{
    "bcoid": "GLY_001698",
    "title": "Fruitfly Domains and Regions Citations (UniProtKB)",
    "description": "The Fruitfly domain and regions citations (UniProtKB) dataset contains Drosophila melanogaster [taxid:7227] ...",
    "filename_list": "fruitfly_protein_citations_domains_uniprotkb.csv",
    "filename": "fruitfly_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "B7Z0E2-1...",
                "Pseudo-RNA-B..."
            ],
            [
                "P07664-1...",
                "Structural i..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "B7Z0E2-1",
                "Pseudo-RNA-Binding Domains Mediate RNA Structure Specificity in Upstream of N-Ras.",
                "Cell reports",
                "2020-07-21",
                "Hollmann Nele Merret, Jagtap Pravin Kumar Ankush, Masiewicz Pawel, Guitart Tanit, Simon Bernd, Provaznik Jan, Stein Frank, Haberkant Per, Sweetapple Lara Jayne, Villacorta Laura, Mooijman Dylan, Benes Vladimir, Savitski Mikhail M, Gebauer F\u00e1tima, Hennig Janosch",
                "protein_xref_pubmed",
                "32697992",
                "protein_xref_uniprotkb",
                "B7Z0E2"
            ],
            [
                "P07664-1",
                "Structural insights into highly similar spatial organization of zinc-finger associated domains with a very low sequence similarity.",
                "Structure (London, England : 1993)",
                "2022-07-07",
                "Bonchuk Artem N, Boyko Konstantin M, Nikolaeva Alena Y, Burtseva Anna D, Popov Vladimir O, Georgiev Pavel G",
                "protein_xref_pubmed",
                "35580610",
                "protein_xref_uniprotkb",
                "P07664"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly domain and regions citations (UniProtKB) dataset contains Drosophila melanogaster [taxid:7227] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: fruitfly_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: fruitfly_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_citations_domains_uniprotkb.csv\n      Name: fruitfly_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"46\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/fruitfly_protein_citations_domains_uniprotkb.csv"
}