{
    "bcoid": "GLY_001709",
    "title": "Pig Domains and Regions Citations (UniProtKB)",
    "description": "The Pig domain and regions citations (UniProtKB) dataset contains Sus scrofa [taxid:9823] publication ...",
    "filename_list": "pig_protein_citations_domains_uniprotkb.csv",
    "filename": "pig_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q29122-1...",
                "The unique i..."
            ],
            [
                "P07200-1...",
                "Latent TGF-\u03b2..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q29122-1",
                "The unique insert in myosin VI is a structural calcium-calmodulin binding site.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2004-04-06",
                "Bahloul Amel, Chevreux Guillaume, Wells Amber L, Martin Davy, Nolt Jocelyn, Yang Zhaohui, Chen Li-Qiong, Potier No\u00eblle, Van Dorsselaer Alain, Rosenfeld Steve, Houdusse Anne, Sweeney H Lee",
                "protein_xref_pubmed",
                "15037754",
                "protein_xref_uniprotkb",
                "Q29122"
            ],
            [
                "P07200-1",
                "Latent TGF-\u03b2 structure and activation.",
                "Nature",
                "2011-06-15",
                "Shi Minlong, Zhu Jianghai, Wang Rui, Chen Xing, Mi Lizhi, Walz Thomas, Springer Timothy A",
                "protein_xref_pubmed",
                "21677751",
                "protein_xref_uniprotkb",
                "P07200"
            ]
        ]
    },
    "readme": "Name\n   - Pig Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Pig domain and regions citations (UniProtKB) dataset contains Sus scrofa [taxid:9823] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: pig_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: pig_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_citations_domains_uniprotkb.csv\n      Name: pig_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"3\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/pig_protein_citations_domains_uniprotkb.csv"
}