{
    "bcoid": "GLY_001683",
    "title": "Yeast Binding Sites Citations (UniProtKB)",
    "description": "The Yeast binding sites citations (UniProtKB) dataset contains Saccharomyces cerevisiae S288C [taxid:559292] ...",
    "filename_list": "yeast_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "yeast_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q05776-1...",
                "Structural a..."
            ],
            [
                "Q05776-1...",
                "Structural b..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q05776-1",
                "Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.",
                "Nature communications",
                "2015-08-03",
                "Watanabe Yasunori, Tamura Yasushi, Kawano Shin, Endo Toshiya",
                "protein_xref_pubmed",
                "26235513",
                "protein_xref_uniprotkb",
                "Q05776"
            ],
            [
                "Q05776-1",
                "Structural basis of intramitochondrial phosphatidic acid transport mediated by Ups1-Mdm35 complex.",
                "EMBO reports",
                "2015-07",
                "Yu Fang, He Fangyuan, Yao Hongyan, Wang Chengyuan, Wang Jianchuan, Li Jianxu, Qi Xiaofeng, Xue Hongwei, Ding Jianping, Zhang Peng",
                "protein_xref_pubmed",
                "26071601",
                "protein_xref_uniprotkb",
                "Q05776"
            ]
        ]
    },
    "readme": "Name\n   - Yeast Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast binding sites citations (UniProtKB) dataset contains Saccharomyces cerevisiae S288C [taxid:559292] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: yeast_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: yeast_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_citations_binding_sites_uniprotkb.csv\n      Name: yeast_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"198\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/yeast_protein_citations_binding_sites_uniprotkb.csv"
}