end_pos": 6042196, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G17670.1", "url": "https://www.ensemblgenomes.org/id/AT3G17670.1" }, { "database": "Ensembl Peptide", "id": "AT3G17670.1", "url": "https://www.ensemblgenomes.org/id/AT3G17670.1" } ] } }, { "isoform_ac": "Q9LUN0-1", "url": "https://www.uniprot.org/uniprotkb/F4J6C9/entry#Q9LUN0-1", "sequence": { "sequence": "MAVNACLSPPEMMAVRPGEGVPNSKSTQGKTRLYLTKPSWIVRTQSGAKTCMKSKAKGRCVICHGSGRVDCFNCCGKGRTNCVDVEMLPRGEWPKWCKSCGGSGLSDCSRCLGTGEYRYIMGFRFLNQNDDADPQ", "length": 135, "header": "tr|Q9LUN0-1|F4J6C9_ARATH Computationally mapped isoform of Tetratricopeptide repeat (TPR)-containing protein OS=Arabidopsis thaliana OX=3702 GN=ENA PE=1 SV=1 CANONICAL=F4J6C9-1" }, "locus": { "chromosome": "3", "start_pos": 6039408, "end_pos": 6040633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G17668.1", "url": "https://www.ensemblgenomes.org/id/AT3G17668.1" }, { "database": "Ensembl Peptide", "id": "AT3G17668.1", "url": "https://www.ensemblgenomes.org/id/AT3G17668.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 40, "end_pos": 40, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LUN0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LUN0" } ], "site_lbl": "Thr40" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LUM9", "url": "https://www.uniprot.org/uniprotkb/Q9LUM9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LUM9", "url": "https://www.uniprot.org/uniprotkb/Q9LUM9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G17668", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G17668", "resource": "KEGG Pathway" }, { "id": "ath:AT3G17670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G17670", "resource": "KEGG Pathway" } ], "orthologs": [], 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"https://www.ncbi.nlm.nih.gov/protein/NP_186879", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G02300", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G02300", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LR23", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LR23-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J609", "url": "https://www.uniprot.org/uniprotkb/F4J609", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J609-1", "url": "https://www.uniprot.org/uniprotkb/F4J609-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDIGEIIGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPPELFGCPAGANSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAAIAEPRENDGTLSTSRLWVWGQNQGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVACGGVHTCALSLEGALYAWGGGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAANEKSSYAWYPSPVDWCVGQVRKLAAGGGHSAVLTDAFSLKELCEFQLADSVNLSNASEIQDVAFRMGSEALARLCERLREQLLDGDFTNGEEVY", "length": 471, "header": "tr|F4J609-1|F4J609_ARATH Isoform 1 of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J609-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LR23-1", "url": "https://www.uniprot.org/uniprotkb/F4J609/entry#A0A1I9LR23-1", "sequence": { "sequence": "MFSSLKGEFLKMDIGEIIGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPPELFGCPAGANSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAAIAEPRENDGTLSTSRLWVWGQNQGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVACGGVHTCALSLEGALYAWGGGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAANEKSSYAWYPSPVDWCVGQVRKLAAGGGHSAVLTDAFSLKELCEFQLADSVNLSNASEIQDVAFRMGSEALARLCERLREQLLDGDFTNGEEVY", "length": 482, "header": "tr|A0A1I9LR23-1|F4J609_ARATH Computationally mapped isoform of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J609-1" }, "locus": { "chromosome": "3", "start_pos": 461338, "end_pos": 464222, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G02300.2", "url": "https://www.ensemblgenomes.org/id/AT3G02300.2" }, { "database": "Ensembl Peptide", "id": "AT3G02300.2", "url": "https://www.ensemblgenomes.org/id/AT3G02300.2" } ] } }, { "isoform_ac": "F4J609-1", "url": "https://www.uniprot.org/uniprotkb/F4J609/entry#F4J609-1", "sequence": { "sequence": "MDIGEIIGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPPELFGCPAGANSRWLDISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAAIAEPRENDGTLSTSRLWVWGQNQGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELVKIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVACGGVHTCALSLEGALYAWGGGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDVRLVACGHSHTLVYMREGRICGWGYNSYGQAANEKSSYAWYPSPVDWCVGQVRKLAAGGGHSAVLTDAFSLKELCEFQLADSVNLSNASEIQDVAFRMGSEALARLCERLREQLLDGDFTNGEEVY", "length": 471, "header": "tr|F4J609-1|F4J609_ARATH Isoform 1 of Regulator of chromosome condensation (RCC1) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J609-1" }, "locus": { "chromosome": "3", "start_pos": 461072, "end_pos": 464223, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G02300.1", "url": "https://www.ensemblgenomes.org/id/AT3G02300.1" }, { "database": "Ensembl Peptide", "id": "AT3G02300.1", "url": "https://www.ensemblgenomes.org/id/AT3G02300.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LR23", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR23" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LR23", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR23" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G02300", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G02300", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4J609", "url": "https://www.uniprot.org/uniprotkb/F4J609" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 429, "end_pos": 431, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J609-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 471, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J609-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J609" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J609", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J609" }, { "id": "PF25390", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25390" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RCC1-like", "eco_id": "ECO_0000259", "start_pos": 165, "end_pos": 412, "start_aa": "Thr", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 28, "end_pos": 30 }, { "start_pos": 328, "end_pos": 330 }, { "start_pos": 429, "end_pos": 431 }, { "start_pos": 432, "end_pos": 434 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J668-1", "uniprot_ac": "F4J668", "uniprot_id": "F4J668_ARATH", "mass": { "chemical_mass": 17155.0, "monoisotopic_mass": 17155.0 }, "refseq": { "ac": "NP_001154605", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154605" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4J668", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J668/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001154605", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154605" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J668", "url": "https://www.uniprot.org/uniprotkb/F4J668" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J668", "locus": {} } ], "crossref": [ { "id": "F4J668", "url": "https://alphafold.ebi.ac.uk/entry/F4J668", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G11165", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G11165", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "7922337", "url": "https://www.ncbi.nlm.nih.gov/gene/7922337", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G11165", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G11165", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001154605", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154605", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G11165", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G11165", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LR88", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LR88-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J668", "url": "https://www.uniprot.org/uniprotkb/F4J668", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J668-1", "url": "https://www.uniprot.org/uniprotkb/F4J668-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPNNNLRSLIALFGEKKITNKRRRRKEERTLISDDATQQQSEIHNRSGSKRAERIVYVGVEFKNFVPSVMNGFYAFCALETIQVFEYLRTMERDLRERFPEVEVQQDPLFVSSPQLPAAAADAAIYVRLVAATTCGKTQPPAVTKRTCSL", "length": 151, "header": "tr|F4J668-1|F4J668_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J668-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LR88-1", "url": "https://www.uniprot.org/uniprotkb/F4J668/entry#A0A1I9LR88-1", "sequence": { "sequence": "MMPLNNSLRSIIAQSRNFSTRSRGNFSSPRRSRGSKRAERIVYVGVEFKNFVPSVMNGFYAFCALETIQVFEYLRTMERDLRERFPEVEVQQDPLFVSSPQLPAAAADAAIYVRLVAATTCGKTQPPAVTKRTCSL", "length": 136, "header": "tr|A0A1I9LR88-1|F4J668_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J668-1" }, "locus": { "chromosome": "3", "start_pos": 3497946, "end_pos": 3498891, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G11165.2", "url": "https://www.ensemblgenomes.org/id/AT3G11165.2" }, { "database": "Ensembl Peptide", "id": "AT3G11165.2", "url": "https://www.ensemblgenomes.org/id/AT3G11165.2" } ] } }, { "isoform_ac": "F4J668-1", "url": "https://www.uniprot.org/uniprotkb/F4J668/entry#F4J668-1", "sequence": { "sequence": "MAPNNNLRSLIALFGEKKITNKRRRRKEERTLISDDATQQQSEIHNRSGSKRAERIVYVGVEFKNFVPSVMNGFYAFCALETIQVFEYLRTMERDLRERFPEVEVQQDPLFVSSPQLPAAAADAAIYVRLVAATTCGKTQPPAVTKRTCSL", "length": 151, "header": "tr|F4J668-1|F4J668_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J668-1" }, "locus": { "chromosome": "3", "start_pos": 3497806, "end_pos": 3499090, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G11165.1", "url": "https://www.ensemblgenomes.org/id/AT3G11165.1" }, { "database": "Ensembl Peptide", "id": "AT3G11165.1", "url": "https://www.ensemblgenomes.org/id/AT3G11165.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, 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Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LR88", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LR88" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": 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"MKPDPTRRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGKVKTSATLLDREEMGLFPGSGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKDMCPLEHAFDEPHKDFLDLKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCRIQ", "length": 215, "header": "tr|F4JBJ9-1|F4JBJ9_ARATH Isoform 1 of HNH endonuclease OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBJ9-1" }, "locus": { "chromosome": "3", "start_pos": 17498279, "end_pos": 17500980, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47490.3", "url": "https://www.ensemblgenomes.org/id/AT3G47490.3" }, { "database": "Ensembl Peptide", "id": "AT3G47490.3", "url": "https://www.ensemblgenomes.org/id/AT3G47490.3" } ] } }, { "isoform_ac": "Q3EAN6-1", "url": "https://www.uniprot.org/uniprotkb/F4JBJ9/entry#Q3EAN6-1", "sequence": { "sequence": "MDWPTTTLISRRICNLLIFFVKLNHKNLSIDSDNPQHSAMKPDPTRRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGKVKTSATLLDREEMGLFPGSGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKVCPLQFSLHE", "length": 176, "header": "tr|Q3EAN6-1|F4JBJ9_ARATH Computationally mapped isoform of HNH endonuclease OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBJ9-1" }, "locus": { "chromosome": "3", "start_pos": 17498337, "end_pos": 17499752, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47490.2", "url": "https://www.ensemblgenomes.org/id/AT3G47490.2" }, { "database": "Ensembl Peptide", "id": "AT3G47490.2", "url": "https://www.ensemblgenomes.org/id/AT3G47490.2" } ] } }, { "isoform_ac": "Q9SN88-1", "url": "https://www.uniprot.org/uniprotkb/F4JBJ9/entry#Q9SN88-1", "sequence": { "sequence": "MDWPTTTLISRRICNLLIFFVKLNHKNLSIDSDNPQHSAMKPDPTRRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGKVKTSATLLDREEMGLFPGSGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCRIQ", "length": 234, "header": "tr|Q9SN88-1|F4JBJ9_ARATH Computationally mapped isoform of HNH endonuclease OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBJ9-1" }, "locus": { "chromosome": "3", "start_pos": 17498309, "end_pos": 17500980, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47490.1", "url": "https://www.ensemblgenomes.org/id/AT3G47490.1" }, { "database": "Ensembl Peptide", "id": "AT3G47490.1", "url": "https://www.ensemblgenomes.org/id/AT3G47490.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 14, "end_pos": 14, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A0A1I9LRA9", "url": 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"keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, 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"MTGIISSIKESSFFKSGFIDKRLIKKRLTGLALGQLLSVMIAGTGIFSQLLVKKYGVNIPTTQSLLNYILLCVYLLVLVKRGVLWETIKTKSIYFAPLALVDLEANYIVVKAYQYTTITSVMLLDCFTIPCVVVLSRIFLKTRFTFVHIIAVLIALAGMAILVVSDIIEGESANGGSNPLLGDFLCLASSVCYAISNVGQEATVKKYDRVTYLAMIGLYGSIFCGIQIAILERNELATMAWSGGVVGYIVGFALCLFIMYSFTPTMMEIAGATVMNLSLLTSDMFGIIVAIFVFDRDLSWLYFLSFFVIVSALVIYNLSAPHVKSSEVQNLINNDNSNNNNISNYNNGSLNDSSNNNNNSNNNSSDLTNSSTNLILDNGDEITPGGADILSSTVDEITTSGESEENLNGLENNENNV", "length": 417 }, "evidence": [ { "id": "F4J890", "url": "https://omabrowser.org/oma/group/F4J890/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5T1Q4-1", "protein_name": "Solute carrier family 35 member F1", "gene_name": "SLC35F1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"MIPPEPPQPQLQPPPPPAPPNHVVTTIENLPAEGSGGVSLSASSRASMRQRIRKVLNREMLISVALGQVLSLLVCGIGLTSKYLAEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLAILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSVQLLDCFVIPVVILLSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEESIIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGLVLYSSTSTYIAQDPRVYKQFRNPSGPVVDLPSTAQVEPSVTYTSLGQETEEEPHVRVA", "length": 408 }, "evidence": [ { "id": "F4J890", "url": "https://omabrowser.org/oma/group/F4J890/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4J890", "url": "https://www.uniprot.org/uniprotkb/F4J890" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F4J890", "url": "https://www.uniprot.org/uniprotkb/F4J890" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J890-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 363, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J890-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J890" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J956-1", "uniprot_ac": "F4J956", "uniprot_id": "F4J956_ARATH", "mass": { "chemical_mass": 5669.0, "monoisotopic_mass": 5669.0 }, "refseq": { "ac": "NP_001154666", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154666" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4J956", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J956/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001154666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154666" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J956", "url": "https://www.uniprot.org/uniprotkb/F4J956" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J956", "locus": {} } ], "crossref": [ { "id": "AT3G46616", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G46616", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "7922443", "url": "https://www.ncbi.nlm.nih.gov/gene/7922443", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G46616", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G46616", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001154666", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154666", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G46616", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G46616", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LS20", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LS20-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J956", "url": "https://www.uniprot.org/uniprotkb/F4J956", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J956-1", "url": "https://www.uniprot.org/uniprotkb/F4J956-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSDFGSVKFWFSSQEANEGSCFRPLAGNFQVKRTKFRRFSGSSQQGVCI", "length": 50, "header": "tr|F4J956-1|F4J956_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J956-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LS20-1", "url": "https://www.uniprot.org/uniprotkb/F4J956/entry#A0A1I9LS20-1", "sequence": { "sequence": "MQSDFGSVKFWFSSQEANEGSCFRPLAGNFQVKRTKFRR", "length": 39, "header": "tr|A0A1I9LS20-1|F4J956_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J956-1" }, "locus": { "chromosome": "3", "start_pos": 17173527, "end_pos": 17173982, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G46616.3", "url": "https://www.ensemblgenomes.org/id/AT3G46616.3" }, { "database": "Ensembl Peptide", "id": "AT3G46616.3", "url": "https://www.ensemblgenomes.org/id/AT3G46616.3" } ] } }, { "isoform_ac": "F4J956-1", "url": "https://www.uniprot.org/uniprotkb/F4J956/entry#F4J956-1", "sequence": { "sequence": "MQSDFGSVKFWFSSQEANEGSCFRPLAGNFQVKRTKFRRFSGSSQQGVCI", "length": 50, "header": "tr|F4J956-1|F4J956_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J956-1" }, "locus": { "chromosome": "3", "start_pos": 17172972, "end_pos": 17173752, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G46616.2", "url": "https://www.ensemblgenomes.org/id/AT3G46616.2" }, { "database": "Ensembl Peptide", "id": "AT3G46616.2", "url": "https://www.ensemblgenomes.org/id/AT3G46616.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LS20", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS20" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LS20", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS20" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G46616", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G46616", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JFS3-1", "uniprot_ac": "F4JFS3", "uniprot_id": "F4JFS3_ARATH", "mass": { "chemical_mass": 140961.0, "monoisotopic_mass": 140961.0 }, "refseq": { "ac": "NP_001118623", "name": "GPI-anchored adhesin-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118623" }, "gene_names": [], "protein_names": [ { "name": "GPI-anchored adhesin-like protein", "type": "synonym", "evidence": [ { "id": "NP_001118623", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118623" }, { "id": "F4JFS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JFS3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JFS3", "url": "https://www.uniprot.org/uniprotkb/F4JFS3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JFS3", "locus": {} } ], "crossref": [ { "id": "F4JFS3", "url": "https://alphafold.ebi.ac.uk/entry/F4JFS3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G14172", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G14172", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "5007999", "url": "https://www.ncbi.nlm.nih.gov/gene/5007999", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G14172", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G14172", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PNFSDMR", "url": "https://omabrowser.org/oma/group/PNFSDMR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31008", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31008", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31008:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31008:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001118623", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001118623", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G14172", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G14172", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LS39", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LS39-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LS39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JFS2", "url": "https://www.uniprot.org/uniprotkb/F4JFS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JFS2-1", "url": "https://www.uniprot.org/uniprotkb/F4JFS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JFS3", "url": "https://www.uniprot.org/uniprotkb/F4JFS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JFS3-1", "url": "https://www.uniprot.org/uniprotkb/F4JFS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPAIPLDYAVFQLSPKRSRCELFVSTTGNTEKLASGLVKPFVAHLKVAEEQVSREVQSIRLEVESNKNAGTWFTKGTLERFVRFVSTPEVLELVSALDVEMSQLEAARKIYGEGTSDQRSSAKDSTDTTPAADVTKKELLKAIDLRLAAVRQDLATACNRASAAGFNPITVSELSQFADRFGANRLNEACTKFITLCQRRPELMSSWRVNQEEEAIRSSWESDMSIDDPSEDPSRDLATNRNQQHREYQTGMEEQSATGTSYCQHESKLKPQSSHDENDEEEEKSTVQNEPLVSQPRQLTRRLSVQERISMFENKQKENSGEKTAVAKSTELKRLSSDLSSSAGMEKVVVRRWSGASDMSIDLGNDRKDDTGDSPLCTPSSSSVSKDGSGASSKQFVGYNKKEQNGLSHAANPHRNEEECTSNNGGDWGMDEVESQNSSSTFLPKDKEVDLNVPFRTNNQVRHQGNSPDRYLEKNSKYKFHEKNPRASSDYTGNANINDDANNQMSDFISNRQNQIQFRDPQSHSLSTLQQLGGTEPIITSVQSNGVTAESPRKELMPSDRQSPLLEDRQRKTPFSGGSEQMKRPHSRRPEMGSAAVNTKPSAAINSVSDISESDTLIQVSPTEQVQRARPSKGSQELNDELKVKANELEKLFAEHMLRVPGDQSSSVRRGKPGKPSEQAVTSQLRRPVAQDLSSVQISDQKTLAMPTLTSNDEDKFKTPPTMKMVVTKDYGDTTRQNFPEISFSDNSRGKFYEQYMQKRDAKLKEDWSCRRTEKEAKLKVMQDILDRSNAEMKTKFSQSTGRRDSSARRAEKLVYFNSKLSAKKDQHPISSFQSEEDEDGSRSTQNKKLQQNKNNLLIARTTATSASRSAAKVSTLSAVRRRGQSEKHFAQSVPNFSEIKKEGMKPASGVGKNGVRTQVRSSIRPKAVNEEEKLRRPKIFRKGAAEAAELATDFSQLKSEDGVSVPLYLEQEQSGRNFNSHGTGISSDNAQLKASEESEASDDMEKEGMGEALDDTEVEAFTDAENEMPRLSQESEEWGSTGVANGESFSQLDAGSNTELPAAMASRHQTMGSILDSPGESTSPWNSRVKHRYPNEASELDASVDSPVGSPAFWNFSSLNHTESDTTQMRKKWGAAQKRAAGGNPSQNQCQQDVTKGLKRLLNFGRKNRAAESLADWISATTSEGDDDTDDGRDLANRSSEDLRKSRMGFLQSHPSGDSFNESELFTEHVQTTGTPLSFKLKEDQTTGASVKAPRSFFSLSNFRSKGK", "length": 1270, "header": "tr|F4JFS3-1|F4JFS3_ARATH Isoform 1 of GPI-anchored adhesin-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JFS3-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LS39-1", "url": "https://www.uniprot.org/uniprotkb/F4JFS3/entry#A0A1I9LS39-1", "sequence": { "sequence": "MLSSNSLQSGQEEQVSREVQSIRLEVESNKNAGTWFTKGTLERFVRFVSTPEVLELVSALDVEMSQLEAARKIYGEGTSDQRSSAKDSTDTTPAADVTKKELLKAIDLRLAAVRQDLATACNRASAAGFNPITVSELSQFADRFGANRLNEACTKFITLCQRRPELMSSWRVNQEEEAIRSSWESDMSIDDPSEDPSRDLATNRNQQHREYQTGMEEQSATGTSYCQHESKLKPQSSHDENDEEEEKSTVQNEPLVSQPRQLTRRLSVQERISMFENKQKENSGEKTAVAKSTELKRLSSDLSSSAGMEKVVVRRWSGASDMSIDLGNDRKDDTGDSPLCTPSSSSVSKDGSGASSKQFVGYNKKEQNGLSHAANPHRNEEECTSNNGGDWGMDEVESQNSSSTFLPKDKEVDLNVPFRTNNQVRHQGNSPDRYLEKNSKYKFHEKNPRASSDYTGNANINDDANNQMSDFISNRQNQIQFRDPQSHSLSTLQQLGGTEPIITSVQSNGVTAESPRKELMPSDRQSPLLEDRQRKTPFSGGSEQMKRPHSRRPEMGSAAVNTKPSAAINSVSDISESDTLIQVSPTEQVQRARPSKGSQELNDELKVKANELEKLFAEHMLRVPGDQSSSVRRGKPGKPSEQAVTSQLRRPVAQDLSSVQISDQKTLAMPTLTSNDEDKFKTPPTMKMVVTKDYGDTTRQNFPEISFSDNSRGKFYEQYMQKRDAKLKEDWSCRRTEKEAKLKVMQDILDRSNAEMKTKFSQSTGRRDSSARRAEKLVYFNSKLSAKKDQHPISSFQSEEDEDGSRSTQNKKLQQNKNNLLIARTTATSASRSAAKVSTLSAVRRRGQSEKHFAQSVPNFSEIKKEGMKPASGVGKNGVRTQVRSSIRPKAVNEEEKLRRPKIFRKGAAEAAELATDFSQLKSEDGVSVPLYLEQEQSGRNFNSHGTGISSDNAQLKASEESEASDDMEKEGMGEALDDTEVEAFTDAENEMPRLSQESEEWGSTGVANGESFSQLDAGSNTELPAAMASRHQTMGSILDSPGESTSPWNSRVKHRYPNEASELDASVDSPVGSPAFWNFSSLNHTESDTTQMRKKWGAAQKRAAGGNPSQNQCQQDVTKGLKRLLNFGRKNRAAESLADWISATTSEGDDDTDDGRDLANRSSEDLRKSRMGFLQSHPSGDSFNESELFTEHVQTTGTPLSFKLKEDQTTGASVKAPRSFFSLSNFRSKGK", "length": 1232, "header": "tr|A0A1I9LS39-1|F4JFS3_ARATH Computationally mapped isoform of GPI-anchored adhesin-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JFS3-1" }, "locus": { "chromosome": "3", "start_pos": 4698531, "end_pos": 4705629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G14172.3", "url": "https://www.ensemblgenomes.org/id/AT3G14172.3" }, { "database": "Ensembl Peptide", "id": "AT3G14172.3", "url": "https://www.ensemblgenomes.org/id/AT3G14172.3" } ] } }, { "isoform_ac": "F4JFS2-1", "url": "https://www.uniprot.org/uniprotkb/F4JFS3/entry#F4JFS2-1", "sequence": { "sequence": "MRPAIPLDYAVFQLSPKRSRCELFVSTTGNTEKLASGLVKPFVAHLKVAEEQVSREVQSIRLEVESNKNAGTWFVRFVSTPEVLELVSALDVEMSQLEAARKIYGEGTSDQRSSAKDSTDTTPAADVTKKELLKAIDLRLAAVRQDLATACNRASAAGFNPITVSELSQFADRFGANRLNEACTKFITLCQRRPELMSSWRVNQEEEAIRSSWESDMSIDDPSEDPSRDLATNRNQQHREYQTGMEEQSATGTSYCQHESKLKPQSSHDENDEEEEKSTVQNEPLVSQPRQLTRRLSVQERISMFENKQKENSGEKTAVAKSTELKRLSSDLSSSAGMEKVVVRRWSGASDMSIDLGNDRKDDTGDSPLCTPSSSSVSKDGSGASSKQFVGYNKKEQNGLSHAANPHRNEEECTSNNGGDWGMDEVESQNSSSTFLPKDKEVDLNVPFRTNNQVRHQGNSPDRYLEKNSKYKFHEKNPRASSDYTGNANINDDANNQMSDFISNRQNQIQFRDPQSHSLSTLQQLGGTEPIITSVQSNGVTAESPRKELMPSDRQSPLLEDRQRKTPFSGGSEQMKRPHSRRPEMGSAAVNTKPSAAINSVSDISESDTLIQVSPTEQVQRARPSKGSQELNDELKVKANELEKLFAEHMLRVPGDQSSSVRRGKPGKPSEQAVTSQLRRPVAQDLSSVQISDQKTLAMPTLTSNDEDKFKTPPTMKMVVTKDYGDTTRQNFPEISFSDNSRGKFYEQYMQKRDAKLKEDWSCRRTEKEAKLKVMQDILDRSNAEMKTKFSQSTGRRDSSARRAEKLVYFNSKLSAKKDQHPISSFQSEEDEDGSRSTQNKKLQQNKNNLLIARTTATSASRSAAKVSTLSAVRRRGQSEKHFAQSVPNFSEIKKEGMKPASGVGKNGVRTQVRSSIRPKAVNEEEKLRRPKIFRKGAAEAAELATDFSQLKSEDGVSVPLYLEQEQSGRNFNSHGTGISSDNAQLKASEESEASDDMEKEGMGEALDDTEVEAFTDAENEMPRLSQESEEWGSTGVANGESFSQLDAGSNTELPAAMASRHQTMGSILDSPGESTSPWNSRVKHRYPNEASELDASVDSPVGSPAFWNFSSLNHTESDTTQMRKKWGAAQKRAAGGNPSQNQCQQDVTKGLKRLLNFGRKNRAAESLADWISATTSEGDDDTDDGRDLANRSSEDLRKSRMGFLQSHPSGDSFNESELFTEHVQTTGTPLSFKLKEDQTTGASVKAPRSFFSLSNFRSKGK", "length": 1262, "header": "tr|F4JFS2-1|F4JFS2_ARATH Computationally mapped isoform of GPI-anchored adhesin-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JFS3-1" }, "locus": { "chromosome": "3", "start_pos": 4698606, "end_pos": 4705629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G14172.2", "url": "https://www.ensemblgenomes.org/id/AT3G14172.2" }, { "database": "Ensembl Peptide", "id": "AT3G14172.2", "url": "https://www.ensemblgenomes.org/id/AT3G14172.2" } ] } }, { "isoform_ac": "F4JFS3-1", "url": "https://www.uniprot.org/uniprotkb/F4JFS3/entry#F4JFS3-1", "sequence": { "sequence": "MRPAIPLDYAVFQLSPKRSRCELFVSTTGNTEKLASGLVKPFVAHLKVAEEQVSREVQSIRLEVESNKNAGTWFTKGTLERFVRFVSTPEVLELVSALDVEMSQLEAARKIYGEGTSDQRSSAKDSTDTTPAADVTKKELLKAIDLRLAAVRQDLATACNRASAAGFNPITVSELSQFADRFGANRLNEACTKFITLCQRRPELMSSWRVNQEEEAIRSSWESDMSIDDPSEDPSRDLATNRNQQHREYQTGMEEQSATGTSYCQHESKLKPQSSHDENDEEEEKSTVQNEPLVSQPRQLTRRLSVQERISMFENKQKENSGEKTAVAKSTELKRLSSDLSSSAGMEKVVVRRWSGASDMSIDLGNDRKDDTGDSPLCTPSSSSVSKDGSGASSKQFVGYNKKEQNGLSHAANPHRNEEECTSNNGGDWGMDEVESQNSSSTFLPKDKEVDLNVPFRTNNQVRHQGNSPDRYLEKNSKYKFHEKNPRASSDYTGNANINDDANNQMSDFISNRQNQIQFRDPQSHSLSTLQQLGGTEPIITSVQSNGVTAESPRKELMPSDRQSPLLEDRQRKTPFSGGSEQMKRPHSRRPEMGSAAVNTKPSAAINSVSDISESDTLIQVSPTEQVQRARPSKGSQELNDELKVKANELEKLFAEHMLRVPGDQSSSVRRGKPGKPSEQAVTSQLRRPVAQDLSSVQISDQKTLAMPTLTSNDEDKFKTPPTMKMVVTKDYGDTTRQNFPEISFSDNSRGKFYEQYMQKRDAKLKEDWSCRRTEKEAKLKVMQDILDRSNAEMKTKFSQSTGRRDSSARRAEKLVYFNSKLSAKKDQHPISSFQSEEDEDGSRSTQNKKLQQNKNNLLIARTTATSASRSAAKVSTLSAVRRRGQSEKHFAQSVPNFSEIKKEGMKPASGVGKNGVRTQVRSSIRPKAVNEEEKLRRPKIFRKGAAEAAELATDFSQLKSEDGVSVPLYLEQEQSGRNFNSHGTGISSDNAQLKASEESEASDDMEKEGMGEALDDTEVEAFTDAENEMPRLSQESEEWGSTGVANGESFSQLDAGSNTELPAAMASRHQTMGSILDSPGESTSPWNSRVKHRYPNEASELDASVDSPVGSPAFWNFSSLNHTESDTTQMRKKWGAAQKRAAGGNPSQNQCQQDVTKGLKRLLNFGRKNRAAESLADWISATTSEGDDDTDDGRDLANRSSEDLRKSRMGFLQSHPSGDSFNESELFTEHVQTTGTPLSFKLKEDQTTGASVKAPRSFFSLSNFRSKGK", "length": 1270, "header": "tr|F4JFS3-1|F4JFS3_ARATH Isoform 1 of GPI-anchored adhesin-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JFS3-1" }, "locus": { "chromosome": "3", "start_pos": 4698457, "end_pos": 4705828, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G14172.1", "url": "https://www.ensemblgenomes.org/id/AT3G14172.1" }, { "database": "Ensembl Peptide", "id": "AT3G14172.1", "url": "https://www.ensemblgenomes.org/id/AT3G14172.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1000, "end_pos": 1000, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1000" }, { "start_pos": 1003, "end_pos": 1003, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1003" }, { "start_pos": 1201, "end_pos": 1201, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1201" }, { "start_pos": 305, "end_pos": 305, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser305" }, { "start_pos": 337, "end_pos": 337, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser337" }, { "start_pos": 338, "end_pos": 338, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser338" }, { "start_pos": 342, "end_pos": 342, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser342" }, { "start_pos": 343, "end_pos": 343, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser343" }, { "start_pos": 468, "end_pos": 468, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser468" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, 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], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4JFS3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFS3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": 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SV=1 CANONICAL=F4J8S4-1" }, "locus": { "chromosome": "3", "start_pos": 6373525, "end_pos": 6375370, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G18530.3", "url": "https://www.ensemblgenomes.org/id/AT3G18530.3" }, { "database": "Ensembl Peptide", "id": "AT3G18530.3", "url": "https://www.ensemblgenomes.org/id/AT3G18530.3" } ] } }, { "isoform_ac": "F4J8S4-1", "url": "https://www.uniprot.org/uniprotkb/F4J8S4/entry#F4J8S4-1", "sequence": { "sequence": "MAAKALKDLKNLPVSERNIDCKKNPCAGKMNGKAEDRPPQNSVPLDHNHPTGDEIEKPEAERVIVELEYIKSKDLNNVAEVDAVLKVSIVLSWYYTMLYCDFSFSLDRSSSFHFPQGRNAAFAKVILFVVKSLKNPRSAVSKTACMTSEDIFSSYNDHIFDQLDRLLTQLLLKSSQDKRFVCEAAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACFSGCVPRLGIEGMREYGIETNSQNLRRLHGQSSWNLRQCIRKLLLSNPRRRIQRQPLGQSSANQTSHLLVHRLCFVSPMSLVRLERVLLRVHDTSPHYVPCSLYKLSRDQYFYTYWVVILFTPKNKYGMFFVPRQKVY", "length": 361, "header": "tr|F4J8S4-1|F4J8S4_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J8S4-1" }, "locus": { "chromosome": "3", "start_pos": 6373535, "end_pos": 6375723, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G18530.1", "url": "https://www.ensemblgenomes.org/id/AT3G18530.1" }, { "database": "Ensembl Peptide", "id": "AT3G18530.1", "url": "https://www.ensemblgenomes.org/id/AT3G18530.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, 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Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LSF5", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSF5" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LSF5", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSF5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G18530", "name": "", "url": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J7U3-1", "uniprot_ac": "F4J7U3", "uniprot_id": "F4J7U3_ARATH", "mass": { "chemical_mass": 15033.0, "monoisotopic_mass": 15033.0 }, "refseq": { "ac": "NP_001154645", "name": "Synaptobrevin family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154645" }, "gene_names": [], "protein_names": [ { "name": "Synaptobrevin family protein", "type": "synonym", "evidence": [ { "id": "NP_001154645", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154645" }, { "id": "F4J7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J7U3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"chromosome": "3", "start_pos": 9113875, "end_pos": 9116673, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G25013.3", "url": "https://www.ensemblgenomes.org/id/AT3G25013.3" }, { "database": "Ensembl Peptide", "id": "AT3G25013.3", "url": "https://www.ensemblgenomes.org/id/AT3G25013.3" } ] } }, { "isoform_ac": "A0A1I9LSR3-1", "url": "https://www.uniprot.org/uniprotkb/F4J7U3/entry#A0A1I9LSR3-1", "sequence": { "sequence": "MTLSTALDRSEKIELLVDKIREPLFTGTRFQSARNENDKMWFQNMKIKLIVLGIIIFLSVNSHRHHRVNSHNSHIALQVDGKLFPGIWDKDCCDNPFWRVL", "length": 101, "header": "tr|A0A1I9LSR3-1|F4J7U3_ARATH Computationally mapped isoform of Synaptobrevin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J7U3-1" }, "locus": { "chromosome": "3", "start_pos": 9113875, "end_pos": 9116236, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G25013.4", "url": "https://www.ensemblgenomes.org/id/AT3G25013.4" }, { "database": "Ensembl Peptide", "id": "AT3G25013.4", "url": "https://www.ensemblgenomes.org/id/AT3G25013.4" } ] } }, { "isoform_ac": "F4J7U3-1", "url": "https://www.uniprot.org/uniprotkb/F4J7U3/entry#F4J7U3-1", "sequence": { "sequence": "MTLSTALDRSEKIELLVDKIREPLFTGTRFQSARNENDKMWFQNMKIKLIVLGIIIFLSVNSHRHHRVNSHNSHIALQVDGKLFPFSSGKSPVQLTNPGDHTLLFQTPKGIIEICPRTPFKPRSAVFVTLIN", "length": 132, "header": "tr|F4J7U3-1|F4J7U3_ARATH Isoform 1 of Synaptobrevin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J7U3-1" }, "locus": { "chromosome": "3", "start_pos": 9113875, "end_pos": 9116188, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G25013.1", "url": "https://www.ensemblgenomes.org/id/AT3G25013.1" }, { "database": "Ensembl Peptide", "id": "AT3G25013.1", "url": "https://www.ensemblgenomes.org/id/AT3G25013.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LSR0", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSR0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LSR0", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSR0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G25013", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G25013", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4J7U3", "url": "https://www.uniprot.org/uniprotkb/F4J7U3" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4J7U3", "url": "https://www.uniprot.org/uniprotkb/F4J7U3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J7U3" }, { "id": "PF00957", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00957" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "V-SNARE coiled-coil homology", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 58, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J6J4-1", "uniprot_ac": "F4J6J4", "uniprot_id": "F4J6J4_ARATH", "mass": { "chemical_mass": 49262.0, "monoisotopic_mass": 49262.0 }, "refseq": { "ac": "NP_001154643", "name": "RNA-directed DNA polymerase (reverse transcriptase)-related family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154643" }, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase (Reverse transcriptase)-related family protein", "type": "synonym", "evidence": [ { "id": "F4J6J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6J4/entry#names_and_taxonomy" } ] }, { "name": "RNA-directed DNA polymerase (reverse transcriptase)-related family protein", "type": "synonym", "evidence": [ { "id": "NP_001154643", "database": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36037", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36037:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36037:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13966", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13966", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154643", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154643", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G24255", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G24255", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LSY1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LSY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LSY3", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LSY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LSY4", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LSY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LSY5", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LSY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6J4", "url": "https://www.uniprot.org/uniprotkb/F4J6J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6J4-1", "url": "https://www.uniprot.org/uniprotkb/F4J6J4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6J5", "url": "https://www.uniprot.org/uniprotkb/F4J6J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6J5-1", "url": "https://www.uniprot.org/uniprotkb/F4J6J5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEETHDGSLDLQEIRRRVKEFDFFPRNCREEPVESCSSDYETLVVQDFVLQFEPKVKEIVEDYGDVDLLDVDHTLVDGNLTDAYLEYLRNELQSVEAESAKVSEEIERLSQSHALDSSRLQRDLEGLLLSLDSMSSQDVEKSKENQPSSSSMEVCEVIDDDKFKMFELENQMEEKRMILKSLEDLDSLRKRFDAAEQVEDALTGLKVLEFDGNFIRLQLRTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGDIIEAADSFRQVRLHSAVLDTRSSVQWVVAKVQDKIISTTLRKDFVMSSKTIRYTFEYYDKDETIVAHIAGGIDAFLKVSDGWPLLNTPLKLASLKNSDNQSKGFSLSLISKLEELANSLDLETRQNLSGFMDAVEKILVQQTREELKSNESSQK", "length": 428, "header": "tr|F4J6J4-1|F4J6J4_ARATH Isoform 1 of RNA-directed DNA polymerase (Reverse transcriptase)-related family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6J4-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LSY1-1", "url": "https://www.uniprot.org/uniprotkb/F4J6J4/entry#A0A1I9LSY1-1", "sequence": { "sequence": "MLIYWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSLGHEVPFLTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSIQSQEDRRYNGCMTCWFGSR", "length": 532, "header": "tr|A0A1I9LSY1-1|F4J6J4_ARATH Computationally mapped isoform of RNA-directed DNA polymerase (Reverse transcriptase)-related family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6J4-1" }, "locus": { "chromosome": "3", "start_pos": 8788839, "end_pos": 8791033, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24255.5", "url": "https://www.ensemblgenomes.org/id/AT3G24255.5" }, { "database": "Ensembl Peptide", "id": "AT3G24255.5", "url": "https://www.ensemblgenomes.org/id/AT3G24255.5" } ] } }, { "isoform_ac": "A0A1I9LSY3-1", "url": "https://www.uniprot.org/uniprotkb/F4J6J4/entry#A0A1I9LSY3-1", "sequence": { "sequence": "MEEETHDGSLDLQEIRRRVKEFDFFPRNCREEPVESCSSDYETLVVQDFVLQFEPKVKEIVEDYGDVDLLDVDHTLVDGNLTDAYLEYLRNELQSVEAESAKVSEEIERLSQSHALDSSRLQRDLEGLLLSLDSMSSQDVEKSKENQPSSSSMEVCEVIDDDKFKMFELENQMEEKRMILKSLEDLDSLRKRFDAAEQVEDALTGLKVLEFDGNFIRLQLRTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGDIIEAADSFRQVRLHSAVLDTRSSVQWVVAKVQDKIISTTLRKDFVMSSKTIRYTFEYYDKDETIVAHIAGGIDAFLKVSDGWPLLNTPLKLASLKNSDNQSKGFSLSLISKLESGTSELLGFRDPAKLIRLHGCC", "length": 409, "header": "tr|A0A1I9LSY3-1|F4J6J4_ARATH Computationally mapped isoform of RNA-directed DNA polymerase (Reverse transcriptase)-related family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6J4-1" }, "locus": { "chromosome": "3", "start_pos": 8788853, "end_pos": 8793371, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24255.6", "url": "https://www.ensemblgenomes.org/id/AT3G24255.6" }, { "database": "Ensembl Peptide", "id": "AT3G24255.6", "url": "https://www.ensemblgenomes.org/id/AT3G24255.6" } ] } }, { "isoform_ac": "A0A1I9LSY4-1", "url": "https://www.uniprot.org/uniprotkb/F4J6J4/entry#A0A1I9LSY4-1", "sequence": { "sequence": "MLIYWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVPFLTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMMKYESQIMVKLSDGNLTDAYLEYLRNELQSVEAESAKVSEEIERLSQSHALDSSRLQRDLEGLLLSLDSMSSQDVEKSKENQPSSSSMEVCEVIDDDKFKMFELENQMEEKRMILKSLEDLDSLRKRFDAAEQVEDALTGLKVLEFDGNFIRLQLRTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGDIIEAADSFRQVRLHSAVLDTRSSVQWVVAKVQDKIISTTLRKDFVMSSKTIRYTFEYYDKDETIVAHIAGGIDAFLKVSDGWPLLNTPLKLASLKNSDNQSKGFSLSLISKLEELANSLDLETRQNLSGFMDAVEKILVQQTREELKSNESSQK", "length": 828, "header": "tr|A0A1I9LSY4-1|F4J6J4_ARATH Computationally mapped isoform of RNA-directed DNA polymerase (Reverse transcriptase)-related family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6J4-1" }, "locus": { "chromosome": "3", "start_pos": 8788854, "end_pos": 8793368, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24255.7", "url": "https://www.ensemblgenomes.org/id/AT3G24255.7" }, { "database": "Ensembl Peptide", "id": "AT3G24255.7", "url": "https://www.ensemblgenomes.org/id/AT3G24255.7" } ] } }, { "isoform_ac": "A0A1I9LSY5-1", "url": "https://www.uniprot.org/uniprotkb/F4J6J4/entry#A0A1I9LSY5-1", "sequence": { "sequence": "MDLLDSSRLQRDLEGLLLSLDSMSSQDVEKSKENQPSSSSMEVCEVIDDDKFKMFELENQMEEKRMILKSLEDLDSLRKRFDAAEQVEDALTGLKVLEFDGNFIRLQLRTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGDIIEAADSFRQVRLHSAVLDTRSSVQWVVAKVQDKIISTTLRKDFVMSSKTIRYTFEYYDKDETIVAHIAGGIDAFLKVSDGWPLLNTPLKLASLKNSDNQSKGFSLSLISKLEELANSLDLETRQNLSGFMDAVEKILVQQTREELKSNESSQK", "length": 316, "header": "tr|A0A1I9LSY5-1|F4J6J4_ARATH Computationally mapped isoform of RNA-directed DNA polymerase (Reverse transcriptase)-related family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6J4-1" }, "locus": { "chromosome": "3", "start_pos": 8791300, "end_pos": 8793371, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24255.8", "url": "https://www.ensemblgenomes.org/id/AT3G24255.8" }, { "database": "Ensembl Peptide", "id": "AT3G24255.8", "url": "https://www.ensemblgenomes.org/id/AT3G24255.8" } ] } }, { "isoform_ac": "F4J6J4-1", "url": "https://www.uniprot.org/uniprotkb/F4J6J4/entry#F4J6J4-1", "sequence": { "sequence": "MEEETHDGSLDLQEIRRRVKEFDFFPRNCREEPVESCSSDYETLVVQDFVLQFEPKVKEIVEDYGDVDLLDVDHTLVDGNLTDAYLEYLRNELQSVEAESAKVSEEIERLSQSHALDSSRLQRDLEGLLLSLDSMSSQDVEKSKENQPSSSSMEVCEVIDDDKFKMFELENQMEEKRMILKSLEDLDSLRKRFDAAEQVEDALTGLKVLEFDGNFIRLQLRTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGDIIEAADSFRQVRLHSAVLDTRSSVQWVVAKVQDKIISTTLRKDFVMSSKTIRYTFEYYDKDETIVAHIAGGIDAFLKVSDGWPLLNTPLKLASLKNSDNQSKGFSLSLISKLEELANSLDLETRQNLSGFMDAVEKILVQQTREELKSNESSQK", "length": 428, "header": "tr|F4J6J4-1|F4J6J4_ARATH Isoform 1 of RNA-directed DNA polymerase (Reverse transcriptase)-related family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6J4-1" }, "locus": { "chromosome": "3", "start_pos": 8788853, "end_pos": 8793371, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24255.2", "url": "https://www.ensemblgenomes.org/id/AT3G24255.2" }, { "database": "Ensembl Peptide", "id": "AT3G24255.2", "url": "https://www.ensemblgenomes.org/id/AT3G24255.2" } ] } }, { "isoform_ac": "F4J6J5-1", "url": "https://www.uniprot.org/uniprotkb/F4J6J4/entry#F4J6J5-1", "sequence": { "sequence": "MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVPFLTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMMKYESQIMVKLSDGNLTDAYLEYLRNELQSVEAESAKVSEEIERLSQSHALDSSRLQRDLEGLLLSLDSMSSQDVEKSKENQPSSSSMEVCEVIDDDKFKMFELENQMEEKRMILKSLEDLDSLRKRFDAAEQVEDALTGLKVLEFDGNFIRLQLRTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGDIIEAADSFRQVRLHSAVLDTRSSVQWVVAKVQDKIISTTLRKDFVMSSKTIRYTFEYYDKDETIVAHIAGGIDAFLKVSDGWPLLNTPLKLASLKNSDNQSKGFSLSLISKLEELANSLDLETRQNLSGFMDAVEKILVQQTREELKSNESSQK", "length": 746, "header": "tr|F4J6J5-1|F4J6J5_ARATH Computationally mapped isoform of RNA-directed DNA polymerase (Reverse transcriptase)-related family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6J4-1" }, "locus": { "chromosome": "3", "start_pos": 8788854, "end_pos": 8793368, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24255.1", "url": "https://www.ensemblgenomes.org/id/AT3G24255.1" }, { "database": "Ensembl Peptide", "id": "AT3G24255.1", "url": "https://www.ensemblgenomes.org/id/AT3G24255.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LSY1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LSY1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LSY1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G24255", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24255", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "F4J6J4", "url": "https://www.uniprot.org/uniprotkb/F4J6J4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4J6J4", "url": "https://www.uniprot.org/uniprotkb/F4J6J4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J6J4", "url": "https://www.uniprot.org/uniprotkb/F4J6J4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J6J4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 428, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J6J4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J6J4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 373, "end_pos": 375 }, { "start_pos": 400, "end_pos": 402 }, { "start_pos": 423, "end_pos": 425 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JFF2-1", "uniprot_ac": "F4JFF2", "uniprot_id": "F4JFF2_ARATH", "mass": { "chemical_mass": 144859.0, "monoisotopic_mass": 144859.0 }, "refseq": { "ac": "NP_001327687", "name": "nucleotidyltransferase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327687" }, "gene_names": [ { "name": "NTP8", "type": "recommended", "evidence": [ { "id": "F4JFF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JFF2" } ] } ], "protein_names": [ { "name": "Nucleotidyltransferase", "type": "synonym", "evidence": [ { "id": "F4JFF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JFF2/entry#names_and_taxonomy" } ] }, { "name": "nucleotidyltransferase", "type": "synonym", "evidence": [ { "id": "NP_001327687", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327687" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JFF2", "url": "https://www.uniprot.org/uniprotkb/F4JFF2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "NTP8", "url": "https://www.uniprot.org/uniprotkb/F4JFF2", "locus": {} } ], "crossref": [ { "id": "AT3G61690", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G61690", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd05402", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05402", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "825342", "url": "https://www.ncbi.nlm.nih.gov/gene/825342", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G61690", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G61690", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F4JFF2", "url": "https://oglcnac.org/atlas/detail/F4JFF2", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "PVNIAVQ", "url": "https://omabrowser.org/oma/group/PVNIAVQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45979", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45979", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45979:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45979:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22600", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26180", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26180", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001327687", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001327687", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G61690", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G61690", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "A0A1I9LT31", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1I9LT31-1", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JFF2", "url": "https://www.uniprot.org/uniprotkb/F4JFF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JFF2-1", "url": "https://www.uniprot.org/uniprotkb/F4JFF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEHESWAASPPSPSGLHPNGLLPGKAASVTRPLDAERWAKAEDRTAKLIACIQPNPPSEDRRNAVASYVRRLIMECFPQVQIFMFGSVPLKTYLPDGDIDLTAFSANQNLKDSWANLVRDMLEKEEKNENAEFHVKEVQYIQAEVKIIKCLVENIVVDISFNQIGGLCTLCFLEEVDHYINQNHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFYLFNNSFSGPLEVLYRFLEFFSKFDWQNFCLSLWGPVPVSSLPDVTAEPPRRDVGELRVSEAFYRACSRVYAVNIAPQEIQGQPFVSKHFNVIDPLRENNNLGRSVSKGNFFRIRSAFTLGAKKLTRLLECPKENLIHEVNQFFMNTWERHGSGRRPDAPGNDLWLSRLGDPEPYHQAENVSNSLNNKRNQNAIRLGGVHGARSMPSQQNNCGTEITSRVTYQTQKSRGNSYQPAQEVNSNQSALNDKLQQTVKPETLVNNFHGRHIFARTRSSPELTETHGEALLQSRRSRAAPDAGKRQTNSTRVDSIRKKSLESETLSSGVRYSADSSSVRHTPSPQSPDSTADMSSAVNSYYDEVGSVSVNEDFSVAGEQEEQDLVNSMTSVTGQGFNGHFPFPFNFSTGHLPFPITPSILASMGYGQRNMPGIVPSNLPFIEAPWSTNLQFPQNFVSSPFTHYFPSGAHPISEKPSKTGSDDMGSSEVNVDESDNDLWHEPERGTHSFGLENGGYGMHQADDKHQSSFAEHSFVPSRRKNRLTRGDDLENSHSPVRGSSQIQSEERTVGSRSVSGASSVRSRTSSESSWDGSTTRGSKPAKDRRNRKVVSGAASTLYGKGKSVPEHSIQIDDDNREWIPVSSNEIIDRDLGPRPTVPSFQVQRHQIHGHELAQASGSESTVSLAPFILGHGMQQNEVDNSGYTFYPTGPPVPIVAMLPMYNYQAGGNATSDALASHHSVDEGVENHEPCKSFDSSRGLDQSEIVVSSHSTRMGSSAEQVERKNDILNGDFISHWQNLQYGRSCQNSQHPPVLYPAPVVVPPAYLQGRLPWDGPGRPLAYTNAVNQLMTYGPRLVPVAPVQPVSTRPPNIYPRYANETPRYRSGTGTYFPNPKISPREQRPTSGMRRGNYGHDRTDHHSDREGNWNAGSKTRGSGRNHNNRNQADNKPISRQDRSDRHWGSSYRHESSSYSAHHSQNGPIRSNTSQDASGNIAYGMYRLPPGMKQNSVTSSEGHNVPSVMMFYPYGHNNVYNSPSEHNEYGSLGPGGEAPHLNDEDQPRFRGAAASAHMSSPDDPSSPHFPRGK", "length": 1303, "header": "tr|F4JFF2-1|F4JFF2_ARATH Isoform 1 of Nucleotidyltransferase OS=Arabidopsis thaliana OX=3702 GN=NTP8 PE=1 SV=1 CANONICAL=F4JFF2-1" }, "isoforms": [ { "isoform_ac": "A0A1I9LT31-1", "url": "https://www.uniprot.org/uniprotkb/F4JFF2/entry#A0A1I9LT31-1", "sequence": { "sequence": 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"length": 1252, "header": "tr|A0A1I9LT31-1|F4JFF2_ARATH Computationally mapped isoform of Nucleotidyltransferase OS=Arabidopsis thaliana OX=3702 GN=NTP8 PE=1 SV=1 CANONICAL=F4JFF2-1" }, "locus": { "chromosome": "3", "start_pos": 22827539, "end_pos": 22834108, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G61690.2", "url": "https://www.ensemblgenomes.org/id/AT3G61690.2" }, { "database": "Ensembl Peptide", "id": "AT3G61690.2", "url": "https://www.ensemblgenomes.org/id/AT3G61690.2" } ] } }, { "isoform_ac": "F4JFF2-1", "url": "https://www.uniprot.org/uniprotkb/F4JFF2/entry#F4JFF2-1", "sequence": { "sequence": "MGEHESWAASPPSPSGLHPNGLLPGKAASVTRPLDAERWAKAEDRTAKLIACIQPNPPSEDRRNAVASYVRRLIMECFPQVQIFMFGSVPLKTYLPDGDIDLTAFSANQNLKDSWANLVRDMLEKEEKNENAEFHVKEVQYIQAEVKIIKCLVENIVVDISFNQIGGLCTLCFLEEVDHYINQNHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFYLFNNSFSGPLEVLYRFLEFFSKFDWQNFCLSLWGPVPVSSLPDVTAEPPRRDVGELRVSEAFYRACSRVYAVNIAPQEIQGQPFVSKHFNVIDPLRENNNLGRSVSKGNFFRIRSAFTLGAKKLTRLLECPKENLIHEVNQFFMNTWERHGSGRRPDAPGNDLWLSRLGDPEPYHQAENVSNSLNNKRNQNAIRLGGVHGARSMPSQQNNCGTEITSRVTYQTQKSRGNSYQPAQEVNSNQSALNDKLQQTVKPETLVNNFHGRHIFARTRSSPELTETHGEALLQSRRSRAAPDAGKRQTNSTRVDSIRKKSLESETLSSGVRYSADSSSVRHTPSPQSPDSTADMSSAVNSYYDEVGSVSVNEDFSVAGEQEEQDLVNSMTSVTGQGFNGHFPFPFNFSTGHLPFPITPSILASMGYGQRNMPGIVPSNLPFIEAPWSTNLQFPQNFVSSPFTHYFPSGAHPISEKPSKTGSDDMGSSEVNVDESDNDLWHEPERGTHSFGLENGGYGMHQADDKHQSSFAEHSFVPSRRKNRLTRGDDLENSHSPVRGSSQIQSEERTVGSRSVSGASSVRSRTSSESSWDGSTTRGSKPAKDRRNRKVVSGAASTLYGKGKSVPEHSIQIDDDNREWIPVSSNEIIDRDLGPRPTVPSFQVQRHQIHGHELAQASGSESTVSLAPFILGHGMQQNEVDNSGYTFYPTGPPVPIVAMLPMYNYQAGGNATSDALASHHSVDEGVENHEPCKSFDSSRGLDQSEIVVSSHSTRMGSSAEQVERKNDILNGDFISHWQNLQYGRSCQNSQHPPVLYPAPVVVPPAYLQGRLPWDGPGRPLAYTNAVNQLMTYGPRLVPVAPVQPVSTRPPNIYPRYANETPRYRSGTGTYFPNPKISPREQRPTSGMRRGNYGHDRTDHHSDREGNWNAGSKTRGSGRNHNNRNQADNKPISRQDRSDRHWGSSYRHESSSYSAHHSQNGPIRSNTSQDASGNIAYGMYRLPPGMKQNSVTSSEGHNVPSVMMFYPYGHNNVYNSPSEHNEYGSLGPGGEAPHLNDEDQPRFRGAAASAHMSSPDDPSSPHFPRGK", "length": 1303, "header": "tr|F4JFF2-1|F4JFF2_ARATH Isoform 1 of Nucleotidyltransferase OS=Arabidopsis thaliana OX=3702 GN=NTP8 PE=1 SV=1 CANONICAL=F4JFF2-1" }, "locus": { "chromosome": "3", "start_pos": 22827884, "end_pos": 22834108, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G61690.1", "url": "https://www.ensemblgenomes.org/id/AT3G61690.1" }, { "database": "Ensembl Peptide", "id": "AT3G61690.1", "url": "https://www.ensemblgenomes.org/id/AT3G61690.