{
    "bcoid": "GLY_001581",
    "title": "Ebola (BDBV) Protein Citations (IEDB)",
    "description": "The Ebola (BDBV) Protein Citations (IEDB) dataset contains Bundibugyo virus [taxid:565995] UniProtKB ...",
    "filename_list": "bdbv_protein_citations_iedb.csv",
    "filename": "bdbv_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bundibugyo virus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "B8XCN0-1...",
                "Cross-Reacti..."
            ],
            [
                "B8XCN0-1...",
                "Cross-Reacti..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "B8XCN0-1",
                "Cross-Reactive and Potent Neutralizing Antibody Responses in Human Survivors of Natural Ebolavirus Infection.",
                "Cell",
                "2016-01-28",
                "Flyak Andrew I, Shen Xiaoli, Murin Charles D, Turner Hannah L, David Joshua A, Fusco Marnie L, Lampley Rebecca, Kose Nurgun, Ilinykh Philipp A, Kuzmina Natalia, Branchizio Andre, King Hannah, Brown Leland, Bryan Christopher, Davidson Edgar, Doranz Benjamin J, Slaughter James C, Sapparapu Gopal, Klages Curtis, Ksiazek Thomas G, Saphire Erica Ollmann, Ward Andrew B, Bukreyev Alexander, Crowe James E",
                "protein_xref_pubmed",
                "26806128",
                "protein_xref_iedb",
                "500035"
            ],
            [
                "B8XCN0-1",
                "Cross-Reactive and Potent Neutralizing Antibody Responses in Human Survivors of Natural Ebolavirus Infection.",
                "Cell",
                "2016-01-28",
                "Flyak Andrew I, Shen Xiaoli, Murin Charles D, Turner Hannah L, David Joshua A, Fusco Marnie L, Lampley Rebecca, Kose Nurgun, Ilinykh Philipp A, Kuzmina Natalia, Branchizio Andre, King Hannah, Brown Leland, Bryan Christopher, Davidson Edgar, Doranz Benjamin J, Slaughter James C, Sapparapu Gopal, Klages Curtis, Ksiazek Thomas G, Saphire Erica Ollmann, Ward Andrew B, Bukreyev Alexander, Crowe James E",
                "protein_xref_pubmed",
                "26806128",
                "protein_xref_iedb",
                "502007"
            ]
        ]
    },
    "readme": "Name\n   - Ebola (BDBV) Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Ebola (BDBV) Protein Citations (IEDB) dataset contains Bundibugyo virus [taxid:565995] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: bdbv_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_protein_iedb.csv\n   Output Subdomain\n      Name: bdbv_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_protein_citations_iedb.csv\n      Name: bdbv_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/bdbv_protein_citations_iedb.csv"
}