{
    "bcoid": "GLY_001687",
    "title": "Arabidopsis Domains and Regions Citations (UniProtKB)",
    "description": "The Arabidopsis domain and regions citations (UniProtKB) dataset contains Arabidopsis thaliana [taxid:3702] ...",
    "filename_list": "arabidopsis_protein_citations_domains_uniprotkb.csv",
    "filename": "arabidopsis_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "F4K933-1...",
                "EFFECTOR OF ..."
            ],
            [
                "Q0WSX8-1...",
                "Characteriza..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "F4K933-1",
                "EFFECTOR OF TRANSCRIPTION2 is involved in xylem differentiation and includes a functional DNA single strand cutting domain.",
                "Developmental biology",
                "2008-01-01",
                "Ivanov Rumen, Tiedemann Jens, Czihal Andreas, Schallau Anna, Diep Le Hong, Mock Hans-Peter, Claus Bernhard, Tewes Annegret, B\u00e4umlein Helmut",
                "protein_xref_pubmed",
                "17991462",
                "protein_xref_uniprotkb",
                "F4K933"
            ],
            [
                "Q0WSX8-1",
                "Characterization of two distinct subfamilies of SUN-domain proteins in Arabidopsis and their interactions with the novel KASH-domain protein AtTIK.",
                "Journal of experimental botany",
                "2014-12",
                "Graumann Katja, Vanrobays Emmanuel, Tutois Sylvie, Probst Aline V, Evans David E, Tatout Christophe",
                "protein_xref_pubmed",
                "25217773",
                "protein_xref_uniprotkb",
                "Q0WSX8"
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis domain and regions citations (UniProtKB) dataset contains Arabidopsis thaliana [taxid:3702] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: arabidopsis_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: arabidopsis_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_citations_domains_uniprotkb.csv\n      Name: arabidopsis_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"167\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/arabidopsis_protein_citations_domains_uniprotkb.csv"
}