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 636, "start_aa": "Thr", "end_pos": 636, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr636", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 861, "start_aa": "Ser", "end_pos": 861, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser861", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JFF2", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/F4JFF2" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 875, "start_aa": "Thr", "end_pos": 875, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr875", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JFF2", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F4JFF2" } ] } ], "phosphorylation": [ { "start_pos": 1289, "end_pos": 1289, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1289" }, { "start_pos": 1290, "end_pos": 1290, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1290" }, { "start_pos": 1295, "end_pos": 1295, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser1295" }, { "start_pos": 1296, "end_pos": 1296, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1296" }, { "start_pos": 15, "end_pos": 15, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser15" }, { "start_pos": 429, "end_pos": 429, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser429" }, { "start_pos": 456, "end_pos": 456, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser456" }, { "start_pos": 496, "end_pos": 496, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr496" }, { "start_pos": 498, "end_pos": 498, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": 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"id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser498" }, { "start_pos": 499, "end_pos": 499, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser499" }, { "start_pos": 503, "end_pos": 503, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": 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"https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser547" }, { "start_pos": 552, "end_pos": 552, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser552" }, { "start_pos": 557, "end_pos": 557, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser557" }, { "start_pos": 771, "end_pos": 771, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser771" }, { "start_pos": 773, "end_pos": 773, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFF2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFF2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { 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(ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JBU0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JBU0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LT53", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT53" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LT81", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT81" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LT81", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LT81" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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CANONICAL=F4J6V5-1" }, "locus": { "chromosome": "3", "start_pos": 19386983, "end_pos": 19388944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52270.2", "url": "https://www.ensemblgenomes.org/id/AT3G52270.2" }, { "database": "Ensembl Peptide", "id": "AT3G52270.2", "url": "https://www.ensemblgenomes.org/id/AT3G52270.2" } ] } }, { "isoform_ac": "F4J6V5-1", "url": "https://www.uniprot.org/uniprotkb/F4J6V5/entry#F4J6V5-1", "sequence": { "sequence": "MSLREMEDVKVEMKVRKNENEALETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPLAHEDEGTQFVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIESYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMIIPTAAPEKKKLTNRTSEMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLKDLCIYNNKGSNQGTYELKPEYKKATQE", "length": 269, "header": "tr|F4J6V5-1|F4J6V5_ARATH Isoform 1 of Transcription initiation factor IIF, beta subunit OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J6V5-1" }, "locus": { "chromosome": "3", "start_pos": 19386983, "end_pos": 19388944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52270.1", "url": "https://www.ensemblgenomes.org/id/AT3G52270.1" }, { "database": "Ensembl Peptide", "id": "AT3G52270.1", "url": "https://www.ensemblgenomes.org/id/AT3G52270.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 154, "end_pos": 154, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J6V5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J6V5" } ], "site_lbl": "Tyr154" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "A0A1I9LTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A1I9LTJ0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.", "journal": "Mol. 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"start_pos": 17359991, "end_pos": 17362118, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47160.3", "url": "https://www.ensemblgenomes.org/id/AT3G47160.3" }, { "database": "Ensembl Peptide", "id": "AT3G47160.3", "url": "https://www.ensemblgenomes.org/id/AT3G47160.3" } ] } }, { "isoform_ac": "F4JAD0-1", "url": "https://www.uniprot.org/uniprotkb/F4JAD0/entry#F4JAD0-1", "sequence": { "sequence": "MAKVSFKDSLKALEADIQHANTVLSNELGDEVIFRALDYPREKDGARVQMRLSYTPAAQFLLFLVQWTDCHLAGTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAVIFPSLLQLERGITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCIKCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPLVVPDQVFASSPYDCHVK", "length": 257, "header": "tr|F4JAD0-1|F4JAD0_ARATH Isoform 1 of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JAD0-1" }, "locus": { "chromosome": "3", "start_pos": 17359991, "end_pos": 17362118, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47160.2", "url": "https://www.ensemblgenomes.org/id/AT3G47160.2" }, { "database": "Ensembl Peptide", "id": "AT3G47160.2", "url": "https://www.ensemblgenomes.org/id/AT3G47160.2" } ] } }, { "isoform_ac": "Q9SD57-1", "url": "https://www.uniprot.org/uniprotkb/F4JAD0/entry#Q9SD57-1", "sequence": { "sequence": "MAKVSFKDSLKALEADIQHANTVALDYPREKDGARVQMRLSYTPAAQFLLFLVQWTDCHLAGTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAVIFPSLLQLERGITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCIKCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPLVVPDQVFASSPYDCHVK", "length": 245, "header": "tr|Q9SD57-1|F4JAD0_ARATH Computationally mapped isoform of RING/U-box superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JAD0-1" }, "locus": { "chromosome": "3", "start_pos": 17359758, "end_pos": 17362240, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47160.1", "url": "https://www.ensemblgenomes.org/id/AT3G47160.1" }, { "database": "Ensembl Peptide", "id": "AT3G47160.1", "url": "https://www.ensemblgenomes.org/id/AT3G47160.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 205, "end_pos": 205, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SD57", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SD57" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser205" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9SD57", "url": "https://www.uniprot.org/uniprotkb/Q9SD57" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9SD57", "url": "https://www.uniprot.org/uniprotkb/Q9SD57" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G47160", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G47160", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F4JAD0", "url": "https://www.uniprot.org/uniprotkb/F4JAD0" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F4JAD0", "url": "https://www.uniprot.org/uniprotkb/F4JAD0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", 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"MHIGQAAAKEGESQMIVMMGNNLSLTSIILNGDPSIEHKGKLPCLDEQVKISQFYHCEGLLLCILKDDSRFVVCNPYLEQTRWIEPRYSHRPHGWDRFSYALGYVNTDSCCYYKLLGLIDYYYNAHEKQFFWYGIYDFDSDLWTTLDVTPHWRIAFCNRGVSLKGSTYWCAAERNVDVDEVLADRLICFDFTSERFGPLLPLPFSGGHIDCMTLSCVREEKLAVLLQHDESNPYELDLWITTKIETGEEKKVAFGFDGRNRERVIVIGEAGYLRGLDLVGDFGDQECRTDLCSYVPSLVQIKQPEGGESKQQSDLEKCRYDENMLRLVSL", "length": 330, "header": "tr|F4J466-1|F4J466_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J466-1" }, "isoforms": [ { "isoform_ac": "F4J466-1", "url": "https://www.uniprot.org/uniprotkb/F4J466/entry#F4J466-1", "sequence": { "sequence": "MHIGQAAAKEGESQMIVMMGNNLSLTSIILNGDPSIEHKGKLPCLDEQVKISQFYHCEGLLLCILKDDSRFVVCNPYLEQTRWIEPRYSHRPHGWDRFSYALGYVNTDSCCYYKLLGLIDYYYNAHEKQFFWYGIYDFDSDLWTTLDVTPHWRIAFCNRGVSLKGSTYWCAAERNVDVDEVLADRLICFDFTSERFGPLLPLPFSGGHIDCMTLSCVREEKLAVLLQHDESNPYELDLWITTKIETGEEKKVAFGFDGRNRERVIVIGEAGYLRGLDLVGDFGDQECRTDLCSYVPSLVQIKQPEGGESKQQSDLEKCRYDENMLRLVSL", "length": 330, "header": "tr|F4J466-1|F4J466_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J466-1" }, "locus": { "chromosome": "3", "start_pos": 8527239, "end_pos": 8528317, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G23685.1", "url": "https://www.ensemblgenomes.org/id/AT3G23685.1" }, { "database": "Ensembl Peptide", "id": "AT3G23685.1", "url": "https://www.ensemblgenomes.org/id/AT3G23685.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker 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"MKLNHQPHYSGIQQEGSVRDYRERFEALCLRSVTLPGQGFEEMFLQGLQPSLQTAVRELKPNGINSYQSRQAELMSLTLVQAKLDVVKKKKGVINELEELEQDSYTLRQGMEQLVIDLTRNKGMRFYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSFSHNQQWITLCAEHEELEQVTTKVKMKSENEQEDIEEQRNNDGEMLVVSYLEDKVTLKGESKVTCGGIAKEIQGGHDTKENDDEKSFFGQPGVKHSEVVAGSTRNMSTKSEKDQTRSVCVKEPFEVVGLYHPFKTVVSRLMIEFGKEVTQMHVEEMVDKWESSVKKKVAAVGSTEVRTLVQGIHFLPP", "length": 421, "header": "tr|F4J487-1|F4J487_ARATH Isoform 1 of Eukaryotic aspartyl protease family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J487-1" }, "isoforms": [ { "isoform_ac": "F4J487-1", "url": "https://www.uniprot.org/uniprotkb/F4J487/entry#F4J487-1", "sequence": { "sequence": 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reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J487", "url": "https://www.uniprot.org/uniprotkb/F4J487" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G29750", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G29750", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F4J487", "url": "https://www.uniprot.org/uniprotkb/F4J487" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "F4J487", "url": "https://www.uniprot.org/uniprotkb/F4J487" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 338, "end_pos": 340, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J487-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 421, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J487-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J487" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4A0-1", "url": "https://www.uniprot.org/uniprotkb/F4J4A0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGYEKFTWVIKNFSSLQSKYINSDKFVIGGCKWFLKGYQNANYLSLFLMVATSKTLPCGWRRYTRFRLTVVNQLSDELSQQRETETWFDQNVVLSGNRHMISLTKLNAKKGGFLVNNEVKIVVEVDVLQVIGKLDVSEGSQEVTQPLKRIRLNDDGVSVKQSIDVNGFQVLPSQVESVKRIFERHPNMALEFRAKNQHVRTSCMNVLLSLIDTLCQSLQDISIDDLGQAEKALRYLKDSDFKVDWLERKLEEVKEKKMEEQIGKSRMQELEEELKIFKQKCSDIEAQLEKEKQKCSDIEALLEKEKAKSLAAARAPPLTLDDVV", "length": 324, "header": "sp|F4J4A0-1|MCC13_ARATH Isoform 1 of MATH domain and coiled-coil domain-containing protein At3g44790 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J4A0-1" }, "isoforms": [ { "isoform_ac": "F4J4A0-1", "url": "https://www.uniprot.org/uniprotkb/F4J4A0/entry#F4J4A0-1", "sequence": { "sequence": 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"id": "IPR050804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G44805", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G44805", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR46236", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46236", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46236:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46236:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_680095", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680095", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G44805", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G44805", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J4A2", "url": "https://www.uniprot.org/uniprotkb/F4J4A2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4A2-1", "url": "https://www.uniprot.org/uniprotkb/F4J4A2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISLAKLNVRKGGFLVKNEVKIVVEVDVLQVIGNLDVSEVSSHLHKETSSVDVNGFLVLPSQVESAKLIFERHSDMALEFRAKNQYVRTSCMNVLLSLIDTLCQSLQDFSIDDLGQAERALTYLKDSDFKVDWLERKLEEVKEKKIEEQIGKTRMQELEEEFESRELARILLVASFLMTMQTDYCQQRLSYKEKLSCHGLEEMLLLSELNAKEGGFLVNNEVKIIAEVDVLQVIGKLDVSENTQPRKG", "length": 248, "header": "tr|F4J4A2-1|F4J4A2_ARATH Isoform 1 of TRAF-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J4A2-1" }, "isoforms": [ { "isoform_ac": "F4J4A2-1", "url": "https://www.uniprot.org/uniprotkb/F4J4A2/entry#F4J4A2-1", "sequence": { "sequence": "MISLAKLNVRKGGFLVKNEVKIVVEVDVLQVIGNLDVSEVSSHLHKETSSVDVNGFLVLPSQVESAKLIFERHSDMALEFRAKNQYVRTSCMNVLLSLIDTLCQSLQDFSIDDLGQAERALTYLKDSDFKVDWLERKLEEVKEKKIEEQIGKTRMQELEEEFESRELARILLVASFLMTMQTDYCQQRLSYKEKLSCHGLEEMLLLSELNAKEGGFLVNNEVKIIAEVDVLQVIGKLDVSENTQPRKG", "length": 248, "header": "tr|F4J4A2-1|F4J4A2_ARATH Isoform 1 of TRAF-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J4A2-1" }, "locus": { "chromosome": "3", "start_pos": 16350395, "end_pos": 16351437, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G44805.1", "url": "https://www.ensemblgenomes.org/id/AT3G44805.1" }, { "database": "Ensembl Peptide", "id": "AT3G44805.1", "url": "https://www.ensemblgenomes.org/id/AT3G44805.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J4A2", "url": "https://www.uniprot.org/uniprotkb/F4J4A2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen 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"MCILCVIQKWSRQVATMLPWFVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLVTLFWYEVLMPQLSTWRVRRNAQLRERERLEAIELQKLKKNATRRCRNCSNPYRDQNPGGGKFMCSYCGHVSKRPVLDMALSSGLEISGSGILKDLVGRGGKMLNGKGWSENGYLHRQEWSDNSTWTSGSSYWRNNSGDTFEGDENCLVEKSYSGGVVFACRLLTSFFMSILWLWRKIFRFSSSVGDSSLDPEQRRMLARQGENGTSSHESRVEKARRKAEEKRQARLEKEHSEEEERKQREEVARLVEERRRLRDEILEAEKCSKFSVAAKEKDTKEAEKKRQERRKERDRASSKSNSDGEEVDKRTRKETEQKRGLNKSDHLEHERHAPDNLRGPNMERRHGHGLENNVTSNGTKSGGRYFDRMKSTTFSSSKAFTDSRIFGRGVNTSATFARENKPTGSADNSHTYAHSSHINPPDFVAMKSVPNEEERNTNNPVVSEPKPSREPRKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQISQVPSQVSSIRTFDNSISFGLPSPFTIPVYSSGSTTSSLGFSPPTEFVFPQPGEDERFEDPCYVPDPISLLGPVSESLDLRAAGYETGIGQVKYHAMKNTPSCEANKPSPIESPLSRSRAADEKQANDGSWQMWKSPLGQNGLGLVGGSANWVLPSEISRSIEESDMHHAPQHRTESLFSKEDCQLHQGAYSQRKDYLEHDQRSGVFSPITGPTTTDPWSQKMFFPALSGIESPFSITTQTKSVLNNAAGYRSPTGSGPDNPFEHPSPNHWLKKVKSSGDGTGKQVLAAGEVENHQKDVESFW", "length": 842, "header": "tr|F4J4H2-1|F4J4H2_ARATH Isoform 1 of Stress response NST1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J4H2-1" }, "isoforms": [ { "isoform_ac": "F4J4H2-1", "url": "https://www.uniprot.org/uniprotkb/F4J4H2/entry#F4J4H2-1", "sequence": { "sequence": 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CANONICAL=F4J4H2-1" }, "locus": { "chromosome": "3", "start_pos": 19158926, "end_pos": 19162571, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G51650.4", "url": "https://www.ensemblgenomes.org/id/AT3G51650.4" }, { "database": "Ensembl Peptide", "id": "AT3G51650.4", "url": "https://www.ensemblgenomes.org/id/AT3G51650.4" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 323, "end_pos": 323, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J4H2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J4H2" } ], "site_lbl": "Ser323" }, { "start_pos": 354, "end_pos": 354, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J4H2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J4H2" }, { "database": "PubMed", "id": "23111157", "url": 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Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J4H2", "url": "https://www.uniprot.org/uniprotkb/F4J4H2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of 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"common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "ECAP", "url": "https://www.uniprot.org/uniprotkb/F4J4N6", "locus": {} } ], "crossref": [ { "id": "F4J4N6", "url": "https://alphafold.ebi.ac.uk/entry/F4J4N6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G58110", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G58110", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "824980", "url": "https://www.ncbi.nlm.nih.gov/gene/824980", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G58110", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G58110", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RLIWAQK", "url": "https://omabrowser.org/oma/group/RLIWAQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4J4N6", "url": 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"categories": [ "Protein" ] }, { "id": "F4J4N6-1", "url": "https://www.uniprot.org/uniprotkb/F4J4N6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9M2K5", "url": "https://www.uniprot.org/uniprotkb/Q9M2K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9M2K5-1", "url": "https://www.uniprot.org/uniprotkb/Q9M2K5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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}, "locus": { "chromosome": "3", "start_pos": 21516745, "end_pos": 21519862, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G58110.2", "url": "https://www.ensemblgenomes.org/id/AT3G58110.2" }, { "database": "Ensembl Peptide", "id": "AT3G58110.2", "url": "https://www.ensemblgenomes.org/id/AT3G58110.2" } ] } }, { "isoform_ac": "Q9M2K5-1", "url": "https://www.uniprot.org/uniprotkb/F4J4N6/entry#Q9M2K5-1", "sequence": { "sequence": "MASSPPSDPTDRDAETLSQNPSLIEKPSVVEQGSLSVENVAEKALNLESTQDEETQNLQDLEESDGRDQQLEASLEESRNEEDDMDTTQAVSSSYYRRGGGPKRKKGNQKKRKQLEKSKEKLEVLLKTLKPIAFAPCKTLDFARHEKLLKTLGLWDFVHLDFDQNIREDLVANLVAYYNSERRCSYVNGARINVSRPDLARALKLPMKKDFVVTEEERELLENDESVRFIDEIVSTCVLLQRDDMWIMPVEIVEWTRDIKQKHLEKLDWPKLLWFMVEKELKAEPPLGDCFFASHLQLLIKSQKEDLLKEKCKADDEEDDDDDDDDVKEVDFLVKSPKEDCLEVKEEDVGAADSRKDDGAVDLKEDKYVEEHMLELNLGQETVSEMVSGEERGPVEGQPMDVEENKKEEDERWAWNGDSHAGSHFLRRCNHSSAREGDEDNHIEGSMEMGEDEPIEDVEEEETEEDTEKHEGGFPFFPNGDSLQGVGQGNLMLGDASPLGYNSGLQIHGNSIGGDFLASRGEMHMAMGSGSSSLFGNGNNKREIEHENGITYHSHNPINKRLRTEEPSWDEKPPPVDMCLDQMAYWAEKARLSFAEKDREREQSVINQQYLMNELQSKTAMIQELERTKFEEQQRKDIMIYKLESELRMMTSVVEGYRKALKITQKASREHRKRCPLRDDKQVYMDVKGSGGLVLSTTEIEKLRLKQEEEDRMQRVLAKRQIDDFEHNWLNKFEEHMEAVELLNERLIENEDEVKILRETLSESKNIETSEVAAAMEETATEET", "length": 784, "header": "tr|Q9M2K5-1|Q9M2K5_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=ECAP PE=1 SV=1 CANONICAL=F4J4N6-1" }, "locus": { "chromosome": "3", 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"kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J4R5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J4R5" } ], "site_lbl": "Thr124" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe 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Classification" ] }, { "id": "ath:AT3G04710", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G04710", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR46224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46224:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46224:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07939", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07939", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25575", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25575", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001030635", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001030635", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G04710", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G04710", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J4V1", "url": "https://www.uniprot.org/uniprotkb/F4J4V1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4V1-1", "url": "https://www.uniprot.org/uniprotkb/F4J4V1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4V4", "url": "https://www.uniprot.org/uniprotkb/F4J4V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4V4-1", "url": "https://www.uniprot.org/uniprotkb/F4J4V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SR03", "url": "https://www.uniprot.org/uniprotkb/Q9SR03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SR03-1", "url": "https://www.uniprot.org/uniprotkb/Q9SR03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPDASTALAAREKVQQILNAACTGNLEFLKNVAKQLDEGKDLTKTVESIKDANKRGALHFAAREGQTEICRYLLEELKLNADAKDETGDTPLVHAARQGQIETVKYLLEQGADPNIASELGATALHHAAGTGEIELLKELLSRGVPVDSESESGTPLIWAAGHDQKNAVEVLLEHNANPNAETEDNITPLLSAVAAGSLSCLELLVKAGAKANVFAGGATPLHIAADIGNLELINCLLKAGADPNQKDEGNRPLEVAAARDNRKVVEILFPLTTKPETVSDWTVDGILAHMESNKEQEENSNKAKSQETGIKKDLPVVSPEAKAKAAEAKARGQDAFHRKDFQMAIDAYTQAIDFDPTDHTLFSNRSLCWLRLGQAEHALSDAKACRELNPDWPKGCFREGAALRLLQRFDEAANAFYEGVLLSPESKELIDAFREAVDAGRKFHGKGEVKAKS", "length": 455, "header": "tr|F4J4V4-1|F4J4V4_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=TPR10 PE=1 SV=1 CANONICAL=F4J4V4-1" }, "isoforms": [ { "isoform_ac": "F4J4V1-1", "url": "https://www.uniprot.org/uniprotkb/F4J4V4/entry#F4J4V1-1", "sequence": { "sequence": "MVRRREGLTLPIIKPALPEVRSAATTPVASQKPKHRLSKQLSMCETPRDVAWERRRRQMIMIQEKKLLHKGASDNLCIQANLTDEDLNELKGSIELGFGFNEEAGQKLCNTLPALDLYFAVNRQLSPLPSPSSSRSSSASASTFSYSIPCSPKKTDSDSVKILCPGDDPQQMKQRLRHWAQAVACSISDNQTDRHKQTPVSTNGTNSDIQNPLQVSRTKGLVSAMAPDASTALAAREKVQQILNAACTGNLEFLKNVAKQLDEGKDLTKTVESIKDANKRGALHFAAREGQTEICRYLLEELKLNADAKDETGDTPLVHAARQGQIETVKYLLEQGADPNIASELGATALHHAAGTGEIELLKELLSRGVPVDSESESGTPLIWAAGHDQKNAVEVLLEHNANPNAETEDNITPLLSAVAAGSLSCLELLVKAGAKANVFAGGATPLHIAADIGNLELINCLLKAGADPNQKDEEGNRPLEVAAARDNRKVVEILFPLTTKPETVSDWTVDGILAHMESNKEQEENSNKAKSQETGIKKDLPVVSPEAKAKAAEAKARGQDAFHRKDFQMAIDAYTQAIDFDPTDHTLFSNRSLCWLRLGQAEHALSDAKACRELNPDWPKGCFREGAALRLLQRFDEAANAFYEGVLLSPESKELIDAFREAVDAGRKFHGKGEVKAKS", "length": 680, "header": "tr|F4J4V1-1|F4J4V4_ARATH Computationally mapped isoform of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=TPR10 PE=1 SV=1 CANONICAL=F4J4V4-1" }, "locus": { "chromosome": "3", "start_pos": 1276668, "end_pos": 1281118, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G04710.3", "url": "https://www.ensemblgenomes.org/id/AT3G04710.3" }, { "database": "Ensembl Peptide", "id": "AT3G04710.3", "url": "https://www.ensemblgenomes.org/id/AT3G04710.3" } ] } }, { "isoform_ac": "F4J4V4-1", "url": "https://www.uniprot.org/uniprotkb/F4J4V4/entry#F4J4V4-1", "sequence": { "sequence": "MAPDASTALAAREKVQQILNAACTGNLEFLKNVAKQLDEGKDLTKTVESIKDANKRGALHFAAREGQTEICRYLLEELKLNADAKDETGDTPLVHAARQGQIETVKYLLEQGADPNIASELGATALHHAAGTGEIELLKELLSRGVPVDSESESGTPLIWAAGHDQKNAVEVLLEHNANPNAETEDNITPLLSAVAAGSLSCLELLVKAGAKANVFAGGATPLHIAADIGNLELINCLLKAGADPNQKDEGNRPLEVAAARDNRKVVEILFPLTTKPETVSDWTVDGILAHMESNKEQEENSNKAKSQETGIKKDLPVVSPEAKAKAAEAKARGQDAFHRKDFQMAIDAYTQAIDFDPTDHTLFSNRSLCWLRLGQAEHALSDAKACRELNPDWPKGCFREGAALRLLQRFDEAANAFYEGVLLSPESKELIDAFREAVDAGRKFHGKGEVKAKS", "length": 455, "header": "tr|F4J4V4-1|F4J4V4_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=TPR10 PE=1 SV=1 CANONICAL=F4J4V4-1" }, "locus": { "chromosome": "3", "start_pos": 1278084, "end_pos": 1281118, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G04710.2", "url": "https://www.ensemblgenomes.org/id/AT3G04710.2" }, { "database": "Ensembl Peptide", "id": "AT3G04710.2", "url": "https://www.ensemblgenomes.org/id/AT3G04710.2" } ] } }, { "isoform_ac": "Q9SR03-1", "url": "https://www.uniprot.org/uniprotkb/F4J4V4/entry#Q9SR03-1", "sequence": { "sequence": "MAPDASTALAAREKVQQILNAACTGNLEFLKNVAKQLDEGKDLTKTVESIKDANKRGALHFAAREGQTEICRYLLEELKLNADAKDETGDTPLVHAARQGQIETVKYLLEQGADPNIASELGATALHHAAGTGEIELLKELLSRGVPVDSESESGTPLIWAAGHDQKNAVEVLLEHNANPNAETEDNITPLLSAVAAGSLSCLELLVKAGAKANVFAGGATPLHIAADIGNLELINCLLKAGADPNQKDEEGNRPLEVAAARDNRKVVEILFPLTTKPETVSDWTVDGILAHMESNKEQEENSNKAKSQETGIKKDLPVVSPEAKAKAAEAKARGQDAFHRKDFQMAIDAYTQAIDFDPTDHTLFSNRSLCWLRLGQAEHALSDAKACRELNPDWPKGCFREGAALRLLQRFDEAANAFYEGVLLSPESKELIDAFREAVDAGRKFHGKGEVKAKS", "length": 456, "header": "tr|Q9SR03-1|F4J4V4_ARATH Computationally mapped isoform of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN=TPR10 PE=1 SV=1 CANONICAL=F4J4V4-1" }, "locus": { "chromosome": "3", "start_pos": 1278028, "end_pos": 1281170, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G04710.1", "url": "https://www.ensemblgenomes.org/id/AT3G04710.1" }, { "database": "Ensembl Peptide", "id": "AT3G04710.1", "url": "https://www.ensemblgenomes.org/id/AT3G04710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9SR03", "url": "https://www.uniprot.org/uniprotkb/Q9SR03" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9SR03", "url": "https://www.uniprot.org/uniprotkb/Q9SR03" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G04710", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G04710", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J4V4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 455, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J4V4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J4V4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J4V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J4V4" }, { "id": "PF25575", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25575" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serine/threonine-protein kinase BSK1-like TPR repeats", "eco_id": "ECO_0000259", "start_pos": 325, "end_pos": 398, "start_aa": "Ala", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 187, "end_pos": 189 }, { "start_pos": 366, "end_pos": 368 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J4Y8-1", "uniprot_ac": "F4J4Y8", "uniprot_id": "F4J4Y8_ARATH", "mass": { "chemical_mass": 48128.0, "monoisotopic_mass": 48128.0 }, "refseq": { "ac": "NP_683549", "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683549" }, "gene_names": [], "protein_names": [ { "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "type": "synonym", "evidence": [ { "id": "NP_683549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683549" }, { "id": "F4J4Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J4Y8", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8", "locus": {} } ], "crossref": [ { "id": "F4J4Y8", "url": "https://alphafold.ebi.ac.uk/entry/F4J4Y8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G10845", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G10845", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00590", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00590", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "820254", "url": "https://www.ncbi.nlm.nih.gov/gene/820254", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", 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"NP_683549", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683549", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G10845", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G10845", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J4Y8", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J4Y8-1", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSSKEVNLCGKRNPEDDDLETKPFLKKHKDEEKKEETPEGLADSLQHKSDQANLISLKEEESTVEGRDDTPDFVEALEKKDGECLLDRKIYLKVPKLSSSLTLPTYQDFLPRQEDETPPADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLENKNGEYFHGHKIILMRGHGETPDFAEHRLIVNHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLGQERDEAAVEGLAETPYFVEEARKKTLFVTNLPPRTSIQRMLYFFQDFEVVRVRLIVDQSGKHMGCGYFEFASANEAEKALEQRNGKSLRYHKIFLELAEIAPYPLQHMYKLAEKLWYEDNLLRESNLKQQKAKSNGFCGKKITFSYGDDC", "length": 423, "header": "tr|F4J4Y8-1|F4J4Y8_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J4Y8-1" }, "isoforms": [ { "isoform_ac": "F4J4Y8-1", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8/entry#F4J4Y8-1", "sequence": { "sequence": "MASSSKEVNLCGKRNPEDDDLETKPFLKKHKDEEKKEETPEGLADSLQHKSDQANLISLKEEESTVEGRDDTPDFVEALEKKDGECLLDRKIYLKVPKLSSSLTLPTYQDFLPRQEDETPPADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLENKNGEYFHGHKIILMRGHGETPDFAEHRLIVNHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLGQERDEAAVEGLAETPYFVEEARKKTLFVTNLPPRTSIQRMLYFFQDFEVVRVRLIVDQSGKHMGCGYFEFASANEAEKALEQRNGKSLRYHKIFLELAEIAPYPLQHMYKLAEKLWYEDNLLRESNLKQQKAKSNGFCGKKITFSYGDDC", "length": 423, "header": "tr|F4J4Y8-1|F4J4Y8_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J4Y8-1" }, "locus": { "chromosome": "3", "start_pos": 3394009, "end_pos": 3397526, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G10845.1", "url": "https://www.ensemblgenomes.org/id/AT3G10845.1" }, { "database": "Ensembl Peptide", "id": "AT3G10845.1", "url": "https://www.ensemblgenomes.org/id/AT3G10845.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J4Y8", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J4Y8", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G10845", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G10845", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "U1 snRNP", "id": "GO:0005685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005685", "evidence": [ { "database": "UniProtKB", "id": "F4J4Y8", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J4Y8", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8" } ], "pmid": "" }, { "name": "U2-type prespliceosome", "id": "GO:0071004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071004", "evidence": [ { "database": "UniProtKB", "id": "F4J4Y8", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F4J4Y8", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8" } ], "pmid": "" }, { "name": "U1 snRNA binding", "id": "GO:0030619", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030619", "evidence": [ { "database": "UniProtKB", "id": "F4J4Y8", "url": "https://www.uniprot.org/uniprotkb/F4J4Y8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J510-1", "uniprot_ac": "F4J510", "uniprot_id": "F4J510_ARATH", "mass": { "chemical_mass": 41568.0, "monoisotopic_mass": 41568.0 }, "refseq": { "ac": "NP_566385", "name": "Haloacid dehalogenase-like hydrolase (HAD) superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566385" }, "gene_names": [], "protein_names": [ { "name": "Haloacid dehalogenase-like hydrolase (HAD) superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_566385", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566385" }, { "id": "F4J510", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J510/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J510", "url": "https://www.uniprot.org/uniprotkb/F4J510" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J510", "locus": {} } ], "crossref": [ { "id": "F4J510", "url": "https://alphafold.ebi.ac.uk/entry/F4J510", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G10970", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G10970", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd07505", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07505", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "820268", "url": "https://www.ncbi.nlm.nih.gov/gene/820268", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G10970", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G10970", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MGLNKYF", "url": "https://omabrowser.org/oma/group/MGLNKYF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4J509", "url": "https://www.orthodb.org/?gene=F4J509", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4J510", "url": "https://www.orthodb.org/?gene=F4J510", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4J511", "url": "https://www.orthodb.org/?gene=F4J511", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47858", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47858", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47858:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47858:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13419", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13419", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_566385", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_566385", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G10970", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G10970", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J509", "url": "https://www.uniprot.org/uniprotkb/F4J509", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J509-1", "url": "https://www.uniprot.org/uniprotkb/F4J509-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J510", "url": "https://www.uniprot.org/uniprotkb/F4J510", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J510-1", "url": "https://www.uniprot.org/uniprotkb/F4J510-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J511", "url": "https://www.uniprot.org/uniprotkb/F4J511", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J511-1", "url": "https://www.uniprot.org/uniprotkb/F4J511-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDCSCSTRPSSLLISSEPSFRFPHSNFSSNLSFQIPKDTKLVKQRLVVRSSSGSDYQNGDVNGFPLKPNKLFMQEAIGAEYGEGFETFRQDGPLKVDVDFWNEKLQDGFLQRIRYAMKPDEAYGLIFSWDNVVADTRSLKLEAWKQLAAEEGKEITEEVDIQRLMLYAGADHVLRKVLFWEKTQSKIDRLKLRLSEIYYDSLLKLTEPKEGLRDWLDAVTTARIPCAVVSNLDRKNMINALERMGLQKYFQAVVSEEDGMESIAHRFLSAAVKLDRKPSKCVVFEDDPRGITAAHNCTMMAVGLIGAHRAYDLVQADLAVGNFYELSVINLRRLFANKGSTFMDHEKQIIEKSPPKRKLTIDTIF", "length": 365, "header": "tr|F4J510-1|F4J510_ARATH Isoform 1 of Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J510-1" }, "isoforms": [ { "isoform_ac": "F4J509-1", "url": "https://www.uniprot.org/uniprotkb/F4J510/entry#F4J509-1", "sequence": { "sequence": "MDCSCSTRPSSLLISSEPSFRFPHSNFSSNLSFQIPKDTKLVKQRLVVRSSSGSDYQNGDVNGFPLKPNKLFMQEAIGAEYGEGFETFRQDGPLKVDVDFWNEKLQDGFLQRIRYAMKPDEAYGLIFSWDNVADTRSLKLEAWKQLAAEEGKEITEEVDIQRLMLYAGADHVLRKVLFWEKTQSKIDRLKLRLSEIYYDSLLKLTEPKEGLRDWLDAVTTARIPCAVVSNLDRKNMINALERMGLQKYFQAVVSEEDGMESIAHRFLSAAVKLDRKPSKCVVFEDDPRGITAAHNCTMMAVGLIGAHRAYDLVQADLAVGNFYELSVINLRRLFANKGSTFMDHEKQIIEKSPPKRKLTIDTIF", "length": 364, "header": "tr|F4J509-1|F4J510_ARATH Computationally mapped isoform of Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J510-1" }, "locus": { "chromosome": "3", "start_pos": 3433098, "end_pos": 3436279, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G10970.3", "url": "https://www.ensemblgenomes.org/id/AT3G10970.3" }, { "database": "Ensembl Peptide", "id": "AT3G10970.3", "url": "https://www.ensemblgenomes.org/id/AT3G10970.3" } ] } }, { "isoform_ac": "F4J510-1", "url": "https://www.uniprot.org/uniprotkb/F4J510/entry#F4J510-1", "sequence": { "sequence": "MDCSCSTRPSSLLISSEPSFRFPHSNFSSNLSFQIPKDTKLVKQRLVVRSSSGSDYQNGDVNGFPLKPNKLFMQEAIGAEYGEGFETFRQDGPLKVDVDFWNEKLQDGFLQRIRYAMKPDEAYGLIFSWDNVVADTRSLKLEAWKQLAAEEGKEITEEVDIQRLMLYAGADHVLRKVLFWEKTQSKIDRLKLRLSEIYYDSLLKLTEPKEGLRDWLDAVTTARIPCAVVSNLDRKNMINALERMGLQKYFQAVVSEEDGMESIAHRFLSAAVKLDRKPSKCVVFEDDPRGITAAHNCTMMAVGLIGAHRAYDLVQADLAVGNFYELSVINLRRLFANKGSTFMDHEKQIIEKSPPKRKLTIDTIF", "length": 365, "header": "tr|F4J510-1|F4J510_ARATH Isoform 1 of Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J510-1" }, "locus": { "chromosome": "3", "start_pos": 3432811, "end_pos": 3436403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G10970.1", "url": "https://www.ensemblgenomes.org/id/AT3G10970.1" }, { "database": "Ensembl Peptide", "id": "AT3G10970.1", "url": "https://www.ensemblgenomes.org/id/AT3G10970.1" } ] } }, { "isoform_ac": "F4J511-1", "url": "https://www.uniprot.org/uniprotkb/F4J510/entry#F4J511-1", "sequence": { "sequence": "MDCSCSTRPSSLLISSEPSFRFPHSNFSSNLSFQIPKDTKLVKQRLVVRSSSGSDYQNGDVNGFPLKPNKLFMQEAIGAEYGEGFETFRQDGPLKVDVDFWNEKLQDGFLQRIRYAMKPDEAYGLIFSWDNVVADTRSLKLEAWKQLAAEEGKEITEEVDIQRLMLYAGADHVLRKVLFWEKTQSKIDRLKLRLSEIYYDSLLKLTEPKEGLRDWLDAVTTARIPCAVVSNLDRKNMINALERMGLQKYFQAMVSEEDGMESIAHRFLSAAVKLDRKPSKCVVFEDDPRGITAAHNCTMMAVGLIGAHRAYDLVQADLAVGNFYELSVINLRRLFANKGSTFMDHEKQIIEKSPPKRKLTIDTIF", "length": 365, "header": "tr|F4J511-1|F4J511_ARATH Computationally mapped isoform of Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J510-1" }, "locus": { "chromosome": "3", "start_pos": 3433073, "end_pos": 3436279, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G10970.2", "url": "https://www.ensemblgenomes.org/id/AT3G10970.2" }, { "database": "Ensembl Peptide", "id": "AT3G10970.2", "url": "https://www.ensemblgenomes.org/id/AT3G10970.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, 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"MLLCLLISKLGNLESLFGRLLKPQVAVRLRNLRNLRFWFVTERLLRKNSCGYEIFHFSLVYVLLTLSQNASWSYLEYLGTSTSDNNCKLLDDFNDSFVLTIYCHLCFCYAFGFDMLSRNMCVRNLKKGDLCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASEGKLNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYNDDKMFWFELDRGQTNKLLRLFKPSPSVRPPTISRDAVPPPRKPIPASSLAQIGDSGATRIDKWSNLFKSSDESTKNKEKDSKEGALGAGSRLVNLGKTKEWETASNNADERRTQPSVSQSGTSYSSALSHMTASSTQEKKNSITNEGSSQACKGVENPWTSAARVPPIHQDSGGFRNAAMEGEDVKVNAYHHQQNLHPTQKGTSTTANNRIVPSISKEEPAEDTYSFIDWDATSSFQVHLDGLNKILEDPKDKECFKSLVGNTGQASSSMVPNSWEDDFEERSIAKSPCGSSYVSAGTGDVVDDIGRMDNFKMEIGSPTVVDILTELLAEVKELKHTQLKQAERMITLEMELLETRRDILRLKGSNGSF", "length": 607, "header": "tr|F4J517-1|F4J517_ARATH Isoform 1 of DCD (Development and Cell Death) domain protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J517-1" }, "isoforms": [ { "isoform_ac": "F4J517-1", "url": "https://www.uniprot.org/uniprotkb/F4J517/entry#F4J517-1", "sequence": { "sequence": 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H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J517", "url": "https://www.uniprot.org/uniprotkb/F4J517" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J517", "url": "https://www.uniprot.org/uniprotkb/F4J517" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G11000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G11000", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": 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"Protein Classification" ] }, { "id": "PTHR10997", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10997:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001189916", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189916", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G17340", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G17340", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J549", "url": "https://www.uniprot.org/uniprotkb/F4J549", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J549-1", "url": 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"length": 1093, "header": "tr|F4J549-1|F4J549_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J549-1" }, "isoforms": [ { "isoform_ac": "F4J549-1", "url": "https://www.uniprot.org/uniprotkb/F4J549/entry#F4J549-1", "sequence": { "sequence": 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"length": 1093, "header": "tr|F4J549-1|F4J549_ARATH Isoform 1 of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J549-1" }, "locus": { "chromosome": "3", "start_pos": 5920478, "end_pos": 5926928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G17340.2", "url": "https://www.ensemblgenomes.org/id/AT3G17340.2" }, { "database": "Ensembl Peptide", "id": "AT3G17340.2", "url": "https://www.ensemblgenomes.org/id/AT3G17340.2" } ] } }, { "isoform_ac": "F4J550-1", "url": "https://www.uniprot.org/uniprotkb/F4J549/entry#F4J550-1", "sequence": { "sequence": "MFVGDDDSVQIVRLLDQTLTSIDGVSVREATEALDLLSTKLPHFPYRLLSIASGSENPSLKVAAATYLKNFTRKSTGTEGTISEVSKEFKDQLLLALLQAEPAVLKVLLELLHIVVVSEFVRKNAWPKLVPELRSAIEKSSLISSSNSSWSTVNALMVLLTVVKPFQYFLQPKLAKEPVPQQLESIAREILVPLVSVLHRLIDKALTTHGWDELELEKTLHIICKCLYFSVKSHMPSALSPLLGSFCQDMIRILDSLSFDWSVTPSDGYLIRSKAGKRSLLLFCTLVSRHRKYSDKLVPEIINCSMKIVKHSSNIGKLGCLTERIISLAFDVISRVMEIGPGWRLLSPHFSFLLDSAIFPALVLNERDISEWEEDADEFIRKNLPSELEEISGWRDDLFTARKSAMNLLCVLAMSKGPPVSTTNTASPAACKRKKGEKNRGNNQRCMGDLLVLPFLSKFPVPSKSYKLDASTSAAYFGVLMAYGSLQEFIQEQNPEYVASFVRTRVLPIYSTPDCSPYLVASANWVLGELASCLPEEMNADVFSSLLKALAMPDQVEISCYPVRFSAAGGIGSLLENEYQPPELLPLLQFITGKIGNEEDEDSMLFQLLKSVVESGNQDIAMHIPYIVSSLVSNMLKFMHPSEDPWSQAILGGLETLAAMTQTYESSKPEADEENNQATEIWLTGQGTISKALSALLQHAWLATDVPPTSCIDHLSTMLRFIVIAATNCNVFVELRLTDLLIVWADILASWNGWEESEDLSVFDCIEEVVGINNKYGFRSFLFRDIPSPPAMPVRPRSVVESIGSFVSKAILEYPSATRRACSCVHTLLYVPDYSSDIEGVGKSLAMVFAESAFSHFLALREKPCTLWRPLLLAISSCYISYSDIVEGVLEKVISGGFELWVSSLAFSYSLTCDDSPSVVSEVKLYVMTLVKVIEHLLDVRHGNATDDLARKCFVSLMEASRRLKEVNEETDDDEDDGEPGEEETESEETDSNDEDSESDECEETEEEFLERYAKVAAELEDSEVIEEADEEDDDHEIDLGSLNEIDPQKLVLSLMEKHHQKVINLVPSEAISTFLNSFPIYTSLFSKCL", "length": 1090, "header": "tr|F4J550-1|F4J550_ARATH Computationally mapped isoform of ARM repeat superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J549-1" }, "locus": { "chromosome": "3", "start_pos": 5920338, "end_pos": 5927037, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G17340.1", "url": "https://www.ensemblgenomes.org/id/AT3G17340.1" }, { "database": "Ensembl Peptide", "id": "AT3G17340.1", "url": "https://www.ensemblgenomes.org/id/AT3G17340.