{
    "bcoid": "GLY_001446",
    "title": "HCV1a Protein Citations (IEDB)",
    "description": "The HCV1a Protein Citations (IEDB) dataset contains Hepatitis C virus (isolate H77) [taxid:63746] UniProtKB ...",
    "filename_list": "hcv1a_protein_citations_iedb.csv",
    "filename": "hcv1a_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Hepatitis C virus (isolate H77)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P27958-1...",
                "High resolut..."
            ],
            [
                "P27958-1...",
                "Mapping and ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P27958-1",
                "High resolution analysis of cellular immune responses in resolved and persistent hepatitis C virus infection.",
                "Gastroenterology",
                "2004-09",
                "Lauer Georg M, Barnes Eleanor, Lucas Michaela, Timm Joerg, Ouchi Kei, Kim Arthur Y, Day Cheryl L, Robbins Gregory K, Casson Deborah R, Reiser Markus, Dusheiko Geoffrey, Allen Todd M, Chung Raymond T, Walker Bruce D, Klenerman Paul",
                "protein_xref_pubmed",
                "15362047",
                "protein_xref_iedb",
                "420"
            ],
            [
                "P27958-1",
                "Mapping and characterization of B cell linear epitopes in the conservative regions of hepatitis C virus envelope glycoproteins.",
                "Journal of viral hepatitis",
                "2002-05",
                "Olenina L V, Nikolaeva L I, Sobolev B N, Blokhina N P, Archakov A I, Kolesanova E F",
                "protein_xref_pubmed",
                "12010504",
                "protein_xref_iedb",
                "2899"
            ]
        ]
    },
    "readme": "Name\n   - HCV1a Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The HCV1a Protein Citations (IEDB) dataset contains Hepatitis C virus (isolate H77) [taxid:63746] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hcv1a_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1a_protein_iedb.csv\n   Output Subdomain\n      Name: hcv1a_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1a_protein_citations_iedb.csv\n      Name: hcv1a_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1a_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/hcv1a_protein_citations_iedb.csv"
}