{
    "bcoid": "GLY_001713",
    "title": "SARS-CoV1 Domains and Regions Citations (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-1) domain and regions citations (UniProtKB) dataset contains Severe acute ...",
    "filename_list": "sarscov1_protein_citations_domains_uniprotkb.csv",
    "filename": "sarscov1_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome-related coronavirus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P59595-1...",
                "Cell type-sp..."
            ],
            [
                "P59636-1...",
                "Intracellula..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P59595-1",
                "Cell type-specific cleavage of nucleocapsid protein by effector caspases during SARS coronavirus infection.",
                "Journal of molecular biology",
                "2008 Feb 8",
                "Diemer C, Schneider M, Seebach J, Quaas J, Frosner G, Schatzl HM, Gilch S",
                "protein_xref_pubmed",
                "18155731",
                "protein_xref_uniprotkb",
                "P59595"
            ],
            [
                "P59636-1",
                "Intracellular localization of the SARS coronavirus protein 9b: evidence of active export from the nucleus.",
                "Virus research",
                "2007-07",
                "Moshynskyy Igor, Viswanathan Sathiyanarayanan, Vasilenko Natalia, Lobanov Vladislav, Petric Martin, Babiuk Lorne A, Zakhartchouk Alexander N",
                "protein_xref_pubmed",
                "17448558",
                "protein_xref_uniprotkb",
                "P59636"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) domain and regions citations (UniProtKB) dataset contains Severe acute respiratory syndrome-related coronavirus [taxid:694009] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov1_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov1_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: sarscov1_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov1_protein_citations_domains_uniprotkb.csv\n      Name: sarscov1_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov1_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"3\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/sarscov1_protein_citations_domains_uniprotkb.csv"
}