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J549", "url": "https://www.uniprot.org/uniprotkb/F4J549" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J549", "url": "https://www.uniprot.org/uniprotkb/F4J549" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J5F2", "url": "https://www.uniprot.org/uniprotkb/F4J5F2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "F4J5F2", "url": 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Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J5F9", "url": "https://www.uniprot.org/uniprotkb/F4J5F9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J5F9", "url": "https://www.uniprot.org/uniprotkb/F4J5F9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G30235", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G30235", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J5F9", "url": "https://www.uniprot.org/uniprotkb/F4J5F9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], 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"function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J5G5", "url": "https://www.uniprot.org/uniprotkb/F4J5G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J5G5", "locus": {} } ], "crossref": [ { "id": "F4J5G5", "url": "https://alphafold.ebi.ac.uk/entry/F4J5G5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G30320", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G30320", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822732", "url": "https://www.ncbi.nlm.nih.gov/gene/822732", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G30320", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G30320", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_189651", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189651", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G30320", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G30320", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J5G5", "url": "https://www.uniprot.org/uniprotkb/F4J5G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5G5-1", "url": "https://www.uniprot.org/uniprotkb/F4J5G5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLKFWGVTGIVTPCFQEYGGACGEVSKNDLDTYVIKVHLSFWSNILGWVTFREVIVGTMGDRCVTSGLESNLDECGVKKDHTIGGDGLGAQRGRYEQGMANTPKQSELEARVGADTPLAHETAGQTEARREQEITALRENILSMNAMVQQMYSCICGEPTNDGKASASSDPTRTDRVLTFANPKPIEFLLPPPPLAEEKTLELQQTQESNVDVLLPKENSKISLRNFVEQVVGARSQRLSREYGIYKGLSATQKLRLRRSHVSEVTTRLEKRKMKKNHRSQSLHLAFRVRSPRNQLYLGEDRFNSMAVNLAKEKQHTGSRRAQSGENSSHSFTFPPLNQLSVSADSVLSHADTKFTVDEESFECSLAKQVWKPERLCHGEKVQALAFQDGTLHFSFGLVNHVWEPGENLDVVLRNPINCCEDYLFEKYVTGVLQTVYQGKRRPIGSWITELGVMRLLQRVPLMRFQEIISMFKEFGFPVQGQLRYFVKGLTLALQTGVDVKFVLDSVNCNHVWKPVGILVNGTYMSHKLRVVDEFLERQILSSVMDLLVGSELCVYAYLVKASSEGSNMNLRTTKMNRQLELSTHGPAVEGVRRFKALLLRILVKRPRGVRPKQDWWRFLQKLIILNHVPDDEARTRKQEYKVSAFPHQIERFLPIHLEDKVYFSRASSNRCGWLVFDRGKKNRILGYVMSIVI", "length": 695, "header": "tr|F4J5G5-1|F4J5G5_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J5G5-1" }, "isoforms": [ { "isoform_ac": "F4J5G5-1", "url": "https://www.uniprot.org/uniprotkb/F4J5G5/entry#F4J5G5-1", "sequence": { "sequence": "MLLKFWGVTGIVTPCFQEYGGACGEVSKNDLDTYVIKVHLSFWSNILGWVTFREVIVGTMGDRCVTSGLESNLDECGVKKDHTIGGDGLGAQRGRYEQGMANTPKQSELEARVGADTPLAHETAGQTEARREQEITALRENILSMNAMVQQMYSCICGEPTNDGKASASSDPTRTDRVLTFANPKPIEFLLPPPPLAEEKTLELQQTQESNVDVLLPKENSKISLRNFVEQVVGARSQRLSREYGIYKGLSATQKLRLRRSHVSEVTTRLEKRKMKKNHRSQSLHLAFRVRSPRNQLYLGEDRFNSMAVNLAKEKQHTGSRRAQSGENSSHSFTFPPLNQLSVSADSVLSHADTKFTVDEESFECSLAKQVWKPERLCHGEKVQALAFQDGTLHFSFGLVNHVWEPGENLDVVLRNPINCCEDYLFEKYVTGVLQTVYQGKRRPIGSWITELGVMRLLQRVPLMRFQEIISMFKEFGFPVQGQLRYFVKGLTLALQTGVDVKFVLDSVNCNHVWKPVGILVNGTYMSHKLRVVDEFLERQILSSVMDLLVGSELCVYAYLVKASSEGSNMNLRTTKMNRQLELSTHGPAVEGVRRFKALLLRILVKRPRGVRPKQDWWRFLQKLIILNHVPDDEARTRKQEYKVSAFPHQIERFLPIHLEDKVYFSRASSNRCGWLVFDRGKKNRILGYVMSIVI", "length": 695, "header": "tr|F4J5G5-1|F4J5G5_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J5G5-1" }, "locus": { "chromosome": "3", "start_pos": 11931287, "end_pos": 11934694, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G30320.1", "url": "https://www.ensemblgenomes.org/id/AT3G30320.1" }, { "database": "Ensembl Peptide", "id": "AT3G30320.1", "url": "https://www.ensemblgenomes.org/id/AT3G30320.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J5G5", "url": "https://www.uniprot.org/uniprotkb/F4J5G5" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J5G5", "url": "https://www.uniprot.org/uniprotkb/F4J5G5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G30320", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G30320", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4J5G5", "url": "https://www.uniprot.org/uniprotkb/F4J5G5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J5G5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 695, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J5G5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J5G5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 328, "end_pos": 330 }, { "start_pos": 522, "end_pos": 524 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"sequence": { "sequence": "MGAVTSSMAAKFAFFPPNPPSYGVEVVEGKLRLIGVENVKENVEVLKLKTKRGNQVVAAYIKNPTASLTLLYSHGNAADLGQMFELFSELSLHLRVNLIGYDYSGYGRSSGKPSEQNTYSDIEAVYRCLEEKYGVKEQDVILYGQSVGSGPTLELASRLPNLRAVVLHSAIASGLRVMYPVKRTYWFDIYKNVEKISFVKCPVLVIHGTSDDVVNWSHGKQLFELCKEKYEPLWIKGGNHCDLELYPQYIKHLRKFVSAIEKSPILRNGPVPLTEKARSSTDIREPARPSTDQRDKSRTSTDQREMPKLSTDIARASVDKRERTRRSVDGTEKPSNSAEQQLVQPEKGRNSIDRFGEMIRSVGFCNIDCFKPTATAK", "length": 377, "header": "tr|F4J5H1-1|F4J5H1_ARATH Isoform 1 of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5H1-1" }, "locus": { "chromosome": "3", "start_pos": 11973971, "end_pos": 11976909, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G30380.2", "url": "https://www.ensemblgenomes.org/id/AT3G30380.2" }, { "database": "Ensembl Peptide", "id": "AT3G30380.2", "url": "https://www.ensemblgenomes.org/id/AT3G30380.2" } ] } }, { "isoform_ac": "Q9LI62-1", "url": "https://www.uniprot.org/uniprotkb/F4J5H1/entry#Q9LI62-1", "sequence": { "sequence": "MGAVTSSMAAKFAFFPPNPPSYGVEVVEGKLRLIGVENVKENVEVLKLKTKRGNQVVAAYIKNPTASLTLLYSHGNAADLGQMFELFSELSLHLRVNLIGYDYSGYGRSSGKPSEQNTYSDIEAVYRCLEEKYGVKEQDVILYGQSVGSGPTLELASRLPNLRAVVLHSAIASGLRVMYPVKRTYWFDIYKNVEKISFVKCPVLVIHGTSDDVVNWSHGKQLFELCKEKYEPLWIKGGNHCDLELYPQYIKHLRKFVSAIEKSPILRNGPVPLTEKARSSTDIREPARPSTDQRDKSRTSTDQREMPKLSTDIARASVDKRERTRRSVDGTEKPSNSAEQQLVQPEKGRNSIDRYISQSFYDVLMIMLLMIMYDNRFGEMIRSVGFCNIDCFKPTATAK", "length": 399, "header": "tr|Q9LI62-1|Q9LI62_ARATH Computationally mapped isoform of Alpha/beta-Hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J5H1-1" }, "locus": { "chromosome": "3", "start_pos": 11974009, "end_pos": 11976571, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G30380.1", "url": "https://www.ensemblgenomes.org/id/AT3G30380.1" }, { "database": "Ensembl Peptide", "id": "AT3G30380.1", "url": "https://www.ensemblgenomes.org/id/AT3G30380.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 7, "end_pos": 7, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LI62", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LI62" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser7" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J5H1", "url": "https://www.uniprot.org/uniprotkb/F4J5H1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LI62", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LI62" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J5H1", "url": "https://www.uniprot.org/uniprotkb/F4J5H1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G30380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G30380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4J5H1", "url": "https://www.uniprot.org/uniprotkb/F4J5H1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "palmitoyl-(protein) hydrolase activity", "id": "GO:0008474", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008474", "evidence": [ { "database": "UniProtKB", "id": "F4J5H1", "url": "https://www.uniprot.org/uniprotkb/F4J5H1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J5H1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 377, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J5H1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J5H1" } ], "lectin_list": [], "domain_list": [ { 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"TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J5U9", "url": "https://www.uniprot.org/uniprotkb/F4J5U9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J5U9-1", "url": "https://www.uniprot.org/uniprotkb/F4J5U9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKQAHKKFCWIIKNFSPQSERLYSVPVLIGDCKWRPIAYPIRDKYFSLCLQVVDFESLPCGWGRYVELRLTLRNQHNSLNLSIKADHCFDEKRTTWGIPIPERIPICKLQTELYQSEHVVKGDFKIIAEVDVFEAVGTLTESDISGKASELLTKKIRNDGNESGDLLKKTSPEKESNHVDVNGFQVLPSQVEYVRSIFERHPDIAVEFRAKNQHLRTSCMIFLLSLIETLCQSLEELSNEDLVEADIALTYVKDAGFKVDWLEKKLDQVKDKKEREQSGLARLHELEEYLLKLKQKCSNLDLLVEKENVELSATRTPMSFNDVV", "length": 325, "header": "sp|F4J5U9-1|MCC30_ARATH Isoform 1 of MATH domain and coiled-coil domain-containing protein At3g58430 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4J5U9-1" }, "isoforms": [ { "isoform_ac": "F4J5U9-1", "url": "https://www.uniprot.org/uniprotkb/F4J5U9/entry#F4J5U9-1", "sequence": { "sequence": "MEKQAHKKFCWIIKNFSPQSERLYSVPVLIGDCKWRPIAYPIRDKYFSLCLQVVDFESLPCGWGRYVELRLTLRNQHNSLNLSIKADHCFDEKRTTWGIPIPERIPICKLQTELYQSEHVVKGDFKIIAEVDVFEAVGTLTESDISGKASELLTKKIRNDGNESGDLLKKTSPEKESNHVDVNGFQVLPSQVEYVRSIFERHPDIAVEFRAKNQHLRTSCMIFLLSLIETLCQSLEELSNEDLVEADIALTYVKDAGFKVDWLEKKLDQVKDKKEREQSGLARLHELEEYLLKLKQKCSNLDLLVEKENVELSATRTPMSFNDVV", "length": 325, "header": "sp|F4J5U9-1|MCC30_ARATH Isoform 1 of MATH domain and coiled-coil domain-containing protein At3g58430 OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4J5U9-1" }, "locus": { "chromosome": "3", "start_pos": 21613163, "end_pos": 21616174, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G58430.2", "url": "https://www.ensemblgenomes.org/id/AT3G58430.2" }, { "database": "Ensembl Peptide", "id": "AT3G58430.2", "url": "https://www.ensemblgenomes.org/id/AT3G58430.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of 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Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J5U9", "url": "https://www.uniprot.org/uniprotkb/F4J5U9" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "RTM3, which controls long-distance movement of potyviruses, is a member of a new plant gene family encoding a meprin and TRAF homology domain-containing protein.", "journal": "Plant Physiol.", "date": "2010", "authors": "Cosson Patrick, Sofer Luc, Le Quang Hien, L\u00e9ger Val\u00e9rie, Schurdi-Levraud Val\u00e9rie, Whitham Steven A, Yamamoto Miki L, Gopalan Suresh, Le Gall Olivier, Candresse Thierry, Carrington James C, Revers Fr\u00e9d\u00e9ric", "evidence": [ { "database": "UniProtKB", "id": "F4J5U9", "url": "https://www.uniprot.org/uniprotkb/F4J5U9" } ], "reference": [ { "type": "PubMed", "id": "20584941", "url": "https://glygen.org/publication/PubMed/20584941" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J5U9", "url": "https://www.uniprot.org/uniprotkb/F4J5U9" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G58430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G58430", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J5U9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 325, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J5U9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J5U9" } ], 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"reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J687", "locus": {} } ], "crossref": [ { "id": "F4J687", "url": "https://alphafold.ebi.ac.uk/entry/F4J687", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G11300", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G11300", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820301", "url": "https://www.ncbi.nlm.nih.gov/gene/820301", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G11300", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G11300", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_683550", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683550", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G11300", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G11300", "database": "TAIR", 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"MTKSMWGHEHHKVFVDLCKEQKMLGNKPSGSGRYGVDLFNAVISHMKWDPQTKTFGASIRDWANYLQDLEFIFEGTSGSKKKRRCNHPDEDTQSASKAYWSSSSHELLVDLLFQESLKGNRPIKTRDRMASCSRILLLVASLSAIFDEHSSLQVQCETLFYGRLIYRGLEQRFGGTIVILPKRCVPYPFPPPHTEKIIVFGEIFEALV", "length": 208, "header": "tr|F4J687-1|F4J687_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J687-1" }, "locus": { "chromosome": "3", "start_pos": 3539347, "end_pos": 3540473, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G11300.1", "url": "https://www.ensemblgenomes.org/id/AT3G11300.1" }, { "database": "Ensembl Peptide", "id": "AT3G11300.1", "url": "https://www.ensemblgenomes.org/id/AT3G11300.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann 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Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J687", "url": "https://www.uniprot.org/uniprotkb/F4J687" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J687", "url": "https://www.uniprot.org/uniprotkb/F4J687" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G11300", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G11300", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4J687", "url": "https://www.uniprot.org/uniprotkb/F4J687" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J687-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 208, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J687-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J687" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J6D3-1", "uniprot_ac": "F4J6D3", "uniprot_id": "F4J6D3_ARATH", "mass": { "chemical_mass": 40814.0, "monoisotopic_mass": 40814.0 }, "refseq": { "ac": "NP_001030718", "name": "Kinase interacting (KIP1-like) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001030718" }, "gene_names": [], "protein_names": [ { "name": "Kinase interacting (KIP1-like) family protein", "type": "synonym", "evidence": [ { "id": "NP_001030718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001030718" }, { "id": "F4J6D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6D3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J6D3", "url": "https://www.uniprot.org/uniprotkb/F4J6D3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J6D3", "locus": {} } ], "crossref": [ { "id": "F4J6D3", "url": "https://alphafold.ebi.ac.uk/entry/F4J6D3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G17680", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G17680", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "821035", "url": "https://www.ncbi.nlm.nih.gov/gene/821035", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G17680", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G17680", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR36001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36001:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36001:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001030718", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001030718", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G17680", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G17680", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J6D3", "url": "https://www.uniprot.org/uniprotkb/F4J6D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6D3-1", "url": "https://www.uniprot.org/uniprotkb/F4J6D3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LUM7", "url": "https://www.uniprot.org/uniprotkb/Q9LUM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LUM7-1", "url": "https://www.uniprot.org/uniprotkb/Q9LUM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNKASMEAPQLPSLSAFSHFQIFKSQSMLQKQWTPFFSLSLALFVFLSHHFLSEKMLETDLEARMQILRESGFQESQGDDDTFAQRAEWFYQGRPLLLSLCLDLYNGYVTLLGRSSHQTRLKPTTSLPNQLLQDDDDCISDIDSVSEVSSEVESTLSFQQMKDPTAVSEKVDELVSQLVTASLDKEILKHELLHKDQQFHEASKTIELLKKFVMLLEMEKEVAVEENANLGYKLTSLLEENRELATEALFMKNEAVGLARCVLKMRDDHFHKVCILQNRIYSLQASRNSEPVSDKVSYGCFGLDKHKTKKKKENKTEEKKPGFKWLKKLNTINLFTKCSLNPSAAAPSCCTFDLPY", "length": 357, "header": "tr|F4J6D3-1|F4J6D3_ARATH Isoform 1 of Kinase interacting (KIP1-like) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6D3-1" }, "isoforms": [ { "isoform_ac": "F4J6D3-1", "url": "https://www.uniprot.org/uniprotkb/F4J6D3/entry#F4J6D3-1", "sequence": { "sequence": "MKNKASMEAPQLPSLSAFSHFQIFKSQSMLQKQWTPFFSLSLALFVFLSHHFLSEKMLETDLEARMQILRESGFQESQGDDDTFAQRAEWFYQGRPLLLSLCLDLYNGYVTLLGRSSHQTRLKPTTSLPNQLLQDDDDCISDIDSVSEVSSEVESTLSFQQMKDPTAVSEKVDELVSQLVTASLDKEILKHELLHKDQQFHEASKTIELLKKFVMLLEMEKEVAVEENANLGYKLTSLLEENRELATEALFMKNEAVGLARCVLKMRDDHFHKVCILQNRIYSLQASRNSEPVSDKVSYGCFGLDKHKTKKKKENKTEEKKPGFKWLKKLNTINLFTKCSLNPSAAAPSCCTFDLPY", "length": 357, "header": "tr|F4J6D3-1|F4J6D3_ARATH Isoform 1 of Kinase interacting (KIP1-like) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6D3-1" }, "locus": { "chromosome": "3", "start_pos": 6042947, "end_pos": 6044504, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G17680.2", "url": "https://www.ensemblgenomes.org/id/AT3G17680.2" }, { "database": "Ensembl Peptide", "id": "AT3G17680.2", "url": "https://www.ensemblgenomes.org/id/AT3G17680.2" } ] } }, { "isoform_ac": "Q9LUM7-1", "url": "https://www.uniprot.org/uniprotkb/F4J6D3/entry#Q9LUM7-1", "sequence": { "sequence": "MSSSSMPLFPFSLYNFIYESLTKTSISFRLKKMKNKASMEAPQLPSLSDLEARMQILRESGFQESQGDDDTFAQRAEWFYQGRPLLLSLCLDLYNGYVTLLGRSSHQTRLKPTTSLPNQLLQDDDDCISDIDSVSEVSSEVESTLSFQQMKDPTAVSEKVDELVSQLVTASLDKEILKHELLHKDQQFHEASKTIELLKKFVMLLEMEKEVAVEENANLGYKLTSLLEENRELATEALFMKNEAVGLARCVLKMRDDHFHKVCILQNRIYSLQASRNSEPVSDKVSYGCFGLDKHKTKKKKENKTEEKKPGFKWLKKLNTINLFTKCSLNPSAAAPSCCTFDLPY", "length": 345, "header": "tr|Q9LUM7-1|F4J6D3_ARATH Computationally mapped isoform of Kinase interacting (KIP1-like) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6D3-1" }, "locus": { "chromosome": "3", "start_pos": 6042931, "end_pos": 6044762, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G17680.3", "url": "https://www.ensemblgenomes.org/id/AT3G17680.3" }, { "database": "Ensembl Peptide", "id": "AT3G17680.3", "url": "https://www.ensemblgenomes.org/id/AT3G17680.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q9LUM7", "url": "https://www.uniprot.org/uniprotkb/Q9LUM7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "Q9LUM7", "url": "https://www.uniprot.org/uniprotkb/Q9LUM7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G17680", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G17680", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F4J6D3", "url": "https://www.uniprot.org/uniprotkb/F4J6D3" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F4J6D3", "url": "https://www.uniprot.org/uniprotkb/F4J6D3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F4J6D3", "url": "https://www.uniprot.org/uniprotkb/F4J6D3" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4J6D3", "url": "https://www.uniprot.org/uniprotkb/F4J6D3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J6D3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 357, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J6D3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J6D3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J6D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6D3" }, { "id": "PS51774", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51774" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAB", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 123, "start_aa": "Phe", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 315, "end_pos": 317 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J6I7-1", "uniprot_ac": "F4J6I7", "uniprot_id": "F4J6I7_ARATH", "mass": { "chemical_mass": 67827.0, "monoisotopic_mass": 67827.0 }, "refseq": { "ac": "NP_189063", "name": "Ankyrin repeat family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189063" }, "gene_names": [], "protein_names": [ { "name": "Ankyrin repeat family protein", "type": "synonym", "evidence": [ { "id": "NP_189063", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189063" }, { "id": "F4J6I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6I7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J6I7", "url": "https://www.uniprot.org/uniprotkb/F4J6I7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J6I7", "locus": {} } ], "crossref": [ { "id": "F4J6I7", "url": "https://alphafold.ebi.ac.uk/entry/F4J6I7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G24210", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G24210", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822007", "url": "https://www.ncbi.nlm.nih.gov/gene/822007", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055285", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055285", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G24210", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24210", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TQKFRAN", "url": "https://omabrowser.org/oma/group/TQKFRAN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12447", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12447", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12447:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12447:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11904", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11904", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189063", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189063", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G24210", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G24210", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J6I7", "url": "https://www.uniprot.org/uniprotkb/F4J6I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6I7-1", "url": "https://www.uniprot.org/uniprotkb/F4J6I7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENVDVSKYIHSSVHKAVASKDYVGLRAILSSLPKPKDPCEIQTEAASLSEEAKSDTISAVIDRRDVPSRDTPLHLAVKLCDSTSVEMLMVAGADWTLQNEDGWNALQEAVCSRQEAIAMIIVRHYQPLAWAKWCRRLPRLIATMSKMKDFYLEMSFHFESSVVPFVSKVAPSDTYKVWKVGSNLRADMTMAGFDGFKIQRSDQSILFLGDGSEDGEVARGSLYMVNHKDKEVMNALDGACGVPSEEEVRKEVAAMCKSNIFRPGIDVTQAVLSPQTNWRRQEKSEMVGPWKAKVYEMNNVVVSVKSRKVPGSLAVEGGDDDICDVLTDEEQKQLEDALKLDLPDFPNVNGENGFIVHHQEDHVEANKKAEKKGWLGGWRKKETKQEKQIQYAPPRSSLCVNEKVSNLLGESNQIKPGRHSVDNEHYRKPKALVSDKTRHESEYKKGLRPVLWLSPNFPLQTEELLPLLDILANKVKAIRRLRELLTTKLPSGTFPVKVAIPVVPTIKVLVTFTKFEEIEPVDEFKTPLSSPTSSGYESPAAATTDFTNSSSSSSWFRRSRSNKDGGSSKSKTLQDPFAIPTGYTWVSLESKKRKPKKGGKKTEQVS", "length": 607, "header": "tr|F4J6I7-1|F4J6I7_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J6I7-1" }, "isoforms": [ { "isoform_ac": "F4J6I7-1", "url": "https://www.uniprot.org/uniprotkb/F4J6I7/entry#F4J6I7-1", "sequence": { "sequence": "MENVDVSKYIHSSVHKAVASKDYVGLRAILSSLPKPKDPCEIQTEAASLSEEAKSDTISAVIDRRDVPSRDTPLHLAVKLCDSTSVEMLMVAGADWTLQNEDGWNALQEAVCSRQEAIAMIIVRHYQPLAWAKWCRRLPRLIATMSKMKDFYLEMSFHFESSVVPFVSKVAPSDTYKVWKVGSNLRADMTMAGFDGFKIQRSDQSILFLGDGSEDGEVARGSLYMVNHKDKEVMNALDGACGVPSEEEVRKEVAAMCKSNIFRPGIDVTQAVLSPQTNWRRQEKSEMVGPWKAKVYEMNNVVVSVKSRKVPGSLAVEGGDDDICDVLTDEEQKQLEDALKLDLPDFPNVNGENGFIVHHQEDHVEANKKAEKKGWLGGWRKKETKQEKQIQYAPPRSSLCVNEKVSNLLGESNQIKPGRHSVDNEHYRKPKALVSDKTRHESEYKKGLRPVLWLSPNFPLQTEELLPLLDILANKVKAIRRLRELLTTKLPSGTFPVKVAIPVVPTIKVLVTFTKFEEIEPVDEFKTPLSSPTSSGYESPAAATTDFTNSSSSSSWFRRSRSNKDGGSSKSKTLQDPFAIPTGYTWVSLESKKRKPKKGGKKTEQVS", "length": 607, "header": "tr|F4J6I7-1|F4J6I7_ARATH Isoform 1 of Ankyrin repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J6I7-1" }, "locus": { "chromosome": "3", "start_pos": 8753385, "end_pos": 8756151, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24210.1", "url": "https://www.ensemblgenomes.org/id/AT3G24210.1" }, { "database": "Ensembl Peptide", "id": "AT3G24210.1", "url": "https://www.ensemblgenomes.org/id/AT3G24210.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J6I7", "url": "https://www.uniprot.org/uniprotkb/F4J6I7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J6I7", "url": "https://www.uniprot.org/uniprotkb/F4J6I7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G24210", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24210", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MB90-1", "protein_name": "Ankyrin repeat domain-containing protein 13D", "gene_name": "Ankrd13d", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGVGPTFPLHRLVWANRHRELEAALHSRQHDIEQEDPRGRTPLELAVSLGNLESVRVLLRHNANVGKESHQGWAVLQEAVSTGDPEMVQLVLQYRDFQRATQRLAGIPELLNKLRQAPDFYVEMKWEFTSWVPLVSKMCPSDVYRVWKRGESLRVDTSLLGFEHMTWQRGRRSFIFRGQEAGALVMEVDHDRQVVHTETLGPALHEPEALLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMETVSGYEAKVYSATNVELVTRTRTEHLSDQDKLRNKGGKTPFQSFLGMAQQHSSHSGAPVQQAASPTNPTAISPEEYFDPSFSLESRNIGRPIEMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAKLRDFITLRLPPGFPVKIEIPLFHVLNARITFSNLCGCDEPVSSVWVPAPSSAISAPGSPFPCEVDPTVFEVPEGYSVLGAERSEPLRDEDDDLLQFAIQQSLLEAGTEAEQVTVWEALTNTRPGILPPPQVTVFEEQLQLEQALQESLQLSTESRAPESPQRTPPSPVPPSFEEQLRLALELSSREQEEQERRGQQEEEDLQRILRLSLTEH", "length": 605 }, "evidence": [ { "id": "F4J6I7", "url": "https://omabrowser.org/oma/group/F4J6I7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZUJ7-1", "protein_name": "Ankyrin repeat domain 13D", "gene_name": "Ankrd13d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGLGPTFPLHRLVWANRHRELEAALHSRKHDIEQEDPRGRTPLELAVTLGNLESVRVLLRHNANVGKESHQGWAVLQEAVSTGDPEMVQLVLQYRDFQRATQRLAGIPELLNKLRQAPDFYVEMKWEFTSWVPLVSKMCPSDVYRVWKRGESLRVDTSLLGFEHMAWQRGRRSFIFRGQEAGALVMEVDHDRQVVHTETLGPALHEPEVLLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMETVSGYEAKVYSATNVELVTRTRTEHLSDQDKLRNKGGKTPFQSFLGMAQQHSSHTAAPVQQAASPTNPTAISAEEYFDPSFSLESRNIGRPIEMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAKLRDFITLRLPPGFPVKIEIPLFHVLNARITFSNLCGCDEPVSSVCVPKPSSAISASGSPFPCEVDPTVFEVPEGYSVLGAERSEPLRDEDDDLLQFAIQQSLLEAGTEAEQVTVWEALTNTRPGIHPPPRVTVFEEQLQLEQALQESLQLSTESRGPESPQKTPPPPAPPSFEEQLRLALELSSREQEELERRGQQEEEDLQRILQLSLTEH", "length": 605 }, "evidence": [ { "id": "F4J6I7", "url": "https://omabrowser.org/oma/group/F4J6I7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N2K0-1", "protein_name": "Ankyrin repeat domain 13D", "gene_name": "ANKRD13D", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGPGPTFPLHRLVWANRHRELEAALHSRQHDIEQEDPRGRTPLELAVSLGNLESVRVLLRHNANVGKESCQGWAVLQEAVSTGDPEMVQLVLQYRDYQRAMQRLAGIPELLNKLRQAPDFYVEMKWEFTSWVPLVSKMCPSDVYRVWKRGESLRVDTSLLGFEHMTWQRGRRSFIFKGQEAGALVMEVDHDRQVVHTETLGLALHEPEALLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMETVSGYEAKVYSATNVELVTRTRTEHLSDQDKARIKGGKTPFQSFLGMAQQHSSHNGAPVQQAASPTNPTAISPDEYFDPNFSLESRNIGRPIEMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAKLRDFITLRLPPGFPVKIEIPLFHVLNARITFSNLCGCDEPLSSVWVPAPGSAVATSGNPFPCEVDPAVFEVPEGYSVLGAERSEPLRDEDDDLLQFAIQQSLLEAGTEAEQVTVWEALTNTRPGVHHAQATAYEEQLQLERALQESLRMSTEPGGPGSPHRTPPTPAPPSFEEQLRLALELSSQEQEERERLGQQEEEDLQRILQLSLTEH", "length": 604 }, "evidence": [ { "id": "F4J6I7", "url": "https://omabrowser.org/oma/group/F4J6I7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1RUX4-1", "protein_name": "Ankyrin repeat domain 13D", "gene_name": "ANKRD13D", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGPGPTFPLHRLVWANRHRELEAALHSRQHDIEQEDPRGRTPLELAVSLGNLESVRVLLRHNANVGKESCQGWAVLQEAVSTGDPEMVQLVLQYRDYQRATQRLAGIPELLHKLRQAPDFYVEMKWEFTSWVPLVSKMCPSDVYRVWKRGESLRVDTSLLGFEHMTWQRGRRSFIFKGQEVGALVMEVDHDRQVVHTETLGLALHEPEALLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMETVSGYEAKVYSATNVELVTRTRTEHLSDQDKSRSKGGKTPFQSFLGMAQQHSSHNGAPVQQAASPTNPTAISPDEYFDPNFSLESRNIGRPIEMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAKLRDFITLRLPPGFPVKIEIPLFHVLNARITFGNLCGCDEPLSSVWAPAPGSAVAASGSPFPCEVDPAVFEVPEGYSVLGTERSEPLRDEDDDLLQFAIQQSLLEAGTEAEQVTVWEALSNTRPGTHLPQGTAFEEQLQLERALQESLRMSTETGGPGSPHRTPPALAPPSFEEQLRLALELSSREQEERERRGQQEEEDLQRILQLSLTEH", "length": 604 }, "evidence": [ { "id": "F4J6I7", "url": "https://omabrowser.org/oma/group/F4J6I7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q6PD24-1", "protein_name": "Ankyrin repeat domain-containing protein 13D", "gene_name": "Ankrd13d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"MAGPGPTFPLHRLVWANRHRELEAALHSHQHDIEQEDPRGRTPLELAVSLGNLESVRVLLRHNANVGKENRQGWAVLQEAVSTGDPEMVQLVLQYRDYQRATQRLAGIPELLNKLRQAPDFYVEMKWEFTSWVPLVSKMCPSDVYRVWKRGESLRVDTSLLGFEHMTWQRGRRSFIFKGQEAGALVMEVDHDRQVVHVETLGLTLQEPETLLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMETVSGYEAKVYSATNVELVTRTRTEHLSDQDKSRSKAGKTPFQSFLGMAQQHSSHTGAPVQQAASPTNPTAISPEEYFDPNFSLESRNIGRPIEMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAKLRDFITLRLPPGFPVKIEIPLFHVLNARITFSNLCGCDEPLSSVWVPAPSSAVAASGNPFPCEVDPTVFEVPNGYSVLGMERNEPLRDEDDDLLQFAIQQSLLEAGTEAEQVTVWEALTNTRPGARPPPQATVYEEQLQLERALQESLQLSTEPRGPGSPPRTPPAPGPPSFEEQLRLALELSSREQEERERRGQQEEEDLQRILQLSLTEH", "length": 605 }, "evidence": [ { "id": "F4J6I7", "url": "https://omabrowser.org/oma/group/F4J6I7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J6I7", "url": "https://www.uniprot.org/uniprotkb/F4J6I7" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "F4J6I7", "url": "https://www.uniprot.org/uniprotkb/F4J6I7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J6I7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 607, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J6I7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J6I7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J6I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6I7" }, { "id": "PF11904", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11904" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ankyrin repeat", "eco_id": "ECO_0000259", "start_pos": 186, "end_pos": 585, "start_aa": "Arg", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 549, "end_pos": 551 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J6M8-1", "uniprot_ac": "F4J6M8", "uniprot_id": "F4J6M8_ARATH", "mass": { "chemical_mass": 18455.0, "monoisotopic_mass": 18455.0 }, "refseq": { "ac": "NP_683590", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683590" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4J6M8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6M8/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_683590", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683590" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J6M8", "url": "https://www.uniprot.org/uniprotkb/F4J6M8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J6M8", "locus": {} } ], "crossref": [ { "id": "F4J6M8", "url": "https://alphafold.ebi.ac.uk/entry/F4J6M8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G24517", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G24517", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822046", "url": "https://www.ncbi.nlm.nih.gov/gene/822046", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G24517", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24517", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_683590", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683590", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G24517", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G24517", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J6M8", "url": "https://www.uniprot.org/uniprotkb/F4J6M8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6M8-1", "url": "https://www.uniprot.org/uniprotkb/F4J6M8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHVRSRVVEGSSTNESMDNKLVTVKRRDDEKLELFIAEEVGNDGCKVKKVEEASVIITPWRRDHNAVLSQALKIMNTKLNNVESLLLEFSNQRIGVGKVEEALVITAPWRRDHNADFLQSFNYKGVRRRFSNYLKKVGNFFGDPRDMSLNSTADAGLLEGDT", "length": 163, "header": "tr|F4J6M8-1|F4J6M8_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6M8-1" }, "isoforms": [ { "isoform_ac": "F4J6M8-1", "url": "https://www.uniprot.org/uniprotkb/F4J6M8/entry#F4J6M8-1", "sequence": { "sequence": "MAHVRSRVVEGSSTNESMDNKLVTVKRRDDEKLELFIAEEVGNDGCKVKKVEEASVIITPWRRDHNAVLSQALKIMNTKLNNVESLLLEFSNQRIGVGKVEEALVITAPWRRDHNADFLQSFNYKGVRRRFSNYLKKVGNFFGDPRDMSLNSTADAGLLEGDT", "length": 163, "header": "tr|F4J6M8-1|F4J6M8_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6M8-1" }, "locus": { "chromosome": "3", "start_pos": 8938106, "end_pos": 8938641, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G24517.1", "url": "https://www.ensemblgenomes.org/id/AT3G24517.1" }, { "database": "Ensembl Peptide", "id": "AT3G24517.1", "url": "https://www.ensemblgenomes.org/id/AT3G24517.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J6M8", "url": "https://www.uniprot.org/uniprotkb/F4J6M8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J6M8", "url": "https://www.uniprot.org/uniprotkb/F4J6M8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G24517", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G24517", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J6M8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 163, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J6M8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J6M8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 15, "end_pos": 17 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J6N4", "url": "https://www.uniprot.org/uniprotkb/F4J6N4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J6N4", "locus": {} } ], "crossref": [ { "id": "F4J6N4", "url": "https://alphafold.ebi.ac.uk/entry/F4J6N4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G30520", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G30520", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822766", "url": "https://www.ncbi.nlm.nih.gov/gene/822766", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G30520", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G30520", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KELVFWP", "url": "https://omabrowser.org/oma/group/KELVFWP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31704", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31704", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31704:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31704:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_189673", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189673", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G30520", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G30520", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J6N4", "url": "https://www.uniprot.org/uniprotkb/F4J6N4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6N4-1", "url": "https://www.uniprot.org/uniprotkb/F4J6N4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESNRRRNTNPSRGTVSTHPTEILTPPTETTIRLDEFRKSYKKWKALTHKTGITVDPDTSFINASDAWWTEQEFGCKLTKNLNRKPPVFWDVMQRCLVLHDVQSQSQHFACQRREQLIHEHGVDEEGEDYSDSDSGNMPQTEVPETQEEEEVYRVTIDDDEIFQNSAARRQQRGRPNFQSTARRGSSAQRSGGTSRVSIGSGSGGSRRRQSFETTIQDSITSFGEFQRQSFQQLRPRAFDQDDYDEFKKAEAIFTALDLPKHTRFHWACINALKELVFWPKYFIDIAASPDKDKWRTPPNVAQWGTPPNVAQCRTPPNAPHWGTPPNAHGTTPTNVQYGFSVGCQEDGATTETPPIIQQTSSSGLGFTNYFETGQMPQTPRPQGSNASHHSDVGDEY", "length": 397, "header": "tr|F4J6N4-1|F4J6N4_ARATH Isoform 1 of Heat shock protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6N4-1" }, "isoforms": [ { "isoform_ac": "F4J6N4-1", "url": "https://www.uniprot.org/uniprotkb/F4J6N4/entry#F4J6N4-1", "sequence": { "sequence": "MESNRRRNTNPSRGTVSTHPTEILTPPTETTIRLDEFRKSYKKWKALTHKTGITVDPDTSFINASDAWWTEQEFGCKLTKNLNRKPPVFWDVMQRCLVLHDVQSQSQHFACQRREQLIHEHGVDEEGEDYSDSDSGNMPQTEVPETQEEEEVYRVTIDDDEIFQNSAARRQQRGRPNFQSTARRGSSAQRSGGTSRVSIGSGSGGSRRRQSFETTIQDSITSFGEFQRQSFQQLRPRAFDQDDYDEFKKAEAIFTALDLPKHTRFHWACINALKELVFWPKYFIDIAASPDKDKWRTPPNVAQWGTPPNVAQCRTPPNAPHWGTPPNAHGTTPTNVQYGFSVGCQEDGATTETPPIIQQTSSSGLGFTNYFETGQMPQTPRPQGSNASHHSDVGDEY", "length": 397, "header": "tr|F4J6N4-1|F4J6N4_ARATH Isoform 1 of Heat shock protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J6N4-1" }, "locus": { "chromosome": "3", "start_pos": 12130340, "end_pos": 12132173, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G30520.1", "url": "https://www.ensemblgenomes.org/id/AT3G30520.1" }, { "database": "Ensembl Peptide", "id": "AT3G30520.1", "url": "https://www.ensemblgenomes.org/id/AT3G30520.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J6N4", "url": "https://www.uniprot.org/uniprotkb/F4J6N4" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J6N4", "url": "https://www.uniprot.org/uniprotkb/F4J6N4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G30520", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G30520", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J6N4", "url": "https://www.uniprot.org/uniprotkb/F4J6N4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 386, "end_pos": 388, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J6N4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 397, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J6N4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J6N4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 386, "end_pos": 388 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J6R3-1", "uniprot_ac": "F4J6R3", "uniprot_id": "F4J6R3_ARATH", "mass": { "chemical_mass": 53413.0, "monoisotopic_mass": 53413.0 }, "refseq": { "ac": "NP_190162", "name": "Nucleotidyltransferase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190162" }, "gene_names": [ { "name": "NTP5", "type": "recommended", "evidence": [ { "id": "F4J6R3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6R3" } ] } ], "protein_names": [ { "name": "Nucleotidyltransferase family protein", "type": "synonym", "evidence": [ { "id": "NP_190162", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190162" }, { "id": "F4J6R3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J6R3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J6R3", "url": "https://www.uniprot.org/uniprotkb/F4J6R3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "NTP5", "url": "https://www.uniprot.org/uniprotkb/F4J6R3", "locus": {} } ], "crossref": [ { "id": "F4J6R3", "url": "https://alphafold.ebi.ac.uk/entry/F4J6R3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G45760", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G45760", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd05402", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05402", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "823719", "url": "https://www.ncbi.nlm.nih.gov/gene/823719", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G45760", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G45760", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IVICQIK", "url": "https://omabrowser.org/oma/group/IVICQIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12271:SF134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12271:SF134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22600", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190162", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190162", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G45760", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G45760", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J6R3", "url": "https://www.uniprot.org/uniprotkb/F4J6R3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6R3-1", "url": "https://www.uniprot.org/uniprotkb/F4J6R3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6R4", "url": "https://www.uniprot.org/uniprotkb/F4J6R4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J6R4-1", "url": "https://www.uniprot.org/uniprotkb/F4J6R4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFRKNQAGEKNVSSKGIQKKVKNTMSIASKRYNIDSYILLDLDKVLDDAYSSFRPVSADYNTRKELVKNLNAMAIDIFGKSEESSPVLEAYGSFAMNTFSSQKDLDVSINFSSGTSEFYREKKLEILTRFATKLRSLEGQGFVRNVVPILSARVPIVRFCDQGTGIECDLTVESKDGILTSQIIRIISQIDDRFQKLCLLIKHWARAHGVNNASHNTLNSISITMLVAHHLQTQSPPILPPFSTLFKDGIDPPIVEKRTQKFLNWGQRNQESLGRLFATFFIKVEDFTDVARNFARVFSDYGAEKIYSSINRTVDDILEFLNGKVAGEHLTQKLFSQQTVVEPIPPVSPQQPHKKRVCLEKGYRAVGGISHGREETHETSRGKRKRSGGNWGCRFSGGEEPMPVGLWNEYSRSLDMPTPPPHYDKLLYKKVPLKTVELMCGHCSGANRHHPHIGLTSQKPEPPLMTRGLHSQV", "length": 474, "header": "tr|F4J6R3-1|F4J6R3_ARATH Isoform 1 of Nucleotidyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN=NTP5 PE=4 SV=1 CANONICAL=F4J6R3-1" }, "isoforms": [ { "isoform_ac": "F4J6R3-1", "url": "https://www.uniprot.org/uniprotkb/F4J6R3/entry#F4J6R3-1", "sequence": { "sequence": "MDFRKNQAGEKNVSSKGIQKKVKNTMSIASKRYNIDSYILLDLDKVLDDAYSSFRPVSADYNTRKELVKNLNAMAIDIFGKSEESSPVLEAYGSFAMNTFSSQKDLDVSINFSSGTSEFYREKKLEILTRFATKLRSLEGQGFVRNVVPILSARVPIVRFCDQGTGIECDLTVESKDGILTSQIIRIISQIDDRFQKLCLLIKHWARAHGVNNASHNTLNSISITMLVAHHLQTQSPPILPPFSTLFKDGIDPPIVEKRTQKFLNWGQRNQESLGRLFATFFIKVEDFTDVARNFARVFSDYGAEKIYSSINRTVDDILEFLNGKVAGEHLTQKLFSQQTVVEPIPPVSPQQPHKKRVCLEKGYRAVGGISHGREETHETSRGKRKRSGGNWGCRFSGGEEPMPVGLWNEYSRSLDMPTPPPHYDKLLYKKVPLKTVELMCGHCSGANRHHPHIGLTSQKPEPPLMTRGLHSQV", "length": 474, "header": "tr|F4J6R3-1|F4J6R3_ARATH Isoform 1 of Nucleotidyltransferase family protein OS=Arabidopsis thaliana OX=3702 GN=NTP5 PE=4 SV=1 CANONICAL=F4J6R3-1" }, "locus": { "chromosome": "3", "start_pos": 16801996, "end_pos": 16804759, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G45760.1", "url": "https://www.ensemblgenomes.org/id/AT3G45760.1" }, { "database": "Ensembl Peptide", "id": "AT3G45760.1", "url": "https://www.ensemblgenomes.org/id/AT3G45760.1" } ] } }, { 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Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J6S0", "url": "https://www.uniprot.org/uniprotkb/F4J6S0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": 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"NP_001154591", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154591" }, { "id": "F4J794", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J794/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J794", "url": "https://www.uniprot.org/uniprotkb/F4J794" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "DJC82", "url": "https://www.uniprot.org/uniprotkb/F4J794", "locus": {} } ], "crossref": [ { "id": "F4J794", "url": "https://alphafold.ebi.ac.uk/entry/F4J794", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45295:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154591", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154591", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G05345", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G05345", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J794", "url": "https://www.uniprot.org/uniprotkb/F4J794", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J794-1", "url": "https://www.uniprot.org/uniprotkb/F4J794-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MECLRVFASVPKISFFSNSRYSTSQRFIPSCRGKNREDPLSSSSPYSILGVEPSCSSSELKAAFRAKVKQYHPDVNKDGSNSDIMIRRIIQAYEMLTNYSRSEIIEGECLDPFDHPECEALDVFVNEVLCVGKRCSYPCFETASHVFSCDSSGTARAMSQGHGEDYRVQSAVNQCPRNCIHYVTPSQRIILEELLDSVVDKPYDCSAEAEFLYALIVKAKFENNRYQKPKKKQPESSGKHVDWF", "length": 244, "header": "tr|F4J794-1|F4J794_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DJC82 PE=1 SV=1 CANONICAL=F4J794-1" }, "isoforms": [ { "isoform_ac": "F4J794-1", "url": "https://www.uniprot.org/uniprotkb/F4J794/entry#F4J794-1", "sequence": { "sequence": "MECLRVFASVPKISFFSNSRYSTSQRFIPSCRGKNREDPLSSSSPYSILGVEPSCSSSELKAAFRAKVKQYHPDVNKDGSNSDIMIRRIIQAYEMLTNYSRSEIIEGECLDPFDHPECEALDVFVNEVLCVGKRCSYPCFETASHVFSCDSSGTARAMSQGHGEDYRVQSAVNQCPRNCIHYVTPSQRIILEELLDSVVDKPYDCSAEAEFLYALIVKAKFENNRYQKPKKKQPESSGKHVDWF", "length": 244, "header": "tr|F4J794-1|F4J794_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN=DJC82 PE=1 SV=1 CANONICAL=F4J794-1" }, "locus": { "chromosome": "3", "start_pos": 1522449, "end_pos": 1523889, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G05345.1", "url": "https://www.ensemblgenomes.org/id/AT3G05345.1" }, { "database": "Ensembl Peptide", "id": "AT3G05345.1", "url": "https://www.ensemblgenomes.org/id/AT3G05345.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 184, "start_aa": "Thr", "end_pos": 184, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr184", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J794", "url": "https://www.uniprot.org/uniprotkb/F4J794" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J794", "url": "https://www.uniprot.org/uniprotkb/F4J794" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G05345", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G05345", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4J794", "url": "https://www.uniprot.org/uniprotkb/F4J794" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J794-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 244, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J794-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J794" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J794", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J794" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 114, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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"total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J7B4-1", "uniprot_ac": "F4J7B4", "uniprot_id": "F4J7B4_ARATH", "mass": { "chemical_mass": 48902.0, "monoisotopic_mass": 48902.0 }, "refseq": { "ac": "NP_187196", "name": "cystatin-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187196" }, "gene_names": [ { "name": "F22F7.10", "type": "synonym", "evidence": [ { "id": "NP_187196", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187196" }, { "id": "F4J7B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J7B4" } ] }, { "name": "F22F7_10", "type": "synonym", "evidence": [ { "id": "NP_187196", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187196" }, { "id": "F4J7B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J7B4" } ] } ], "protein_names": [ { "name": "Cystatin-like protein", "type": "synonym", "evidence": [ { "id": "F4J7B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J7B4/entry#names_and_taxonomy" } ] }, { "name": "cystatin-like protein", "type": "synonym", "evidence": [ { "id": "NP_187196", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187196" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J7B4", "url": "https://www.uniprot.org/uniprotkb/F4J7B4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J7B4", "locus": {} } ], "crossref": [ { "id": "F4J7B4", "url": "https://alphafold.ebi.ac.uk/entry/F4J7B4", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G05450", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G05450", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "819710", "url": "https://www.ncbi.nlm.nih.gov/gene/819710", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G05450", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G05450", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YQAKVDW", "url": "https://omabrowser.org/oma/group/YQAKVDW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31228:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31228:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_187196", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187196", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G05450", "url": 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H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "Q2V3X0", "url": "https://www.uniprot.org/uniprotkb/Q2V3X0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan 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"date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4J7I5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J7I5" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "journal": "Mol. 