{
    "bcoid": "GLY_001440",
    "title": "Arabidopsis Protein Citations (IEDB)",
    "description": "The Arabidopsis Protein Citations (IEDB) dataset contains Arabidopsis thaliana [taxid:3702] UniProtKB ...",
    "filename_list": "arabidopsis_protein_citations_iedb.csv",
    "filename": "arabidopsis_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "O80742-1...",
                "Antibody Bin..."
            ],
            [
                "P53496-1...",
                "Endoplasmic ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "O80742-1",
                "Antibody Binding Epitope Mapping (AbMap) of Hundred Antibodies in a Single Run.",
                "Molecular & cellular proteomics : MCP",
                "2021",
                "Qi Huan, Ma Mingliang, Hu Chuansheng, Xu Zhao-Wei, Wu Fan-Lin, Wang Nan, Lai Dan-Yun, Li Yang, Zhang Hainan, Jiang He-Wei, Meng Qing-Feng, Guo Shujuan, Kang Yani, Zhao Xiaodong, Li Hua, Tao Sheng-Ce",
                "protein_xref_pubmed",
                "33109704",
                "protein_xref_iedb",
                "1863465"
            ],
            [
                "P53496-1",
                "Endoplasmic reticulum aminopeptidase associated with antigen processing defines the composition and structure of MHC class I peptide repertoire in normal and virus-infected cells.",
                "Journal of immunology (Baltimore, Md. : 1950)",
                "2010-03-15",
                "Blanchard Nicolas, Kanaseki Takayuki, Escobar Hernando, Delebecque Fr\u00e9d\u00e9ric, Nagarajan Niranjana A, Reyes-Vargas Eduardo, Crockett David K, Raulet David H, Delgado Julio C, Shastri Nilabh",
                "protein_xref_pubmed",
                "20173027",
                "protein_xref_iedb",
                "195591"
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Protein Citations (IEDB) dataset contains Arabidopsis thaliana [taxid:3702] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: arabidopsis_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_iedb.csv\n   Output Subdomain\n      Name: arabidopsis_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_citations_iedb.csv\n      Name: arabidopsis_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"5\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/arabidopsis_protein_citations_iedb.csv"
}