{
    "bcoid": "GLY_001548",
    "title": "Ebola (EBOV) Protein Citations (IEDB)",
    "description": "The Ebola (EBOV) Protein Citations (IEDB) dataset contains Zaire ebolavirus (strain Mayinga-76) [taxid:128952] ...",
    "filename_list": "ebov_protein_citations_iedb.csv",
    "filename": "ebov_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Zaire ebolavirus (strain Mayinga-76)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P18272-1...",
                "Computationa..."
            ],
            [
                "P18272-1...",
                "Identificati..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P18272-1",
                "Computational prediction and identification of HLA-A2.1-specific Ebola virus CTL epitopes.",
                "Virology",
                "2007-04-10",
                "Sundar Krishnan, Boesen Agnieszka, Coico Richard",
                "protein_xref_pubmed",
                "17123567",
                "protein_xref_iedb",
                "16888"
            ],
            [
                "P18272-1",
                "Identification of murine T-cell epitopes in Ebola virus nucleoprotein.",
                "Virology",
                "2004-01-05",
                "Simmons Graham, Lee Anee, Rennekamp Andrew J, Fan Xin, Bates Paul, Shen Hao",
                "protein_xref_pubmed",
                "14972550",
                "protein_xref_iedb",
                "17527"
            ]
        ]
    },
    "readme": "Name\n   - Ebola (EBOV) Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Ebola (EBOV) Protein Citations (IEDB) dataset contains Zaire ebolavirus (strain Mayinga-76) [taxid:128952] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: ebov_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_iedb.csv\n   Output Subdomain\n      Name: ebov_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_citations_iedb.csv\n      Name: ebov_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/ebov_protein_citations_iedb.csv"
}