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S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J7L7", "url": "https://www.uniprot.org/uniprotkb/F4J7L7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J7L7", "url": "https://www.uniprot.org/uniprotkb/F4J7L7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G18235", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G18235", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4J7L7", "url": "https://www.uniprot.org/uniprotkb/F4J7L7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J7L7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 105, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J7U9", "url": 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"" }, { "name": "asparagine-tRNA ligase activity", "id": "GO:0004816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004816", "evidence": [ { "database": "UniProtKB", "id": "F4J7U9", "url": "https://www.uniprot.org/uniprotkb/F4J7U9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J7U9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 603, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J7U9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J7U9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { 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"MGRAKAAAGTRARMSNTEAPTNDDPNKRPITGTWDGMDTKMLVDLKHIDVKEFIATCRLTYTDPENPKPSQGKLTFILNRKHYSKTLFEICDIYKTISVAQSEDIHIRSPVVRYVAKVLGSVLHFKPVIAAVTETELPLLFYGVKHLLPAYSDLPAPDTNVAAVLCDTLVKMKNTVLHQPGRASSLYLIRTNFTKPDSQLYQFLGRDGVTYYCRIPNQHITSFLSATNLAFEPDAQYLVRNPSGAVTRRRQTAAAQPTADHVVGNDDDHEDYADQAPSTHAQPYLLLPEDPAPYLVSSPPAGDDISQQMAWMIESTRKNNSMMHRMCRAILKIRPCVCTRGGGVDDGDREHRSKATEDRHAERLVPAAGASTSQTPPEQSLGHRLGRSRRQPGEQSSSESPTHHR", "length": 405, "header": "tr|F4J7V3-1|F4J7V3_ARATH Isoform 1 of Retrotransposon ORF-1 protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J7V3-1" }, "locus": { "chromosome": "3", "start_pos": 12529843, "end_pos": 12531235, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G30820.1", "url": "https://www.ensemblgenomes.org/id/AT3G30820.1" }, { "database": "Ensembl Peptide", "id": "AT3G30820.1", "url": "https://www.ensemblgenomes.org/id/AT3G30820.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J7V3", "url": "https://www.uniprot.org/uniprotkb/F4J7V3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of 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"end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J7V3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 405, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J7V3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J7V3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J7V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J7V3" }, { "id": "PF03078", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03078" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Arabidopsis retrotransposon Orf1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 94, "end_pos": 151, "start_aa": "Tyr", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 192, "end_pos": 194 }, { "start_pos": 319, "end_pos": 321 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 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"MESGLLLLAFLSTLVTVHQFHIIQAQEGISIDCGTTGSYVDSNNVTWVGDKGFVTTGESINITDVVKKPINTLRYFPTGQTNCYTNIPATKGRTTLVRTKFYYKNYDENYSPPSFDVVYDGKHRNSIAMTVDSLFSDEETFHYSEVIFAPANENISVCLVRTSPSDNPFISSIEVYRFDAGMYDDLGPEEGFILYKRNAYGATKLISYPLDPYGRLWSPKGSQDYPGLIDLTTSAPSIDITGALNKPPEIVMTKAMSGDGFIMSGLNLPSTLLPVYLALYFSEPQSLGRTQKRSFTVFLDGMQVGSHPIVPVFGKATQVVLRDIMASSESQLVFKSTDDSGLPTIISGLEVYSISNYKDHGSGGGGQSGSSNNGKFLLNLCKCFINNFFSWSIKQITSHPKIHKIFPSFSKQPKGNKLNLKKYYFEDSECVFIF", "length": 434, "header": "tr|F4J801-1|F4J801_ARATH Isoform 1 of Kinase-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J801-1" }, "isoforms": [ { "isoform_ac": "F4J801-1", "url": "https://www.uniprot.org/uniprotkb/F4J801/entry#F4J801-1", "sequence": { "sequence": 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reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J801", "url": "https://www.uniprot.org/uniprotkb/F4J801" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G46260", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G46260", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4J801", "url": "https://www.uniprot.org/uniprotkb/F4J801" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31900:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07723", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07723", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190837", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190837", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G52690", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G52690", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J826", "url": "https://www.uniprot.org/uniprotkb/F4J826", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J826-1", "url": "https://www.uniprot.org/uniprotkb/F4J826-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSTLETLILKYLALVDVPSPVCMKSLRTLHLDCVNFKHNESFSNLISGCPNLEDLFMYQYYPLDVVMNFIIVAPSLKRLVIIDYREAGGYVINAPTLKYLKIKGLSHCGFCLIENAPVLVEAKIRNLFYIYKEKILGSLKSAKRLSLDLSPLECPIDSIFYQLVHLEIYTCKEEWWNLLKLMLDSSPKLQVLKLIGKNLDFKKVGMVGGKWNEPKNVPECLLSQLKMFVWTSYHWESEVEKEVATYILKNARQLKNVSFSTRPIHSKEHNKLEEKCKMLKELDGVVRASSSCHLVFIE", "length": 299, "header": "tr|F4J826-1|F4J826_ARATH Isoform 1 of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J826-1" }, "isoforms": [ { "isoform_ac": "F4J826-1", "url": "https://www.uniprot.org/uniprotkb/F4J826/entry#F4J826-1", "sequence": { "sequence": "MFSTLETLILKYLALVDVPSPVCMKSLRTLHLDCVNFKHNESFSNLISGCPNLEDLFMYQYYPLDVVMNFIIVAPSLKRLVIIDYREAGGYVINAPTLKYLKIKGLSHCGFCLIENAPVLVEAKIRNLFYIYKEKILGSLKSAKRLSLDLSPLECPIDSIFYQLVHLEIYTCKEEWWNLLKLMLDSSPKLQVLKLIGKNLDFKKVGMVGGKWNEPKNVPECLLSQLKMFVWTSYHWESEVEKEVATYILKNARQLKNVSFSTRPIHSKEHNKLEEKCKMLKELDGVVRASSSCHLVFIE", "length": 299, "header": "tr|F4J826-1|F4J826_ARATH Isoform 1 of RNI-like superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J826-1" }, "locus": { "chromosome": "3", "start_pos": 19530736, "end_pos": 19531811, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G52690.1", "url": "https://www.ensemblgenomes.org/id/AT3G52690.1" }, { "database": "Ensembl Peptide", "id": "AT3G52690.1", "url": "https://www.ensemblgenomes.org/id/AT3G52690.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J826", "url": "https://www.uniprot.org/uniprotkb/F4J826" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J826", "url": "https://www.uniprot.org/uniprotkb/F4J826" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G52690", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G52690", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J826-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 299, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J826-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J826" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J826", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J826" }, { "id": "SM00579", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00579" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FBD", "eco_id": "ECO_0000259", "start_pos": 220, "end_pos": 298, "start_aa": "Glu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 257, "end_pos": 259 }, { "start_pos": 40, "end_pos": 42 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J868-1", "uniprot_ac": "F4J868", "uniprot_id": "F4J868_ARATH", "mass": { "chemical_mass": 51395.0, "monoisotopic_mass": 51395.0 }, "refseq": { "ac": "NP_191472", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191472" }, "gene_names": [], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_191472", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191472" }, { "id": "F4J868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J868/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J868", "url": "https://www.uniprot.org/uniprotkb/F4J868" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J868", "locus": {} } ], "crossref": [ { "id": "F4J868", "url": "https://alphafold.ebi.ac.uk/entry/F4J868", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G59130", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G59130", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "825082", "url": "https://www.ncbi.nlm.nih.gov/gene/825082", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G59130", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G59130", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF204", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF204", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_191472", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_191472", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G59130", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G59130", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J868", "url": "https://www.uniprot.org/uniprotkb/F4J868", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J868-1", "url": "https://www.uniprot.org/uniprotkb/F4J868-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQGQSSDKEVMPRCVVSDPAQPHNFSHRSEQKVKHDCFGCGKSDVPWEIRERPLYYYCTICDLEFHKNCLEYPTKVSSCRVCYKNVDIKYGQYSCNHEECFYVVHSKCATHGKIWDGEELEWEDEESEQAEDIAPYKKISGSLIEHCWHQHHFLKLEKYEGTRDSKKQCQACMRPVNPHDFYSCIECEFFIHEVCANLPRKLDHASHNHPLYMDPYPIYDRMHMNLGCSVCFRYSSGLKYRCKKDGCSEGGKQFQVDVNCILVPECFTHESHAEHRLFISTFGKDKRECQGCRWRHCQYLLQCVSCEFAICYTCATIPNELYHKYDDNPLSLCYGEKGVDGTYWCEVCEEELDPMEWFYTNTKQCTTIHRKCILGDNVYMKSGHTFEHSSDEVKVVCHGSSSRPICHTCHKYCPHPVYFKVYMPDGTEVDICSVNCHKI", "length": 440, "header": "tr|F4J868-1|F4J868_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J868-1" }, "isoforms": [ { "isoform_ac": "F4J868-1", "url": "https://www.uniprot.org/uniprotkb/F4J868/entry#F4J868-1", "sequence": { "sequence": "MGQGQSSDKEVMPRCVVSDPAQPHNFSHRSEQKVKHDCFGCGKSDVPWEIRERPLYYYCTICDLEFHKNCLEYPTKVSSCRVCYKNVDIKYGQYSCNHEECFYVVHSKCATHGKIWDGEELEWEDEESEQAEDIAPYKKISGSLIEHCWHQHHFLKLEKYEGTRDSKKQCQACMRPVNPHDFYSCIECEFFIHEVCANLPRKLDHASHNHPLYMDPYPIYDRMHMNLGCSVCFRYSSGLKYRCKKDGCSEGGKQFQVDVNCILVPECFTHESHAEHRLFISTFGKDKRECQGCRWRHCQYLLQCVSCEFAICYTCATIPNELYHKYDDNPLSLCYGEKGVDGTYWCEVCEEELDPMEWFYTNTKQCTTIHRKCILGDNVYMKSGHTFEHSSDEVKVVCHGSSSRPICHTCHKYCPHPVYFKVYMPDGTEVDICSVNCHKI", "length": 440, "header": "tr|F4J868-1|F4J868_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J868-1" }, "locus": { "chromosome": "3", "start_pos": 21860986, "end_pos": 21862807, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G59130.1", "url": 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"PF07035", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07035", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21029", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21029", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_187808", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187808", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G12010", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12010", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J8L1", "url": "https://www.uniprot.org/uniprotkb/F4J8L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J8L1-1", "url": "https://www.uniprot.org/uniprotkb/F4J8L1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSSAQAGVGSGALSHVYIHHPSLRCNIPESNGLFYDDANRLLICTTSSQVFSWETSPFNPDVPPSVDSISEGPILSIRFSLDKKAIAVQRSDCEIQLFNRETKQILNHKCKAGSESILGFFWSDSPLCDLAIVKTSGMDLFACDSMLNSLRLVETKKANVNWYIYTHETRLVLLASGLQCKTFNGFQLSTAGVVRLPRFEMTMARSESNSKPILSAGDLHLVTVYGRIYCLQVDREAMLLHLYRFYRDAVVQQGSLPIYSSKLSVNVVDNLLLVHQIDAKVVIIYDLFVDSRAPVSAPLPLLWRGYQVSETSSQAVNKEIESSESSTSNENIVMYEDGWTFLVPDLILDQTNKVLWKIHLDLEAISASSSDRTSLLEFLQRRKLEANKAKQLCLGIARAIILERRPATQVTQAIDVLVTAYSYSVKAGTYKEIKNENATASTPTPGASPDSERHRQSGSNIDEEVEMNLSSGSQENMFCADEQQESQLSSPAISPDELYKFVFTSVEEMMVEESEYLVAIITEFLRSISAEKLKVDLNIYVMTIKLLAYSKRFAELSLFTTNKIIEPSKEVAFQLLDSGRQNIRVRKLGLDMLRQLSLHHDYISSLVQDGYYLEALRYAQKHKVTSVRSSMFLEAAFASNDMQHLAAILRVLSELIPGFKETSEYYTFYGLLNDTSSSVAV", "length": 682, "header": "tr|F4J8L1-1|F4J8L1_ARATH Isoform 1 of C18orf8 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J8L1-1" }, "isoforms": [ { "isoform_ac": "F4J8L1-1", "url": "https://www.uniprot.org/uniprotkb/F4J8L1/entry#F4J8L1-1", "sequence": { "sequence": "MNSSAQAGVGSGALSHVYIHHPSLRCNIPESNGLFYDDANRLLICTTSSQVFSWETSPFNPDVPPSVDSISEGPILSIRFSLDKKAIAVQRSDCEIQLFNRETKQILNHKCKAGSESILGFFWSDSPLCDLAIVKTSGMDLFACDSMLNSLRLVETKKANVNWYIYTHETRLVLLASGLQCKTFNGFQLSTAGVVRLPRFEMTMARSESNSKPILSAGDLHLVTVYGRIYCLQVDREAMLLHLYRFYRDAVVQQGSLPIYSSKLSVNVVDNLLLVHQIDAKVVIIYDLFVDSRAPVSAPLPLLWRGYQVSETSSQAVNKEIESSESSTSNENIVMYEDGWTFLVPDLILDQTNKVLWKIHLDLEAISASSSDRTSLLEFLQRRKLEANKAKQLCLGIARAIILERRPATQVTQAIDVLVTAYSYSVKAGTYKEIKNENATASTPTPGASPDSERHRQSGSNIDEEVEMNLSSGSQENMFCADEQQESQLSSPAISPDELYKFVFTSVEEMMVEESEYLVAIITEFLRSISAEKLKVDLNIYVMTIKLLAYSKRFAELSLFTTNKIIEPSKEVAFQLLDSGRQNIRVRKLGLDMLRQLSLHHDYISSLVQDGYYLEALRYAQKHKVTSVRSSMFLEAAFASNDMQHLAAILRVLSELIPGFKETSEYYTFYGLLNDTSSSVAV", "length": 682, "header": "tr|F4J8L1-1|F4J8L1_ARATH Isoform 1 of C18orf8 OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J8L1-1" }, "locus": { "chromosome": "3", "start_pos": 3820352, "end_pos": 3825765, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12010.1", "url": "https://www.ensemblgenomes.org/id/AT3G12010.1" }, { "database": "Ensembl Peptide", "id": "AT3G12010.1", "url": "https://www.ensemblgenomes.org/id/AT3G12010.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 445, "start_aa": "Thr", "end_pos": 445, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr445", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 431, "end_pos": 431, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Tyr431" }, { "start_pos": 443, "end_pos": 443, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr443" }, { "start_pos": 445, "end_pos": 445, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr445" }, { "start_pos": 449, "end_pos": 449, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser449" }, { "start_pos": 452, "end_pos": 452, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser452" }, { "start_pos": 550, "end_pos": 550, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Tyr550" }, { "start_pos": 551, "end_pos": 551, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ], "site_lbl": "Ser551" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J8L1", "url": "https://www.uniprot.org/uniprotkb/F4J8L1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J8L1", "url": "https://www.uniprot.org/uniprotkb/F4J8L1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "F4J8L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8L1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT3G12010", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12010", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287A4H7-1", "protein_name": "Regulator of MON1-CCZ1", "gene_name": "RMC1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGEENYYLELCERPVHFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMEDKGEVKCIKFSLENKILAVQRTSKTVDFSNFIPDSSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKSQNINVNWYMYCPESAVILLSTTVLGNVLQPFYFRAGTMSKLPKFEIELPAAPKSTKLNLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKLHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGTVTLHHPVLPARSIQPYQIPAAGPAPVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRRDCKMVILSVCAQMLTESDRATLPVIATVFDKLNQEYKKYLDAEQSYTMAMEAGQSRSSPLLRRPVRTQAVVDQSDMYTHVLSAFTEKKETPHKFVVAVLMEYIRSLNQFQITVQHYLHELVIKTLVQHNLFYTLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDHMLFYTIFRFFEQRNQRLRGNPGFTPGEHCEEHVAFFKQVFGDQALMRPATF", "length": 657 }, "evidence": [ { "id": "F4J8L1", "url": "https://omabrowser.org/oma/group/F4J8L1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "E1BHW7-1", "protein_name": "Regulator of MON1-CCZ1", "gene_name": "RMC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGEEDYYLELCERPVHFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMEDKGEVKCIKFSLENKILAVQRTSKTVDFSNFIPDSSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRNLKLLKSQNINVNWYMYCPEGSVILLSTTVLGNVLQPFYFRAGTMSKLPKFEIELPAAPKSTKLSLSERDIAMATIYGQLYVLFLRHHSRTSNSAGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIRLRGEFDGSVTLHHPVLPARSIQPYQIPAAGPAPVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRKECKMVILSVCSQMLTESDRATLPVIATVFDKLNQEYKKYLDAEQNYTMAVEAGQSRSGPLLRRPVRTQAVVDQSDMYTHVLSVFTEKKETPHKFVIAVLMEYIRSLNQFQITVQHYLHELVIRTLVQHSLFSTLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDHMLFYTIFRFFEQRNQRLRGNPSFTPGEHCEEHVAFFKQVFGDQALMRPTTF", "length": 657 }, "evidence": [ { "id": "F4J8L1", "url": "https://omabrowser.org/oma/group/F4J8L1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VC42-1", "protein_name": "Regulator of MON1-CCZ1 complex", "gene_name": "Rmc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGGEDYYLELCERPVQFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMDDRGEVKCIKFSLENKILAVQRTAKAVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVMPEKRSLKLLKSHNINVNWYTYCPESAVILLSTTVLENVLQPFHFRAGTMSKLPKFEIELPAAPKSTKLSLSERDIAMATIYGQLYILFLRHHSRTSNSTGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIRLRGEFDGTVTFHHPVLPARSIQPYEIPLAGPAAVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRKECKAVVLSVCSQMLSESDRATLPVIATVFDKLNHEYKKYLDADQSYTMAVEAGQSRSNPPLKRPVRTQAVVDQSDVYTQVLSPFVENKEMPHKFVIAVLMEYIRSLNQFQIPVQHYLHELVIKTLVQHNLFYMLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAARQTDDVMLFYTIFRFFEQRNQRLRGNPNFTPGEHCEEHVAFFKQVFGEQALMRPTTF", "length": 657 }, "evidence": [ { "id": "F4J8L1", "url": "https://omabrowser.org/oma/group/F4J8L1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96DM3-1", "protein_name": "Regulator of MON1-CCZ1 complex", "gene_name": "RMC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGEEDYYLELCERPVQFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMDDKGEVKCIKFSLENKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVLPEKRSLKLLKSHNLNVNWYMYCPESAVILLSTTVLENVLQPFHFRAGTMSKLPKFEIELPAAPKSTKPSLSERDIAMATIYGQLYVLFLRHHSRTSNSTGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVVVHHQDTETSVIFDIKLRGEFDGSVTFHHPVLPARSIQPYQIPITGPAAVTSQSPVPCKLYSSSWIVFQPDIIISASQGYLWNLQVKLEPIVNLLPDKGRLMDFLLQRKECKMVILSVCSQMLSESDRASLPVIATVFDKLNHEYKKYLDAEQSYAMAVEAGQSRSSPLLKRPVRTQAVLDQSDVYTHVLSAFVEKKEMPHKFVIAVLMEYIRSLNQFQIAVQHYLHELVIKTLVQHNLFYMLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAAKQTEDNMLFYTIFRFFEQRNQRLRGSPNFTPGEHCEEHVAFFKQIFGDQALMRPTTF", "length": 657 }, "evidence": [ { "id": "F4J8L1", "url": "https://omabrowser.org/oma/group/F4J8L1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VRX1-1", "protein_name": "Regulator of MON1-CCZ1 complex", "gene_name": "Bulli", "tax_id": 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"sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J8S5-1", "uniprot_ac": "F4J8S5", "uniprot_id": "F4J8S5_ARATH", "mass": { "chemical_mass": 30802.0, "monoisotopic_mass": 30802.0 }, "refseq": { "ac": "NP_001189926", "name": "tubulin-tyrosine ligase", "summary": "", "url": 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"AT3G18535", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G18535", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "5008009", "url": "https://www.ncbi.nlm.nih.gov/gene/5008009", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G18535", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G18535", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MSAILGC", "url": "https://omabrowser.org/oma/group/MSAILGC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "NP_001189926", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189926", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G18535", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G18535", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J8S5", "url": "https://www.uniprot.org/uniprotkb/F4J8S5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J8S5-1", "url": "https://www.uniprot.org/uniprotkb/F4J8S5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLELGEGVMEKLVSPSGEDMNSRAQQNWKNVTAEVTSNYSRITFYLFATTVVITILVGSIFVLWFDTRNVGTLHKLLYVFLSAATIPYIGLLFICLCNDVPVPSYRLGAEGRFGIYLATMVVIYCISYSIEDFDVMMEVSFLVIMSIIGAVTIVQLHSPAEDLNSSRTTFILFLGTMSAILGCVAKDSWMSLSGSLCFFMVVMCIIKTNCLAADHFEEKQRERRRHRHRLPHPHPHPHPHPHPHPHPHPHPHPHPHPHPEPLLSVSFPHVDS", "length": 273, "header": "tr|F4J8S5-1|F4J8S5_ARATH Isoform 1 of Tubulin-tyrosine ligase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J8S5-1" }, "isoforms": [ { "isoform_ac": "F4J8S5-1", "url": "https://www.uniprot.org/uniprotkb/F4J8S5/entry#F4J8S5-1", "sequence": { "sequence": 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Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J8S5", "url": "https://www.uniprot.org/uniprotkb/F4J8S5" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4J8S5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J8S5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J8S5", "url": "https://www.uniprot.org/uniprotkb/F4J8S5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G18535", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G18535", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J8S5", "url": "https://www.uniprot.org/uniprotkb/F4J8S5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", 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"header": "tr|F4J8W8-1|F4J8W8_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J8W8-1" }, "locus": { "chromosome": "3", "start_pos": 9140039, "end_pos": 9141094, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G25090.1", "url": "https://www.ensemblgenomes.org/id/AT3G25090.1" }, { "database": "Ensembl Peptide", "id": "AT3G25090.1", "url": "https://www.ensemblgenomes.org/id/AT3G25090.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, 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Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J8W8", "url": "https://www.uniprot.org/uniprotkb/F4J8W8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J8W8", "url": "https://www.uniprot.org/uniprotkb/F4J8W8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J8X6-1", "uniprot_ac": "F4J8X6", "uniprot_id": "F4J8X6_ARATH", "mass": { "chemical_mass": 64387.0, "monoisotopic_mass": 64387.0 }, "refseq": { "ac": "NP_001189969", "name": "Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189969" }, "gene_names": [], "protein_names": [ { "name": "Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein", "type": "synonym", "evidence": [ { "id": "NP_001189969", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189969" }, { "id": "F4J8X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J8X6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J8X6", "url": "https://www.uniprot.org/uniprotkb/F4J8X6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J8X6", "locus": {} } ], "crossref": [ { "id": "F4J8X6", "url": "https://alphafold.ebi.ac.uk/entry/F4J8X6", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G25150", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G25150", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00590", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00590", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00780", "url": 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] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G25150", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G25150", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR10693", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10693", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10693:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10693:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02136", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02136", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001189969", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189969", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G25150", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G25150", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J8X6", "url": "https://www.uniprot.org/uniprotkb/F4J8X6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J8X6-1", "url": "https://www.uniprot.org/uniprotkb/F4J8X6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNFSVLLYINSKATFFSSSSIFLFSRRSLFFSRFSCKTLTSAIAKEAFLRSSLRNFPVNRQLRLFQFLDRFFITSICAYLLRESSSHLAFELDTDTHTAMAMLGAQQVPAAACTPDMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGYGVISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRRTFSQTFFLAPQETGYFVLNDMFRFIDEGTVVHGNQIPVNNVQAPVNTYQDTAAAKEIPDDFVQEKYVQENHAVKQTEVLSKSINEPEKVFTPSEDEQVSAAEEALVTETVNEAPIEVQKVGESDSRTGEIPKRSYASIVKVMKENAAPMSASRTPTKVEPKKQEDQAIHIPLPTPLSEKSDSGANVAVNENNQENERALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFESASSMQSAIEASPVMLNGHKVVVEEKRSTARGNYRGRSTFGVNTGYRNEGGRGRGSFGGGRGGYGRTDFNGYGNNRGNNRGGYANRANGDGGGFPRANGNNGRVRRGGGNDANRATKPVDDAPRVSVAA", "length": 587, "header": "tr|F4J8X6-1|F4J8X6_ARATH Isoform 1 of Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J8X6-1" }, "isoforms": [ { "isoform_ac": "F4J8X6-1", "url": "https://www.uniprot.org/uniprotkb/F4J8X6/entry#F4J8X6-1", "sequence": { "sequence": "MNFSVLLYINSKATFFSSSSIFLFSRRSLFFSRFSCKTLTSAIAKEAFLRSSLRNFPVNRQLRLFQFLDRFFITSICAYLLRESSSHLAFELDTDTHTAMAMLGAQQVPAAACTPDMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGYGVISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRRTFSQTFFLAPQETGYFVLNDMFRFIDEGTVVHGNQIPVNNVQAPVNTYQDTAAAKEIPDDFVQEKYVQENHAVKQTEVLSKSINEPEKVFTPSEDEQVSAAEEALVTETVNEAPIEVQKVGESDSRTGEIPKRSYASIVKVMKENAAPMSASRTPTKVEPKKQEDQAIHIPLPTPLSEKSDSGANVAVNENNQENERALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFESASSMQSAIEASPVMLNGHKVVVEEKRSTARGNYRGRSTFGVNTGYRNEGGRGRGSFGGGRGGYGRTDFNGYGNNRGNNRGGYANRANGDGGGFPRANGNNGRVRRGGGNDANRATKPVDDAPRVSVAA", "length": 587, "header": "tr|F4J8X6-1|F4J8X6_ARATH Isoform 1 of Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J8X6-1" }, "locus": { "chromosome": "3", "start_pos": 9157078, "end_pos": 9160100, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G25150.2", "url": "https://www.ensemblgenomes.org/id/AT3G25150.2" }, { "database": "Ensembl Peptide", "id": "AT3G25150.2", "url": "https://www.ensemblgenomes.org/id/AT3G25150.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 423, "start_aa": "Thr", "end_pos": 423, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr423", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, 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"length": 1081, "header": "tr|F4J910-1|F4J910_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4J910-1" }, "isoforms": [ { "isoform_ac": "F4J910-1", "url": "https://www.uniprot.org/uniprotkb/F4J910/entry#F4J910-1", "sequence": { "sequence": 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"length": 1081, "header": "tr|F4J910-1|F4J910_ARATH Isoform 1 of ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4J910-1" }, "locus": { "chromosome": "3", "start_pos": 9263795, "end_pos": 9268972, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G25510.1", "url": "https://www.ensemblgenomes.org/id/AT3G25510.1" }, { "database": "Ensembl Peptide", "id": "AT3G25510.1", "url": "https://www.ensemblgenomes.org/id/AT3G25510.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J910", "url": "https://www.uniprot.org/uniprotkb/F4J910" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J910", "url": "https://www.uniprot.org/uniprotkb/F4J910" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G25510", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G25510", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4J910", "url": "https://www.uniprot.org/uniprotkb/F4J910" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F4J910", "url": "https://www.uniprot.org/uniprotkb/F4J910" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ADP binding", "id": "GO:0043531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043531", "evidence": [ { "database": "UniProtKB", "id": "F4J910", "url": "https://www.uniprot.org/uniprotkb/F4J910" } ], "pmid": "" }, { "name": "NAD+ nucleosidase activity, cyclic ADP-ribose generating", "id": "GO:0061809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061809", "evidence": [ { "database": "UniProtKB", "id": "F4J910", "url": "https://www.uniprot.org/uniprotkb/F4J910" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" }, { "start_pos": 599, "end_pos": 601, "annotation": "n_glycosylation_sequon" }, { "start_pos": 610, "end_pos": 612, "annotation": "n_glycosylation_sequon" }, { "start_pos": 634, "end_pos": 636, "annotation": "n_glycosylation_sequon" }, { "start_pos": 647, "end_pos": 649, "annotation": "n_glycosylation_sequon" }, { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" }, { "start_pos": 706, "end_pos": 708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 743, "end_pos": 745, "annotation": "n_glycosylation_sequon" }, { "start_pos": 754, "end_pos": 756, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16301", "name": "", "equation": "NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "O23530-2", "O48573-1", "F4HT77-1", "F4I902-1", "F4J339-1", "F4JNA9-1", "F4KHI3-1", "Q0WSX8-1", "Q9XGM3-1", "Q9C5Q9-1", "Q9C7X0-1", "Q9FT77-1", "F4I594-1", "F4JNB7-1", "F4JT80-1", "F4JWM0-1", "F4KHH8-1", "F4KIF3-1", "Q9CAK1-1", "Q9FHF0-1", "Q9SZ66-1", "F4JT78-1", "F4JT82-1", "O49471-1", "O82500-1", "Q9FI14-1", "Q9SCZ2-1", "Q9LUJ8-1", "Q9SYC9-1", "A0A1P8AT27-1", "A0A1P8B6A5-1", "A0A1P8B6H3-1", "Q9SW60-1", 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11697:SF230", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11697:SF230", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154657", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154657", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G31402", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G31402", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J920", "url": "https://www.uniprot.org/uniprotkb/F4J920", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J920-1", "url": "https://www.uniprot.org/uniprotkb/F4J920-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J921", "url": "https://www.uniprot.org/uniprotkb/F4J921", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J921-1", "url": "https://www.uniprot.org/uniprotkb/F4J921-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDNAGKCIRSDAFITDGFCRWNNFKSFPEHVGGVDSFHNNVVMKCENLTKQGLAFRGHYKSENSANKGNFVELLKYTADQNEVVKVKSVIEEIDHNVFGLLVDESADVSDKEQMTLVFRFFDKSGIVKERFLSIIHVKETSAISLKSAIDDLFAKYRLNIKKGRGQGYDGEIGASCKRKDLIREKHRKKILEGIINGEISTRTWLNQEISLQRPGYTRWNSHYITLLRLTKMYFSIIKKFDDHFNEVNTELLICAASLSPIDAFYEFDHSKLVRLSKFYQVDFSLGEFISIEKELSIYIDTVRNDERFSNLKNLGDIAQKVVETRKHLSYPFGYRLLKLVLILHVATATVERCFSAMKIRSPVLNYQGDDFSGEAMESKEKKRSSVYRNGIE", "length": 393, "header": "tr|F4J921-1|F4J921_ARATH Isoform 1 of General transcription factor 2-related zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J921-1" }, "isoforms": [ { "isoform_ac": "F4J920-1", "url": "https://www.uniprot.org/uniprotkb/F4J921/entry#F4J920-1", "sequence": { "sequence": "MRDNAGKCIRSDAFITDGFCRWNNFKSFPEHVGGVDSFHNNVVMKCENLTKQGLAFRGHYKSENSANKGNFVELLKLNIKKGRGQGYDGEIGASCKRKDLIREKHRKKILEGIINGEISTRTWLNQEISLQRPGYTRWNSHYITLLRLTKMYFSIIKKFDDHFNEVNTELLICAASLSPIDAFYEFDHSKLVRLSKFYQVDFSLGEFISIEKELSIYIDTVRNDERFSNLKNLGDIAQKVVETRKHLSYPFGYRLLKLVLILHVATATVERCFSAMKIRSPVLNYQGDDFSGEAMESKEKKRSSVYRNGIE", "length": 311, "header": "tr|F4J920-1|F4J921_ARATH Computationally mapped isoform of General transcription factor 2-related zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J921-1" }, "locus": { "chromosome": "3", "start_pos": 12770931, "end_pos": 12773539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G31402.2", "url": "https://www.ensemblgenomes.org/id/AT3G31402.2" }, { "database": "Ensembl Peptide", "id": "AT3G31402.2", "url": "https://www.ensemblgenomes.org/id/AT3G31402.2" } ] } }, { "isoform_ac": "F4J921-1", "url": "https://www.uniprot.org/uniprotkb/F4J921/entry#F4J921-1", "sequence": { "sequence": "MRDNAGKCIRSDAFITDGFCRWNNFKSFPEHVGGVDSFHNNVVMKCENLTKQGLAFRGHYKSENSANKGNFVELLKYTADQNEVVKVKSVIEEIDHNVFGLLVDESADVSDKEQMTLVFRFFDKSGIVKERFLSIIHVKETSAISLKSAIDDLFAKYRLNIKKGRGQGYDGEIGASCKRKDLIREKHRKKILEGIINGEISTRTWLNQEISLQRPGYTRWNSHYITLLRLTKMYFSIIKKFDDHFNEVNTELLICAASLSPIDAFYEFDHSKLVRLSKFYQVDFSLGEFISIEKELSIYIDTVRNDERFSNLKNLGDIAQKVVETRKHLSYPFGYRLLKLVLILHVATATVERCFSAMKIRSPVLNYQGDDFSGEAMESKEKKRSSVYRNGIE", "length": 393, "header": "tr|F4J921-1|F4J921_ARATH Isoform 1 of General transcription factor 2-related zinc finger protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J921-1" }, "locus": { "chromosome": "3", "start_pos": 12770931, "end_pos": 12773539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G31402.1", "url": "https://www.ensemblgenomes.org/id/AT3G31402.1" }, { "database": "Ensembl Peptide", "id": "AT3G31402.1", "url": "https://www.ensemblgenomes.org/id/AT3G31402.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J920", "url": "https://www.uniprot.org/uniprotkb/F4J920" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J920", "url": "https://www.uniprot.org/uniprotkb/F4J920" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G31402", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G31402", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J921", "url": "https://www.uniprot.org/uniprotkb/F4J921" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J921-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 393, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J921-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J921" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J921", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J921" }, { "id": "PF14291", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14291" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ZMYM1-like RNase-like", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 87, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J922-1", "uniprot_ac": "F4J922", "uniprot_id": "F4J922_ARATH", "mass": { "chemical_mass": 38971.0, "monoisotopic_mass": 38971.0 }, "refseq": { "ac": "NP_189728", "name": "zinc knuckle (CCHC-type) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189728" }, "gene_names": [], "protein_names": [ { "name": "Zinc knuckle (CCHC-type) family protein", "type": "synonym", "evidence": [ { "id": "F4J922", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J922/entry#names_and_taxonomy" } ] }, 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"https://www.uniprot.org/uniprotkb/F4J922-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATDKAICRRLLYYLFVTPLVTVYREFAGKVVCFFTAHSLVVISTVESTIHRDATSSASGNVLLKFRFTIPESTNLISLKPPNHFPLRFYQPLSQMADNLRRAVQDINLGVDDIPFALPEDIVNHAVAENRFILFGRPVMPRRQNLRSIVASMPRIWGQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILLQRWEPQIPLFPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGACLIQNGGEEQADDDDDDEEHPQTYHN", "length": 336, "header": "tr|F4J922-1|F4J922_ARATH Isoform 1 of Zinc knuckle (CCHC-type) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J922-1" }, "isoforms": [ { "isoform_ac": "F4J922-1", "url": "https://www.uniprot.org/uniprotkb/F4J922/entry#F4J922-1", "sequence": { "sequence": "MATDKAICRRLLYYLFVTPLVTVYREFAGKVVCFFTAHSLVVISTVESTIHRDATSSASGNVLLKFRFTIPESTNLISLKPPNHFPLRFYQPLSQMADNLRRAVQDINLGVDDIPFALPEDIVNHAVAENRFILFGRPVMPRRQNLRSIVASMPRIWGQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWAFNDWMILLQRWEPQIPLFPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFGACLIQNGGEEQADDDDDDEEHPQTYHN", "length": 336, "header": "tr|F4J922-1|F4J922_ARATH Isoform 1 of Zinc knuckle (CCHC-type) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J922-1" }, "locus": { "chromosome": "3", "start_pos": 12795861, "end_pos": 12796871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G31430.1", "url": "https://www.ensemblgenomes.org/id/AT3G31430.1" }, { "database": "Ensembl Peptide", "id": "AT3G31430.1", "url": "https://www.ensemblgenomes.org/id/AT3G31430.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of 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Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J922", "url": "https://www.uniprot.org/uniprotkb/F4J922" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J922", "url": "https://www.uniprot.org/uniprotkb/F4J922" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G31430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G31430", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J922-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 336, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J922-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J922" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J922", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J922" }, { "id": "PF14111", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14111" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4283", "eco_id": "ECO_0000259", "start_pos": 129, "end_pos": 207, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4J922", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J922" }, { "id": "PF14392", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14392" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc knuckle CX2CX4HX4C", "eco_id": "ECO_0000259", "start_pos": 265, "end_pos": 312, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], 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} ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J923", "url": "https://www.uniprot.org/uniprotkb/F4J923" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J923", "locus": {} } ], "crossref": [ { "id": "F4J923", "url": "https://alphafold.ebi.ac.uk/entry/F4J923", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G31900", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G31900", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822923", "url": "https://www.ncbi.nlm.nih.gov/gene/822923", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038718", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038718", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044567", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044567", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G31900", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G31900", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR45821", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45821", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45821:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45821:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_189731", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189731", 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family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J923-1" }, "isoforms": [ { "isoform_ac": "F4J923-1", "url": "https://www.uniprot.org/uniprotkb/F4J923/entry#F4J923-1", "sequence": { "sequence": "MDAKRKFSQEKDLYQNDDKRKKVVALENQETGGSCVDGNVAHWFSKTKFNGLVDVPIVYLALEENVVKNDLTLRSSLKHVIIGSISGGSNSGKGLAKDLYLDVNELVEVQVRSDKEINMMKDKGKAIFDLNEAIWPKDEPISNTFEKSRATLTNCEHSWIWKQGFGDMCYHLQGSSVATGFRSNICKDIKMRVPKDSFSGTGIFPHPLHKMIMKPHHFEILNFLCKNLVVENSNGCIIDQTPLSEKTFLMISFIYVGVERLEKKFGELKVNDLVLLDFYSTKASAKQFSNIVSDNSGAEASDSCRDILLNILSVVVFGRGTDPRNEMMSFLKVVSRIKTPHKVLLTGSLYQNNIKEVFNILDVAFPEFLKHNQIGKNFRKFLNVEADGPSTNL", "length": 393, "header": "tr|F4J923-1|F4J923_ARATH Isoform 1 of ATP-dependent helicase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J923-1" }, "locus": { "chromosome": "3", "start_pos": 12875071, "end_pos": 12877422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G31900.1", "url": "https://www.ensemblgenomes.org/id/AT3G31900.1" }, { "database": "Ensembl Peptide", "id": "AT3G31900.1", "url": "https://www.ensemblgenomes.org/id/AT3G31900.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J923", "url": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J925-1", "uniprot_ac": "F4J925", "uniprot_id": "F4J925_ARATH", "mass": { "chemical_mass": 55778.0, "monoisotopic_mass": 55778.0 }, "refseq": { "ac": "NP_189737", "name": "nucleic acid-binding/zinc ion-binding protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189737" }, "gene_names": [], "protein_names": [ { "name": "Nucleic acid-binding/zinc ion-binding protein", "type": "synonym", "evidence": [ { "id": "F4J925", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J925/entry#names_and_taxonomy" } ] }, { "name": "nucleic acid-binding/zinc ion-binding protein", "type": "synonym", "evidence": [ { "id": "NP_189737", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189737" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", 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"https://www.ncbi.nlm.nih.gov/protein/NP_189737", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G31950", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G31950", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J925", "url": "https://www.uniprot.org/uniprotkb/F4J925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J925-1", "url": "https://www.uniprot.org/uniprotkb/F4J925-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEDSESTESTMSIESDPSECPENADDHDDLLSSEEANHVEWMITEDGELFAVPTENATEEQANEILNNMLSMFYVPSTDEEGSLGVLNLGTIGEHGLELEEANGDLFDVPVIQVDGAFGEMNEYGANNEYEMLMLTGIDEENENGAIENEIENELEHAIDQLIAKCAQDYVPNGSQAILMITNPSEVDSCWENEMFKGNEPSDDEGNGRSKGKMIDKAGEDERQKGKRAAELEMELEKAKDQRIIGVNPHSLGIGYGINSKVKPRIRATARKSVGRKLATPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCPYVAPNAGERSLRGVGPLMTAGAEEKCLNEGMPSFLWVRQLYNYDKEVGNGQRARTGKYGQEWAQMGKDGRVVANYQPWSRSQLSLGAEVGVTPVAICHHAIVRRHLSPVGAAAFRTCGSGRKAFPNLVKFALGRGNSVRDLRIIACGRENLTMSKESSTVLEKLCPKPKKLSELSNP", "length": 507, "header": "tr|F4J925-1|F4J925_ARATH Isoform 1 of Nucleic acid-binding/zinc ion-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J925-1" }, "isoforms": [ { "isoform_ac": "F4J925-1", "url": "https://www.uniprot.org/uniprotkb/F4J925/entry#F4J925-1", "sequence": { "sequence": "MAEDSESTESTMSIESDPSECPENADDHDDLLSSEEANHVEWMITEDGELFAVPTENATEEQANEILNNMLSMFYVPSTDEEGSLGVLNLGTIGEHGLELEEANGDLFDVPVIQVDGAFGEMNEYGANNEYEMLMLTGIDEENENGAIENEIENELEHAIDQLIAKCAQDYVPNGSQAILMITNPSEVDSCWENEMFKGNEPSDDEGNGRSKGKMIDKAGEDERQKGKRAAELEMELEKAKDQRIIGVNPHSLGIGYGINSKVKPRIRATARKSVGRKLATPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCPYVAPNAGERSLRGVGPLMTAGAEEKCLNEGMPSFLWVRQLYNYDKEVGNGQRARTGKYGQEWAQMGKDGRVVANYQPWSRSQLSLGAEVGVTPVAICHHAIVRRHLSPVGAAAFRTCGSGRKAFPNLVKFALGRGNSVRDLRIIACGRENLTMSKESSTVLEKLCPKPKKLSELSNP", "length": 507, "header": "tr|F4J925-1|F4J925_ARATH Isoform 1 of Nucleic acid-binding/zinc ion-binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4J925-1" }, "locus": { "chromosome": "3", "start_pos": 12950113, "end_pos": 12952593, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G31950.1", "url": "https://www.ensemblgenomes.org/id/AT3G31950.1" }, { "database": "Ensembl Peptide", "id": "AT3G31950.1", "url": "https://www.ensemblgenomes.org/id/AT3G31950.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J925", "url": "https://www.uniprot.org/uniprotkb/F4J925" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J925", "url": "https://www.uniprot.org/uniprotkb/F4J925" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G31950", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G31950", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J925", "url": "https://www.uniprot.org/uniprotkb/F4J925" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J925-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 507, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J925-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J925" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4J934-1", "uniprot_ac": "F4J934", "uniprot_id": "F4J934_ARATH", "mass": { "chemical_mass": 56287.0, "monoisotopic_mass": 56287.0 }, "refseq": { "ac": "NP_974390", "name": "SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974390" }, "gene_names": [], "protein_names": [ { "name": "SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein", "type": "synonym", "evidence": [ { "id": "NP_974390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974390" }, { "id": "F4J934", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J934/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4J934", "url": "https://www.uniprot.org/uniprotkb/F4J934" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4J934", "locus": {} } ], "crossref": [ { "id": "F4J934", "url": "https://alphafold.ebi.ac.uk/entry/F4J934", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G46450", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G46450", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "823795", "url": "https://www.ncbi.nlm.nih.gov/gene/823795", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F4J934", "url": "https://www.ebi.ac.uk/intact/interactors/id:F4J934*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G46450", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G46450", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WNPFRVL", "url": "https://omabrowser.org/oma/group/WNPFRVL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47041", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47041", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47041:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47041:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00650", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00650", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_974390", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_974390", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G46450", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G46450", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4J934", "url": "https://www.uniprot.org/uniprotkb/F4J934", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J934-1", "url": "https://www.uniprot.org/uniprotkb/F4J934-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SN94", "url": "https://www.uniprot.org/uniprotkb/Q9SN94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9SN94-1", "url": "https://www.uniprot.org/uniprotkb/Q9SN94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDNSGRSRNSMMATVSSGKELLPKRSLVAAIPRAVQQTISKHVSFGSNGRFGSGTARNAAVFLLKIAVLEVVRRVSKAKCPHLWNSLQALQCLCYPPLKWIQRWAPFKELINAMQLLCVIVMQMLSRPLLVITIAEALTDQSELKQEASGGTNSHASSESESQSDSQTLQSPSDIRIEDEAPLPVISQDWLRKLYEELEKQRLSLPERLNEDELHRFYRVSNGDFTSLLSSIKKTIHWRETYRILSEEELETWSSLLFWHGYDKNQRPCLIVRLGLAFLKLPSHERPRFAQAIISQVEHGVLHLLTPENSELTVLVDCEGLSPLRIPMQMMRSCSSILQDHFPNRLGCLFIIRLPPVVRVISQTFIQILRPTTRKKLRIEGETFHRVLSEYLQTLPSYLGSNCNCKRCSNLNEQDPPQPQTHPRRKRRSSSETEKLDDSHWSYNAQTPDLSYEDEPSLNICSQVLRTAVVFLLMIWLFGALLAGFADPESRPF", "length": 494, "header": "tr|F4J934-1|F4J934_ARATH Isoform 1 of SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J934-1" }, "isoforms": [ { "isoform_ac": "F4J934-1", "url": "https://www.uniprot.org/uniprotkb/F4J934/entry#F4J934-1", "sequence": { "sequence": "MGDNSGRSRNSMMATVSSGKELLPKRSLVAAIPRAVQQTISKHVSFGSNGRFGSGTARNAAVFLLKIAVLEVVRRVSKAKCPHLWNSLQALQCLCYPPLKWIQRWAPFKELINAMQLLCVIVMQMLSRPLLVITIAEALTDQSELKQEASGGTNSHASSESESQSDSQTLQSPSDIRIEDEAPLPVISQDWLRKLYEELEKQRLSLPERLNEDELHRFYRVSNGDFTSLLSSIKKTIHWRETYRILSEEELETWSSLLFWHGYDKNQRPCLIVRLGLAFLKLPSHERPRFAQAIISQVEHGVLHLLTPENSELTVLVDCEGLSPLRIPMQMMRSCSSILQDHFPNRLGCLFIIRLPPVVRVISQTFIQILRPTTRKKLRIEGETFHRVLSEYLQTLPSYLGSNCNCKRCSNLNEQDPPQPQTHPRRKRRSSSETEKLDDSHWSYNAQTPDLSYEDEPSLNICSQVLRTAVVFLLMIWLFGALLAGFADPESRPF", "length": 494, "header": "tr|F4J934-1|F4J934_ARATH Isoform 1 of SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J934-1" }, "locus": { "chromosome": "3", "start_pos": 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cytosolic factor family protein / phosphoglyceride transfer family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J934-1" }, "locus": { "chromosome": "3", "start_pos": 17092879, "end_pos": 17095639, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G46450.3", "url": "https://www.ensemblgenomes.org/id/AT3G46450.3" }, { "database": "Ensembl Peptide", "id": "AT3G46450.3", "url": "https://www.ensemblgenomes.org/id/AT3G46450.