{
    "bcoid": "GLY_001654",
    "title": "Bovine Binding Sites Citations (UniProtKB)",
    "description": "The Bovine binding sites citations (UniProtKB) dataset contains Bos taurus [taxid:9913] publication information ...",
    "filename_list": "bovine_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "bovine_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0AAA9T569-1...",
                "Structural b..."
            ],
            [
                "A5PJW8-1...",
                "Structure of..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0AAA9T569-1",
                "Structural basis of prostaglandin efflux by MRP4.",
                "Nature structural & molecular biology",
                "2024-04",
                "Pourmal Sergei, Green Evan, Bajaj Ruchika, Chemmama Ilan E, Knudsen Giselle M, Gupta Meghna, Sali Andrej, Cheng Yifan, Craik Charles S, Kroetz Deanna L, Stroud Robert M",
                "protein_xref_pubmed",
                "38216659",
                "protein_xref_uniprotkb",
                "A0AAA9T569"
            ],
            [
                "A5PJW8-1",
                "Structure of transcribing mammalian RNA polymerase II.",
                "Nature",
                "2016-01-28",
                "Bernecky Carrie, Herzog Franz, Baumeister Wolfgang, Plitzko J\u00fcrgen M, Cramer Patrick",
                "protein_xref_pubmed",
                "26789250",
                "protein_xref_uniprotkb",
                "A5PJW8"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine binding sites citations (UniProtKB) dataset contains Bos taurus [taxid:9913] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: bovine_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: bovine_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_citations_binding_sites_uniprotkb.csv\n      Name: bovine_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"89\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/bovine_protein_citations_binding_sites_uniprotkb.csv"
}