{
    "bcoid": "GLY_001452",
    "title": "SARS-CoV-2 Protein Citations (IEDB)",
    "description": "The SARS-CoV-2 Protein Citations (IEDB) dataset contains Severe acute respiratory syndrome coronavirus ...",
    "filename_list": "sarscov2_protein_citations_iedb.csv",
    "filename": "sarscov2_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome coronavirus 2"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A663DJA2-1...",
                "SARS-CoV-2-d..."
            ],
            [
                "A0A663DJA2-1...",
                "Allelic vari..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0A663DJA2-1",
                "SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition.",
                "Nature immunology",
                "2021-01",
                "Nelde Annika, Bilich Tatjana, Heitmann Jonas S, Maringer Yacine, Salih Helmut R, Roerden Malte, L\u00fcbke Maren, Bauer Jens, Rieth Jonas, Wacker Marcel, Peter Andreas, H\u00f6rber Sebastian, Traenkle Bjoern, Kaiser Philipp D, Rothbauer Ulrich, Becker Matthias, Junker Daniel, Krause G\u00e9rard, Strengert Monika, Schneiderhan-Marra Nicole, Templin Markus F, Joos Thomas O, Kowalewski Daniel J, Stos-Zweifel Vlatka, Fehr Michael, Rabsteyn Armin, Mirakaj Valbona, Karbach Julia, J\u00e4ger Elke, Graf Michael, Gruber Lena-Christin, Rachfalski David, Preu\u00df Beate, Hagelstein Ilona, M\u00e4rklin Melanie, Bakchoul Tamam, Gouttefangeas C\u00e9cile, Kohlbacher Oliver, Klein Reinhild, Stevanovi\u0107 Stefan, Rammensee Hans-Georg, Walz Juliane S",
                "protein_xref_pubmed",
                "32999467",
                "protein_xref_iedb",
                "1310502"
            ],
            [
                "A0A663DJA2-1",
                "Allelic variation in class I HLA determines CD8+ T cell repertoire shape and cross-reactive memory responses to SARS-CoV-2.",
                "Science immunology",
                "2022-01-21",
                "Francis Joshua M, Leistritz-Edwards Del, Dunn Augustine, Tarr Christina, Lehman Jesse, Dempsey Conor, Hamel Andrew, Rayon Violeta, Liu Gang, Wang Yuntong, Wille Marcos, Durkin Melissa, Hadley Kane, Sheena Aswathy, Roscoe Benjamin, Ng Mark, Rockwell Graham, Manto Margaret, Gienger Elizabeth, Nickerson Joshua,  , Moarefi Amir, Noble Michael, Malia Thomas, Bardwell Philip D, Gordon William, Swain Joanna, Skoberne Mojca, Sauer Karsten, Harris Tim, Goldrath Ananda W, Shalek Alex K, Coyle Anthony J, Benoist Christophe, Pregibon Daniel C",
                "protein_xref_pubmed",
                "34793243",
                "protein_xref_iedb",
                "1330542"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV-2 Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS-CoV-2 Protein Citations (IEDB) dataset contains Severe acute respiratory syndrome coronavirus 2 [taxid:2697049] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_iedb.csv\n   Output Subdomain\n      Name: sarscov2_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_citations_iedb.csv\n      Name: sarscov2_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"15\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/sarscov2_protein_citations_iedb.csv"
}