{
    "bcoid": "GLY_001705",
    "title": "Human Domains and Regions Citations (UniProtKB)",
    "description": "The Human domain and regions citations (UniProtKB) dataset contains Homo sapiens [taxid:9606] publication ...",
    "filename_list": "human_protein_citations_domains_uniprotkb.csv",
    "filename": "human_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0FGR8-1...",
                "Structure of..."
            ],
            [
                "O00370-1...",
                "Structures, ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0FGR8-1",
                "Structure of a lipid-bound extended synaptotagmin indicates a role in lipid transfer.",
                "Nature",
                "2014-06-26",
                "Schauder Curtis M, Wu Xudong, Saheki Yasunori, Narayanaswamy Pradeep, Torta Federico, Wenk Markus R, De Camilli Pietro, Reinisch Karin M",
                "protein_xref_pubmed",
                "24847877",
                "protein_xref_uniprotkb",
                "A0FGR8"
            ],
            [
                "O00370-1",
                "Structures, functions and adaptations of the human LINE-1 ORF2 protein.",
                "Nature",
                "2024-02",
                "Baldwin Eric T, van Eeuwen Trevor, Hoyos David, Zalevsky Arthur, Tchesnokov Egor P, S\u00e1nchez Roberto, Miller Bryant D, Di Stefano Luciano H, Ruiz Francesc Xavier, Hancock Matthew, I\u015fik Esin, Mendez-Dorantes Carlos, Walpole Thomas, Nichols Charles, Wan Paul, Riento Kirsi, Halls-Kass Rowan, Augustin Martin, Lammens Alfred, Jestel Anja, Upla Paula, Xibinaku Kera, Congreve Samantha, Hennink Maximiliaan, Rogala Kacper B, Schneider Anna M, Fairman Jennifer E, Christensen Shawn M, Desrosiers Brian, Bisacchi Gregory S, Saunders Oliver L, Hafeez Nafeeza, Miao Wenyan, Kapeller Rosana, Zaller Dennis M, Sali Andrej, Weichenrieder Oliver, Burns Kathleen H, G\u00f6tte Matthias, Rout Michael P, Arnold Eddy, Greenbaum Benjamin D, Romero Donna L, LaCava John, Taylor Martin S",
                "protein_xref_pubmed",
                "38096902",
                "protein_xref_uniprotkb",
                "O00370"
            ]
        ]
    },
    "readme": "Name\n   - Human Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human domain and regions citations (UniProtKB) dataset contains Homo sapiens [taxid:9606] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: human_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_citations_domains_uniprotkb.csv\n      Name: human_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"739\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_protein_citations_domains_uniprotkb.csv"
}