{
    "bcoid": "GLY_001673",
    "title": "Mouse Binding Sites Citations (UniProtKB)",
    "description": "The Mouse binding sites citations (UniProtKB) dataset contains Mus musculus [taxid:10090] publication ...",
    "filename_list": "mouse_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "mouse_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A2A259-1...",
                "Structural b..."
            ],
            [
                "A2A825-1...",
                "Structure of..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A2A259-1",
                "Structural basis for Ca2+ activation of the heteromeric PKD1L3/PKD2L1 channel.",
                "Nature communications",
                "2021-08-11",
                "Su Qiang, Chen Mengying, Wang Yan, Li Bin, Jing Dan, Zhan Xiechao, Yu Yong, Shi Yigong",
                "protein_xref_pubmed",
                "34381056",
                "protein_xref_uniprotkb",
                "A2A259"
            ],
            [
                "A2A825-1",
                "Structure of the ciliogenesis-associated CPLANE complex.",
                "Science advances",
                "2022-04-15",
                "Langousis Gerasimos, Cavadini Simone, Boegholm Niels, Lorentzen Esben, Kempf Georg, Matthias Patrick",
                "protein_xref_pubmed",
                "35427153",
                "protein_xref_uniprotkb",
                "A2A825"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse binding sites citations (UniProtKB) dataset contains Mus musculus [taxid:10090] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: mouse_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_citations_binding_sites_uniprotkb.csv\n      Name: mouse_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"279\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/mouse_protein_citations_binding_sites_uniprotkb.csv"
}