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 11, "end_pos": 11, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SN94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SN94" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser11" }, { "start_pos": 15, "end_pos": 15, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SN94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SN94" } ], "site_lbl": "Thr15" }, { "start_pos": 17, "end_pos": 17, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9SN94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SN94" } ], "site_lbl": "Ser17" }, { "start_pos": 18, "end_pos": 18, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J934", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J934" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "Q9SN94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SN94" }, { "database": "PubMed", "id": "18463617", "url": 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"Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4J934", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J934" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9SN94", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9SN94" } ], "reference": [ { "type": 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"MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPSNSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMFQLLSGKGEKLNLTDRNREDLCKYIDQYLKELYHHKNKTINQSHIEPGESSGATNAMTPTSVVENPNFNHLSHNQYQYQQQFGYPILVQDGIYNPSQIQNQHEEWLDDHMMNHSKEISHPLMDDNNFYYQQP", "length": 249, "header": "tr|Q9M9L1-1|F4J9K3_ARATH Computationally mapped isoform of MADS-box transcription factor family protein OS=Arabidopsis thaliana OX=3702 GN=AGL45 PE=4 SV=1 CANONICAL=F4J9K3-1" }, "locus": { "chromosome": "3", "start_pos": 1751406, "end_pos": 1752355, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G05860.3", "url": "https://www.ensemblgenomes.org/id/AT3G05860.3" }, { "database": "Ensembl Peptide", "id": "AT3G05860.3", "url": "https://www.ensemblgenomes.org/id/AT3G05860.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 85, "end_pos": 85, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9M9L1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9M9L1" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser85" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F4J9W8-1", "url": "https://www.uniprot.org/uniprotkb/F4J9W8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHN3", "url": "https://www.uniprot.org/uniprotkb/Q9LHN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9LHN3-1", "url": "https://www.uniprot.org/uniprotkb/Q9LHN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVMDIDFNEYKLRCELHGHDDDVRGICVCNDENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSFVGPLAWIPPTDEYPEGRLVSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVAIDNEDIVSSSVDQTLKRWRNGQLVESWDAHQSPIQAVIRLPSGELVSGSSDASLKLWKGKTSLQTLSGHTDTVRGLAVMPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHSSGLIVSASEDRHAKIWKDGVCVQSLEHPGCIWDAKFLETGDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYKLSRKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVAYAWNMKEQRWDKIGEVVDGPDGVADRPIHEGVQYDFVFDVDIGDGEPIRKLPYNRSDNPYDAADKWLLKENLPFAYRQQIVEFILQNSGQKDFNFNPSFRDPFTGANAYVPGQASRTAATPAKPLYKHIPKRGVLVFDAAQYDGILKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNILKDTSHYHSTNFADMDIALLLKVLQAWPPAMMFPATDIVRMLVLHHHGASLLIKHVENNNDLLLDLIKKVTEDSALPANLLTTVRVLVNLFKNSSFHYWLQTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLIEKKDQEGQAQVLSAALQVPEEEAADVDSKFRSLVAIGSLMLEGLVKKIAIDFDVESIAKSAKASKEAKIAEVGADIDLVIRQ", "length": 760, "header": "tr|F4J9W8-1|F4J9W8_ARATH Isoform 1 of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J9W8-1" }, "isoforms": [ { "isoform_ac": "F4J9W8-1", 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OX=3702 GN= PE=1 SV=1 CANONICAL=F4J9W8-1" }, "locus": { "chromosome": "3", "start_pos": 6501682, "end_pos": 6508553, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G18860.2", "url": "https://www.ensemblgenomes.org/id/AT3G18860.2" }, { "database": "Ensembl Peptide", "id": "AT3G18860.2", "url": "https://www.ensemblgenomes.org/id/AT3G18860.2" } ] } }, { "isoform_ac": "Q9LHN3-1", "url": "https://www.uniprot.org/uniprotkb/F4J9W8/entry#Q9LHN3-1", "sequence": { "sequence": "MVMDIDFNEYKLRCELHGHDDDVRGICVCNDENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSFVGPLAWIPPTDEYPEGRLVSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVAIDNEDIVSSSVDQTLKRWRNGQLVESWDAHQSPIQAVIRLPSGELVSGSSDASLKLWKGKTSLQTLSGHTDTVRGLAVMPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHSSGLIVSASEDRHAKIWKDGVCVQSLEHPGCIWDAKFLETGDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYKLSRKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVAYAWNMKEQRWDKIGEVVDGPDGVADRPIHEGVQYDFVFDVDIGDGEPIRKLPYNRSDNPYDAADKWLLKENLPFAYRQQIVEFILQNSGQKDFNFNPSFRDPFTGANAYVPGQASRTAATPAKPLYKHIPKRGVLVFDAAQYDGILKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNILKDTSHYHSTNFADMDIALLLKVLQAWPPAMMFPATDIVRMLVLHHHGASLLIKHVENNNDLLLDLIKKVTEDSALPANLLTTVRVLVNLFKNSSFHYWLQTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLIEKKDQEGQAQVLSAALQVAEEEAADVDSKFRSLVAIGSLMLEGLVKKIAIDFDVESIAKSAKASKEAKIAEVGADIDLVIRQ", "length": 760, "header": "tr|Q9LHN3-1|Q9LHN3_ARATH Computationally mapped isoform of Transducin family protein / WD-40 repeat family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4J9W8-1" }, "locus": { "chromosome": "3", "start_pos": 6501668, "end_pos": 6508553, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G18860.1", "url": "https://www.ensemblgenomes.org/id/AT3G18860.1" }, { "database": "Ensembl Peptide", "id": "AT3G18860.1", "url": "https://www.ensemblgenomes.org/id/AT3G18860.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 479, "start_aa": "Thr", "end_pos": 479, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr479", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 339, "end_pos": 339, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr339" }, { "start_pos": 340, "end_pos": 340, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J9W8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J9W8" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser340" }, { "start_pos": 343, "end_pos": 343, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4J9W8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J9W8" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr343" }, { "start_pos": 344, "end_pos": 344, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser344" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4J9W8", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4J9W8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4J9W8" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4J9W8", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q9LHN3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LHN3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "pathway": [ { "id": "ath:AT3G18860", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G18860", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1RWJ7-1", "protein_name": "Phospholipase A-2-activating protein", "gene_name": "PLAA", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGDGGVYRLRCSLLGHEQDVRGITRGLFPEGGFVSVSRDRTARLWTPDGLNRGFTEMHCMRGHSNFVSCVCIIPPSDLYPRGLIATGGNDHNICVFTVDNTAPLYVLKGHTNTVCSLSSGKFGTLLSGSWDTTCKVWLNDRCMMTLQGHTAAIWAVKILPEQGLMLTGSADKTIKLWKAGRCERTYAGHEDCVRGLAILSEMEFLSCSNDASVRRWHISGECLHVYYGHTNYIYSVSVFPHCKDFITTGEDRSLRIWKQGECVQTIRLPAQSVWCCCVLDNDDIVVGASDGIIRVFTKSLERTASAEEIQAFENELSQASIDPKTGDLGDINADDLPGKEHLKDPGMRDGQTRLIKDNGKVEAYQWSVSEGRWIKIGDVVGSSGGTQQTSGKVLFEGKEYDYVFTIDVNESGPSYKLPYNISDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTKGQAPLNTNTEFSDPFTGAGRYVPGSSSLSNTAPAADPFTGAGRYVPGSASNVVAPVGGHDPYTGMGAYQSAKAENIYFPKKDAVTFDQANPTQILGKLKELNGNAAEEQKLTEDDLIILEKLLSATCNTSAEMPTAQQIQTLWKAINWPEDIVFPALDILRLSVRHPIVNENFCGEKAHVQFIHLLLKFLNPQGKPANQLLALRALCNCFVSQAGQKLLMEQRDEIMTQAIEVKSGNNKNVHIALATLTLNYAVCLHKVNNIEGKAQCLSVISTVMEVVKDLEAVFRLLVALGTLISDDKNAVQLAKSLGVDSQIKKYVSVSEPAKVKECCRFVLNLL", "length": 794 }, "evidence": [ { "id": "F4J9W8", "url": "https://omabrowser.org/oma/group/F4J9W8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A5G2R9S8-1", "protein_name": "Phospholipase A-2-activating protein", "gene_name": "PLAA", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MASGATRYRLSCSLPGHELDVRGLVCCLYPPGAFVSVSRDRTTRLWVPDSPNRGFTEMHCMSGHSNFVSCVCIIPSSDMYPHGLIATGGNDHNICIFSLESPAPLYVLKGHKNTVCSLSSGKFGTLLSGSWDTTAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKAGRCERTFSGHEDCVRGLAILSETEFLSCANDASIRKWQITGECLEVFYGHTNYIYSISVFPNCKDFVTTGEDRSLRIWKHGECAQTIRLPAQSIWCCCVLNNGDIVVGASDGIIRVFTESEDRTANAEEIKAFERELSQATIDSKTGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGEKVEAYQWSVSERRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNISDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTQGQMLGLGNTNFSDPFTGGGRYVPGSSSGSSNTLPVADPFTGGGRYVPGSANMGTMMAGVDPFTGNSAYQSAASKTVNIYFPKKEAVTFDQANPTQILGKLKELNGTASEDKKLTEEDLVLLEKILSLICNNSSEKPTAQQLQTLWKAVNWPEDIVFPALDILRLSIKHPSVNENFCNEKEGTQFSSHLINLLNPKGKPANQLLALRTFCNCFVGKAGQKLMMSQRESLMSQAIELKSGSNKNIHIALATLTLNYSVCFHKDHNIEGKAQCLSVISTVLEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKFASVSEPAKVSECCRLILNLL", "length": 796 }, "evidence": [ { "id": "F4J9W8", "url": "https://omabrowser.org/oma/group/F4J9W8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "G3HH63-1", "protein_name": "Phospholipase A-2-activating protein", "gene_name": "Plaa", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASGAARYRLSCSLPGHELDVRGLVCCLYPPGAFVSVSRDRTTRLWAPDSPNRGFTEMHCMSGHSNFVSCVCIIPSSEIYPHGLIATGGNDHNICIFSLDSPMPLYILKGHKDTVCSLSSGKFGTLLSGSWDTTAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKAGRCERTFSGHEDCVRGLAILSETEFLSCANDASIRRWQITGECLEVYYGHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTESQDRTASVEEIKAFERELSQATIDSKTGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGERVEAYQWSVSDGRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNVSEDPWLAAYNFLQKNDLNPMFLDQVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPSNTVQAADPFTGAGRYMPGSAGMGTSMAGVDPFTGSSAYRSAASKTVNIYFPKKEALTFDQANPIQILGKLKELNGTAPEDKKLTEDDLVLLEKILSLICNNSSEKPTAQQLQILWKAINWPEDIVFPALDILRLSIKHPSVNENFCNEKEGDQFSSHLIHLLNPKGKPANQLLALRTFCNCFVSQAGQKLMMSQRESLMSQAIELKSGSNKNIHIALATLTLNYSVCFHKDHNIEGKAQCLSVISTILEVVQDLEATFRLLVALGTLISDDSNAIQLAKSLGVDSQIKKYASVSEPAKVSECCRLILNLL", "length": 795 }, "evidence": [ { "id": "F4J9W8", "url": "https://omabrowser.org/oma/group/F4J9W8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P27612-1", "protein_name": "Phospholipase A-2-activating protein", "gene_name": "Plaa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASGASRYRLSCSLPGHELDVRGLVCCLYPPGAFVSVSRDRTTRLWAPDSPNRGFTEMHCMSGHSNFVSCVCIIPSSDIYPHGLIATGGNDHNICIFSLDSPMPLYILKGHKDTVCSLSSGKFGTLLSGSWDTTAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKAGRCERTFLGHEDCVRGLAILSETEFLSCANDASIRRWQITGECLEVYFGHTNYIYSISVFPNSKDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLENGDIVVGASDGIIRVFTESEERTASAEEIKAFERELSQATIDSKTGDLGDINAEQLPGREHLSEPGTREGQTRLIRDGERVEAYQWSVSDGRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNVSDDPWLVAYNFLQKNDLNPMFLDQVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPSNTVQTADPFTGAGRYMPGSAGMDTTMTGVDPFTGNSAYRSAASKTVNIYFPKKEALTFDQANPTQILGKLKELNGTAPEEKKLTEDDLVLLEKILSLICNNSSEKPTAQQLQILWKAINWPEDIVFPALDILRLSIKHPNVNENFCNEKGDQFSSHLINLLNPKGKPANQLLALRTFCNCFVSQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLTLNYSVCFHKDHNIEGKAQCLSVISTILEVVQDLEATFRLLVALGTLISDDSNAIQLAKSLGVDSQIKKYVSVSEPAKVSECCRLVLHLL", "length": 794 }, "evidence": [ { "id": "F4J9W8", "url": "https://omabrowser.org/oma/group/F4J9W8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P54319-1", "protein_name": "Phospholipase A-2-activating protein", "gene_name": "Plaa", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASGAARYRLSCSLPGHELDVRGLVCCLYPPGAFVSVSRDRTTRLWAPDSPNRGFTEMHCMSGHSNFVSCVCIIPSSDIYPHGLIATGGNDHNICIFSLDSPMPLYILKGHKDTVCSLSSGKFGTLLSGSWDTTAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKAGRCERTFSGHEDCVRGLAILSETEFLSCANDASIRRWQITGECLGVYYGHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTEADERTASAEEIKAFERELSQATIDSKTGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGERVEAYQWSVSDGRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNVSDDPWLVAYNFLQKNDLNPMFLDQVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPSNTVQTADPFTGAGRYMPGSAGMDTTMAGVDPFTGNSAYRSAASKTVNIYFPKKEALTFDQANPTQILGKLKELNGSAPEEKKLTEDDLVLLEKILSLICGNASEKPTAQQLQVLWKAINWPEDIVFPALDILRLSIKHPSVNENFCNEKEGDQFSSHLINLLNPKGKPANQLLALRTFCNCFVSQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLTLNYSVCFHKDHNIEGKAQCLSVISTILEVVQDLEATFRLLVALGTLISDDSNAIQLAKSLGVDSQIKKYASVSEPAKVSECCRLILNLL", "length": 795 }, "evidence": [ { "id": "F4J9W8", "url": "https://omabrowser.org/oma/group/F4J9W8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9VPY2-1", "protein_name": "Phospholipase A2 activator protein, isoform B", "gene_name": "Plap", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEPSLDNYKLSCELLGHSMDVRAVAVGPPTPEGRQTILSGSRDKSTKVWKPHGNEYLESLTLQDHKNFISYICFLESERWICTASNDATICIYKQDGFVPLLTLKGHESTVCALSAGLEPRSLISGSWDKTARVWTISEAGDVSFVALEGHEAAVWAVATLKEQRKYVTGGADRNIYYWNAKGEKLRLLKGHTDCVRGVMGLDANTLLSCGNDAVLRFWNEDGECVREMNGHSNYIYSMARNEALGDQVVVSCGEDSTLRMWNVITGDELGAPIIHPGISVWSVTCLQNGDIVTGCSDGVVRVFSHVPARQASEAVLKAFDLVVATRKSQINEEIGGVKKTDLPGPEALLSNGTREGQTKMVRHADGSVKCYTWTLGNWNLVGDVTGATGGTQSNSGKKLHEGKEYDFVFSVDISDTEPPIKLPYNRSDDPWQAAQTFIHRHSLPQAYLDQVANFIIKNSEGPVLMEQAPTGYQDPFTGGSRYVPGSSNTNMGSGGNVDPFTGASSYSTASSNAQSQVDVNFVRSGDKHFPVSNYRIFDTCDAKKVLEKMIEFNGKLSLPDGRVGEEVLLAVIKLADQSPELDLTSLEALAILLKWPASMQFPVLDILRLAVRNEAIFSVLNNSHNFLATVIPQLSGSAPNQLMVVRCLANIMSHAAGRQNVMSRLAEIIDLVGAIKTGSANLQIAVATFYLNLTISQTLDVAKSEVCHVVTSGIVELLKWAKDLEACYRSMQAIGNLTTTSCGQETIAQVVSVDYVMDKLRELTITPQDKNFSKVNSVGQALLAVF", "length": 787 }, "evidence": [ { "id": "F4J9W8", "url": "https://omabrowser.org/oma/group/F4J9W8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y263-1", "protein_name": "Phospholipase A-2-activating protein", "gene_name": "PLAA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSGATRYRLSCSLRGHELDVRGLVCCAYPPGAFVSVSRDRTTRLWAPDSPNRSFTEMHCMSGHSNFVSCVCIIPSSDIYPHGLIATGGNDHNICIFSLDSPMPLYILKGHKNTVCSLSSGKFGTLLSGSWDTTAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTVKLWKAGRCERTFSGHEDCVRGLAILSETEFLSCANDASIRRWQITGECLEVYYGHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTESEDRTASAEEIKAFEKELSHATIDSKTGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGEKVEAYQWSVSEGRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTKGQMLGLGNPSFSDPFTGGGRYVPGSSGSSNTLPTADPFTGAGRYVPGSASMGTTMAGVDPFTGNSAYRSAASKTMNIYFPKKEAVTFDQANPTQILGKLKELNGTAPEEKKLTEDDLILLEKILSLICNSSSEKPTVQQLQILWKAINCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL", "length": 795 }, "evidence": [ { "id": "F4J9W8", "url": "https://omabrowser.org/oma/group/F4J9W8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ubiquitin recycling", "id": "GO:0010992", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010992", "evidence": [ { "database": "UniProtKB", "id": "F4J9W8", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F4J9W8", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4J9W8", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4J9W8", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "F4J9W8", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin binding", "id": "GO:0043130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043130", "evidence": [ { "database": "UniProtKB", "id": "F4J9W8", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" }, { "start_pos": 512, "end_pos": 514, "annotation": "n_glycosylation_sequon" }, { "start_pos": 633, "end_pos": 635, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4J9W8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 760, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4J9W8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4J9W8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4J9W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" }, { "id": "PS51394", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51394" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PFU", "eco_id": "ECO_0000259", "start_pos": 361, "end_pos": 457, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F4J9W8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4J9W8" }, { "id": "PS51396", "database": "PROSITE", "url": 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"https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G32150", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822979", "url": "https://www.ncbi.nlm.nih.gov/gene/822979", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G32150", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G32150", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_189758", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189758", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G32150", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G32150", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JA78", "url": "https://www.uniprot.org/uniprotkb/F4JA78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JA78-1", "url": "https://www.uniprot.org/uniprotkb/F4JA78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], 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Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JA78", "url": "https://www.uniprot.org/uniprotkb/F4JA78" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JA78", "url": "https://www.uniprot.org/uniprotkb/F4JA78" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G32150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G32150", "resource": "KEGG Pathway" } ], 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JA79-1", "uniprot_ac": "F4JA79", "uniprot_id": "F4JA79_ARATH", "mass": { "chemical_mass": 17091.0, "monoisotopic_mass": 17091.0 }, "refseq": { "ac": "NP_189759", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189759" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4JA79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JA79/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_189759", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189759" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": 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protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JA79-1" }, "isoforms": [ { "isoform_ac": "F4JA79-1", "url": "https://www.uniprot.org/uniprotkb/F4JA79/entry#F4JA79-1", "sequence": { "sequence": "MENEGASTVCPLDPGNPLFLSGDGFEPASVLFPHAVFHFPLKDKKEAYDFMDKVVDKYRRLCDERQRLGLKRQMLEARISCVERKVRSMESDPFQWDWRNFDCAAKIPHMLRMYLRARGQVPCPVNAPVEVIPSDSEEDNDEEEDSNP", "length": 148, "header": "tr|F4JA79-1|F4JA79_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JA79-1" }, "locus": { "chromosome": "3", "start_pos": 13145440, "end_pos": 13145953, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G32160.1", "url": "https://www.ensemblgenomes.org/id/AT3G32160.1" }, { "database": "Ensembl Peptide", "id": "AT3G32160.1", "url": "https://www.ensemblgenomes.org/id/AT3G32160.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 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Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JA79", "url": "https://www.uniprot.org/uniprotkb/F4JA79" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JA79", "url": "https://www.uniprot.org/uniprotkb/F4JA79" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G32160", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G32160", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JA79", "url": "https://www.uniprot.org/uniprotkb/F4JA79" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"id": "F4JA80", "url": "https://alphafold.ebi.ac.uk/entry/F4JA80", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G32180", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G32180", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822985", "url": "https://www.ncbi.nlm.nih.gov/gene/822985", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021704", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021704", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G32180", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G32180", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PF11690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189760", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G32180", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G32180", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JA80", "url": "https://www.uniprot.org/uniprotkb/F4JA80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JA80-1", "url": "https://www.uniprot.org/uniprotkb/F4JA80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENEGASTVCPLDPGSPLFLSGDGFEPVGVLFPHAVFHFPSKEKKEAYDFMDKVVDKHRRLCDERQRLGLKNESEVDVKNEGSTSNPEPAVKEPVPEPLP", "length": 100, "header": "tr|F4JA80-1|F4JA80_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JA80-1" }, "isoforms": [ { "isoform_ac": "F4JA80-1", "url": "https://www.uniprot.org/uniprotkb/F4JA80/entry#F4JA80-1", "sequence": { "sequence": "MENEGASTVCPLDPGSPLFLSGDGFEPVGVLFPHAVFHFPSKEKKEAYDFMDKVVDKHRRLCDERQRLGLKNESEVDVKNEGSTSNPEPAVKEPVPEPLP", "length": 100, "header": "tr|F4JA80-1|F4JA80_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JA80-1" }, "locus": { "chromosome": "3", "start_pos": 13162413, "end_pos": 13162787, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G32180.1", "url": "https://www.ensemblgenomes.org/id/AT3G32180.1" }, { "database": "Ensembl Peptide", "id": "AT3G32180.1", "url": "https://www.ensemblgenomes.org/id/AT3G32180.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JA80", "url": "https://www.uniprot.org/uniprotkb/F4JA80" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JA80", "url": "https://www.uniprot.org/uniprotkb/F4JA80" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G32180", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G32180", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JA80", "url": "https://www.uniprot.org/uniprotkb/F4JA80" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JA80-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 100, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JA80-F1.pdb", "url_external": 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"MPSLRTSHRAGWFQQSFLRYKLLLGYKLLHWFKFQVLSDNSHINAHHSSRTNSELNDMIQYYERLLLDREQDVMAWKDKSSSLESDLRSSTEVKQKLEDQLENLSSKLMQSNGELQDQYQRYDKIQEELSNARGRLSESESNAYDLSNQLSKLQAKSASKARKEVKGHGIEWIQGAIVFIQTEKTRTELESDIKEYESNLLLLDQTHDEDFSEEQERSELKAVLAEKRSRLAALPSSSFNPQQFEEFFTESPPLSESGLDWTSPSDPVEPEVPIMSVVTPEPVATPPEILPSTNTVTVVIEDDDGSESGIPTEQPVTDVTDETETQSWTQSILSQLRLNSRWLRIRSGCVHLMGVVPL", "length": 358, "header": "tr|F4JA81-1|F4JA81_ARATH Isoform 1 of Myosin heavy chain-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JA81-1" }, "isoforms": [ { "isoform_ac": "F4JA81-1", "url": "https://www.uniprot.org/uniprotkb/F4JA81/entry#F4JA81-1", "sequence": { "sequence": 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"AT3G32280.1", "url": "https://www.ensemblgenomes.org/id/AT3G32280.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro 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"categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSDNSCPFVVEKSEVVLVKPSKPTPDVTLSLSTIDNDPNNEVILDILCVFSPNPYVRDHTNYHPASFIQLALSNALVYYYPLAGKLHRRTSDQTLQLDCTQGDGVPLIKATASCTLSSLNYLESGNHLEATYQLVPSHDTLKGCNLGYRPLALQITKFTCGGMTIGSVHSHTVCDGIGMAQFSQAILELAAGRAQPTVIPVWDRHMITSNQISTLCKLGNDKNNPKLVDVEKDCSSPDTPTEDMVREILNITSEDITKLKNIIIEDENLTNEKEKNMKITTVEVLAAYVWRARCRAMKLNPDTITDLVISVSIRSSIEPPLPEGYYGNAFTHASVALTAKELSKTPISRLVRLIKDAKRAALDNGYVCEQLREMENTMKLKLASKEIHGGVFMMLTDWRHLGLDQDVWGGLVNIIPLVPLTLPFLCVLLPASKAVPGKSGGVRVLTTLPRDAMAKFKEEIDAVLHP", "length": 468, "header": "tr|F4JAD2-1|F4JAD2_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JAD2-1" }, "isoforms": [ { "isoform_ac": "F4JAD2-1", "url": "https://www.uniprot.org/uniprotkb/F4JAD2/entry#F4JAD2-1", "sequence": { "sequence": 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Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JAD2", "url": "https://www.uniprot.org/uniprotkb/F4JAD2" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JAD2", "url": "https://www.uniprot.org/uniprotkb/F4JAD2" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G47170", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G47170", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JAD2", "url": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JAD4-1", "uniprot_ac": "F4JAD4", "uniprot_id": "F4JAD4_ARATH", "mass": { "chemical_mass": 37393.0, "monoisotopic_mass": 37393.0 }, "refseq": { "ac": "NP_190303", "name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190303" }, "gene_names": [], "protein_names": [ { "name": "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_190303", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190303" }, { "id": "F4JAD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JAD4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"Protein" ] } ], "sequence": { "sequence": "MSNSESYPPEFRPLMSEKSTETGLDRSKDIDIPVIDMEHLDMEKLREACKDWGIFHLENTGIPLTFMSQVKEITESVLSLPFEEKRTLFGVNSPLSYYWGTHTVSPSGKAVTRAPQESSGHLFEGINIPLASLSRLLALSCTDPKLESFRVVMEEYGKHVTRIIVTLFEAIIETLSLELSGDQKMGYLSESTGVIRVQRYPQCTESPGLEAHTDSSVISIINQDDVGGLEFMKDGEWFNVKPLASSFVVGLGDMMQVISDEEYKSVLHKVGKRMRKKERYSIVNFVFPDKDCMFNSTRYKPFKFSEFEAQVKLDVETHGSKVGLSRFLSNP", "length": 331, "header": "tr|F4JAD4-1|F4JAD4_ARATH Isoform 1 of 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JAD4-1" }, "isoforms": [ { "isoform_ac": "F4JAD4-1", "url": "https://www.uniprot.org/uniprotkb/F4JAD4/entry#F4JAD4-1", "sequence": { "sequence": 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2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JAF4-1" }, "isoforms": [ { "isoform_ac": "F4JAF4-1", "url": "https://www.uniprot.org/uniprotkb/F4JAF4/entry#F4JAF4-1", "sequence": { "sequence": "MDITVRISGLKSSNLIRITPRFSSSSRFRCSNNEPPRKGNESNAGGGGDKASTDWDKAWKNFKKQSKKSLFSQFNVDKYVTWNPPRSEFDLSEEVDPIKRTERSNLMLWTSPRFTLVGAIVIVSFLLLYTILAPVK", "length": 136, "header": "tr|F4JAF4-1|F4JAF4_ARATH Isoform 1 of 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JAF4-1" }, "locus": { "chromosome": "3", "start_pos": 19822679, "end_pos": 19823523, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G53470.2", "url": "https://www.ensemblgenomes.org/id/AT3G53470.2" }, { "database": "Ensembl Peptide", "id": "AT3G53470.2", "url": "https://www.ensemblgenomes.org/id/AT3G53470.2" } ] } }, { "isoform_ac": "Q9LFH1-1", "url": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46116", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46116:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46116:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_683557", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683557", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G12775", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12775", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JAZ0", "url": "https://www.uniprot.org/uniprotkb/F4JAZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JAZ0-1", "url": "https://www.uniprot.org/uniprotkb/F4JAZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNDSSNITNLFEGRDKGIGASSSDSDDDRAGSSTEQEEDESQNLVPESKPGSEGEKVGDIVRFGKDSYFVIDIFEKEIMELGDKVDLNYKRFKKFEAVDGGAPRDHHFYNYRCCYSSYLCVCASSTVDRLWGILERGLASREKEGVSFFVRTYKERKELMRVAVTVTDCYQNHNLYFFDLKFPKEYPYQAPSFYYHPYDLRLSTPEDQKSLRDKHCYNIVDVFLHIQEIVLMNTNKSCNQMLDILERPLAGFQDFVIGYFRKKGPLILRNMLQEFDMEEERDKKMFWKMYFAFEGNKVYCEQILNSDLKAELEKLKEKEYTLSDYYYGSSSSNYPTYTQRDDGIKKTSKSFWNKYLSVSFD", "length": 362, "header": "tr|F4JAZ0-1|F4JAZ0_ARATH Isoform 1 of Ubiquitin-conjugating enzyme family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JAZ0-1" }, "isoforms": [ { "isoform_ac": "F4JAZ0-1", "url": "https://www.uniprot.org/uniprotkb/F4JAZ0/entry#F4JAZ0-1", "sequence": { "sequence": "MSNDSSNITNLFEGRDKGIGASSSDSDDDRAGSSTEQEEDESQNLVPESKPGSEGEKVGDIVRFGKDSYFVIDIFEKEIMELGDKVDLNYKRFKKFEAVDGGAPRDHHFYNYRCCYSSYLCVCASSTVDRLWGILERGLASREKEGVSFFVRTYKERKELMRVAVTVTDCYQNHNLYFFDLKFPKEYPYQAPSFYYHPYDLRLSTPEDQKSLRDKHCYNIVDVFLHIQEIVLMNTNKSCNQMLDILERPLAGFQDFVIGYFRKKGPLILRNMLQEFDMEEERDKKMFWKMYFAFEGNKVYCEQILNSDLKAELEKLKEKEYTLSDYYYGSSSSNYPTYTQRDDGIKKTSKSFWNKYLSVSFD", "length": 362, "header": "tr|F4JAZ0-1|F4JAZ0_ARATH Isoform 1 of Ubiquitin-conjugating enzyme family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JAZ0-1" }, "locus": { "chromosome": "3", "start_pos": 4059772, "end_pos": 4060944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12775.1", "url": "https://www.ensemblgenomes.org/id/AT3G12775.1" }, { "database": "Ensembl Peptide", "id": "AT3G12775.1", "url": "https://www.ensemblgenomes.org/id/AT3G12775.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 166, "start_aa": "Thr", "end_pos": 166, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr166", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JAZ0", "url": "https://www.uniprot.org/uniprotkb/F4JAZ0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JAZ0", "url": "https://www.uniprot.org/uniprotkb/F4JAZ0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G12775", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12775", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JAZ0", "url": "https://www.uniprot.org/uniprotkb/F4JAZ0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin conjugating enzyme activity", "id": "GO:0061631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061631", "evidence": [ { "database": "UniProtKB", "id": "F4JAZ0", "url": "https://www.uniprot.org/uniprotkb/F4JAZ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JAZ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 362, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JAZ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JAZ0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 166 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 236, "end_pos": 238 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JAZ8-1", "uniprot_ac": "F4JAZ8", "uniprot_id": "F4JAZ8_ARATH", "mass": { "chemical_mass": 42192.0, "monoisotopic_mass": 42192.0 }, "refseq": { "ac": "NP_187891", "name": "COP9 signalosome complex-related / CSN complex-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187891" }, "gene_names": [], "protein_names": [ { "name": "COP9 signalosome complex-related / CSN complex-like protein", "type": "synonym", "evidence": [ { "id": "NP_187891", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187891" }, { "id": "F4JAZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JAZ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JAZ8", "url": "https://www.uniprot.org/uniprotkb/F4JAZ8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JAZ8", "locus": {} } ], "crossref": [ { "id": "F4JAZ8", "url": "https://alphafold.ebi.ac.uk/entry/F4JAZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G12850", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G12850", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820467", "url": "https://www.ncbi.nlm.nih.gov/gene/820467", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019585", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019585", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G12850", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G12850", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR14145", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14145", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14145:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14145:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_187891", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187891", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G12850", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G12850", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JAZ8", "url": "https://www.uniprot.org/uniprotkb/F4JAZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JAZ8-1", "url": "https://www.uniprot.org/uniprotkb/F4JAZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDIEGDDQLDLDVEAYSRNYEGRNLVLRLLHIAENSVGPMFTDDLELEALRLAYDLIRNDGIVCDMRLFTVIAEKIQGRLGEGYLLDEKWRLTKNNNFVKQDSILRNDLESATDELEKDRLALRQYWLHYHCGQMAIVFRPYPRQVQTIDAYMATLLVALETRNFGELPHRSVEQIAYCNVKRAYGFKIDCFKSLSNLLESKYQVTAEGNAVDTIVNPIGQVASHLENVIKPFGPCDYLIDVIKKLLAGHFTDCMTLLEKQRPRLLLDFYLRDHVDNLLSMMRDGGRLRVDSGGMVITESQVKRLMLEGKIKGRIEGQVFCPQMQVKSSEIDDSHEPPPCSVRSHLERVPRTDRIPKMIRKEDTSPL", "length": 367, "header": "tr|F4JAZ8-1|F4JAZ8_ARATH Isoform 1 of COP9 signalosome complex-related / CSN complex-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JAZ8-1" }, "isoforms": [ { "isoform_ac": "F4JAZ8-1", "url": "https://www.uniprot.org/uniprotkb/F4JAZ8/entry#F4JAZ8-1", "sequence": { "sequence": "MDIEGDDQLDLDVEAYSRNYEGRNLVLRLLHIAENSVGPMFTDDLELEALRLAYDLIRNDGIVCDMRLFTVIAEKIQGRLGEGYLLDEKWRLTKNNNFVKQDSILRNDLESATDELEKDRLALRQYWLHYHCGQMAIVFRPYPRQVQTIDAYMATLLVALETRNFGELPHRSVEQIAYCNVKRAYGFKIDCFKSLSNLLESKYQVTAEGNAVDTIVNPIGQVASHLENVIKPFGPCDYLIDVIKKLLAGHFTDCMTLLEKQRPRLLLDFYLRDHVDNLLSMMRDGGRLRVDSGGMVITESQVKRLMLEGKIKGRIEGQVFCPQMQVKSSEIDDSHEPPPCSVRSHLERVPRTDRIPKMIRKEDTSPL", "length": 367, "header": "tr|F4JAZ8-1|F4JAZ8_ARATH Isoform 1 of COP9 signalosome complex-related / CSN complex-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JAZ8-1" }, "locus": { "chromosome": "3", "start_pos": 4088374, "end_pos": 4090303, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G12850.1", "url": "https://www.ensemblgenomes.org/id/AT3G12850.1" }, { "database": "Ensembl Peptide", "id": "AT3G12850.1", "url": 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M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JB65", "url": 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"taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JB86", "url": "https://www.uniprot.org/uniprotkb/F4JB86" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JB86", "locus": {} } ], "crossref": [ { "id": "F4JB86", "url": "https://alphafold.ebi.ac.uk/entry/F4JB86", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G19515", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G19515", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd02619", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02619", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "821486", "url": "https://www.ncbi.nlm.nih.gov/gene/821486", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G19515", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G19515", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PANEAGN", "url": "https://omabrowser.org/oma/group/PANEAGN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12758", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12758", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12758:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12758:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05918", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05918", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001078188", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078188", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G19515", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G19515", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JB86", "url": "https://www.uniprot.org/uniprotkb/F4JB86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JB86-1", "url": "https://www.uniprot.org/uniprotkb/F4JB86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKLKDFEKRLRESTEKSQNLKDYLGIIEFSKTSIETKELGADLIPRYFQFYTSHSNQAFDAYKDIIEAVDVNLTVRVQAIRKLPLFCKDAPELVSKIIDVLVQCLAIDQQEQHEAVHETFMSLFQQDTLSDLINKLPEPRKLDLLEALAEISPHTTTLIASEMLPPIFELLKKYMPARNTVEKSDSRYVECLLYVFHHMAHKVPEATNSLCGYKVVPTQPSDRIGDDFSKLYKESTERLINLEDLIKASVEQLVQEMSDHDKAYLLFDSMSGDDKAILYMKRQDTKTELRTCINILAMTEVLHAEVPSFIGDTNVVKLSWKEATKPLAYTRALYTDLMYGIPPDIDAFHNFMDKLSEDLLNKLDMEGMCELEDDQVQALVGSSGLKQAQDTLPESRIFLHENPKVPCLFWRIRESTLLKLVTSKSWKKFLGFIRDQLFHLICWAYAASDLVSATRIMRNWEVEYIPLCPWYLCSFCRPEYLGEDENPEKEDDENPEKGHYCYGNDIEDCLLYIKQHGIPREICKKFDCKDWQPPNADDPHMHTTKLKSVRKIESMEEALLLLPHFPIGADLVVFKELWTVGEEIYYGPGTNSRGFRSYHAVIVSSIEIYKGEVVAICKMSNGTKVCDEGYVRVSLATTYMVVGASPKKKEHVRATSKPMHLLSEFIIIDIDENEKEKEREREKETESEEENPEDNQKGNPEHNPKEKSEEMQYPDFGASKFHNSLNEHIMPDSDKSLGNVSGEEIKMVTEGLTSLSKFGEKGPQERMHEPVEIVERGKRPANEAGNDVGTKKARTESSGCAHGI", "length": 805, "header": "tr|F4JB86-1|F4JB86_ARATH Isoform 1 of Apoptosis inhibitor OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JB86-1" }, "isoforms": [ { "isoform_ac": "F4JB86-1", "url": "https://www.uniprot.org/uniprotkb/F4JB86/entry#F4JB86-1", "sequence": { "sequence": "MEKLKDFEKRLRESTEKSQNLKDYLGIIEFSKTSIETKELGADLIPRYFQFYTSHSNQAFDAYKDIIEAVDVNLTVRVQAIRKLPLFCKDAPELVSKIIDVLVQCLAIDQQEQHEAVHETFMSLFQQDTLSDLINKLPEPRKLDLLEALAEISPHTTTLIASEMLPPIFELLKKYMPARNTVEKSDSRYVECLLYVFHHMAHKVPEATNSLCGYKVVPTQPSDRIGDDFSKLYKESTERLINLEDLIKASVEQLVQEMSDHDKAYLLFDSMSGDDKAILYMKRQDTKTELRTCINILAMTEVLHAEVPSFIGDTNVVKLSWKEATKPLAYTRALYTDLMYGIPPDIDAFHNFMDKLSEDLLNKLDMEGMCELEDDQVQALVGSSGLKQAQDTLPESRIFLHENPKVPCLFWRIRESTLLKLVTSKSWKKFLGFIRDQLFHLICWAYAASDLVSATRIMRNWEVEYIPLCPWYLCSFCRPEYLGEDENPEKEDDENPEKGHYCYGNDIEDCLLYIKQHGIPREICKKFDCKDWQPPNADDPHMHTTKLKSVRKIESMEEALLLLPHFPIGADLVVFKELWTVGEEIYYGPGTNSRGFRSYHAVIVSSIEIYKGEVVAICKMSNGTKVCDEGYVRVSLATTYMVVGASPKKKEHVRATSKPMHLLSEFIIIDIDENEKEKEREREKETESEEENPEDNQKGNPEHNPKEKSEEMQYPDFGASKFHNSLNEHIMPDSDKSLGNVSGEEIKMVTEGLTSLSKFGEKGPQERMHEPVEIVERGKRPANEAGNDVGTKKARTESSGCAHGI", "length": 805, "header": "tr|F4JB86-1|F4JB86_ARATH Isoform 1 of Apoptosis inhibitor OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JB86-1" }, "locus": { "chromosome": "3", "start_pos": 6766621, "end_pos": 6771169, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G19515.2", "url": "https://www.ensemblgenomes.org/id/AT3G19515.2" }, { "database": "Ensembl Peptide", "id": "AT3G19515.2", "url": "https://www.ensemblgenomes.org/id/AT3G19515.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 640, "end_pos": 640, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JB86", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JB86" } ], "site_lbl": "Tyr640" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JB86", "url": "https://www.uniprot.org/uniprotkb/F4JB86" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JB86", "url": "https://www.uniprot.org/uniprotkb/F4JB86" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G19515", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G19515", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F4JB86", "url": "https://www.uniprot.org/uniprotkb/F4JB86" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JB86", "url": "https://www.uniprot.org/uniprotkb/F4JB86" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of programmed cell death", "id": "GO:0043067", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043067", "evidence": [ { "database": "UniProtKB", "id": "F4JB86", "url": "https://www.uniprot.org/uniprotkb/F4JB86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 622, "end_pos": 624, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" }, { "start_pos": 740, "end_pos": 742, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JB86-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 805, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JB86-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JB86" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 640 ], "sequon_annotation_sites": [ { "start_pos": 622, "end_pos": 624 }, { "start_pos": 73, "end_pos": 75 }, { "start_pos": 740, "end_pos": 742 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JBC7-1", "uniprot_ac": "F4JBC7", "uniprot_id": "F4JBC7_ARATH", "mass": { "chemical_mass": 48705.0, "monoisotopic_mass": 48705.0 }, "refseq": { "ac": "NP_189233", "name": "HXXXD-type acyl-transferase family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189233" }, "gene_names": [], "protein_names": [ { "name": "HXXXD-type acyl-transferase family protein", "type": "synonym", "evidence": [ { "id": "NP_189233", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189233" }, { "id": "F4JBC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JBC7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JBC7", "url": "https://www.uniprot.org/uniprotkb/F4JBC7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JBC7", "locus": {} } ], "crossref": [ { "id": "F4JBC7", "url": "https://alphafold.ebi.ac.uk/entry/F4JBC7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G26040", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G26040", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "822201", "url": "https://www.ncbi.nlm.nih.gov/gene/822201", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G26040", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26040", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PEIMMNQ", "url": "https://omabrowser.org/oma/group/PEIMMNQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31623", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31623", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31623:SF122", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31623:SF122", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02458", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02458", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189233", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189233", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G26040", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G26040", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JBC7", "url": "https://www.uniprot.org/uniprotkb/F4JBC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JBC7-1", "url": "https://www.uniprot.org/uniprotkb/F4JBC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVDVVSRDIIKPSSPTPNHLKKFKLSLLEQLGPTIFGPMVFFYSANNSIKPTEQLQMLKKSLSETLTHFYPLAGRLKGNISIDCNDSGADFLEARVNSPLSNLLLEPSSDSLQQLIPTSVDSIETRTRLLLAQASFFECGSMSIGVCISHKLADATSIGLFMKSWAAISSRGSIKTIGAPVFDTVKIFPPGNFSETSPAPVVEPEIMMNQTLSKRFIFDSSSIQALQAKASSFEVNQPTRVEAVSALIWKSAMKATRTVSGTSKPSILANSVSLRSRVSPPFTKNSIGNLVSYFAAKAEEGINQTKLQTLVSKIRKAKQRFRDIHIPKLVGNPNATEIICSYQKEAGDMIASGDFDFYIFSSACRFGLYETDFGWGKPVWVGFPSVRQKNIVTLLDTKEAGGIEAWVNLNEQEMNLFEQDRELLQFASLNPSVIQPFLHVL", "length": 442, "header": "tr|F4JBC7-1|F4JBC7_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBC7-1" }, "isoforms": [ { "isoform_ac": "F4JBC7-1", "url": "https://www.uniprot.org/uniprotkb/F4JBC7/entry#F4JBC7-1", "sequence": { "sequence": "MRVDVVSRDIIKPSSPTPNHLKKFKLSLLEQLGPTIFGPMVFFYSANNSIKPTEQLQMLKKSLSETLTHFYPLAGRLKGNISIDCNDSGADFLEARVNSPLSNLLLEPSSDSLQQLIPTSVDSIETRTRLLLAQASFFECGSMSIGVCISHKLADATSIGLFMKSWAAISSRGSIKTIGAPVFDTVKIFPPGNFSETSPAPVVEPEIMMNQTLSKRFIFDSSSIQALQAKASSFEVNQPTRVEAVSALIWKSAMKATRTVSGTSKPSILANSVSLRSRVSPPFTKNSIGNLVSYFAAKAEEGINQTKLQTLVSKIRKAKQRFRDIHIPKLVGNPNATEIICSYQKEAGDMIASGDFDFYIFSSACRFGLYETDFGWGKPVWVGFPSVRQKNIVTLLDTKEAGGIEAWVNLNEQEMNLFEQDRELLQFASLNPSVIQPFLHVL", "length": 442, "header": "tr|F4JBC7-1|F4JBC7_ARATH Isoform 1 of HXXXD-type acyl-transferase family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JBC7-1" }, "locus": { "chromosome": "3", "start_pos": 9519741, "end_pos": 9521094, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26040.1", "url": "https://www.ensemblgenomes.org/id/AT3G26040.1" }, { "database": "Ensembl Peptide", "id": "AT3G26040.1", "url": "https://www.ensemblgenomes.org/id/AT3G26040.1" } ] } } ], "glycosylation": [], "phosphorylation": 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Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JBC7", "url": "https://www.uniprot.org/uniprotkb/F4JBC7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JBC7", "url": "https://www.uniprot.org/uniprotkb/F4JBC7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G26040", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26040", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JBC7", "url": "https://www.uniprot.org/uniprotkb/F4JBC7" } ], "pmid": "" } ] }, { "name": "Molecular Function", 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JBE2/entry#names_and_taxonomy" } ] }, { "name": "terminal EAR1-like 1", "type": "synonym", "evidence": [ { "id": "NP_189242", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189242" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JBE2", "url": "https://www.uniprot.org/uniprotkb/F4JBE2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "TEL1", "url": "https://www.uniprot.org/uniprotkb/F4JBE2", "locus": { "chromosome": "CP002686.1", "start_pos": 9549453, "end_pos": 9546259, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "AT3G26120", "url": "https://www.ensemblgenomes.org/id/AT3G26120" } ] } } ], "crossref": [ { "id": "F4JBE2", "url": "https://alphafold.ebi.ac.uk/entry/F4JBE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G26120", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G26120", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd12526", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12526", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12527", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12527", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12530", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12530", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "822211", "url": "https://www.ncbi.nlm.nih.gov/gene/822211", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034458", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034458", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G26120", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26120", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QELMPAP", "url": "https://omabrowser.org/oma/group/QELMPAP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_189242", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189242", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G26120", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G26120", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JBE2", "url": "https://www.uniprot.org/uniprotkb/F4JBE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JBE2-1", "url": "https://www.uniprot.org/uniprotkb/F4JBE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDSRLFPFVGNLDPRAQEFIPFNPISSGFHFPYTPPPPQLPPPLPPSSYGLSPTEPRVFTFFNIPPHPMMFSPPPPQPPPPPPRPCFNGVSAAQRLPLPSNTPTRSLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCGRHMQQQARGGSVWSSPSTSSARGFVSGRPVWAQFVVPATSAVPGGCNQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSRPGGIKNRFRSSRQPQLPFQPLREPPILIPPLRRPVSFIKDKNKNVSPKNGVIAVDASMRSLCIIDADDNKTRGTRGTESECAETKSKNVAKWGKKRQMKNMELSQFLISEETMEDPSCRDPRTTLMIKNIPNKYSQKLLLDMLDKHCIHINEAITEEHNKHESHHQPYSSYDFVYLPMDFNNKCNVGYGFVNMTSPEAAWRFYKAFHGQRWEVFNSHKICQITYARVQGLEDLKEHFKSSKFPCEAELYLPVVFSPPRDGKQLTEPVSINITINGCTRLNHNHFEQTVGQDHFLSGSCCDSDHDNSHEDGFSGSSVDCGRSITVEGETSF", "length": 615, "header": "tr|F4JBE2-1|F4JBE2_ARATH Isoform 1 of Terminal EAR1-like 1 OS=Arabidopsis thaliana OX=3702 GN=TEL1 PE=4 SV=1 CANONICAL=F4JBE2-1" }, "isoforms": [ { "isoform_ac": "F4JBE2-1", "url": "https://www.uniprot.org/uniprotkb/F4JBE2/entry#F4JBE2-1", "sequence": { "sequence": "MEDSRLFPFVGNLDPRAQEFIPFNPISSGFHFPYTPPPPQLPPPLPPSSYGLSPTEPRVFTFFNIPPHPMMFSPPPPQPPPPPPRPCFNGVSAAQRLPLPSNTPTRSLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCGRHMQQQARGGSVWSSPSTSSARGFVSGRPVWAQFVVPATSAVPGGCNQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSRPGGIKNRFRSSRQPQLPFQPLREPPILIPPLRRPVSFIKDKNKNVSPKNGVIAVDASMRSLCIIDADDNKTRGTRGTESECAETKSKNVAKWGKKRQMKNMELSQFLISEETMEDPSCRDPRTTLMIKNIPNKYSQKLLLDMLDKHCIHINEAITEEHNKHESHHQPYSSYDFVYLPMDFNNKCNVGYGFVNMTSPEAAWRFYKAFHGQRWEVFNSHKICQITYARVQGLEDLKEHFKSSKFPCEAELYLPVVFSPPRDGKQLTEPVSINITINGCTRLNHNHFEQTVGQDHFLSGSCCDSDHDNSHEDGFSGSSVDCGRSITVEGETSF", "length": 615, "header": "tr|F4JBE2-1|F4JBE2_ARATH Isoform 1 of Terminal EAR1-like 1 OS=Arabidopsis thaliana OX=3702 GN=TEL1 PE=4 SV=1 CANONICAL=F4JBE2-1" }, "locus": { "chromosome": "3", "start_pos": 9546259, "end_pos": 9549453, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G26120.1", "url": "https://www.ensemblgenomes.org/id/AT3G26120.1" }, { 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"https://www.ensemblgenomes.org/id/AT3G32904.1" }, { "database": "Ensembl Peptide", "id": "AT3G32904.1", "url": "https://www.ensemblgenomes.org/id/AT3G32904.