{
    "bcoid": "GLY_001438",
    "title": "Arabidopsis IEDB epitopes",
    "description": "The Arabidopsis epitope IEDB dataset contains Arabidopsis thaliana [taxid:3702] IEDB epitopes data from ...",
    "filename_list": "arabidopsis_protein_iedb.csv",
    "filename": "arabidopsis_protein_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "IEDB epitopes"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "others"
        ]
    },
    "minitable": {
        "content": [
            [
                "O80742-1...",
                "1863465..."
            ],
            [
                "P53496-1...",
                "195591..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "iedb_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "iedb_id"
                },
                {
                    "type": "string",
                    "label": "epitope_peptide"
                },
                {
                    "type": "string",
                    "label": "epitope_description"
                },
                {
                    "type": "string",
                    "label": "evidence_code"
                },
                {
                    "type": "string",
                    "label": "epitope_start_pos"
                },
                {
                    "type": "string",
                    "label": "epitope_end_pos"
                },
                {
                    "type": "string",
                    "label": "epitope_start_aa"
                },
                {
                    "type": "string",
                    "label": "epitope_end_aa"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "O80742-1",
                "1863465",
                "MIHTPTGSSR",
                "MIHTPTGSSR is a linear peptidic epitope (epitope ID 1863465) tested in 20 B cell assays.",
                "ECO:0000213",
                "1",
                "10",
                "M",
                "R",
                "protein_xref_pubmed",
                "33109704",
                "protein_xref_iedb",
                "1863465"
            ],
            [
                "P53496-1",
                "195591",
                "KSYELPDGQVI",
                "KSYELPDGQVI is a linear peptidic epitope (epitope ID 195591) tested in 31 MHC ligand assays.",
                "ECO:0000213",
                "240",
                "250",
                "K",
                "I",
                "protein_xref_pubmed",
                "20173027",
                "protein_xref_iedb",
                "195591"
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis IEDB epitopes\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis epitope IEDB dataset contains Arabidopsis thaliana [taxid:3702] IEDB epitopes data from the UniProt Proteins Epitope REST API (www.ebi.ac.uk/proteins/api). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - Epitope\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script extracts the epitope data from the input file and maps the UniProtKB accession to the UniProtKB canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: IEDB-arabidopsis-thaliana.tsv\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/IEDB-arabidopsis-thaliana.tsv\n   Output Subdomain\n      Name: arabidopsis_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_iedb.csv\n      Name: arabidopsis_protein_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"5\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/arabidopsis_protein_iedb.csv"
}