{
    "bcoid": "GLY_001650",
    "title": "Arabidopsis Binding Sites (UniProtKB)",
    "description": "The Arabidopsis binding sites (UniProtKB) dataset contains Arabidopsis thaliana [taxid:3702] interaction ...",
    "filename_list": "arabidopsis_protein_binding_sites_uniprotkb.csv",
    "filename": "arabidopsis_protein_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A0A7EPL0-1...",
                "299..."
            ],
            [
                "A0A0A7EPL0-1...",
                "299..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "binding_site..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "binding_site_uniprot"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "chebi_lig_id"
                },
                {
                    "type": "string",
                    "label": "ligand"
                },
                {
                    "type": "string",
                    "label": "ligand_label"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_ligand_comment"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "start_aa"
                },
                {
                    "type": "string",
                    "label": "end_aa"
                },
                {
                    "type": "string",
                    "label": "site_seq"
                },
                {
                    "type": "string",
                    "label": "glycosite_overlap"
                }
            ],
            [
                "A0A0A7EPL0-1",
                "299",
                "Cys",
                "CHEBI_29105",
                "Zn(2+)",
                "",
                "",
                "protein_xref_uniprotkb_fun",
                "A0A0A7EPL0",
                "protein_xref_uniprotkb",
                "A0A0A7EPL0",
                "ECO_0000255",
                "299",
                "299",
                "Cys",
                "Cys",
                "C",
                ""
            ],
            [
                "A0A0A7EPL0-1",
                "299",
                "Cys",
                "CHEBI_29105",
                "Zn(2+)",
                "",
                "",
                "protein_xref_prosite",
                "PRU00452",
                "protein_xref_uniprotkb",
                "A0A0A7EPL0",
                "",
                "299",
                "299",
                "Cys",
                "Cys",
                "C",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Binding Sites (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis binding sites (UniProtKB) dataset contains Arabidopsis thaliana [taxid:3702] interaction data between UniProtKB canonical protein binding sites and their interacting chemical entity. The physiological ligand is described by it's identifier in the ChEBI ontology, and the UniProt name. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n\n   Pipeline Steps\n   - Step-1: The script extracts the binding site position, ligand info and annotation comments from the Binding_Site_Annotation triples in the triplestore, maps the data to the UniProtKB canonical sequences, then uses the extracted data to generate the dataset in a csv format.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: aadict.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/aadict.csv\n      Name: chebi_ligand.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/chebi_ligand.csv\n   Output Subdomain\n      Name: arabidopsis_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_binding_sites_uniprotkb.csv\n      Name: arabidopsis_protein_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1884\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/arabidopsis_protein_binding_sites_uniprotkb.csv"
}