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 306, "start_aa": "Thr", "end_pos": 306, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr306", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, 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Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JBG1", "url": "https://www.uniprot.org/uniprotkb/F4JBG1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, 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"id": "NP_001078117", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001078117", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G06778", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G06778", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JC50", "url": "https://www.uniprot.org/uniprotkb/F4JC50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JC50-1", "url": "https://www.uniprot.org/uniprotkb/F4JC50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKIRPGPDPKAALVSDILALSRSPISCIHINRISSGSCFIDWYLILGIQEDAEVKVIRKRYHKLALKVHPDKNNHPKADIAFKLIHEAYLCLSDETKRRSFNIDRRNNICLKCSRVSHKSKENRNDSKPNRFCQTLKDIRDKFREENMVIERCLKTNSAFFMGNRTNETPPVYGIPKQNRINKESPVFNPSDYRLWGYPHVRNRVFDYNLSSDWNMFTRSRSTCVHSS", "length": 229, "header": "tr|F4JC50-1|F4JC50_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JC50-1" }, "isoforms": [ { "isoform_ac": "F4JC50-1", "url": "https://www.uniprot.org/uniprotkb/F4JC50/entry#F4JC50-1", "sequence": { "sequence": "MGKIRPGPDPKAALVSDILALSRSPISCIHINRISSGSCFIDWYLILGIQEDAEVKVIRKRYHKLALKVHPDKNNHPKADIAFKLIHEAYLCLSDETKRRSFNIDRRNNICLKCSRVSHKSKENRNDSKPNRFCQTLKDIRDKFREENMVIERCLKTNSAFFMGNRTNETPPVYGIPKQNRINKESPVFNPSDYRLWGYPHVRNRVFDYNLSSDWNMFTRSRSTCVHSS", "length": 229, "header": "tr|F4JC50-1|F4JC50_ARATH Isoform 1 of Chaperone DnaJ-domain superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JC50-1" }, "locus": { "chromosome": "3", "start_pos": 2140026, "end_pos": 2141547, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G06778.1", "url": "https://www.ensemblgenomes.org/id/AT3G06778.1" }, { "database": "Ensembl Peptide", "id": "AT3G06778.1", "url": "https://www.ensemblgenomes.org/id/AT3G06778.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JC50", "url": "https://www.uniprot.org/uniprotkb/F4JC50" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JC50", "url": "https://www.uniprot.org/uniprotkb/F4JC50" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G06778", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G06778", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JC50-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 229, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JC50-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JC50" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JC50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JC50" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 106, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 165, "end_pos": 167 }, { "start_pos": 168, "end_pos": 170 }, { "start_pos": 210, "end_pos": 212 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JC74-1", "uniprot_ac": "F4JC74", "uniprot_id": "F4JC74_ARATH", "mass": { "chemical_mass": 78102.0, "monoisotopic_mass": 78102.0 }, "refseq": { "ac": "NP_187927", "name": "crooked neck protein, putative / cell cycle protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187927" }, "gene_names": [], "protein_names": [ { "name": "Crooked neck protein, putative / cell cycle protein", "type": "synonym", "evidence": [ { "id": "F4JC74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JC74/entry#names_and_taxonomy" } ] }, { "name": "crooked neck protein, putative / cell cycle protein", "type": "synonym", "evidence": [ { "id": "NP_187927", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187927" } ] } ], "function": [ { "annotation": "Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.", "evidence": [ { "database": "UniProtKB", "id": "F4JC74", "url": "https://www.uniprot.org/uniprotkb/F4JC74#function" }, { "database": "UniProtKB", "id": "ARBA00037040", "url": "https://www.uniprot.org/uniprotkb/ARBA00037040#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JC74", "url": "https://www.uniprot.org/uniprotkb/F4JC74" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JC74", "locus": {} } ], "crossref": [ { "id": "F4JC74", "url": "https://alphafold.ebi.ac.uk/entry/F4JC74", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G13210", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G13210", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820511", "url": "https://www.ncbi.nlm.nih.gov/gene/820511", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G13210", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13210", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TCELYER", "url": "https://omabrowser.org/oma/group/TCELYER/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11246", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11246", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11246:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11246:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02184", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02184", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_187927", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187927", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G13210", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G13210", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JC74", "url": "https://www.uniprot.org/uniprotkb/F4JC74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JC74-1", "url": "https://www.uniprot.org/uniprotkb/F4JC74-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGKDSDRNLGYMTRKDAELKLPRMTQVKNKTPAPIQITAEQILREARERQEAEFRPPNQTITDSAELSDYRLRRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKFELKYNEIECARSIYERFVLCHPKVSAYIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEEQYKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGELERTRALYERLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDRANTYNKDSTPELKEERAMLLEDWLNMETGFGKLGDVRVVQSKLPKKVKKRKLSSREDGCTEYEEYTDYLFPEESETTSLKILEAAHKWKKQKVKAGECV", "length": 657, "header": "tr|F4JC74-1|F4JC74_ARATH Isoform 1 of Crooked neck protein, putative / cell cycle protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JC74-1" }, "isoforms": [ { "isoform_ac": "F4JC74-1", "url": "https://www.uniprot.org/uniprotkb/F4JC74/entry#F4JC74-1", "sequence": { "sequence": "MASGKDSDRNLGYMTRKDAELKLPRMTQVKNKTPAPIQITAEQILREARERQEAEFRPPNQTITDSAELSDYRLRRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKFELKYNEIECARSIYERFVLCHPKVSAYIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEEQYKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGELERTRALYERLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDRANTYNKDSTPELKEERAMLLEDWLNMETGFGKLGDVRVVQSKLPKKVKKRKLSSREDGCTEYEEYTDYLFPEESETTSLKILEAAHKWKKQKVKAGECV", "length": 657, "header": "tr|F4JC74-1|F4JC74_ARATH Isoform 1 of Crooked neck protein, putative / cell cycle protein OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JC74-1" }, "locus": { "chromosome": "3", "start_pos": 4244900, "end_pos": 4247846, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13210.1", "url": "https://www.ensemblgenomes.org/id/AT3G13210.1" }, { "database": "Ensembl Peptide", "id": "AT3G13210.1", "url": "https://www.ensemblgenomes.org/id/AT3G13210.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", 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"https://www.ebi.ac.uk/interpro/entry/IPR036020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G13225", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13225", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NHDQQTG", "url": "https://omabrowser.org/oma/group/NHDQQTG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47852", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47852", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47852:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47852:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001154613", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154613", 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"start_pos": 4258746, "end_pos": 4262255, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13225.3", "url": "https://www.ensemblgenomes.org/id/AT3G13225.3" }, { "database": "Ensembl Peptide", "id": "AT3G13225.3", "url": "https://www.ensemblgenomes.org/id/AT3G13225.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 134, "end_pos": 134, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JC81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JC81" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser134" }, { "start_pos": 419, "end_pos": 419, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JC81", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JC81" }, { "database": 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Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, 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Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JCC9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCC9" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4JCC9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCC9" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": 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Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JCH0", "url": "https://www.uniprot.org/uniprotkb/F4JCH0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JCH0", "url": "https://www.uniprot.org/uniprotkb/F4JCH0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G26235", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26235", 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G33494", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JCM3", "url": "https://www.uniprot.org/uniprotkb/F4JCM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JCM3-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSISGLSIFLSRSSTLISLLTTRSKRRRCDTGRGGEPIDQDGGDDRGERSVRALDFSLQGEELLRAGLSLFLQIKSAIGLLLSPSRAEVPCGLGGSGFVDHFDGSTSERLSIEAMVCREVTNFLRRTSYAKKLVQFGNSNYSNFKSGQVPNECLGKRKGQSVYREVNEKSGLKVVRLKGLWAGRGKPRKLEVNSNSNV", "length": 198, "header": "tr|F4JCM3-1|F4JCM3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JCM3-1" }, "isoforms": [ { "isoform_ac": "F4JCM3-1", "url": "https://www.uniprot.org/uniprotkb/F4JCM3/entry#F4JCM3-1", "sequence": { "sequence": "MSISGLSIFLSRSSTLISLLTTRSKRRRCDTGRGGEPIDQDGGDDRGERSVRALDFSLQGEELLRAGLSLFLQIKSAIGLLLSPSRAEVPCGLGGSGFVDHFDGSTSERLSIEAMVCREVTNFLRRTSYAKKLVQFGNSNYSNFKSGQVPNECLGKRKGQSVYREVNEKSGLKVVRLKGLWAGRGKPRKLEVNSNSNV", "length": 198, "header": "tr|F4JCM3-1|F4JCM3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JCM3-1" }, "locus": { "chromosome": "3", "start_pos": 14038360, "end_pos": 14039358, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G33494.1", "url": "https://www.ensemblgenomes.org/id/AT3G33494.1" }, { "database": "Ensembl Peptide", "id": "AT3G33494.1", "url": "https://www.ensemblgenomes.org/id/AT3G33494.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 24, "end_pos": 24, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JCM3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCM3" } ], "site_lbl": "Ser24" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JCM3", "url": "https://www.uniprot.org/uniprotkb/F4JCM3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JCM3", "url": "https://www.uniprot.org/uniprotkb/F4JCM3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G33494", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G33494", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JCM3", "url": "https://www.uniprot.org/uniprotkb/F4JCM3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JCM3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 198, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JCM3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JCM3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 24 ], "sequon_annotation_sites": [ { "start_pos": 140, "end_pos": 142 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": 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}, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JCN4-1", "uniprot_ac": "F4JCN4", "uniprot_id": "F4JCN4_ARATH", "mass": { "chemical_mass": 30391.0, "monoisotopic_mass": 30391.0 }, "refseq": { "ac": "NP_190351", "name": "Plant invertase/pectin methylesterase inhibitor superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190351" }, "gene_names": [], "protein_names": [ { "name": "pectinesterase", "type": "recommended", "evidence": [ { "id": "F4JCN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JCN4/entry#names_and_taxonomy" } ] }, { "name": "3.1.1.11", "type": "synonym", "evidence": [ { "id": "F4JCN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JCN4/entry#names_and_taxonomy" } ] }, { "name": "Plant invertase/pectin methylesterase inhibitor superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_190351", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190351" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JCN4", "url": "https://www.uniprot.org/uniprotkb/F4JCN4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JCN4", "locus": {} } ], "crossref": [ { "id": "F4JCN4", "url": "https://alphafold.ebi.ac.uk/entry/F4JCN4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15798", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15798", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "823921", "url": "https://www.ncbi.nlm.nih.gov/gene/823921", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006501", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006501", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035513", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035513", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051955", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051955", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G47670", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G47670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IFKGYGK", "url": "https://omabrowser.org/oma/group/IFKGYGK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31080:SF303", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31080:SF303", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04043", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04043", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_190351", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_190351", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G47670", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G47670", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JCN4", "url": "https://www.uniprot.org/uniprotkb/F4JCN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JCN4-1", "url": "https://www.uniprot.org/uniprotkb/F4JCN4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQQSFTFQLLPVDFFSPKITDSSSSNFLRSKNHYPSMESINTLKGYDKVSDQENQIHHHHHSPLPKPSSFSRKTLIATGSVVSLLLILSVVALTAGAFTHSPPHHPPISSASLKSLCSVTRYPETCFNSLSSSLNESDSKLNPESILELSLRVAAKEISNLSISFRSINDMPEDAAVGDCVKLYTDALSQLNDSITEIERKKKKGGNNWLTEEVVGDVKTWISAAMTDGETCSDGIEEMGTIVGNEIKKKMEMANQMMSISLAIVSQMKKLLLIFH", "length": 276, "header": "tr|F4JCN4-1|F4JCN4_ARATH Isoform 1 of pectinesterase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JCN4-1" }, "isoforms": [ { "isoform_ac": "F4JCN4-1", "url": "https://www.uniprot.org/uniprotkb/F4JCN4/entry#F4JCN4-1", "sequence": { "sequence": "MQQSFTFQLLPVDFFSPKITDSSSSNFLRSKNHYPSMESINTLKGYDKVSDQENQIHHHHHSPLPKPSSFSRKTLIATGSVVSLLLILSVVALTAGAFTHSPPHHPPISSASLKSLCSVTRYPETCFNSLSSSLNESDSKLNPESILELSLRVAAKEISNLSISFRSINDMPEDAAVGDCVKLYTDALSQLNDSITEIERKKKKGGNNWLTEEVVGDVKTWISAAMTDGETCSDGIEEMGTIVGNEIKKKMEMANQMMSISLAIVSQMKKLLLIFH", "length": 276, "header": "tr|F4JCN4-1|F4JCN4_ARATH Isoform 1 of pectinesterase OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JCN4-1" }, "locus": { "chromosome": "3", "start_pos": 17574785, "end_pos": 17575880, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47670.1", "url": "https://www.ensemblgenomes.org/id/AT3G47670.1" }, { "database": "Ensembl Peptide", "id": "AT3G47670.1", "url": "https://www.ensemblgenomes.org/id/AT3G47670.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara 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"id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G47890", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G47890", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TCAREEK", "url": "https://omabrowser.org/oma/group/TCAREEK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22975", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22975", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22975:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22975:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00443", "url": 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} ], "sequence": { "sequence": "MGQKKKAPAPLDSALIKLECEKALKSFGRGSYNKAIRLIKDSCSRHQDSALIHRVQGTICVKVAAVYEDLATKQKYLRNAIESARKAVELSPDSIEFGHFYANLLYEAANDGKREYDEVVQECHRALSIENPIDPAKESLQDETQLKILTPEARIVHVQDELRSLIQKSNISSLSTWMNNLGKGEEKFRLIPIRRMAEDPIESNLVQTRRPNEIKKANKSIEEIRKEVEVRVAAARLLQQKSECENVGAVDNKGSDATLGSGKRSGERRKHGNARRNGSTADRRDRVKSYWDSMSKEMKKQLLRVKLSDLKSHFSASKDGNENEIISEALSFCEANKTWRFWVCCQCSEKFIKSEAYMHHIVQVHMGNVLPKMQMVLPQSFDTERIDMLLTSPWKPLDLSAAVKWLRSRQKIQNSEFSEFHAGDNMDDGDDCFKDARNDTSPEKESLGDSCKGCDENDPEEGKLSITFPPPDGWPISDDPERAKLLEKIRAAFELLIRHKYLAASHHDKVIQFTLDELQNLASVSQFLNRSLNQSPICICFLGASQLRKILKFLQDLSQACGLSRYSEQSNPNDEFNFGALCREVTEEILLDGEDSCLLLDEKLLGTECIQEIYMGSALHNVAVASSGDIANGNDVSSGADGFLSWIFTGPSSEEQVVSWMRTKEEKTNQGLEIMQHLEKEFYHLQNLCERKCEHLSYEGALQTVEDLCLEESRKRETSAEFTHESYESVLRKRREELNENDLELVFISSRFELDALTNVLKDAETLNHNQFGYEESYGCTSSQLRDLESGEADEWGMKDSLHEADSFIEVAIQKQKEQLSAELSRIDAQMMRNVTGMQQLELKLGPVSSNDYQIVLLPLVKSYMRAHLEALAEKDATEKSDAAREALLFELALDSKKEGRGRNDNSKHTLEKSKDKKKIKDTRKLKNLKATIGNDHRFNGDSIEHSLLSVASFGDHSEADVVSEAIEALSDEEEEYRRCNELEEEERKLAKTLEYQRRIENEAKEKHIAEQKKKYSCSDPMNVTEAVYDDCIENFFDDADLQEQEKPINQEKWNKQLDDLEGAKVNINGVFPSTNHCVISDTAKVLDVISQEVVPNGIAIQAGVFQSDQRPGRRGRRQKASNKLVDGKYQVTLSESEDSKSQRSGTDSERQSETLRSNGDAGPKTLRQLQAEDDEEERFQADLKRAKLQSLDVYRGRRNMTSCLRTSLEDNNDWVLSDVTKESQSSPGVAIFGTGLQNEVGEYNCFLNVIIQSLWNLGMFRAEFLRSSTLEHHHFGDPCVVCSLYAIFTALSTASSETRKEPVAPSSLRIALSNLYPDSSFFQEAQMNDASEVLAVIFDCLHRSFAQSSSVSDTESAESNSTGSWDCANRSCIAHSLFGMDVSEQLNCYSCGLESRHLKYTSFFHNINASALRTMKVTCAENSFDELLNLVEMNHQLACDREAGGCGKRNHIHHILTTPPHVFTIVLGWQNTCETVEDIAATLAALNTEIDISIMYRGVDPKNTYSLVSVVCYYGQHYHCFAYSHEHDQWIMYDDQNVKVIGSWSDVLSMCKRGHLQPQVLLYEKKL", 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"length": 1568, "header": "tr|F4JCR1-1|F4JCR1_ARATH Isoform 1 of Ubiquitin carboxyl-terminal hydrolase-related protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JCR1-1" }, "locus": { "chromosome": "3", "start_pos": 17667172, "end_pos": 17673812, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G47890.2", "url": "https://www.ensemblgenomes.org/id/AT3G47890.2" }, { "database": "Ensembl Peptide", "id": "AT3G47890.2", "url": "https://www.ensemblgenomes.org/id/AT3G47890.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 1307, "end_pos": 1307, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JCR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCR1" } ], "site_lbl": "Ser1307" }, { "start_pos": 258, "end_pos": 258, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JCR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCR1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr258" }, { "start_pos": 261, "end_pos": 261, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JCR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCR1" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser261" }, { "start_pos": 440, "end_pos": 440, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JCR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCR1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr440" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JCR1", "url": "https://www.uniprot.org/uniprotkb/F4JCR1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JCR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCR1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4JCR1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JCR1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JCR1", "url": "https://www.uniprot.org/uniprotkb/F4JCR1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G47890", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G47890", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": 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"tr|F4JCZ1-1|F4JCZ1_ARATH Isoform 1 of Proline-rich extensin-like family protein OS=Arabidopsis thaliana OX=3702 GN=EXT17 PE=4 SV=1 CANONICAL=F4JCZ1-1" }, "locus": { "chromosome": "3", "start_pos": 20200573, "end_pos": 20203919, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G54580.1", "url": "https://www.ensemblgenomes.org/id/AT3G54580.1" }, { "database": "Ensembl Peptide", "id": "AT3G54580.1", "url": "https://www.ensemblgenomes.org/id/AT3G54580.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JCZ1", "url": "https://www.uniprot.org/uniprotkb/F4JCZ1" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JCZ1", "url": "https://www.uniprot.org/uniprotkb/F4JCZ1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": 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endonuclease/exonuclease/phosphatase OS=Arabidopsis thaliana OX=3702 GN= PE=3 SV=1 CANONICAL=F4JD16-1" }, "locus": { "chromosome": "3", "start_pos": 22524475, "end_pos": 22530306, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G60950.1", "url": "https://www.ensemblgenomes.org/id/AT3G60950.1" }, { "database": "Ensembl Peptide", "id": "AT3G60950.1", "url": "https://www.ensemblgenomes.org/id/AT3G60950.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, 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S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JD16", "url": "https://www.uniprot.org/uniprotkb/F4JD16" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JD16", "url": "https://www.uniprot.org/uniprotkb/F4JD16" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G60950", 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"MLLKLFQQSRFFKSISGLGNVASPSHGFVGTRASRPPAVFGTHYLRLLATDSSPPNDTIGPQYGDPVRLPGYPQPNLCTAKTEIWWDVDSCRLPDSVDPYRLVGNLRKSLNEKGYRGPITSINAFGNTNRIDETTMLALSATGVYTRHIPDGRKESAHKKILVDLLCFGMDNIQQPCNIMLISARPGCSPKMHVCGYQISHLCDRFYDSTNMPILGFTSSPRHRWSSIYESFTSSPHFITTDHVSWRHGTQHIS", "length": 254, "header": "tr|F4JD25-1|F4JD25_ARATH Isoform 1 of Endonuclease or glycosyl hydrolase OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JD25-1" }, "locus": { "chromosome": "3", "start_pos": 22581473, "end_pos": 22584938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G61028.2", "url": "https://www.ensemblgenomes.org/id/AT3G61028.2" }, { "database": "Ensembl Peptide", "id": "AT3G61028.2", "url": "https://www.ensemblgenomes.org/id/AT3G61028.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": 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"sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JD27-1", "uniprot_ac": "F4JD27", "uniprot_id": "F4JD27_ARATH", "mass": { "chemical_mass": 57615.0, "monoisotopic_mass": 57615.0 }, "refseq": { "ac": "NP_567107", "name": "Calcium-dependent lipid-binding (CaLB domain) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567107" }, "gene_names": [ { "name": "T27I15.120", "type": "synonym", "evidence": [ { "id": "NP_567107", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567107" }, { "id": "F4JD27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JD27" } ] } ], "protein_names": [ { "name": "Calcium-dependent lipid-binding (CaLB domain) family protein", "type": "synonym", "evidence": [ { "id": "NP_567107", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567107" }, { "id": "F4JD27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JD27/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JD27", "url": "https://www.uniprot.org/uniprotkb/F4JD27" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JD27", "locus": {} } ], "crossref": [ { "id": "F4JD27", "url": "https://alphafold.ebi.ac.uk/entry/F4JD27", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G61030", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G61030", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd21677", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21677", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "825274", "url": "https://www.ncbi.nlm.nih.gov/gene/825274", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045050", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045050", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G61030", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G61030", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR10774", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10774", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10774:SF190", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10774:SF190", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_567107", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567107", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G61030", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G61030", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_187362", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_187362", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G07060", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G07060", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JD91", "url": "https://www.uniprot.org/uniprotkb/F4JD91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JD91-1", "url": "https://www.uniprot.org/uniprotkb/F4JD91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNRSLHLKKISWLSSRILSDNVHGRFRRSITTPATCLAPSLDGDMNIGSKTLVEQRFSRGFASVRRVSRASSSSSSSPSSPHVDLLSFIKASLDKLEGPSHHWLNRDFGNKQLFKDKGTYVVLAGHLLDGTSDLSGFFEKLKLLQQRSPGVCFMGIHFSDQARIADDRTALAELILKEYLTFPVLLSEKEFPKTSGEVRYIVFKDFKNPLIYEEKDLDIASVVKALDSLLTQDTEKSKSVRLFTNTWSKQAEAIKESHFPSFFQDLLLYFPGCISADEVGDRLFLSDTNHHRIIIFENSGKIVDSIGCFPGFEDGDFESAKMLRPTGTLYDEAEDCLYIVDSENHAIRRANINSRVLETVYPKVIKKTGGLWSWIMEKMGLGKDDDTTVDADTKSEEFDARSLLFPWHILKRDDESLLVINKSFSKLWIINFASGEIEEVVEGFSKIIEICGQSITEKLSVLEHMPSNWLQQQTAAIASFKEQPSASLLSSFTKLGDDIVMTDIACQRVLKLNRDSGACSSIQFSNSGILGLPYWLFIPLERVFNLANGVQEAHLSHTQELRLLPGKISIRLNIEIPPCTELVEPIQESCIWRQTRGAISEFSSAGSAVEPSEKIGVSQQWYDELDSLAKEIANPEAAEEEEEEDVNPSEVDREEDGRIHIDCPVKTSPGSSELIVYAALYLRLARNEETESATQEELARKIAKILKPVRNITTMKEDLFVNLLSKSKRELRDIVFIKPMHVRIRLDSKDHPKADNSRDVILTDSSVEVDVSL", "length": 774, "header": "tr|F4JD91-1|F4JD91_ARATH Isoform 1 of NHL domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=EMB1974 PE=1 SV=1 CANONICAL=F4JD91-1" }, "isoforms": [ { "isoform_ac": "F4JD91-1", "url": "https://www.uniprot.org/uniprotkb/F4JD91/entry#F4JD91-1", "sequence": { "sequence": "MSNRSLHLKKISWLSSRILSDNVHGRFRRSITTPATCLAPSLDGDMNIGSKTLVEQRFSRGFASVRRVSRASSSSSSSPSSPHVDLLSFIKASLDKLEGPSHHWLNRDFGNKQLFKDKGTYVVLAGHLLDGTSDLSGFFEKLKLLQQRSPGVCFMGIHFSDQARIADDRTALAELILKEYLTFPVLLSEKEFPKTSGEVRYIVFKDFKNPLIYEEKDLDIASVVKALDSLLTQDTEKSKSVRLFTNTWSKQAEAIKESHFPSFFQDLLLYFPGCISADEVGDRLFLSDTNHHRIIIFENSGKIVDSIGCFPGFEDGDFESAKMLRPTGTLYDEAEDCLYIVDSENHAIRRANINSRVLETVYPKVIKKTGGLWSWIMEKMGLGKDDDTTVDADTKSEEFDARSLLFPWHILKRDDESLLVINKSFSKLWIINFASGEIEEVVEGFSKIIEICGQSITEKLSVLEHMPSNWLQQQTAAIASFKEQPSASLLSSFTKLGDDIVMTDIACQRVLKLNRDSGACSSIQFSNSGILGLPYWLFIPLERVFNLANGVQEAHLSHTQELRLLPGKISIRLNIEIPPCTELVEPIQESCIWRQTRGAISEFSSAGSAVEPSEKIGVSQQWYDELDSLAKEIANPEAAEEEEEEDVNPSEVDREEDGRIHIDCPVKTSPGSSELIVYAALYLRLARNEETESATQEELARKIAKILKPVRNITTMKEDLFVNLLSKSKRELRDIVFIKPMHVRIRLDSKDHPKADNSRDVILTDSSVEVDVSL", "length": 774, "header": "tr|F4JD91-1|F4JD91_ARATH Isoform 1 of NHL domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=EMB1974 PE=1 SV=1 CANONICAL=F4JD91-1" }, "locus": { "chromosome": "3", "start_pos": 2232534, "end_pos": 2237141, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G07060.1", "url": "https://www.ensemblgenomes.org/id/AT3G07060.1" }, { "database": "Ensembl Peptide", "id": "AT3G07060.1", "url": "https://www.ensemblgenomes.org/id/AT3G07060.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JD91", "url": "https://www.uniprot.org/uniprotkb/F4JD91" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JD91", "url": "https://www.uniprot.org/uniprotkb/F4JD91" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G07060", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G07060", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F4JD91", "url": "https://www.uniprot.org/uniprotkb/F4JD91" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "F4JD91", "url": "https://www.uniprot.org/uniprotkb/F4JD91" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F4JD91", "url": "https://www.uniprot.org/uniprotkb/F4JD91" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JD91", "url": "https://www.uniprot.org/uniprotkb/F4JD91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 422, "end_pos": 424, "annotation": "n_glycosylation_sequon" }, { "start_pos": 712, "end_pos": 714, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JD91-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 774, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JD91-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JD91" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 }, { "start_pos": 422, "end_pos": 424 }, { "start_pos": 712, "end_pos": 714 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JDB5-1", "uniprot_ac": "F4JDB5", "uniprot_id": "F4JDB5_ARATH", "mass": { "chemical_mass": 5736.0, "monoisotopic_mass": 5736.0 }, "refseq": { "ac": "NP_001154615", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154615" }, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein", "type": "synonym", "evidence": [ { "id": "F4JDB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JDB5/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_001154615", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154615" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JDB5", "url": "https://www.uniprot.org/uniprotkb/F4JDB5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JDB5", "locus": {} } ], "crossref": [ { "id": "F4JDB5", "url": "https://alphafold.ebi.ac.uk/entry/F4JDB5", "database": "AlphaFoldDB", "categories": [] }, { "id": "7922438", "url": "https://www.ncbi.nlm.nih.gov/gene/7922438", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G13433", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G13433", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F4JDB5", "url": "https://www.orthodb.org/?gene=F4JDB5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "NP_001154615", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001154615", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G13433", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G13433", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JDB5", "url": "https://www.uniprot.org/uniprotkb/F4JDB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JDB5-1", "url": "https://www.uniprot.org/uniprotkb/F4JDB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRNLWLIALFLALSLVISSYAASTWPYQNRKLLIIESRPSKSRPAPQCC", "length": 50, "header": "tr|F4JDB5-1|F4JDB5_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JDB5-1" }, "isoforms": [ { "isoform_ac": "F4JDB5-1", "url": "https://www.uniprot.org/uniprotkb/F4JDB5/entry#F4JDB5-1", "sequence": { "sequence": "MKRNLWLIALFLALSLVISSYAASTWPYQNRKLLIIESRPSKSRPAPQCC", "length": 50, "header": "tr|F4JDB5-1|F4JDB5_ARATH Isoform 1 of Transmembrane protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JDB5-1" }, "locus": { "chromosome": "3", "start_pos": 4374214, "end_pos": 4374784, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13433.1", "url": "https://www.ensemblgenomes.org/id/AT3G13433.1" }, { "database": "Ensembl Peptide", "id": "AT3G13433.1", "url": "https://www.ensemblgenomes.org/id/AT3G13433.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, 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"evidence": [ { "id": "NP_683564", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_683564" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JDF8", "url": "https://www.uniprot.org/uniprotkb/F4JDF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JDF8", "locus": {} } ], "crossref": [ { "id": "F4JDF8", "url": "https://alphafold.ebi.ac.uk/entry/F4JDF8", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G13677", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G13677", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820575", "url": "https://www.ncbi.nlm.nih.gov/gene/820575", 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CANONICAL=F4JDF8-1" }, "locus": { "chromosome": "3", "start_pos": 4476296, "end_pos": 4477092, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13677.1", "url": "https://www.ensemblgenomes.org/id/AT3G13677.1" }, { "database": "Ensembl Peptide", "id": "AT3G13677.1", "url": "https://www.ensemblgenomes.org/id/AT3G13677.1" } ] } }, { "isoform_ac": "F4JDF9-1", "url": "https://www.uniprot.org/uniprotkb/F4JDF8/entry#F4JDF9-1", "sequence": { "sequence": "MGSRGNRVGERWNEMDCDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQRTLSQEKELELLFTQLSL", "length": 76, "header": "tr|F4JDF9-1|F4JDF9_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JDF8-1" }, "locus": { "chromosome": "3", "start_pos": 4476247, "end_pos": 4477028, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G13677.3", "url": "https://www.ensemblgenomes.org/id/AT3G13677.3" }, { "database": "Ensembl Peptide", "id": 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"locus": {} } ], "crossref": [ { "id": "F4JDQ4", "url": "https://alphafold.ebi.ac.uk/entry/F4JDQ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "822294", "url": "https://www.ncbi.nlm.nih.gov/gene/822294", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G26800", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26800", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_189315", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_189315", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G26800", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G26800", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JDQ4", "url": "https://www.uniprot.org/uniprotkb/F4JDQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JDQ4-1", "url": "https://www.uniprot.org/uniprotkb/F4JDQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } 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Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JDQ4", "url": "https://www.uniprot.org/uniprotkb/F4JDQ4" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JDQ4", "url": "https://www.uniprot.org/uniprotkb/F4JDQ4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G26800", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26800", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { 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1 of Phox (PX) domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=SNX5 PE=1 SV=1 CANONICAL=F4JDV4-1" }, "locus": { "chromosome": "3", "start_pos": 17828572, "end_pos": 17832759, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G48195.1", "url": "https://www.ensemblgenomes.org/id/AT3G48195.1" }, { "database": "Ensembl Peptide", "id": "AT3G48195.1", "url": "https://www.ensemblgenomes.org/id/AT3G48195.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 40, "start_aa": "Thr", "end_pos": 40, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr40", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "start_pos": 464, "end_pos": 464, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JDV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDV4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser464" }, { "start_pos": 567, "end_pos": 567, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JDV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDV4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr567" }, { "start_pos": 69, "end_pos": 69, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JDV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDV4" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser69" }, { "start_pos": 755, "end_pos": 755, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JDV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDV4" } ], "site_lbl": "Ser755" } ], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JDV4", "url": "https://www.uniprot.org/uniprotkb/F4JDV4" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "F4JDV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDV4" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JDV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDV4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "F4JDV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDV4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JDV4", "url": "https://www.uniprot.org/uniprotkb/F4JDV4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "F4JDV4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JDV4" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs 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H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": 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"MISKQGITAQCFFRPKKFFRMLFPKKNLLLNNFESSLTERLKKLIPQNTDEILTLPWMILAMELLYDTHNDINILITDLKLHYMTDSEHGYWFENYMNINTKLLDLCNAFMSLLRHMNHGIVCLKFLRHKLEMKSEDLCTEICSALDSWRENITAEISKCREVLGRYVESLNFHKCLCDSFVEFRQRYFAYICLEAIIVEKRFLGFADYQGDDLVQESFKESIEECKEEVEKLEHGLDEIFRKIGNLSDVTFKGREIIRDGLFDSMIRDRSSQDVTPHPTSACSGRSRHDNRGSRRLDDIEMVLLPIGGLPTSVRS", "length": 316, "header": "tr|F4JFC6-1|F4JFC6_ARATH Isoform 1 of BPS1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JFC6-1" }, "isoforms": [ { "isoform_ac": "F4JEB0-1", "url": "https://www.uniprot.org/uniprotkb/F4JFC6/entry#F4JEB0-1", "sequence": { "sequence": "MISKQGITAQCFFRPKKFFRMLFPKKNLLLNNFESSLTERLKKLIPQNTDEILTLPWMILAMELLYDTHNDINILITDLKLHYMTDSEHGYWFENYMNINTKLLDLCNAFMSLLRHMNHGIVCLKFLRHKLEMKSEDLCTEICSALDSWRENITAEISKCREVLGRYVESLNFHKCLCDSFVEFRQRYFAYICLEAIIVEKRFLGFADYQGDDLVQESFKESIEECKEEVEKLEHGLDEIFRKIGNLSDVTFKGREIIRDAEGHVTIIEAVEEKPELRVLA", "length": 281, "header": "tr|F4JEB0-1|F4JFC6_ARATH Computationally mapped isoform of BPS1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JFC6-1" }, "locus": { "chromosome": "3", "start_pos": 22760541, "end_pos": 22762388, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G61500.1", "url": "https://www.ensemblgenomes.org/id/AT3G61500.1" }, { "database": "Ensembl Peptide", "id": "AT3G61500.1", "url": "https://www.ensemblgenomes.org/id/AT3G61500.1" } ] } }, { "isoform_ac": "F4JFC6-1", "url": "https://www.uniprot.org/uniprotkb/F4JFC6/entry#F4JFC6-1", "sequence": { "sequence": "MISKQGITAQCFFRPKKFFRMLFPKKNLLLNNFESSLTERLKKLIPQNTDEILTLPWMILAMELLYDTHNDINILITDLKLHYMTDSEHGYWFENYMNINTKLLDLCNAFMSLLRHMNHGIVCLKFLRHKLEMKSEDLCTEICSALDSWRENITAEISKCREVLGRYVESLNFHKCLCDSFVEFRQRYFAYICLEAIIVEKRFLGFADYQGDDLVQESFKESIEECKEEVEKLEHGLDEIFRKIGNLSDVTFKGREIIRDGLFDSMIRDRSSQDVTPHPTSACSGRSRHDNRGSRRLDDIEMVLLPIGGLPTSVRS", "length": 316, "header": "tr|F4JFC6-1|F4JFC6_ARATH Isoform 1 of BPS1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JFC6-1" }, "locus": { "chromosome": "3", "start_pos": 22760628, "end_pos": 22762388, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G61500.2", "url": "https://www.ensemblgenomes.org/id/AT3G61500.2" }, { "database": "Ensembl Peptide", "id": "AT3G61500.2", "url": "https://www.ensemblgenomes.org/id/AT3G61500.2" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 284, "end_pos": 284, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JFC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFC6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser284" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JEB0", "url": "https://www.uniprot.org/uniprotkb/F4JEB0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4JFC6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JFC6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JEB0", "url": "https://www.uniprot.org/uniprotkb/F4JEB0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G61500", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G61500", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JFC6", "url": "https://www.uniprot.org/uniprotkb/F4JFC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JFC6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JFC6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JFC6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 284 ], "sequon_annotation_sites": [ { "start_pos": 152, "end_pos": 154 }, { "start_pos": 246, "end_pos": 248 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"MDPRPNTAKVGDEFARQYYNTLQNAPENLYKLYKDKSTISRPGLDGTMRVFTLSKDLKWRSPGSFDSVKITSVTSQDSLKQGILVVVYGYLTFNERPARHFTQVFFLVPQEKGYIVCTDMFRFVDIPEANAAIPPANDVIEEKVPETEGAALRVSEPNHGFDNVPKLSCASEGAAICAKKLPLDATIAFVENAFKQFGEIRRGGVEVRINWHCTGKYAYVEFEEAEAANRAIMASPISIDGYRTYVEKKYAYNKSADTGNGNSQDSQAITEDAHIRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRAIQASPLNVDGHTTYVEQKQPYYEGYYESPSDGPGNIKRGEGVRGSLGNPICNWQKMEEVRGTDVYDLQNWQKIMNQSEEQMKFQEEEGRQYNQNRYTSEEVRGTEGVGLEEEEEEEENQNWEEQRKIQEEEGTESHEASVFLKRLPLDVTFALIEDALKKFGPINAISIIKSGPLYKFAFVDFEKADVANRAIMASPVRICEKNVNVQKKLSAGAGKRYTRPTCRDTSVPLGAESGHREQGSQNRYGSEQVRGTEAFDFWDWQWQKSKEEQSKLQEEEGEIQVDHSWEEEHSKVLEEESKLQEEAVETQVDHSWDYEQIMEEQEEEESKQNQTSYIEDIAAFFSGVL", "length": 677, "header": "tr|F4JED3-1|F4JED3_ARATH Isoform 1 of RNA-binding (RRM-RBD-RNP motif) domain nuclear transport factor 2 family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=F4JED3-1" }, "locus": { "chromosome": "3", "start_pos": 2303075, "end_pos": 2306615, "strand": "+", "evidence": [ { 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"Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JEG0", "url": "https://www.uniprot.org/uniprotkb/F4JEG0" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JEG0", "url": "https://www.uniprot.org/uniprotkb/F4JEG0" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "secretory vesicle", "id": "GO:0099503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099503", "evidence": [ { "database": "UniProtKB", "id": "F4JEG0", "url": "https://www.uniprot.org/uniprotkb/F4JEG0" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JEG0", "url": "https://www.uniprot.org/uniprotkb/F4JEG0" } ], "pmid": "" }, { "name": "plant-type vacuole", "id": "GO:0000325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000325", "evidence": [ { "database": "UniProtKB", "id": "F4JEG0", "url": "https://www.uniprot.org/uniprotkb/F4JEG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JEG0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 271, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JEG0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JEG0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", 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Classification" ] }, { "id": "819946", "url": "https://www.ncbi.nlm.nih.gov/gene/819946", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022228", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022228", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G07565", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G07565", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KYAKIAM", "url": "https://omabrowser.org/oma/group/KYAKIAM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F4JEH7", "url": "https://www.orthodb.org/?gene=F4JEH7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JEH8", "url": "https://www.orthodb.org/?gene=F4JEH8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F4JEI0", "url": "https://www.orthodb.org/?gene=F4JEI0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14000", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14000", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14000:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14000:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12579", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12579", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001189835", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001189835", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G07565", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G07565", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JEH7", "url": "https://www.uniprot.org/uniprotkb/F4JEH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JEH7-1", "url": "https://www.uniprot.org/uniprotkb/F4JEH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JEH8", "url": "https://www.uniprot.org/uniprotkb/F4JEH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JEH8-1", "url": "https://www.uniprot.org/uniprotkb/F4JEH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JEI0", "url": "https://www.uniprot.org/uniprotkb/F4JEI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JEI0-1", "url": "https://www.uniprot.org/uniprotkb/F4JEI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASANPSGNNQEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRHNPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENGKRRKEDHSSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIGGVSGDLLEQNAQMFNQLSTNFSAFQVNSTSTFHLLHENVNILCKARDNILAILNDLNDMPEVMKQMPPLPVKLNEELANSILPRPSHQRKS", "length": 268, "header": "tr|F4JEH7-1|F4JEH7_ARATH Isoform 1 of Histone H2A deubiquitinase (DUF3755) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JEH7-1" }, "isoforms": [ { "isoform_ac": "F4JEH7-1", "url": "https://www.uniprot.org/uniprotkb/F4JEH7/entry#F4JEH7-1", "sequence": { "sequence": "MAASANPSGNNQEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRHNPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENGKRRKEDHSSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIGGVSGDLLEQNAQMFNQLSTNFSAFQVNSTSTFHLLHENVNILCKARDNILAILNDLNDMPEVMKQMPPLPVKLNEELANSILPRPSHQRKS", "length": 268, "header": "tr|F4JEH7-1|F4JEH7_ARATH Isoform 1 of Histone H2A deubiquitinase (DUF3755) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JEH7-1" }, "locus": { "chromosome": "3", "start_pos": 2413640, "end_pos": 2416128, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G07565.4", "url": "https://www.ensemblgenomes.org/id/AT3G07565.4" }, { "database": "Ensembl Peptide", "id": "AT3G07565.4", "url": "https://www.ensemblgenomes.org/id/AT3G07565.4" } ] } }, { "isoform_ac": "F4JEH8-1", "url": "https://www.uniprot.org/uniprotkb/F4JEH7/entry#F4JEH8-1", "sequence": { "sequence": "MAASANPSGNNQEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRHNPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENGKRRKEDHSSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIGGVSGDLLEQNAQMFNQLSTNFSAFQLHENVNILCKARDNILAILNDLNDMPEVMKQMPPLPVKLNEELANSILPRPSHQRKS", "length": 259, "header": "tr|F4JEH8-1|F4JEH8_ARATH Computationally mapped isoform of Histone H2A deubiquitinase (DUF3755) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JEH7-1" }, "locus": { "chromosome": "3", "start_pos": 2413634, "end_pos": 2416227, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G07565.3", "url": "https://www.ensemblgenomes.org/id/AT3G07565.3" }, { "database": "Ensembl Peptide", "id": "AT3G07565.3", "url": "https://www.ensemblgenomes.org/id/AT3G07565.3" } ] } }, { "isoform_ac": "F4JEI0-1", "url": "https://www.uniprot.org/uniprotkb/F4JEH7/entry#F4JEI0-1", "sequence": { "sequence": "MAASANPSGNNQEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRHNPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENGKRRKEDHSSRKSKDKKEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKGLSKILGFFHLKAKSSRLD", "length": 192, "header": "tr|F4JEI0-1|F4JEI0_ARATH Computationally mapped isoform of Histone H2A deubiquitinase (DUF3755) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JEH7-1" }, "locus": { "chromosome": "3", "start_pos": 2413642, "end_pos": 2416259, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G07565.2", "url": "https://www.ensemblgenomes.org/id/AT3G07565.2" }, { "database": "Ensembl Peptide", "id": "AT3G07565.2", "url": "https://www.ensemblgenomes.org/id/AT3G07565.