{
    "bcoid": "GLY_001692",
    "title": "Chicken Domains and Regions Citations (UniProtKB)",
    "description": "The Chicken domain and regions citations (UniProtKB) dataset contains Gallus gallus [taxid:9031] publication ...",
    "filename_list": "chicken_protein_citations_domains_uniprotkb.csv",
    "filename": "chicken_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "F1NHE9-1...",
                "Crystal stru..."
            ],
            [
                "F1NHE9-1...",
                "Structural b..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "F1NHE9-1",
                "Crystal structure of the eukaryotic strong inward-rectifier K+ channel Kir2.2 at 3.1 A resolution.",
                "Science (New York, N.Y.)",
                "2009-12-18",
                "Tao Xiao, Avalos Jose L, Chen Jiayun, MacKinnon Roderick",
                "protein_xref_pubmed",
                "20019282",
                "protein_xref_uniprotkb",
                "F1NHE9"
            ],
            [
                "F1NHE9-1",
                "Structural basis of PIP2 activation of the classical inward rectifier K+ channel Kir2.2.",
                "Nature",
                "2011-08-28",
                "Hansen Scott B, Tao Xiao, MacKinnon Roderick",
                "protein_xref_pubmed",
                "21874019",
                "protein_xref_uniprotkb",
                "F1NHE9"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken domain and regions citations (UniProtKB) dataset contains Gallus gallus [taxid:9031] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: chicken_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_citations_domains_uniprotkb.csv\n      Name: chicken_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"3\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_protein_citations_domains_uniprotkb.csv"
}