{
    "bcoid": "GLY_001696",
    "title": "Ebola (EBOV) Domains and Regions Citations (UniProtKB)",
    "description": "The Ebola (EBOV) domain and regions citations (UniProtKB) dataset contains Zaire ebolavirus (strain Mayinga-76) ...",
    "filename_list": "ebov_protein_citations_domains_uniprotkb.csv",
    "filename": "ebov_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Zaire ebolavirus (strain Mayinga-76)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P18272-1...",
                "The Ebola Vi..."
            ],
            [
                "Q05127-1...",
                "Ebolavirus V..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P18272-1",
                "The Ebola Virus Nucleoprotein Recruits the Host PP2A-B56 Phosphatase to Activate Transcriptional Support Activity of VP30.",
                "Molecular cell",
                "2018-01-04",
                "Kruse Thomas, Biedenkopf Nadine, Hertz Emil Peter Thrane, Dietzel Erik, Stalmann Gertrud, L\u00f3pez-M\u00e9ndez Blanca, Davey Norman E, Nilsson Jakob, Becker Stephan",
                "protein_xref_pubmed",
                "29290611",
                "protein_xref_uniprotkb",
                "P18272"
            ],
            [
                "Q05127-1",
                "Ebolavirus VP35 interacts with the cytoplasmic dynein light chain 8.",
                "Journal of virology",
                "2009-07",
                "Kubota Toru, Matsuoka Mayumi, Chang Tsung-Hsien, Bray Mike, Jones Steven, Tashiro Masato, Kato Atsushi, Ozato Keiko",
                "protein_xref_pubmed",
                "19403681",
                "protein_xref_uniprotkb",
                "Q05127"
            ]
        ]
    },
    "readme": "Name\n   - Ebola (EBOV) Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Ebola (EBOV) domain and regions citations (UniProtKB) dataset contains Zaire ebolavirus (strain Mayinga-76) [taxid:128952] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: ebov_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: ebov_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_citations_domains_uniprotkb.csv\n      Name: ebov_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"5\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/ebov_protein_citations_domains_uniprotkb.csv"
}