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEN3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JEN3", "url": "https://www.uniprot.org/uniprotkb/F4JEN3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JEN3", "locus": {} } ], "crossref": [ { "id": "F4JEN3", "url": "https://alphafold.ebi.ac.uk/entry/F4JEN3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT3G14030", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT3G14030", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "820617", "url": "https://www.ncbi.nlm.nih.gov/gene/820617", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT3G14030", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G14030", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CLEIWIT", "url": "https://omabrowser.org/oma/group/CLEIWIT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PF07734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_188019", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188019", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G14030", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G14030", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JEN3", "url": "https://www.uniprot.org/uniprotkb/F4JEN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JEN3-1", "url": "https://www.uniprot.org/uniprotkb/F4JEN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MITSLSKQSFWGNTYFYAQEKATVEGEGMEEVDVDTTYLPVFLLCFDFTAERFGPRLPLPFHSHDNSHDEEIVSLFCVKEEQLAVLHQNFARCLEIWITTKIEPSAVSWSMFLKVDMRPLTGFKCHVEAGSFFVDEEKKVAMVFDLDGRKKTETCRYQTAHIIGQDGYFKSVNIREAQNLGKPDIFGYTPSIYCVPLGYT", "length": 200, "header": "tr|F4JEN3-1|F4JEN3_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JEN3-1" }, "isoforms": [ { "isoform_ac": "F4JEN3-1", "url": "https://www.uniprot.org/uniprotkb/F4JEN3/entry#F4JEN3-1", "sequence": { "sequence": "MITSLSKQSFWGNTYFYAQEKATVEGEGMEEVDVDTTYLPVFLLCFDFTAERFGPRLPLPFHSHDNSHDEEIVSLFCVKEEQLAVLHQNFARCLEIWITTKIEPSAVSWSMFLKVDMRPLTGFKCHVEAGSFFVDEEKKVAMVFDLDGRKKTETCRYQTAHIIGQDGYFKSVNIREAQNLGKPDIFGYTPSIYCVPLGYT", "length": 200, "header": "tr|F4JEN3-1|F4JEN3_ARATH Isoform 1 of F-box associated ubiquitination effector family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JEN3-1" }, "locus": { "chromosome": "3", "start_pos": 4646272, "end_pos": 4647124, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G14030.1", "url": "https://www.ensemblgenomes.org/id/AT3G14030.1" }, { "database": "Ensembl Peptide", "id": "AT3G14030.1", "url": "https://www.ensemblgenomes.org/id/AT3G14030.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JEN3", "url": "https://www.uniprot.org/uniprotkb/F4JEN3" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JEN3", "url": "https://www.uniprot.org/uniprotkb/F4JEN3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G14030", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G14030", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JEN3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 200, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JEN3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JEN3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F4JEN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEN3" }, { "id": "PF07734", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07734" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box associated beta-propeller type 1", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 192, "start_aa": "Ser", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JEP8-1", "uniprot_ac": "F4JEP8", "uniprot_id": "F4JEP8_ARATH", "mass": { "chemical_mass": 50332.0, "monoisotopic_mass": 50332.0 }, "refseq": { "ac": "NP_188685", "name": "Rho GTPase-activating protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188685" }, "gene_names": [ { "name": "KNO1", "type": "recommended", "evidence": [ { "id": "F4JEP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEP8" } ] } ], "protein_names": [ { "name": "Rho GTPase-activating protein", "type": "synonym", "evidence": [ { "id": "NP_188685", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188685" }, { "id": "F4JEP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JEP8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JEP8", "url": "https://www.uniprot.org/uniprotkb/F4JEP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "KNO1", "url": "https://www.uniprot.org/uniprotkb/F4JEP8", "locus": {} } ], "crossref": [ { "id": "F4JEP8", "url": "https://alphafold.ebi.ac.uk/entry/F4JEP8", "database": "AlphaFoldDB", "categories": [] }, { "id": "821595", "url": "https://www.ncbi.nlm.nih.gov/gene/821595", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT3G20490", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G20490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PLMSENA", "url": "https://omabrowser.org/oma/group/PLMSENA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR38371", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38371", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38371:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38371:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_188685", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_188685", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G20490", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G20490", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JEP8", "url": "https://www.uniprot.org/uniprotkb/F4JEP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JEP8-1", "url": "https://www.uniprot.org/uniprotkb/F4JEP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSIEPPSFSLGFDLDAASDLQSEIHQNPSSTGDQLIGDGDNEPELGLTVSDSDRELEPDFTSPVLKRLRRGINPNKCSVKDDRSVAVEDRDDDIEEFSSPEDFPTDAPASTRSHFSSCSSRVPLHGSGVLSNQPSISRGKRKQSDVQASAASGISSVASLFQMSSRSPLRRFQLLDSDSEDDHPSTSRDLSGATKKHDSFSKNQPSIASKPKRKEPGSIPCIKDLWKDFSPASSKIQTPAFDDVCQDYFISIKTTSTAQKQSSAVASSSNSGNHNLTGFQQTELFHDFSHPSPPSHRFFLHSDPRIRNLARQRLPNFFPLGIVNDRESQREVFLVDYMNQFGSKGSSKAGDSSSKSCRRGKTKSKVSKSQESAHNSEGWLNPKTRAAAPKDAGKRRVSADSGSAGHWFTSPEGRKVYISKSGQEFSGQSAYRCYKKENGVGFKKSRKKRQPKKKAKN", "length": 458, "header": "tr|F4JEP8-1|F4JEP8_ARATH Isoform 1 of Rho GTPase-activating protein OS=Arabidopsis thaliana OX=3702 GN=KNO1 PE=1 SV=1 CANONICAL=F4JEP8-1" }, "isoforms": [ { "isoform_ac": "F4JEP8-1", "url": "https://www.uniprot.org/uniprotkb/F4JEP8/entry#F4JEP8-1", "sequence": { "sequence": "MDSIEPPSFSLGFDLDAASDLQSEIHQNPSSTGDQLIGDGDNEPELGLTVSDSDRELEPDFTSPVLKRLRRGINPNKCSVKDDRSVAVEDRDDDIEEFSSPEDFPTDAPASTRSHFSSCSSRVPLHGSGVLSNQPSISRGKRKQSDVQASAASGISSVASLFQMSSRSPLRRFQLLDSDSEDDHPSTSRDLSGATKKHDSFSKNQPSIASKPKRKEPGSIPCIKDLWKDFSPASSKIQTPAFDDVCQDYFISIKTTSTAQKQSSAVASSSNSGNHNLTGFQQTELFHDFSHPSPPSHRFFLHSDPRIRNLARQRLPNFFPLGIVNDRESQREVFLVDYMNQFGSKGSSKAGDSSSKSCRRGKTKSKVSKSQESAHNSEGWLNPKTRAAAPKDAGKRRVSADSGSAGHWFTSPEGRKVYISKSGQEFSGQSAYRCYKKENGVGFKKSRKKRQPKKKAKN", "length": 458, "header": "tr|F4JEP8-1|F4JEP8_ARATH Isoform 1 of Rho GTPase-activating protein OS=Arabidopsis thaliana OX=3702 GN=KNO1 PE=1 SV=1 CANONICAL=F4JEP8-1" }, "locus": { "chromosome": "3", "start_pos": 7153511, "end_pos": 7156536, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G20490.1", "url": "https://www.ensemblgenomes.org/id/AT3G20490.1" }, { "database": "Ensembl Peptide", "id": "AT3G20490.1", "url": "https://www.ensemblgenomes.org/id/AT3G20490.1" } ] } } ], "glycosylation": [], 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Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JEV5", "url": "https://www.uniprot.org/uniprotkb/F4JEV5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G26960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G26960", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F4JEV5", "url": "https://www.uniprot.org/uniprotkb/F4JEV5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, 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S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JF18", "url": "https://www.uniprot.org/uniprotkb/F4JF18" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JF18", "url": "https://www.uniprot.org/uniprotkb/F4JF18" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G48480", 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JF32-1", "uniprot_ac": "F4JF32", "uniprot_id": "F4JF32_ARATH", "mass": { "chemical_mass": 25419.0, "monoisotopic_mass": 25419.0 }, "refseq": { "ac": "NP_001190034", "name": "SWIB complex BAF60b domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190034" }, "gene_names": [ { "name": "SWIB1", "type": "recommended", "evidence": [ { "id": "F4JF32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JF32" } ] } ], "protein_names": [ { "name": "SWIB complex BAF60b domain-containing protein", "type": "synonym", "evidence": [ { "id": "NP_001190034", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190034" }, { "id": "F4JF32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JF32/entry#names_and_taxonomy" } ] } ], 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"F4JF33-1", "url": "https://www.uniprot.org/uniprotkb/F4JF33-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPISKILGGCRTLMAKAVTNATATGAGVDRRGGIHKIFPVSESLARFVGQSEVSFSTAMEKVEQYTDDHNLWNPENIEEILCDDNLKTIFDGQDKVVGVREMTELLLRHFPNVRTMSAKVKATGGGTIEKWGFNDIVKVSEPLARFVGQSEISFDAALRKLLDYAFDHKLVDEGVTLLEFPWITKCSKWRIRCDDTLKTILDGKDKVGNKELSSLLMQHFPDSSLHS", "length": 228, "header": "tr|F4JF32-1|F4JF32_ARATH Isoform 1 of SWIB complex BAF60b domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=SWIB1 PE=4 SV=1 CANONICAL=F4JF32-1" }, "isoforms": [ { "isoform_ac": "F4JF32-1", "url": "https://www.uniprot.org/uniprotkb/F4JF32/entry#F4JF32-1", "sequence": { "sequence": "MSPISKILGGCRTLMAKAVTNATATGAGVDRRGGIHKIFPVSESLARFVGQSEVSFSTAMEKVEQYTDDHNLWNPENIEEILCDDNLKTIFDGQDKVVGVREMTELLLRHFPNVRTMSAKVKATGGGTIEKWGFNDIVKVSEPLARFVGQSEISFDAALRKLLDYAFDHKLVDEGVTLLEFPWITKCSKWRIRCDDTLKTILDGKDKVGNKELSSLLMQHFPDSSLHS", "length": 228, "header": "tr|F4JF32-1|F4JF32_ARATH Isoform 1 of SWIB 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"MVKTQKKNKKDTSFDADDNETMIIITSKLQHVLAAKSRRLQYLSSPVTTKDVSLSLMSSPDDSLSRASIPFSWEEEPGKPKHHVRHPSYSKCLDLPPRMLFPDEFTKMPRTANHGRYLAGWKRWFRWKKERDGDAYVAGSGSYIYPSEDEDDTKTTRTKGLHCFSYVTRCYFWVN", "length": 175, "header": "tr|F4JFH6-1|F4JFH6_ARATH Isoform 1 of Auxin response factor, putative (DUF688) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JFH6-1" }, "isoforms": [ { "isoform_ac": "F4JFH6-1", "url": "https://www.uniprot.org/uniprotkb/F4JFH6/entry#F4JFH6-1", "sequence": { "sequence": "MVKTQKKNKKDTSFDADDNETMIIITSKLQHVLAAKSRRLQYLSSPVTTKDVSLSLMSSPDDSLSRASIPFSWEEEPGKPKHHVRHPSYSKCLDLPPRMLFPDEFTKMPRTANHGRYLAGWKRWFRWKKERDGDAYVAGSGSYIYPSEDEDDTKTTRTKGLHCFSYVTRCYFWVN", "length": 175, "header": "tr|F4JFH6-1|F4JFH6_ARATH Isoform 1 of Auxin response factor, putative (DUF688) OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JFH6-1" }, "locus": { "chromosome": "3", "start_pos": 22892466, "end_pos": 22893304, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G61840.1", "url": "https://www.ensemblgenomes.org/id/AT3G61840.1" }, { "database": "Ensembl Peptide", "id": "AT3G61840.1", "url": "https://www.ensemblgenomes.org/id/AT3G61840.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JFH6", "url": "https://www.uniprot.org/uniprotkb/F4JFH6" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JFH6", "url": "https://www.uniprot.org/uniprotkb/F4JFH6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT3G61840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT3G61840", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JFH6", "url": "https://www.uniprot.org/uniprotkb/F4JFH6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JFH6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 175, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JFH6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JFH6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 19, "end_pos": 21 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JFN7-1", "uniprot_ac": "F4JFN7", "uniprot_id": "F4JFN7_ARATH", "mass": { "chemical_mass": 52056.0, "monoisotopic_mass": 52056.0 }, "refseq": { "ac": "NP_850539", "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850539" }, "gene_names": [], "protein_names": [ { "name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "type": "synonym", "evidence": [ { "id": "NP_850539", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850539" }, { "id": "F4JFN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JFN7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JFN7", "url": "https://www.uniprot.org/uniprotkb/F4JFN7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JFN7", "locus": {} } ], "crossref": [ { "id": "F4JFN7", "url": "https://alphafold.ebi.ac.uk/entry/F4JFN7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12330", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12330", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "819972", "url": "https://www.ncbi.nlm.nih.gov/gene/819972", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CRLECEL", "url": "https://omabrowser.org/oma/group/CRLECEL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48032", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48032", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48032:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48032:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_850539", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_850539", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT3G07810", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT3G07810", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JFN7", "url": "https://www.uniprot.org/uniprotkb/F4JFN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JFN7-1", "url": "https://www.uniprot.org/uniprotkb/F4JFN7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRGEPSR", "length": 495, "header": "tr|F4JFN7-1|F4JFN7_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JFN7-1" }, "isoforms": [ { "isoform_ac": "F4JFN7-1", "url": "https://www.uniprot.org/uniprotkb/F4JFN7/entry#F4JFN7-1", "sequence": { "sequence": "MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRGEPSR", "length": 495, "header": "tr|F4JFN7-1|F4JFN7_ARATH Isoform 1 of RNA-binding (RRM/RBD/RNP motifs) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JFN7-1" }, "locus": { "chromosome": "3", "start_pos": 2492293, "end_pos": 2495750, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT3G07810.2", "url": "https://www.ensemblgenomes.org/id/AT3G07810.2" }, { "database": "Ensembl Peptide", "id": "AT3G07810.2", "url": "https://www.ensemblgenomes.org/id/AT3G07810.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "F4JFN7", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=F4JFN7" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_reported_with_glycan" ], "publication": [ { "title": "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "2000", "authors": "Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Bl\u00f6cker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell L A, Mache R, Puigdom\u00e8nech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Qu\u00e9tier F, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, L\u00f6hnert T H, Nordsiek G, Reichelt J, Scharfe M, Sch\u00f6n O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenw\u00e4lder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse A C, Alcaraz J P, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes H W, Mayer K F, Kaul S, Town C D, Koo H L, Tallon L J, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii C Y, Shea T P, Creasy T H, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill J E, Feldblyum T V, Preuss D, Lin X, Nierman W C, Salzberg S L, White O, Venter J C, Fraser C M, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, , ,", "evidence": [ { "database": "UniProtKB", "id": "F4JFN7", "url": "https://www.uniprot.org/uniprotkb/F4JFN7" } ], "reference": [ { "type": "PubMed", "id": "11130713", "url": "https://glygen.org/publication/PubMed/11130713" } ] }, { "title": "Large-scale Arabidopsis 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M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JFX4", "url": "https://www.uniprot.org/uniprotkb/F4JFX4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town 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H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JFZ4", "url": "https://www.uniprot.org/uniprotkb/F4JFZ4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JFZ4", "url": "https://www.uniprot.org/uniprotkb/F4JFZ4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": 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Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JFZ6", "url": "https://www.uniprot.org/uniprotkb/F4JFZ6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JFZ6", "url": "https://www.uniprot.org/uniprotkb/F4JFZ6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G08267", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G08267", "resource": "KEGG 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"MEFEEQVDQMVEAKLCSRTSHHTRWRISSQCVRSNLEVRKFSRAGQRGGDEYLCRFGSGSRSICAVGDVTVVPGVVVLINTIAADDSHQLLRQLRLVVACFLLDFAPSNVESWSVPDECRLTPRSCWSTLRLGVEWVGLVSRIAGMTSIEHIWRVVVIKLNSTKCKPSMVDMTAFRMNYWVFKTDSVNPNWLDSELAKSASKARKEVKDHGMELIEGAIRFIQTEKAQSQLESDIKESKLNATLKDKKERLAAFPASPFDPQLYEEFFTESPPLGETGLDWVAGVPITLIPTIKYNSIQPKVPLIVNNDPVMVLNDENVLETAHEPSAEQKLIKDPFVAERIRDGN", "length": 346, "header": "tr|F4JG15-1|F4JG15_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JG15-1" }, "locus": { "chromosome": "4", "start_pos": 5004096, "end_pos": 5005932, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G08097.1", "url": "https://www.ensemblgenomes.org/id/AT4G08097.1" }, { "database": "Ensembl Peptide", "id": "AT4G08097.1", "url": "https://www.ensemblgenomes.org/id/AT4G08097.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant 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J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JG15", "url": "https://www.uniprot.org/uniprotkb/F4JG15" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JG15", "url": "https://www.uniprot.org/uniprotkb/F4JG15" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G08097", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G08097", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JG15", "url": "https://www.uniprot.org/uniprotkb/F4JG15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JG15-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 346, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JG15-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JG15" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 }, { "start_pos": 241, "end_pos": 243 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"uniprot_canonical_ac": "F4JG23-1", "uniprot_ac": "F4JG23", "uniprot_id": "F4JG23_ARATH", "mass": { "chemical_mass": 15422.0, "monoisotopic_mass": 15422.0 }, "refseq": { "ac": "NP_567214", "name": "serine protease inhibitor, Kazal-type family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567214" }, "gene_names": [ { "name": "KPI-2", "type": "recommended", "evidence": [ { "id": "F4JG23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JG23" } ] }, { "name": "T15B16.19", "type": "synonym", "evidence": [ { "id": "NP_567214", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567214" }, { "id": "F4JG23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JG23" } ] }, { "name": "T15B16_19", "type": "synonym", "evidence": [ { "id": "NP_567214", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567214" }, { "id": "F4JG23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JG23" } ] } ], "protein_names": [ { "name": "Serine protease inhibitor, Kazal-type family protein", "type": "synonym", "evidence": [ { "id": "F4JG23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JG23/entry#names_and_taxonomy" } ] }, { "name": "serine protease inhibitor, Kazal-type family protein", "type": "synonym", "evidence": [ { "id": "NP_567214", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567214" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JG23", "url": "https://www.uniprot.org/uniprotkb/F4JG23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "KPI-2", "url": "https://www.uniprot.org/uniprotkb/F4JG23", "locus": {} } ], "crossref": [ { "id": "F4JG23", "url": "https://alphafold.ebi.ac.uk/entry/F4JG23", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G01575", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G01575", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828124", "url": "https://www.ncbi.nlm.nih.gov/gene/828124", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G01575", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G01575", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IHIVWLM", "url": "https://omabrowser.org/oma/group/IHIVWLM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34376", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34376", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34376:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34376:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_567214", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567214", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G01575", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G01575", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JG23", "url": "https://www.uniprot.org/uniprotkb/F4JG23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JG23-1", "url": "https://www.uniprot.org/uniprotkb/F4JG23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFKIRISAMSTISPSLAVIAFLFLILLNLSSVFADPSTEGGEIIRLPSEKINGEKNRGEFCEGIAKPASCPVQCFRPDPVCGEDSVTYWCGCADALCHGVRVVKQGACDVGNGVGLSVPGQALLLIHIVWMMLLGFSILFGLF", "length": 144, "header": "tr|F4JG23-1|F4JG23_ARATH Isoform 1 of Serine protease inhibitor, Kazal-type family protein OS=Arabidopsis thaliana OX=3702 GN=KPI-2 PE=4 SV=1 CANONICAL=F4JG23-1" }, "isoforms": [ { "isoform_ac": "F4JG23-1", "url": "https://www.uniprot.org/uniprotkb/F4JG23/entry#F4JG23-1", "sequence": { "sequence": "MKFKIRISAMSTISPSLAVIAFLFLILLNLSSVFADPSTEGGEIIRLPSEKINGEKNRGEFCEGIAKPASCPVQCFRPDPVCGEDSVTYWCGCADALCHGVRVVKQGACDVGNGVGLSVPGQALLLIHIVWMMLLGFSILFGLF", "length": 144, "header": "tr|F4JG23-1|F4JG23_ARATH Isoform 1 of Serine protease inhibitor, Kazal-type family protein OS=Arabidopsis thaliana OX=3702 GN=KPI-2 PE=4 SV=1 CANONICAL=F4JG23-1" }, "locus": { "chromosome": "4", "start_pos": 681862, "end_pos": 682601, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G01575.1", "url": "https://www.ensemblgenomes.org/id/AT4G01575.1" }, { "database": "Ensembl Peptide", "id": "AT4G01575.1", "url": "https://www.ensemblgenomes.org/id/AT4G01575.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray 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] }, { "id": "F4JG50-1", "url": "https://www.uniprot.org/uniprotkb/F4JG50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAENQNQFCRQETDPSLSAQAMGEHQRIGTSGLVEDTDPSQLPMELQEEYILDHQDQHFSMEQQQNKIIGQATHLSSQLPVMMNQAIDERHCCQPYHQNNDLSVVPMETQQQHNVVGNLASQQQLEEQNNVPVMTMNQTTEQQQPCETATTHNELFQEMDPEIASLLLVQNTTEEDAKFMASLGNF", "length": 186, "header": "tr|F4JG50-1|F4JG50_ARATH Isoform 1 of Polyhomeotic-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JG50-1" }, "isoforms": [ { "isoform_ac": "F4JG50-1", "url": "https://www.uniprot.org/uniprotkb/F4JG50/entry#F4JG50-1", "sequence": { "sequence": "MAENQNQFCRQETDPSLSAQAMGEHQRIGTSGLVEDTDPSQLPMELQEEYILDHQDQHFSMEQQQNKIIGQATHLSSQLPVMMNQAIDERHCCQPYHQNNDLSVVPMETQQQHNVVGNLASQQQLEEQNNVPVMTMNQTTEQQQPCETATTHNELFQEMDPEIASLLLVQNTTEEDAKFMASLGNF", "length": 186, "header": "tr|F4JG50-1|F4JG50_ARATH Isoform 1 of Polyhomeotic-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JG50-1" }, "locus": { "chromosome": "4", "start_pos": 752288, "end_pos": 752873, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G01735.1", "url": "https://www.ensemblgenomes.org/id/AT4G01735.1" }, { "database": "Ensembl Peptide", "id": "AT4G01735.1", "url": "https://www.ensemblgenomes.org/id/AT4G01735.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JG50", "url": "https://www.uniprot.org/uniprotkb/F4JG50" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JG50", "url": "https://www.uniprot.org/uniprotkb/F4JG50" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G01735", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G01735", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JG50-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 186, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JG50-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JG50" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 171, "end_pos": 173 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"url": "https://www.uniprot.org/uniprotkb/F4JG55" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JG55", "locus": {} } ], "crossref": [ { "id": "F4JG55", "url": "https://alphafold.ebi.ac.uk/entry/F4JG55", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G01780", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G01780", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828078", "url": "https://www.ncbi.nlm.nih.gov/gene/828078", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005379", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005379", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038588", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038588", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G01780", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G01780", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KCHETTH", "url": "https://omabrowser.org/oma/group/KCHETTH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21596", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21596", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21596:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21596:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03468", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03468", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03469", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03469", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G01780", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G01780", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JG55", "url": "https://www.uniprot.org/uniprotkb/F4JG55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JG55-1", "url": "https://www.uniprot.org/uniprotkb/F4JG55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGTRHCYGLGYEMFNFVWSSSVRFVWSSSETLFKIVIITRSLCILGKVHTLLTFKVLTFLLKIELQCVFSDCVYVAETGIVVNIPTTKAQDGRPAGESGSKLRDEYILRGLNNGLLFDKAYRVDGHGKKDWMKKDGPKLGLYGWIAGADDYNDRELKTIAELTKEEARKQQMLVKNLRQVVEEKIKDVKEIEELFDDHERLTKLLESEKKKLEIKGNELAKPQVHNGTERMKLSEDLEQRQKEELHEKIIRLERQIDQVQAIELEVEQLKGQLNVMKHMASDGDAQVVKEVDIIFKDLVEKEAELADLNKFNQTLILRERRTNDELQEARKELVNCMGELVRKPFVDAMQQKYCQEDVEDRAVEVLQLWEHYINDPDWHPYKRVKLENQDREVEVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKEDKRATLEEGVTCLLDQWEKAKRKRGMA", "length": 472, "header": "tr|F4JG55-1|F4JG55_ARATH Isoform 1 of XH/XS domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JG55-1" }, "isoforms": [ { "isoform_ac": "F4JG55-1", "url": "https://www.uniprot.org/uniprotkb/F4JG55/entry#F4JG55-1", "sequence": { "sequence": "MGGTRHCYGLGYEMFNFVWSSSVRFVWSSSETLFKIVIITRSLCILGKVHTLLTFKVLTFLLKIELQCVFSDCVYVAETGIVVNIPTTKAQDGRPAGESGSKLRDEYILRGLNNGLLFDKAYRVDGHGKKDWMKKDGPKLGLYGWIAGADDYNDRELKTIAELTKEEARKQQMLVKNLRQVVEEKIKDVKEIEELFDDHERLTKLLESEKKKLEIKGNELAKPQVHNGTERMKLSEDLEQRQKEELHEKIIRLERQIDQVQAIELEVEQLKGQLNVMKHMASDGDAQVVKEVDIIFKDLVEKEAELADLNKFNQTLILRERRTNDELQEARKELVNCMGELVRKPFVDAMQQKYCQEDVEDRAVEVLQLWEHYINDPDWHPYKRVKLENQDREVEVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKEDKRATLEEGVTCLLDQWEKAKRKRGMA", "length": 472, "header": "tr|F4JG55-1|F4JG55_ARATH Isoform 1 of XH/XS domain-containing protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JG55-1" }, "locus": { "chromosome": "4", "start_pos": 767310, "end_pos": 769246, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G01780.1", "url": "https://www.ensemblgenomes.org/id/AT4G01780.1" }, { "database": "Ensembl Peptide", "id": "AT4G01780.1", "url": "https://www.ensemblgenomes.org/id/AT4G01780.1" } ] } } ], "glycosylation": [], 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"Ensembl Transcript", "id": "AT4G03443.1", "url": "https://www.ensemblgenomes.org/id/AT4G03443.1" }, { "database": "Ensembl Peptide", "id": "AT4G03443.1", "url": "https://www.ensemblgenomes.org/id/AT4G03443.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT4G03565", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PKQDQDM", "url": "https://omabrowser.org/oma/group/PKQDQDM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31228:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31228:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_680573", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680573", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G03565", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G03565", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JG98", "url": "https://www.uniprot.org/uniprotkb/F4JG98", "database": 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"MTRRQKKTAKVVTVVMGLCIVAYIAGPSLYWHLNETIADSLHSSCPPCVCDCSSQPLLSIPDGLSNHSFLDCMRHEEGSEESESSFTEMVAEELKLREAQAQEDEWRADRLLLDAKKAASQYQKEADKCSMGMETCELAREKAEAALDEQRRLSYMWELRARQGGWKEGTVASDVI", "length": 176, "header": "tr|F4JGC5-1|F4JGC5_ARATH Isoform 1 of Transmembrane protein, putative (DUF1068) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JGC5-1" }, "isoforms": [ { "isoform_ac": "F4JGC5-1", "url": "https://www.uniprot.org/uniprotkb/F4JGC5/entry#F4JGC5-1", "sequence": { "sequence": "MTRRQKKTAKVVTVVMGLCIVAYIAGPSLYWHLNETIADSLHSSCPPCVCDCSSQPLLSIPDGLSNHSFLDCMRHEEGSEESESSFTEMVAEELKLREAQAQEDEWRADRLLLDAKKAASQYQKEADKCSMGMETCELAREKAEAALDEQRRLSYMWELRARQGGWKEGTVASDVI", "length": 176, "header": "tr|F4JGC5-1|F4JGC5_ARATH Isoform 1 of Transmembrane protein, putative (DUF1068) OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JGC5-1" }, "locus": { "chromosome": "4", "start_pos": 2133139, "end_pos": 2133935, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": 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R", "evidence": [ { "database": "UniProtKB", "id": "F4JGC5", "url": "https://www.uniprot.org/uniprotkb/F4JGC5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JGC5", "url": "https://www.uniprot.org/uniprotkb/F4JGC5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G04360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G04360", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 34, "end_pos": 36, "annotation": 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JGC8-1", "uniprot_ac": "F4JGC8", "uniprot_id": "F4JGC8_ARATH", "mass": { "chemical_mass": 26260.0, "monoisotopic_mass": 26260.0 }, "refseq": { "ac": "NP_680590", "name": "C2H2 and C2HC zinc fingers superfamily protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680590" }, "gene_names": [], "protein_names": [ { "name": "C2H2 and C2HC zinc fingers superfamily protein", "type": "synonym", "evidence": [ { "id": "NP_680590", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680590" }, { "id": "F4JGC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JGC8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JGC8", "url": 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"IPR044653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G04404", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G04404", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DHEMNEA", "url": "https://omabrowser.org/oma/group/DHEMNEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45988", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45988", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45988:SF87", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45988:SF87", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_680590", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680590", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G04404", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G04404", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JGC8", "url": "https://www.uniprot.org/uniprotkb/F4JGC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGC8-1", "url": "https://www.uniprot.org/uniprotkb/F4JGC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSIKEPYFMTEIEDHEMNEAAMSLVMFSKQVYDFDLTHGNDDDSMDLDQLKDCVESMLDFREMVSNSGMEKSTTCSDVVALRSKLQSKSSHRCQICGKSFECYQALGGHRRLHRPIKGKLARKREYYKDDNSLFDSSGPSRVEEKILDCVELKQDFGELLPLNSKFQKRPVSSCSYRCKICGKSFGCFQALGALGGHQRLHRPIKGKLARKRKYSEDDNTLVDSSETRHG", "length": 230, "header": "tr|F4JGC8-1|F4JGC8_ARATH Isoform 1 of C2H2 and C2HC zinc fingers superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGC8-1" }, "isoforms": [ { 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chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq 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"https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G05523", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JGH3", "url": "https://www.uniprot.org/uniprotkb/F4JGH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGH3-1", "url": "https://www.uniprot.org/uniprotkb/F4JGH3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRIVSEHDCPKSVEGFSYDPEPNRSFDRLVSETESFEKKLNAFTKFHQPFTKTTSRTDIAFVMRVSEDDMDSDEDVENNDQQDKEESQICTCDDLYLSDDDEFDHELEYTIMNKMGPALAENDHQTKSTEDIQNQVSVVEKEIRNEIERALSAIALVEKYRENRREVERSLDLQYKREVSEALETHMNVVKREHAIISKNYEDEFLVGGVYCRVSSALPEE", "length": 221, "header": "tr|F4JGH3-1|F4JGH3_ARATH Isoform 1 of Nucleoporin GLE1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGH3-1" }, "isoforms": [ { "isoform_ac": "F4JGH3-1", "url": "https://www.uniprot.org/uniprotkb/F4JGH3/entry#F4JGH3-1", "sequence": { "sequence": "MRIVSEHDCPKSVEGFSYDPEPNRSFDRLVSETESFEKKLNAFTKFHQPFTKTTSRTDIAFVMRVSEDDMDSDEDVENNDQQDKEESQICTCDDLYLSDDDEFDHELEYTIMNKMGPALAENDHQTKSTEDIQNQVSVVEKEIRNEIERALSAIALVEKYRENRREVERSLDLQYKREVSEALETHMNVVKREHAIISKNYEDEFLVGGVYCRVSSALPEE", "length": 221, "header": "tr|F4JGH3-1|F4JGH3_ARATH Isoform 1 of Nucleoporin GLE1-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGH3-1" }, "locus": { "chromosome": "4", "start_pos": 2808054, "end_pos": 2809025, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G05523.1", "url": "https://www.ensemblgenomes.org/id/AT4G05523.1" }, { "database": "Ensembl Peptide", "id": "AT4G05523.1", "url": "https://www.ensemblgenomes.org/id/AT4G05523.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream 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"MEISLESQGNVDDLNPLILAYVFSVGDELHFSVHSSKSISIDEQYSFRSGFFLIYLTTNTRIWKALHNGDGNLSLIKSVLQANTADTEQSVSSRNWGNHVLDIIRSANLNSSQESAILACLETREIRDKTSVKLIWGPPGTGNTKTVATLLFALLSLSCKTVVCTPTNTAVVAVASRLLALFKESSSTEHSTYGLGNIVLVGNRVRMGIDERGNDDLLNVFLDDRISKLGELFSPSNEWERSLEAVIDILENAESSYKKYLLLSERKENQETKNILTAFGEFVMKMFLGSKETPEKEEEIILTFGEFVMEKFDGLSETMKKIQKDMVDLYTHLPKSFLSSNDVKNMIVARQALRQARTFLQEKQGSFTFDCFNKFVCVDCLRTLRLLSKRFEIPALLMKEDIRTFCLQNAHIIFCTASGAAEMTAERAGSIDMLVVDEAAQLKECESVAALQLQGLHHAVLIGDELQLPAMVQSEVCEKAKFVRSLFERLDSLGHKKHLLNVQYRMHPSISLFPNMEFYGGKISDAEIVKESTYQKRFLQGNMFGSFSFINVGLGKEEFGDGHSPKNMVEIAVVSEILTNLLKVSSETKTKMSVGVISPYKAQVSAIQERIGDKYTSVSDNLFTLNVRSVDGFQGGEEDIIIISTVRSNCNGNIGFLSNRQRANVALTRARHCLWVIGNERTLSLSGSI", "length": 689, "header": "tr|F4JGH5-1|F4JGH5_ARATH Isoform 1 of P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGH5-1" }, "locus": { "chromosome": "4", "start_pos": 2818521, "end_pos": 2821065, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G05540.1", "url": "https://www.ensemblgenomes.org/id/AT4G05540.1" }, { "database": "Ensembl Peptide", "id": "AT4G05540.1", "url": "https://www.ensemblgenomes.org/id/AT4G05540.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol 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Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JGH5", "url": "https://www.uniprot.org/uniprotkb/F4JGH5" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JGH5", "url": "https://www.uniprot.org/uniprotkb/F4JGH5" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G05540", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G05540", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT4G05553", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_680606", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680606", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G05553", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G05553", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JGH6", "url": "https://www.uniprot.org/uniprotkb/F4JGH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGH6-1", "url": "https://www.uniprot.org/uniprotkb/F4JGH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCGVEESCGESKGSNVVMEVISMSEFHIPQPLMEIIVSKVGEDGVDALKNFLLTGREGRVAVCNGKRNGGFLDLNEIKVCMVQPPYQPDRVGRPRYRRCKKIGHMLSTCTE", "length": 111, "header": "tr|F4JGH6-1|F4JGH6_ARATH Isoform 1 of Zinc knuckle (CCHC-type) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGH6-1" }, "isoforms": [ { "isoform_ac": "F4JGH6-1", "url": "https://www.uniprot.org/uniprotkb/F4JGH6/entry#F4JGH6-1", "sequence": { "sequence": "MCGVEESCGESKGSNVVMEVISMSEFHIPQPLMEIIVSKVGEDGVDALKNFLLTGREGRVAVCNGKRNGGFLDLNEIKVCMVQPPYQPDRVGRPRYRRCKKIGHMLSTCTE", "length": 111, "header": "tr|F4JGH6-1|F4JGH6_ARATH Isoform 1 of Zinc knuckle (CCHC-type) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGH6-1" }, "locus": { "chromosome": "4", "start_pos": 2826047, "end_pos": 2826659, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G05553.1", "url": "https://www.ensemblgenomes.org/id/AT4G05553.1" }, { "database": "Ensembl Peptide", "id": "AT4G05553.1", "url": "https://www.ensemblgenomes.org/id/AT4G05553.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", 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"https://www.uniprot.org/uniprotkb/F4JGH9/entry#F4JGI0-1", "sequence": { "sequence": "MDFSHTIKALRSNKKLYTKPKTHTDFGYTMKVLRSNKKLDTKPKTHTDFGYTIKALYKSKNSYGLRLSHPNTKPENHKDFSYTIKALRSNKKLYKKPKTHTDFCYTIKALRSNKKFEHTKPKTQTDFGYTMKILRSNKKLDTKPKTHTDFGYTIKILRSNKKLDTKLKTHTDFGYTMKILRSDKKFDTKPKTHTDFGYTIKILRSNKKLVTKPKNHMEFSYTIKALRSNKKLYTKPKTHTDFGYTIKALRSNKKFDTKPKTHTDFGYTMKILRSNKKLATKPKTHTDFGYTIKVLRSNKKLDTKPKTHTDFGYTIKALRSNKKFDTKPKTHTDFGYTMKILRSDKKLDTKPKTHTDFVYTIKILRSNKKLDTNPKTHTDFGDTIKAL", "length": 387, "header": "tr|F4JGI0-1|F4JGI0_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGH9-1" }, "locus": { "chromosome": "4", "start_pos": 2959094, "end_pos": 2963744, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G05612.2", "url": "https://www.ensemblgenomes.org/id/AT4G05612.2" }, { "database": "Ensembl Peptide", "id": "AT4G05612.2", "url": "https://www.ensemblgenomes.org/id/AT4G05612.2" } ] } } ], 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"database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G05631", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G05631", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JGI3", "url": "https://www.uniprot.org/uniprotkb/F4JGI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGI3-1", "url": "https://www.uniprot.org/uniprotkb/F4JGI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQLVIETSRHEDSRIKKWYIQVSVRISANKKGWCFVRWFQETSVMVEEIQYKGVKSQIESFSRSKLLKSKETVGVATKWKELWIYQVIRFIQSSAQGFMIENYRDSDKEAVRSASGALELRSFSVILSTKTRSEYTGFSTHQSFENGMLDGSSDIGDGKRQVQGLAKNLSAVHSPQGFKSVGLKGFADSEGFRTRLSKKSCIGSFPFSVKIGVVKVRASLKGSKEQLRGSLQNETDKRSVTTRLRKSTRDVSLELEVERVTGFVLVSERKLESDCNPVSDCNGHLYELEFEL", "length": 293, "header": "tr|F4JGI3-1|F4JGI3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGI3-1" }, "isoforms": [ { "isoform_ac": "F4JGI3-1", "url": "https://www.uniprot.org/uniprotkb/F4JGI3/entry#F4JGI3-1", "sequence": { "sequence": "MDQLVIETSRHEDSRIKKWYIQVSVRISANKKGWCFVRWFQETSVMVEEIQYKGVKSQIESFSRSKLLKSKETVGVATKWKELWIYQVIRFIQSSAQGFMIENYRDSDKEAVRSASGALELRSFSVILSTKTRSEYTGFSTHQSFENGMLDGSSDIGDGKRQVQGLAKNLSAVHSPQGFKSVGLKGFADSEGFRTRLSKKSCIGSFPFSVKIGVVKVRASLKGSKEQLRGSLQNETDKRSVTTRLRKSTRDVSLELEVERVTGFVLVSERKLESDCNPVSDCNGHLYELEFEL", "length": 293, "header": "tr|F4JGI3-1|F4JGI3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGI3-1" }, "locus": { "chromosome": "4", "start_pos": 2990006, "end_pos": 2992618, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G05631.1", "url": "https://www.ensemblgenomes.org/id/AT4G05631.1" }, { "database": "Ensembl Peptide", "id": "AT4G05631.1", "url": "https://www.ensemblgenomes.org/id/AT4G05631.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 231, "end_pos": 231, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JGI3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JGI3" } ], "site_lbl": "Ser231" }, { "start_pos": 236, "end_pos": 236, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JGI3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JGI3" } ], "site_lbl": "Thr236" }, { "start_pos": 52, "end_pos": 52, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JGI3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JGI3" } ], "site_lbl": "Tyr52" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JGI3", "url": "https://www.uniprot.org/uniprotkb/F4JGI3" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JGI3", "url": "https://www.uniprot.org/uniprotkb/F4JGI3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G05631", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G05631", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JGI3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 293, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JGI3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JGI3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 52, 231, 236 ], "sequon_annotation_sites": [ { "start_pos": 169, "end_pos": 171 }, { "start_pos": 234, "end_pos": 236 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JGI4-1", "uniprot_ac": "F4JGI4", "uniprot_id": "F4JGI4_ARATH", "mass": { "chemical_mass": 22215.0, "monoisotopic_mass": 22215.0 }, "refseq": { "ac": "NP_680611", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680611" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4JGI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JGI4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_680611", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680611" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JGI4", "url": "https://www.uniprot.org/uniprotkb/F4JGI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JGI4", "locus": {} } ], "crossref": [ { "id": "F4JGI4", "url": "https://alphafold.ebi.ac.uk/entry/F4JGI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "825937", "url": "https://www.ncbi.nlm.nih.gov/gene/825937", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G05632", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G05632", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_680611", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680611", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G05632", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G05632", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JGI4", "url": "https://www.uniprot.org/uniprotkb/F4JGI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGI4-1", "url": "https://www.uniprot.org/uniprotkb/F4JGI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDARVNDNNAIIWPCERSFPSNQVNNPLLATKSTSDVPHGTTTTCILVASSCNTRPLGSDLVSLSRTKQGSALEHHKLYMHLTKLRQSVLEASSIHDRNDNVDRELLVDREDFIYLRKLIVGWFMETATPFGIQSSTSTVGFRSGRHFTKILNLSLSLSRFLFSSKAFVLLIEEEIRPMMDKCRVLGDAKPTRTLFL", "length": 197, "header": "tr|F4JGI4-1|F4JGI4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGI4-1" }, "isoforms": [ { "isoform_ac": "F4JGI4-1", "url": "https://www.uniprot.org/uniprotkb/F4JGI4/entry#F4JGI4-1", "sequence": { "sequence": "MDARVNDNNAIIWPCERSFPSNQVNNPLLATKSTSDVPHGTTTTCILVASSCNTRPLGSDLVSLSRTKQGSALEHHKLYMHLTKLRQSVLEASSIHDRNDNVDRELLVDREDFIYLRKLIVGWFMETATPFGIQSSTSTVGFRSGRHFTKILNLSLSLSRFLFSSKAFVLLIEEEIRPMMDKCRVLGDAKPTRTLFL", "length": 197, "header": "tr|F4JGI4-1|F4JGI4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGI4-1" }, "locus": { "chromosome": "4", "start_pos": 3001664, "end_pos": 3002411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G05632.1", "url": "https://www.ensemblgenomes.org/id/AT4G05632.1" }, { "database": "Ensembl Peptide", "id": "AT4G05632.1", "url": "https://www.ensemblgenomes.org/id/AT4G05632.