{
    "bcoid": "GLY_001571",
    "title": "Ebola (EBOV) UniProtKB Xref Extended PDB",
    "description": "The Ebola (EBOV) UniProtKB Xref extended PDB IDs contains Zaire ebolavirus (strain Mayinga-76) [taxid:128952] ...",
    "filename_list": "ebov_protein_xref_pdb_extended.csv",
    "filename": "ebov_protein_xref_pdb_extended.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Zaire ebolavirus (strain Mayinga-76)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Pdb cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "xref_"
        ]
    },
    "minitable": {
        "content": [
            [
                "P18272-1...",
                "protein_xref..."
            ],
            [
                "P18272-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P18272-1",
                "protein_xref_pdb_extended",
                "pdb_00004qaz",
                ""
            ],
            [
                "P18272-1",
                "protein_xref_pdb_extended",
                "pdb_00004qb0",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Ebola (EBOV) UniProtKB Xref Extended PDB\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Ebola (EBOV) UniProtKB Xref extended PDB IDs contains Zaire ebolavirus (strain Mayinga-76) [taxid:128952] UniProtKB canonical accessions cross-referenced to PDB database extended accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, GlyGen and PDB. \n   - The Protein Data Bank is a database for the three-dimensional structural data of large biological molecules, such as proteins and nucleic acids. \n\nDescription Domain\n   Keywords\n   - protein 3D structure\n   - PDB\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PDB database accessions/identifiers from the triplestore containing triples from the nt file, reformats the IDs into the extended PDB ID format and extracts the data as a csv dataset.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-zaire-ebolavirus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-zaire-ebolavirus.nt\n   Output Subdomain\n      Name: ebov_protein_xref_pdb_extended.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_xref_pdb_extended.csv\n      Name: ebov_protein_xref_pdb_extended.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_xref_pdb_extended.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"7\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/ebov_protein_xref_pdb_extended.csv"
}