{
    "bcoid": "GLY_001492",
    "title": "Rat Glycosylation Sites and Glycans (RCSB PDB)",
    "description": "The Rat Glycosylation Sites and Glycans (RCSB PDB) dataset contains Rattus norvegicus [taxid:10116] glycosylation ...",
    "filename_list": "rat_proteoform_glycosylation_sites_rcsb_pdb.csv",
    "filename": "rat_proteoform_glycosylation_sites_rcsb_pdb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycosylation Sites"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "glycosylation_sites_"
        ]
    },
    "minitable": {
        "content": [
            [
                "F1LW30-1...",
                "115..."
            ],
            [
                "F1LW30-1...",
                "226..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycosylatio..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "pdb_id"
                },
                {
                    "type": "string",
                    "label": "pdb_extended_id"
                },
                {
                    "type": "string",
                    "label": "amino_acid_chain"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_pdb"
                },
                {
                    "type": "string",
                    "label": "pdb_glycan_entity_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "start_aa"
                },
                {
                    "type": "string",
                    "label": "end_aa"
                },
                {
                    "type": "string",
                    "label": "site_seq"
                },
                {
                    "type": "string",
                    "label": "n_sequon"
                },
                {
                    "type": "string",
                    "label": "n_sequon_type"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "F1LW30-1",
                "115",
                "Asn",
                "",
                "N-linked",
                "protein_xref_pdb",
                "7ZA1",
                "protein_xref_pdb4glycans",
                "7ZA1",
                "7ZA1",
                "pdb_00007za1",
                "D",
                "70",
                "",
                "115",
                "115",
                "Asn",
                "Asn",
                "N",
                "NVT",
                "NXT",
                ""
            ],
            [
                "F1LW30-1",
                "226",
                "Asn",
                "",
                "N-linked",
                "protein_xref_pdb",
                "7ZA1",
                "protein_xref_pdb4glycans",
                "7ZA1",
                "7ZA1",
                "pdb_00007za1",
                "D",
                "181",
                "",
                "226",
                "226",
                "Asn",
                "Asn",
                "N",
                "NYT",
                "NXT",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Rat Glycosylation Sites and Glycans (RCSB PDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-03-14T20:00:08.127Z\n\nModified on\n   - 2026-08-18T14:27:16.820Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Glycosylation Sites and Glycans (RCSB PDB) dataset contains Rattus norvegicus [taxid:10116] glycosylation sites and associated glycans provided by the RCSB PDB database. Data is retrieved using the RCSB PDB Search API (https://search.rcsb.org/#search-api), Data API (https://data.rcsb.org/index.html#data-api) and Sequence Coordinates Server API (https://sequence-coordinates.rcsb.org/#sequence-coordinates-api). If you use this dataset please provide proper attribution to RCSB PDB and GlyGen.\n\nDescription Domain\n   Keywords\n   - TableMaker\n   - glycan\n   - proteoform\n\n   Pipeline Steps\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: n_sequon_info.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/n_sequon_info.csv\n      Name: rat_glycosites_rcsb_pdb.csv\n      URI: https:/data.glygen.org/ln2downloads/rcsb_pdb/06_11_2026/rat_glycosites_rcsb_pdb.csv\n   Output Subdomain\n      Name: rat_proteoform_glycosylation_sites_rcsb_pdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_glycosylation_sites_rcsb_pdb.csv\n      Name: rat_proteoform_glycosylation_sites_rcsb_pdb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_glycosylation_sites_rcsb_pdb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"70\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_proteoform_glycosylation_sites_rcsb_pdb.csv"
}