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JGI6-1", "uniprot_ac": "F4JGI6", "uniprot_id": "F4JGI6_ARATH", "mass": { "chemical_mass": 16649.0, "monoisotopic_mass": 16649.0 }, "refseq": { "ac": "NP_849308", "name": "hypothetical protein (DUF3287)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_849308" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4JGI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JGI6/entry#names_and_taxonomy" } ] }, { "name": "hypothetical 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"https://www.ncbi.nlm.nih.gov/gene/825962", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021704", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021704", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G06490", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G06490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PF11690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_849308", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_849308", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G06490", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G06490", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JGI6", "url": "https://www.uniprot.org/uniprotkb/F4JGI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGI6-1", "url": "https://www.uniprot.org/uniprotkb/F4JGI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQVNLRCSESMLDFSRVGMMEEDIPNVPGRGTSPPHGYLRSQILALCVMIKGLLDRDQEIAMAFIKALAVQHQKRTMERRNIRKKINRMLLRVTAITRELHNLNSHPGDWIELGISKFARIPDCMMSNLDLAGQGVQVFCKSRRVS", "length": 146, "header": "tr|F4JGI6-1|F4JGI6_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGI6-1" }, "isoforms": [ { "isoform_ac": "F4JGI6-1", "url": "https://www.uniprot.org/uniprotkb/F4JGI6/entry#F4JGI6-1", "sequence": { "sequence": "MQVNLRCSESMLDFSRVGMMEEDIPNVPGRGTSPPHGYLRSQILALCVMIKGLLDRDQEIAMAFIKALAVQHQKRTMERRNIRKKINRMLLRVTAITRELHNLNSHPGDWIELGISKFARIPDCMMSNLDLAGQGVQVFCKSRRVS", "length": 146, "header": "tr|F4JGI6-1|F4JGI6_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGI6-1" }, "locus": { "chromosome": "4", "start_pos": 3116894, "end_pos": 3117334, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G06490.1", "url": "https://www.ensemblgenomes.org/id/AT4G06490.1" }, { "database": "Ensembl Peptide", "id": "AT4G06490.1", "url": "https://www.ensemblgenomes.org/id/AT4G06490.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, 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Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JGI6", "url": "https://www.uniprot.org/uniprotkb/F4JGI6" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JGI6", "url": "https://www.uniprot.org/uniprotkb/F4JGI6" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G06490", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G06490", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JGI6", "url": "https://www.uniprot.org/uniprotkb/F4JGI6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JGI6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 146, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JGI6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JGI6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JGI7-1", "uniprot_ac": "F4JGI7", "uniprot_id": "F4JGI7_ARATH", "mass": { "chemical_mass": 55689.0, "monoisotopic_mass": 55689.0 }, "refseq": { "ac": "NP_849310", "name": "nucleic acid binding / zinc ion binding protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_849310" }, "gene_names": [], "protein_names": [ { "name": "Nucleic acid binding / zinc ion binding protein", "type": "synonym", "evidence": [ { "id": "F4JGI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JGI7/entry#names_and_taxonomy" } ] }, { "name": "nucleic acid binding / zinc ion binding protein", "type": "synonym", "evidence": [ { "id": "NP_849310", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_849310" } ] } ], "function": [], 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"https://www.genome.jp/dbget-bin/www_bget?ath:AT4G06526", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_849310", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_849310", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G06526", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G06526", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JGI7", "url": "https://www.uniprot.org/uniprotkb/F4JGI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGI7-1", "url": "https://www.uniprot.org/uniprotkb/F4JGI7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSTKGSNIVSPLHGLNVPNLENFVLPSSIDDENVDNHDGMLSSEEANHVEWMITEDGELYAVPTENATEEQACDSLNNILSRFYVPSTDEEGSFSVPNMGTIGEHGLELEEVNGDMFDVPLIQANGAFGAMNKYGDDDEYDMLMLMGNDEEDESGVIENEIENELEQAIDKLIAYKADSCWEGEMFKGNEPSEDEGNGRLDEEKSKGKLVDKAEENERWKGKRAAEMGMESEKAKDQRIVGVNPLPLGMEYGINTKVKPRIQATARKSVGKKLATPAKRPCEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCPYVAPNASEGSSRGVRPLMTTVAEEKCLNEGMPSFLWVRRFKTFVKMMGEFIEVGNDQSQLTAYAQTLPKLQRAKMSMNGHEWAKMGKVGRAAAKFALPAAELTWVGHLTRGALRLNRSLWGGGVTPVATCRQALLSGWLYEKFHLVEVGPETPVACGHDICSDMWQQAGIVDCGLGDSPET", "length": 506, "header": "tr|F4JGI7-1|F4JGI7_ARATH Isoform 1 of Nucleic acid binding / zinc ion binding protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGI7-1" }, "isoforms": [ { "isoform_ac": "F4JGI7-1", "url": "https://www.uniprot.org/uniprotkb/F4JGI7/entry#F4JGI7-1", "sequence": { "sequence": 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"header": "tr|F4JGJ1-1|F4JGJ2_ARATH Computationally mapped isoform of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGJ2-1" }, "locus": { "chromosome": "4", "start_pos": 3576112, "end_pos": 3576529, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G06583.1", "url": "https://www.ensemblgenomes.org/id/AT4G06583.1" }, { "database": "Ensembl Peptide", "id": "AT4G06583.1", "url": "https://www.ensemblgenomes.org/id/AT4G06583.1" } ] } }, { "isoform_ac": "F4JGJ2-1", "url": "https://www.uniprot.org/uniprotkb/F4JGJ2/entry#F4JGJ2-1", "sequence": { "sequence": "MENEGASTVCPLDPGSPLFLSSDGFEPACVLFPHACFHFPSKDKKEAYDFMDKVVDKHHRLCDERQRLGLKRQTLEARIARIERKVRAMESDPF", "length": 94, "header": "tr|F4JGJ2-1|F4JGJ2_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGJ2-1" }, "locus": { "chromosome": "4", "start_pos": 3576112, "end_pos": 3576681, "strand": "+", "evidence": [ { "database": "Ensembl 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Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JGJ5-1", "uniprot_ac": "F4JGJ5", "uniprot_id": "F4JGJ5_ARATH", "mass": { "chemical_mass": 37728.0, "monoisotopic_mass": 37728.0 }, "refseq": { "ac": "NP_680631", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680631" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4JGJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JGJ5/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_680631", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680631" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JGJ5", "url": "https://www.uniprot.org/uniprotkb/F4JGJ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JGJ5", "locus": {} } ], "crossref": [ { "id": "F4JGJ5", "url": "https://alphafold.ebi.ac.uk/entry/F4JGJ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G07666", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G07666", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "826234", "url": "https://www.ncbi.nlm.nih.gov/gene/826234", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G07666", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G07666", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" 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1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGJ5-1" }, "isoforms": [ { "isoform_ac": "F4JGJ5-1", "url": "https://www.uniprot.org/uniprotkb/F4JGJ5/entry#F4JGJ5-1", "sequence": { "sequence": "MDATSKEVGHKVTTPKDVENDISLEEQLSETTSSQVWRNKMYDQAALKARVIQPCLAPADLASKIPHIKANLIPNTIHGTQDEIVTNNILLQEEPPDQPLNQQIVLTPKDTLIEDLSQEPPDFKAQNREGVKQAIPQVRVPDQKRGVILSFLLNGEPPNALCITKLQPYQGKGYDADIQIKPNRDHTKPVGTFIKPIDEEHFGGLLPNWSLNQAQCLGLINHQQINPKKTNDGSSGVKDQGAESSYYGNMTVALFFPYLGFVPMGLLRKVFNEAKSSHQGIIYQANDSKISKVHEADVLADRPAELPAELSSEEPAELLLAIYGAKGDQLATTLSLFVRAIM", "length": 342, "header": "tr|F4JGJ5-1|F4JGJ5_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGJ5-1" }, "locus": { "chromosome": "4", "start_pos": 4456702, "end_pos": 4458842, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G07666.1", "url": "https://www.ensemblgenomes.org/id/AT4G07666.1" }, { "database": "Ensembl Peptide", "id": "AT4G07666.1", "url": "https://www.ensemblgenomes.org/id/AT4G07666.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, 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"https://www.uniprot.org/uniprotkb/F4JGK4/entry#F4JGK4-1", "sequence": { "sequence": "MTNGKHFAWCPTKGLGILVYSLQLHASRLAFLDHTRTGISDYHSQDLAMDHKGLDGKGCYNAGHGLSTRPSRPNSRCRGSLTLCTAFVLHAYYGRTADVLRAYYRHTAGVLQGYYGHTAGVLRSDPFQWEWRNFYFIAKILTMLYMYLRARGQVPGLVNAPVEEVLSDSEEDDEEEDSNPWKRVKNEPEEMQNRR", "length": 195, "header": "tr|F4JGK4-1|F4JGK4_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGK4-1" }, "locus": { "chromosome": "4", "start_pos": 4732198, "end_pos": 4733424, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G07932.1", "url": "https://www.ensemblgenomes.org/id/AT4G07932.1" }, { "database": "Ensembl Peptide", "id": "AT4G07932.1", "url": "https://www.ensemblgenomes.org/id/AT4G07932.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 21, "end_pos": 21, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JGK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JGK4" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser21" }, { "start_pos": 27, "end_pos": 27, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JGK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JGK4" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser27" }, { "start_pos": 2, "end_pos": 2, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JGK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JGK4" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr2" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JGK4", "url": "https://www.uniprot.org/uniprotkb/F4JGK4" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JGK4", "url": "https://www.uniprot.org/uniprotkb/F4JGK4" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "F4JGK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JGK4" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "pathway": [ { "id": "ath:AT4G07932", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G07932", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JGK4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 195, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JGK4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JGK4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [ 2, 21, 27 ], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { 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"id": "ath:AT4G04972", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G04972", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HRDIMED", "url": "https://omabrowser.org/oma/group/HRDIMED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "NP_001190677", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190677", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G04972", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G04972", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JGK7", "url": "https://www.uniprot.org/uniprotkb/F4JGK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JGK7-1", "url": "https://www.uniprot.org/uniprotkb/F4JGK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKDNMIMFSYELSSSSLMEVNKEEIPQVQNPFQFEEDKEETSLGKRKIDTIIKTEDEREVKRIAFFSQEPLEEEEEEEEDIDMIEEDTEREDHRDNSDKIMEDNVLEEESVVDFYGFF", "length": 119, "header": "tr|F4JGK7-1|F4JGK7_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGK7-1" }, "isoforms": [ { "isoform_ac": "F4JGK7-1", "url": "https://www.uniprot.org/uniprotkb/F4JGK7/entry#F4JGK7-1", "sequence": { "sequence": "MSKDNMIMFSYELSSSSLMEVNKEEIPQVQNPFQFEEDKEETSLGKRKIDTIIKTEDEREVKRIAFFSQEPLEEEEEEEEDIDMIEEDTEREDHRDNSDKIMEDNVLEEESVVDFYGFF", "length": 119, "header": "tr|F4JGK7-1|F4JGK7_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JGK7-1" }, "locus": { "chromosome": "4", "start_pos": 2543422, "end_pos": 2544249, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G04972.1", "url": "https://www.ensemblgenomes.org/id/AT4G04972.1" }, { "database": "Ensembl Peptide", "id": "AT4G04972.1", "url": 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"PTHR30566", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR30566", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR30566:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR30566:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_567158", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_567158", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G00234", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G00234", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JH25", "url": "https://www.uniprot.org/uniprotkb/F4JH25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JH25-1", "url": "https://www.uniprot.org/uniprotkb/F4JH25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISFSSNIRLHSDAKPFNYLSHSSYARAFSSKSDDFGSIVASGVTGSGDGNGNDWVEKAKDVVQTSVNAVAETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTVTGTLFAWIVMPRILRRFHTYAMQSSAKLLPVGFSNEDIPYEKSFWGALEDPARYLVTFIAFAQIAAMVAPTTIAAQYFSPTVKGAVILSVVWFLYRWKTNVITRMLSAKSFGGLDRDKVLTLDKVSSVGLFAIGLMASAEACGVAVQSILTVGE", "length": 263, "header": "tr|F4JH25-1|F4JH25_ARATH Isoform 1 of Mechanosensitive ion channel-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JH25-1" }, "isoforms": [ { "isoform_ac": "F4JH25-1", "url": "https://www.uniprot.org/uniprotkb/F4JH25/entry#F4JH25-1", "sequence": { "sequence": "MISFSSNIRLHSDAKPFNYLSHSSYARAFSSKSDDFGSIVASGVTGSGDGNGNDWVEKAKDVVQTSVNAVAETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTVTGTLFAWIVMPRILRRFHTYAMQSSAKLLPVGFSNEDIPYEKSFWGALEDPARYLVTFIAFAQIAAMVAPTTIAAQYFSPTVKGAVILSVVWFLYRWKTNVITRMLSAKSFGGLDRDKVLTLDKVSSVGLFAIGLMASAEACGVAVQSILTVGE", "length": 263, "header": "tr|F4JH25-1|F4JH25_ARATH Isoform 1 of Mechanosensitive ion channel-like protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JH25-1" }, "locus": { "chromosome": "4", "start_pos": 100919, "end_pos": 101788, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00234.1", "url": "https://www.ensemblgenomes.org/id/AT4G00234.1" }, { "database": "Ensembl Peptide", "id": "AT4G00234.1", "url": "https://www.ensemblgenomes.org/id/AT4G00234.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JH25", "url": "https://www.uniprot.org/uniprotkb/F4JH25" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JH25", "url": "https://www.uniprot.org/uniprotkb/F4JH25" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G00234", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G00234", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JH25", "url": "https://www.uniprot.org/uniprotkb/F4JH25" } ], "pmid": "" }, { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "F4JH25", "url": "https://www.uniprot.org/uniprotkb/F4JH25" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular response to oxidative stress", "id": "GO:0034599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034599", "evidence": [ { "database": "UniProtKB", "id": "F4JH25", "url": "https://www.uniprot.org/uniprotkb/F4JH25" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mechanosensitive monoatomic ion channel activity", "id": "GO:0008381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008381", "evidence": [ { "database": "UniProtKB", "id": "F4JH25", "url": "https://www.uniprot.org/uniprotkb/F4JH25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JH25-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 263, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JH25-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JH25" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JH56-1", "uniprot_ac": "F4JH56", "uniprot_id": "F4JH56_ARATH", "mass": { "chemical_mass": 32085.0, "monoisotopic_mass": 32085.0 }, "refseq": { "ac": "NP_680558", "name": "Cysteine/Histidine-rich C1 domain family protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680558" }, "gene_names": [], "protein_names": [ { "name": "Cysteine/Histidine-rich C1 domain family protein", "type": "synonym", "evidence": [ { "id": "NP_680558", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680558" }, { "id": "F4JH56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JH56/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JH56", "url": "https://www.uniprot.org/uniprotkb/F4JH56" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JH56", "locus": {} } ], "crossref": [ { "id": "F4JH56", "url": "https://alphafold.ebi.ac.uk/entry/F4JH56", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G01925", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G01925", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828202", "url": "https://www.ncbi.nlm.nih.gov/gene/828202", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G01925", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G01925", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FHESNIM", "url": "https://omabrowser.org/oma/group/FHESNIM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32410:SF154", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32410:SF154", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03107", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03107", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_680558", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680558", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G01925", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G01925", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JH56", "url": "https://www.uniprot.org/uniprotkb/F4JH56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JH56-1", "url": "https://www.uniprot.org/uniprotkb/F4JH56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWEECELHFHVDCVWHPTELKHPLEVNHPYHALHPLKLLTARFPDYSDGKCRLCGSKIDDRLFYHCSSCNFTLGLCCVLRPPQPSLLNLKAHDHQLTLLPRLDSFTCNACGLKGDRSPYICFQCGFMIHQDCLGPPRLININRHDHRVVRTSVLGVVNSVCGVCRQKVDWTCGGFSCQRCPDYVAHSKCATREDVWNGEELEGVPEEIEDIEPYVVIDDNTIQHFSHKEHYLRLHDNGLLCDDNKRCCELRCIFPIILKRLGASQKYCCSPYCANAMSVN", "length": 280, "header": "tr|F4JH56-1|F4JH56_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JH56-1" }, "isoforms": [ { "isoform_ac": "F4JH56-1", "url": "https://www.uniprot.org/uniprotkb/F4JH56/entry#F4JH56-1", "sequence": { "sequence": "MWEECELHFHVDCVWHPTELKHPLEVNHPYHALHPLKLLTARFPDYSDGKCRLCGSKIDDRLFYHCSSCNFTLGLCCVLRPPQPSLLNLKAHDHQLTLLPRLDSFTCNACGLKGDRSPYICFQCGFMIHQDCLGPPRLININRHDHRVVRTSVLGVVNSVCGVCRQKVDWTCGGFSCQRCPDYVAHSKCATREDVWNGEELEGVPEEIEDIEPYVVIDDNTIQHFSHKEHYLRLHDNGLLCDDNKRCCELRCIFPIILKRLGASQKYCCSPYCANAMSVN", "length": 280, "header": "tr|F4JH56-1|F4JH56_ARATH Isoform 1 of Cysteine/Histidine-rich C1 domain family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JH56-1" }, "locus": { "chromosome": "4", "start_pos": 833063, "end_pos": 834340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G01925.1", "url": "https://www.ensemblgenomes.org/id/AT4G01925.1" }, { "database": "Ensembl Peptide", "id": "AT4G01925.1", "url": 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Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JHA1", "url": "https://www.uniprot.org/uniprotkb/F4JHA1" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JHA1", "url": "https://www.uniprot.org/uniprotkb/F4JHA1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G02250", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G02250", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F4JHA1", "url": "https://www.uniprot.org/uniprotkb/F4JHA1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pectinesterase activity", "id": "GO:0030599", "url": 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"synonym", "evidence": [ { "id": "F4JHD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHD7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JHD7", "url": "https://www.uniprot.org/uniprotkb/F4JHD7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JHD7", "locus": {} } ], "crossref": [ { "id": "F4JHD7", "url": "https://alphafold.ebi.ac.uk/entry/F4JHD7", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G00560", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G00560", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "cd05254", "url": 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"Protein Classification" ] }, { "id": "PTHR43242:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43242:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "AT4G00560", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G00560", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JHD6", "url": "https://www.uniprot.org/uniprotkb/F4JHD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JHD6-1", "url": "https://www.uniprot.org/uniprotkb/F4JHD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JHD7", "url": "https://www.uniprot.org/uniprotkb/F4JHD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JHD7-1", "url": "https://www.uniprot.org/uniprotkb/F4JHD7-1", "database": 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"MEKKTKVLIVGGTGYLGQHLLQAFAGNYGGECELYDVAFTHHSSPLPARLLDAFPHSPAFPVDLKSGLGLNSISQDFRQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWLSSFETNKTLLIHLSTDQVYQGVKSFYKEEDETVAVNVYGKSKVAAELLIKDKCQSFAILRSSIIFGPQTVSPLPKTLPIQWIDSSLKKGDTVDFFHDEFRCPIYVKDLVNITFKLIDRWVSDDKQMRLVLNAGGPERLSRVQMAQMVAEVRGYDLSLIKHVSASSLFCQIDRGVVSPADISMDITKLIHTLELSPTSFKEGVRLTLDSESHSHMLP", "length": 331, "header": "tr|F4JHD7-1|F4JHD7_ARATH Isoform 1 of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JHD7-1" }, "locus": { "chromosome": "4", "start_pos": 240660, "end_pos": 242351, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00560.4", "url": "https://www.ensemblgenomes.org/id/AT4G00560.4" }, { "database": "Ensembl Peptide", "id": "AT4G00560.4", "url": "https://www.ensemblgenomes.org/id/AT4G00560.4" } ] } }, { "isoform_ac": "F4JHD8-1", "url": "https://www.uniprot.org/uniprotkb/F4JHD7/entry#F4JHD8-1", "sequence": { "sequence": "MEKKTKVLIVGGTGYLGQHLLQAFAGNYGGECELYDVAFTHHSSPLPARLLDAFPHSPAFPVDLKSGLGLNSISQDFRQPDVVVNCAALSVPRACEQDPDSAMSINVPTSLVNWLSSFETNKTLLIHLSTDQVYQGVKSFYKEEDETVAVNVYGKSKVAAELLIKDKCQSFAILRSSIIFGPQTVSPLPKTLPIQMINRCG", "length": 201, "header": "tr|F4JHD8-1|F4JHD8_ARATH Computationally mapped isoform of NAD(P)-binding Rossmann-fold superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JHD7-1" }, "locus": { "chromosome": "4", "start_pos": 240634, "end_pos": 242497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00560.2", "url": "https://www.ensemblgenomes.org/id/AT4G00560.2" }, { "database": "Ensembl Peptide", "id": "AT4G00560.2", "url": "https://www.ensemblgenomes.org/id/AT4G00560.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, 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[], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JHF7", "url": "https://www.uniprot.org/uniprotkb/F4JHF7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JHF7", "locus": {} } ], "crossref": [ { "id": "AT4G00695", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G00695", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828033", "url": "https://www.ncbi.nlm.nih.gov/gene/828033", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G00695", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G00695", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR48237", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48237", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48237:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48237:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001190646", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001190646", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G00695", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G00695", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JHF7", "url": "https://www.uniprot.org/uniprotkb/F4JHF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JHF7-1", "url": "https://www.uniprot.org/uniprotkb/F4JHF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEELSQILKNNRTDDLTWFCSLSESELDLLISLKKLVIRRAKVSGLEDLVADKFDLKMLRSLGLVLMEYVRKRVEDDTSLAPSVVQELSLLDSCNLLKTHVDDTVDIEEILTDICNKNWATKGTRVKIRRRFSKQPGNFHGNRGMTNIVSTVE", "length": 153, "header": "tr|F4JHF7-1|F4JHF7_ARATH Isoform 1 of Spc97/Spc98 family of spindle pole body (SBP) component OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JHF7-1" }, "isoforms": [ { "isoform_ac": "F4JHF7-1", "url": "https://www.uniprot.org/uniprotkb/F4JHF7/entry#F4JHF7-1", "sequence": { "sequence": "MEELSQILKNNRTDDLTWFCSLSESELDLLISLKKLVIRRAKVSGLEDLVADKFDLKMLRSLGLVLMEYVRKRVEDDTSLAPSVVQELSLLDSCNLLKTHVDDTVDIEEILTDICNKNWATKGTRVKIRRRFSKQPGNFHGNRGMTNIVSTVE", "length": 153, "header": "tr|F4JHF7-1|F4JHF7_ARATH Isoform 1 of Spc97/Spc98 family of spindle pole body (SBP) component OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JHF7-1" }, "locus": { "chromosome": "4", "start_pos": 283592, "end_pos": 285975, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G00695.3", "url": "https://www.ensemblgenomes.org/id/AT4G00695.3" }, { "database": "Ensembl Peptide", "id": "AT4G00695.3", "url": "https://www.ensemblgenomes.org/id/AT4G00695.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JHF7", "url": "https://www.uniprot.org/uniprotkb/F4JHF7" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JHF7", "url": "https://www.uniprot.org/uniprotkb/F4JHF7" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G00695", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G00695", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F4JHF7", "url": "https://www.uniprot.org/uniprotkb/F4JHF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHI1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JHI1", "url": "https://www.uniprot.org/uniprotkb/F4JHI1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JHI1", "locus": {} } ], "crossref": [ { "id": "F4JHI1", "url": "https://alphafold.ebi.ac.uk/entry/F4JHI1", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G02400", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G02400", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "828039", "url": "https://www.ncbi.nlm.nih.gov/gene/828039", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ath:AT4G02400", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G02400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QVIEPMD", "url": "https://omabrowser.org/oma/group/QVIEPMD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14150", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14150", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14150:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14150:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": 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"MGEKRKSTSKTLAKNKKRKGPHLPNSILKTIANEKRPLNSDEDDDEIDSDDENVDLYEYEEGVPEEESKKNNRYDRVDNYDYELPEDFEDENVESDDDEDGGNSENEEGEGDDDRHTRMLQGLTGMPSAAFQEESKKRPVLYTEAYPESEFNPTRDVLEGKGLISVEDLLAPLEGKPGFNDLNKRINRMQKDTQSVVHAPLPKPERERLERKAVKGLVEKDFNKWVHLVKRNREAPTVYFNQPVNVGYSTVGAIASEFQPRTEFEKKMASVLKDNELGEAHKEDGAKLLELNEVSMEDHIKYRDHIAKMRSLLFRHELKSKRIKKIKSKTYHRLKGKDLKKSAMGALMDPEMAKEEAIKQETRRVEERMTLKHKNTGKWAKRMLSRGLTERYDGTRAAISEQLQINATLSRKMNSTNDGSSSDESDDEEELSCGSDQDTPSKLIAKAREKTLKTMEDDDVPNSGLLSLPFMARAMKKKNEEANEEAKRAFGEYKELENFGGEDNPKKSADVSGRRVFGATSKVEAPKESKKDSDNFYDNSDSDNDMEGIENNDLGAVGDTASPARNTGAITETEKCCGDVENPASKTTFDVALFASGSWKKMKGSQNAESKKAPKTRVPISKGQDKKESRDEESEDSESEAEQMVDGILTSASKETYEIPSQAELIQRAFAGDDVVEEFEKDKQEVLNQEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHEDANKKRKLDLKTRKDYRLRNVIISEKVDKKADKLHTTTLPFPYTSKEVFEHSMRMPIGPEFNPATIVGALNRPEVVKKAGVIIKPVKFEEVNPNEKADDENPRSHQKQRPKKGSKTSKGQGKNKSKLKTKA", "length": 855, "header": "tr|F4JHI1-1|F4JHI1_ARATH Isoform 1 of U3 ribonucleoprotein (Utp) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JHI1-1" }, "isoforms": [ { "isoform_ac": "F4JHI1-1", "url": "https://www.uniprot.org/uniprotkb/F4JHI1/entry#F4JHI1-1", "sequence": { "sequence": "MGEKRKSTSKTLAKNKKRKGPHLPNSILKTIANEKRPLNSDEDDDEIDSDDENVDLYEYEEGVPEEESKKNNRYDRVDNYDYELPEDFEDENVESDDDEDGGNSENEEGEGDDDRHTRMLQGLTGMPSAAFQEESKKRPVLYTEAYPESEFNPTRDVLEGKGLISVEDLLAPLEGKPGFNDLNKRINRMQKDTQSVVHAPLPKPERERLERKAVKGLVEKDFNKWVHLVKRNREAPTVYFNQPVNVGYSTVGAIASEFQPRTEFEKKMASVLKDNELGEAHKEDGAKLLELNEVSMEDHIKYRDHIAKMRSLLFRHELKSKRIKKIKSKTYHRLKGKDLKKSAMGALMDPEMAKEEAIKQETRRVEERMTLKHKNTGKWAKRMLSRGLTERYDGTRAAISEQLQINATLSRKMNSTNDGSSSDESDDEEELSCGSDQDTPSKLIAKAREKTLKTMEDDDVPNSGLLSLPFMARAMKKKNEEANEEAKRAFGEYKELENFGGEDNPKKSADVSGRRVFGATSKVEAPKESKKDSDNFYDNSDSDNDMEGIENNDLGAVGDTASPARNTGAITETEKCCGDVENPASKTTFDVALFASGSWKKMKGSQNAESKKAPKTRVPISKGQDKKESRDEESEDSESEAEQMVDGILTSASKETYEIPSQAELIQRAFAGDDVVEEFEKDKQEVLNQEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHEDANKKRKLDLKTRKDYRLRNVIISEKVDKKADKLHTTTLPFPYTSKEVFEHSMRMPIGPEFNPATIVGALNRPEVVKKAGVIIKPVKFEEVNPNEKADDENPRSHQKQRPKKGSKTSKGQGKNKSKLKTKA", "length": 855, "header": "tr|F4JHI1-1|F4JHI1_ARATH Isoform 1 of U3 ribonucleoprotein (Utp) family protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=F4JHI1-1" }, "locus": { "chromosome": "4", "start_pos": 1054199, "end_pos": 1057998, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G02400.1", "url": "https://www.ensemblgenomes.org/id/AT4G02400.1" }, { "database": "Ensembl Peptide", "id": "AT4G02400.1", "url": "https://www.ensemblgenomes.org/id/AT4G02400.1" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 40, "end_pos": 40, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHI1" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser40" }, { "start_pos": 49, "end_pos": 49, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHI1" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser49" }, { "start_pos": 634, "end_pos": 634, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHI1" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser634" }, { "start_pos": 637, "end_pos": 637, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHI1" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser637" }, { "start_pos": 639, "end_pos": 639, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "F4JHI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHI1" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser639" } ], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JHI1", "url": "https://www.uniprot.org/uniprotkb/F4JHI1" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "F4JHI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHI1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "F4JHI1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHI1" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JHI1", "url": "https://www.uniprot.org/uniprotkb/F4JHI1" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G02400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G02400", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AJ81-1", "protein_name": "UTP14A small subunit processome component", "gene_name": "Utp14a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSCVIGGSKNCFAAGKEVALSLASVLDPCELPATKMSAIKATKGLLALSQQDDLMDLPTNYPLSDSEDEAGSDGERKHQKLLEAIGSLSGKNRWKLPERSEAGLKVSEFNVSSEGSGEKLALSDLLEPLKSSSSLAAVKKQLNRVKSKKTLELPLHKGEVERVHREVAFSNTSQALSKWDSVVQKNRAAEQLVFPLEKEPTFVPMEHVFCEWKARSPLEQEIFNLLHKNKQPVTDPLLTPVEKASLKAMSLEEAKIRRAELQRARALQSYYEARARRMKKIKSKKAVEAGESALQKSGGGSESQPCQVPYWLPPSQPALVAILAPVYHKIVKKGKAQKALKDFEQLRKVDPDAALEELEKMEKARMLERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVVSESEEERDAEEEEALVPDIVNEVQKAAHGPNPWMLRSCNHDAKENEIQADPEQLPEPAAPEFSKNEGDEKPVAEEGKLLEELEKRRSLRKRSELNHDAEPARDQKPKDSTNQEVLSELRALSKKLSKENHPFEKQKESPAKTVGLVQEEEPGPEEDEPLLLQRPERVRTLEELEELGKEYSLPNKELSRPSVEGEQMRTNPQNQTKGKNKKEQMISLQNLLTTRTPSVTSLALPTTVEELDDEVKRNQKQMIKEAFAGDDVIKEFLKEKREAVQANKPKDVDLTLPGWGEWGGMDLKPSAKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNIHIAAHQVRVLPYPFTHHQQFERTIQNPIGSTWITQRAFQKLTAPKVVTKPGHIIKPITADDVGRQSSPRSDLSVMQTNPKRHCKHQKQLKKKAL", "length": 841 }, "evidence": [ { "id": "F4JHI1", "url": "https://omabrowser.org/oma/group/F4JHI1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2CEY8-1", "protein_name": "Uncharacterized protein LOC553498", "gene_name": "si:dkey-251i10.3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVKRSSLQKTTPSEGVTSAMAADSGDEEELYTDPEQAISASEDEEGSDDERKHNKLLEAISSMGGRKRKKQSERSEASVQVSEFFVNAEGAGDKINLSDLLGVVEKTAGASNKTKKQLRNLQSTKETLELPLNKQQKEKIQRGIAYVKTAEEVSNWQNIIVQNQRAEQMVFPLKQEPSGPKRVEQVVAGWKVKTPLEQEIFQLLHSNSQPVLDPVLTPVEEASLKAMSLEEAKIRRAELQKARALQSYYEAKAKREKKIKSKQYHRVQKKAKRKEFLKQFDEMVKSNPQEALEELKKMEMSRMQERMSLKHQNSGKWAKSKAIMAKYDDSARKAMQEQLQMNKDLTQKIVVLSDDEQADEDLEAVPDFVNDPEPIIDPVNPWMRGQLTQEEPEVSCVTTDELQAAEEEKEDEEEELLGEFERKRKMRQADEAEDLIPTEEKTEHVSEVAGEDVVEISDNDDEEEEDDDDDEEEEKEEEEEEEEEDVSKFNSLFNLMRSEKTQKGQEDGEELLDEGQVRVRNMEDLEDLGEGFEPQPSTTPSVTQTAIADKTSEPQNKKGISLSEVLTKEAKVIKVPFLPTVVEHEETEHDEQLSIIKEAFAGDDVISDFMKDKKKQEEAGRPKVVDLTLPGWGEWGGIGLKPSRRKRKRFTKKMDPPPPRQDRKLPDVIISEKRNTSIAAHQVSHLPFPYENPAQFESTIRTPVGQTWNTQSVVKKMTTPKVVTKMGAIIEPMAKEDLIKGKSSTAAGKAPALTLGQRDKRAKVGEKRSSQKKPGKRAPKKKRKQ", "length": 785 }, "evidence": [ { "id": "F4JHI1", "url": "https://omabrowser.org/oma/group/F4JHI1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q04500-1", "protein_name": "U3 small nucleolar RNA-associated protein 14", "gene_name": "UTP14", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAKKKSKSRSKSSRRVLDALQLAEREINGEFDNSSDNDKRHDARRNGTVVNLLKRSKGDTNSDEDDIDSESFEDEELNSDEALGSDDDYDILNSKFSQTIRDKKENANYQEEEDEGGYTSIDEEDLMPLSQVWDMDEKTAQSNGNDDEDASPQLKLQDTDISSESSSSEESESESEDDEEEEDPFDEISEDEEDIELNTITSKLIDETKSKAPKRLDTYGSGEANEYVLPSANAASGASGKLSLTDMMNVIDDRQVIENANLLKGKSSTYEVPLPQRIQQRHDRKAAYEISRQEVSKWNDIVQQNRRADHLIFPLNKPTEHNHASAFTRTQDVPQTELQEKVDQVLQESNLANPEKDSKFEELSTAKMTPEEMRKRTTEMRLMRELMFREERKARRLKKIKSKTYRKIKKKELMKNRELAAVSSDEDNEDHDIARAKERMTLKHKTNSKWAKDMIKHGMTNDAETREEMEEMLRQGERLKAKMLDRNSDDEEDGRVQTLSDVENEEKENIDSEALKSKLGKTGVMNMAFMKNGEAREREANKETLRQLRAVENGDDIKLFESDEEETNGENIQINKGRRIYTPGSLESNKDMNELNDHTRKENKVDESRSLENRLRAKNSGQSKNARTNAEGAIIVEEESDGEPLQDGQNNQQDEEAKDVNPWLANESDEEHTVKKQSSKVNVIDKDSSKNVKAMNKMEKAELKQKKKKKGKSNDDEDLLLTADDSTRLKIVDPYGGSDDEQGDNVFMFKQQDVIAEAFAGDDVVAEFQEEKKRVIDDEDDKEVDTTLPGWGEWAGAGSKPKNKKRKFIKKVKGVVNKDKRRDKNLQNVIINEKVNKKNLKYQSSAVPFPFENREQYERSLRMPIGQEWTSRASHQELIKPRIMTKPGQVIDPLKAPFK", "length": 899 }, "evidence": [ { "id": "F4JHI1", "url": "https://omabrowser.org/oma/group/F4JHI1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3T0Q8-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNANQAAESNLLASNQQKELEDLPKDYPLSTSEDEGDKDEERKHQKLLESISSLNGKDRQKLADRSEASLKVSEFSVSSEGSGEKLVLSDLLEPVKTSSSLAAVKKQLNRVKSKKTVELPLHREEIERIHREVAFNKSSQILSKWDPVVLKNRQAEQLVFPLSKPQSAFAPIEHVVNGWKAGTPLEQEIFNLLHKNKQPVTDPLLTPVEKASLKAMSLEEVKMRRAELQRARALQSYYEARARREKRIKSKKYHRILKKGKAKQALKDFEKLQKVNPAAALEELEKLDKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLARNKELTQKVRAASESEEEGEGQEEEEEPLVPDLVNEVQIKANGLNPWMFRNHFIDAKEAEVQKDLEDPAEPEAQETSESEEEKAVVEEETLLKEFEERRSLRQKSELNHMAEPVHRRVTKDPSSQEVLSDLRALCQKLRTENHQSGKQELSSARTAQREEPAREEEEPMLLQRPERARTLDELEELGREGCVENEELPRTAVEGLQLEKNLSNHIGAPKEKKRKEQMIDLQNLLTTKSPSVKSLAVPTTVQELEDEEERDQRQIIKEAFAGDDVIRDFLKEKREAVEASKPKDLDLTLPGWGEWGGIGLKPSAKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNTHAAAHQVQVLPHPFTHHQQFERTIQTPVGSTWNTQRAFQKLTMPKVVTKPGHIIKPIKAEDVGYRSSSRSDLSVVQRNPKRLSIRHKKHLENNCVD", "length": 770 }, "evidence": [ { "id": "F4JHI1", "url": "https://omabrowser.org/oma/group/F4JHI1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q640M1-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "Utp14a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSIKATKGLLALSQQDDLMDLTSNYPLSASEDEGDSDGERKHQKLLEAIGSLSGKNRWKLPERSEAGLKVSEFNVSSEGSGEKLALSDLLGPLKPSSSLAAVKKQLSRVKSKKTLELPLHKREVEQIHREVAFSKTSQTLSKWDSVVQKNREAEQLVFPLEKEPSSFAPMEHVFREWKARTPLEQEVFNLLHKNKQPVTDPLLTPVEKASLKAMSLEEAKIRRAELQRARALQSYYEARARRMKKIKSKKYHKIVKKGKAKKALKDFEQLRKVDPDAALEELEKMEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVVSESEEEGGADEEEALVPDIVNEVQKTADGPNPWMLRSCSRDAKENEIQADSEQLPESAAHEFPENEENDKPVAEEDELLKELEKRRSLRKRSELNQAAEPLGNQETKDSTSQEVLSELRALSKKLSKENHLSKKQKKSPAKAVDLVWEEEPAPEEDEPLLLQRPERMRTLEELEELGKEDSLPNKERPRPSVEGEQVRRNPQNHSKGKNKKEQMISLQNLLTTRTPSVTSLALPTTVEELEDEGARDQKQMIKEAFAGDDVIKEFLKEKREAIQANKPKAVDLTLPGWGEWGGMNLKPSARKRRRFLIKAPEGPPRKDKNLPNVIISEKRNIHAAAHQVRVLPYPFTHHQQFERTIQNPIGSTWNTQRAFQKLTAPKVVTKPGHIIKPITAEDVDCRSSPRSDVPVMQSNPKQHSKHQKQRKKSSIG", "length": 767 }, "evidence": [ { "id": "F4JHI1", "url": "https://omabrowser.org/oma/group/F4JHI1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTANRLAESLLALSQQEELADLPKDYLLSESEDEGDNDGERKHQKLLEAISSLDGKNRRKLAERSEASLKVSEFNVSSEGSGEKLVLADLLEPVKTSSSLATVKKQLSRVKSKKTVELPLNKEEIERIHREVAFNKTAQVLSKWDPVVLKNRQAEQLVFPLEKEEPAIAPIEHVLSGWKARTPLEQEIFNLLHKNKQPVTDPLLTPVEKASLRAMSLEEAKMRRAELQRARALQSYYEAKARREKKIKSKKYHKVVKKGKAKKALKEFEQLRKVNPAAALEELEKIEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEEEGGTEDVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLREFEERRSLRKRSELSQDAEPAGSQETKDSGSQEVLSELRVLSQKLKENHQSRKQKASSEGTIPQVQREEPAPEEEEPLLLQRPERVQTLEELEELGKEECFQNKELPRPVLEGQQSERTPNNRPDAPKEKKKKEQMIDLQNLLTTQSPSVKSLAVPTIEELEDEEERNHRQMIKEAFAGDDVIRDFLKEKREAVEASKPKDVDLTLPGWGEWGGVGLKPSAKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNIHAAAHQVRVLPYPFTHHWQFERTIQTPIGSTWNTQRAFQKLTTPKVVTKPGHIINPIKAEDVGYRSSSRSDLSVIQRNPKRITTRHKKQLKKCSVD", "length": 771 }, "evidence": [ { "id": "F4JHI1", "url": "https://omabrowser.org/oma/group/F4JHI1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VUR2-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "Dmel\\CG12301", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDDEEHYEPKAHKKLLQAIGSLGKVQHIQKSTRDERQSLQDEFQLVKGVSSAETDHAPRAVGLNDLVDILRTSTKHSQTGKKLKNIHGSKKVLQKPLEKPAADRIKRTIGYEGVTKKLGRWDAVVAQQRSAETQIFPLPSETVYVNTAANARPLNTRVKSNLAQELEANNRKLRELRKAQIGDTTDEKELAKQERLLLQKKLTRDELFARRKELAYLKMRESQKSAKARMQNKIKSKKFHKLQKRQKMLEQMKEFELLQKTDPEAALEKLNALEKSRVQERASLRHKNTGTWAKNLQIRAKYDKDVRKDLAEQLAVSRELTQKKQVSDSEDETTKKRVLPEEEDNDYDPFNPWTKRKATEQTENGNGESEGSNWRQYWTKRNKNEKLLEEHRRDLEGVQDNDEQEEKETIRKPLIEVKPAKKKLKKSKVKIENGWEVEDICPTDQKEAKASPNSKAIDDIFEKHEDHIRAKLNKKMEKLRERINKLKEVPVKGKKAKKKDVLQNLKSLALKKTKQQIEIDEPLNYEEDKNSQNNIPAHVEGNTESTEIPAVDTIDPNKVTTLVFTQKKGNSGGFNDALIDDEAAEYDEEDAAAERQLTISQAFEDDDIVADFNRDKSKDSELKNTELQLALPGWGSWAGAGISKEVMERRNKRLLLKLAAPEKRRDENKDNLYLNESASKQARQHMVSSIPFPFRSLADYEASIRAPVGRNFVPETAFRMLTRPAVITRKGQVIEPMTESELVKPDRRLRHIVDRRIKRIPKVPPKAKIA", "length": 771 }, "evidence": [ { "id": "F4JHI1", "url": "https://omabrowser.org/oma/group/F4JHI1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F4JHI1", "url": "https://www.uniprot.org/uniprotkb/F4JHI1" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F4JHI1", "url": "https://www.uniprot.org/uniprotkb/F4JHI1" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F4JHI1", "url": "https://www.uniprot.org/uniprotkb/F4JHI1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F4JHI1", "url": "https://www.uniprot.org/uniprotkb/F4JHI1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 847, "end_pos": 849, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F4JHI1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 855, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F4JHI1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F4JHI1" } ], "lectin_list": [], "domain_list": [], 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"start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F4JHJ3-1", "uniprot_ac": "F4JHJ3", "uniprot_id": "F4JHJ3_ARATH", "mass": { "chemical_mass": 16290.0, "monoisotopic_mass": 16290.0 }, "refseq": { "ac": "NP_680562", "name": "uncharacterized protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680562" }, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F4JHJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F4JHJ3/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein", "type": "synonym", "evidence": [ { "id": "NP_680562", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680562" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "F4JHJ3", "url": "https://www.uniprot.org/uniprotkb/F4JHJ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F4JHJ3", "locus": {} } ], "crossref": [ { "id": "F4JHJ3", "url": "https://alphafold.ebi.ac.uk/entry/F4JHJ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "AT4G02465", "url": "https://bar.utoronto.ca/thalemine/portal.do?externalids=AT4G02465", "database": "Araport", "categories": [ "Protein", "Organism-specific" ] }, { "id": "827982", "url": "https://www.ncbi.nlm.nih.gov/gene/827982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "ath:AT4G02465", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G02465", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_680562", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_680562", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "AT4G02465", "url": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT4G02465", "database": "TAIR", "categories": [ "Protein", "Organism-specific" ] }, { "id": "F4JHJ3", "url": "https://www.uniprot.org/uniprotkb/F4JHJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F4JHJ3-1", "url": "https://www.uniprot.org/uniprotkb/F4JHJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIKWKRKAIRVVASSSGSVWIGRYLIDDDDVDEQSQEFQIQLNYQDMATEEEDKLLDALLSKDGASIAKRLSNCCFAKFGGVGIFMAEQVSSSKLFWRRDMQWRIGRLMRLPLTSLDFIRRRMLYPSFGTKHFLPLCNGK", "length": 141, "header": "tr|F4JHJ3-1|F4JHJ3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JHJ3-1" }, "isoforms": [ { "isoform_ac": "F4JHJ3-1", "url": "https://www.uniprot.org/uniprotkb/F4JHJ3/entry#F4JHJ3-1", "sequence": { "sequence": "MAIKWKRKAIRVVASSSGSVWIGRYLIDDDDVDEQSQEFQIQLNYQDMATEEEDKLLDALLSKDGASIAKRLSNCCFAKFGGVGIFMAEQVSSSKLFWRRDMQWRIGRLMRLPLTSLDFIRRRMLYPSFGTKHFLPLCNGK", "length": 141, "header": "tr|F4JHJ3-1|F4JHJ3_ARATH Isoform 1 of Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=F4JHJ3-1" }, "locus": { "chromosome": "4", "start_pos": 1080962, "end_pos": 1081680, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "AT4G02465.1", "url": "https://www.ensemblgenomes.org/id/AT4G02465.1" }, { "database": "Ensembl Peptide", "id": "AT4G02465.1", "url": "https://www.ensemblgenomes.org/id/AT4G02465.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.", "journal": "Nature", "date": "1999", "authors": "Mayer K, Sch\u00fcller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D\u00fcsterh\u00f6ft A, Stiekema W, Entian K D, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M\u00fcller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham S A, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang Y J, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes H W, Stocker S, Zaccaria P, Bevan M, Wilson R K, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby I K, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie W R", "evidence": [ { "database": "UniProtKB", "id": "F4JHJ3", "url": "https://www.uniprot.org/uniprotkb/F4JHJ3" } ], "reference": [ { "type": "PubMed", "id": "10617198", "url": "https://glygen.org/publication/PubMed/10617198" } ] }, { "title": "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.", "journal": "Plant J.", "date": "2017", "authors": "Cheng Chia-Yi, Krishnakumar Vivek, Chan Agnes P, Thibaud-Nissen Fran\u00e7oise, Schobel Seth, Town Christopher D", "evidence": [ { "database": "UniProtKB", "id": "F4JHJ3", "url": "https://www.uniprot.org/uniprotkb/F4JHJ3" } ], "reference": [ { "type": "PubMed", "id": "27862469", "url": "https://glygen.org/publication/PubMed/27862469" } ] } ], "pathway": [ { "id": "ath:AT4G02465", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ath:AT4G02465", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": 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F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K\u00f6tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream M A, Lyne M, Benes V, Rechmann S, Borkova D, Bl\u00f6cker H, Scharfe M, Grimm M, L\u00f6hnert T H, Dose S, de Haan M, Maarse A, Sch\u00e4fer M, M\u00fcller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M\u00fcndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, 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Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "F4JHW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHW1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "F4JHW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHW1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "F4JHW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F4JHW1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { 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