{
    "bcoid": "GLY_001717",
    "title": "Yeast Domains and Regions Citations (UniProtKB)",
    "description": "The Yeast domain and regions citations (UniProtKB) dataset contains Saccharomyces cerevisiae S288C [taxid:559292] ...",
    "filename_list": "yeast_protein_citations_domains_uniprotkb.csv",
    "filename": "yeast_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P06782-1...",
                "Crystal stru..."
            ],
            [
                "P06782-1...",
                "Structure an..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P06782-1",
                "Crystal structure of the protein kinase domain of yeast AMP-activated protein kinase Snf1.",
                "Biochemical and biophysical research communications",
                "2005-12-02",
                "Rudolph Michael J, Amodeo Gabriele A, Bai Yun, Tong Liang",
                "protein_xref_pubmed",
                "16236260",
                "protein_xref_uniprotkb",
                "P06782"
            ],
            [
                "P06782-1",
                "Structure and dimerization of the kinase domain from yeast Snf1, a member of the Snf1/AMPK protein family.",
                "Structure (London, England : 1993)",
                "2006-03",
                "Nayak Vinod, Zhao Kehao, Wyce Anastasia, Schwartz Marc F, Lo Wan-Sheng, Berger Shelley L, Marmorstein Ronen",
                "protein_xref_pubmed",
                "16531232",
                "protein_xref_uniprotkb",
                "P06782"
            ]
        ]
    },
    "readme": "Name\n   - Yeast Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast domain and regions citations (UniProtKB) dataset contains Saccharomyces cerevisiae S288C [taxid:559292] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: yeast_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: yeast_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_citations_domains_uniprotkb.csv\n      Name: yeast_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"90\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/yeast_protein_citations_domains_uniprotkb.csv"
}