{
    "bcoid": "GLY_001681",
    "title": "SARS-CoV2 Binding Sites Citations (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) binding sites citations (UniProtKB) dataset contains Severe ...",
    "filename_list": "sarscov2_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "sarscov2_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome coronavirus 2"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DTC9-1...",
                "Structural b..."
            ],
            [
                "P0DTD1-1...",
                "Cryo-EM Stru..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P0DTC9-1",
                "Structural basis of RNA recognition by the SARS-CoV-2 nucleocapsid phosphoprotein.",
                "PLoS pathogens",
                "2020 Dec",
                "Dinesh DC, Chalupska D, Silhan J, Koutna E, Nencka R, Veverka V, Boura E",
                "protein_xref_pubmed",
                "33264373",
                "protein_xref_uniprotkb",
                "P0DTC9"
            ],
            [
                "P0DTD1-1",
                "Cryo-EM Structure of an Extended SARS-CoV-2 Replication and Transcription Complex Reveals an Intermediate State in Cap Synthesis.",
                "Cell",
                "2021-01-07",
                "Yan Liming, Ge Ji, Zheng Litao, Zhang Ying, Gao Yan, Wang Tao, Huang Yucen, Yang Yunxiang, Gao Shan, Li Mingyu, Liu Zhenyu, Wang Haofeng, Li Yingjian, Chen Yu, Guddat Luke W, Wang Quan, Rao Zihe, Lou Zhiyong",
                "protein_xref_pubmed",
                "33232691",
                "protein_xref_uniprotkb",
                "P0DTD1"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nModified on\n   - 2026-08-18T21:04:47.980Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) binding sites citations (UniProtKB) dataset contains Severe acute respiratory syndrome coronavirus 2 [taxid:2697049] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: sarscov2_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_citations_binding_sites_uniprotkb.csv\n      Name: sarscov2_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/sarscov2_protein_citations_binding_sites_uniprotkb.csv"
}