{
    "bcoid": "GLY_001663",
    "title": "Fruitfly Binding Sites Citations (UniProtKB)",
    "description": "The Fruitfly binding sites citations (UniProtKB) dataset contains Drosophila melanogaster [taxid:7227] ...",
    "filename_list": "fruitfly_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "fruitfly_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A8DYP0-1...",
                "PK1 from Dro..."
            ],
            [
                "C0HK99-1...",
                "A scavenger ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A8DYP0-1",
                "PK1 from Drosophila obscurin is an inactive pseudokinase with scaffolding properties.",
                "Open biology",
                "2023-04",
                "Zacharchenko Thomas, Dorendorf Till, Locker Nicolas, Van Dijk Evert, Katzemich Anja, Diederichs Kay, Bullard Belinda, Mayans Olga",
                "protein_xref_pubmed",
                "37121260",
                "protein_xref_uniprotkb",
                "A8DYP0"
            ],
            [
                "C0HK99-1",
                "A scavenger function for a Drosophila peptidoglycan recognition protein.",
                "The Journal of biological chemistry",
                "2003 Feb 28",
                "Mellroth P, Karlsson J, Steiner H",
                "protein_xref_pubmed",
                "12496260",
                "protein_xref_uniprotkb",
                "C0HK99"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly binding sites citations (UniProtKB) dataset contains Drosophila melanogaster [taxid:7227] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: fruitfly_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: fruitfly_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_citations_binding_sites_uniprotkb.csv\n      Name: fruitfly_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"63\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/fruitfly_protein_citations_binding_sites_uniprotkb.csv"
}