{
    "bcoid": "GLY_001565",
    "title": "Ebola (EBOV) Protein Site Annotation",
    "description": "The Ebola (EBOV) Protein Site Annotation (UniProtKB) dataset contains Zaire ebolavirus (strain Mayinga-76) ...",
    "filename_list": "ebov_protein_site_annotation_uniprotkb.csv",
    "filename": "ebov_protein_site_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Zaire ebolavirus (strain Mayinga-76)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "site annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "P18272-1...",
                "NP..."
            ],
            [
                "P18272-1...",
                "NP..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "ann_type"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "annotation"
                },
                {
                    "type": "string",
                    "label": "ecoid"
                },
                {
                    "type": "string",
                    "label": "ref_aa"
                },
                {
                    "type": "string",
                    "label": "alt_aa"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "P18272-1",
                "NP",
                "Mutagenesis_Annotation",
                "22",
                "22",
                "More than 90% loss of oligomerization; when associated with A-22.",
                "ECO_0000269",
                "H",
                "A",
                "protein_xref_uniprotkb",
                "P18272"
            ],
            [
                "P18272-1",
                "NP",
                "Mutagenesis_Annotation",
                "22",
                "22",
                "More than 90% loss of oligomerization; when associated with A-22.",
                "ECO_0000269",
                "H",
                "A",
                "protein_xref_pubmed",
                "25865894"
            ]
        ]
    },
    "readme": "Name\n   - Ebola (EBOV) Protein Site Annotation\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Ebola (EBOV) Protein Site Annotation (UniProtKB) dataset contains Zaire ebolavirus (strain Mayinga-76) [taxid:128952] site annotations for UniProtKB canonical accessions. The dataset contains information about UniProtKB annotations with their amino acid range. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - site annotation\n   - amino acid range\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script extracts the site annotation triples from the triplestore for the UniProtKB canonical sequnces asnd extracts as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: ebov_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_masterlist.csv\n      Name: uniprot-proteome-zaire-ebolavirus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-zaire-ebolavirus.nt\n   Output Subdomain\n      Name: ebov_protein_site_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_site_annotation_uniprotkb.csv\n      Name: ebov_protein_site_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_site_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"9\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/ebov_protein_site_annotation_uniprotkb.csv"
}