{
    "bcoid": "GLY_001431",
    "title": "Yeast Protein Citations (IEDB)",
    "description": "The Yeast Protein Citations (IEDB) dataset contains Saccharomyces cerevisiae S288C [taxid:559292] UniProtKB ...",
    "filename_list": "yeast_protein_citations_iedb.csv",
    "filename": "yeast_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P52960-1...",
                "New tregitop..."
            ],
            [
                "Q01976-1...",
                "Improving T ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P52960-1",
                "New tregitopes inducing adaptive regulatory T cells in mice.",
                "Journal of physiology and pharmacology : an official journal of the Polish Physiological Society",
                "2017-12",
                "Okoniewska K M, Kedzierska A E, Okoniewski J, Slawek A, Grzymajlo K, Chelmonska-Soyta A, Grabowski T",
                "protein_xref_pubmed",
                "29550802",
                "protein_xref_iedb",
                "752869"
            ],
            [
                "Q01976-1",
                "Improving T Cell Receptor On-Target Specificity via Structure-Guided Design.",
                "Molecular therapy : the journal of the American Society of Gene Therapy",
                "2019-02-06",
                "Hellman Lance M, Foley Kendra C, Singh Nishant K, Alonso Jesus A, Riley Timothy P, Devlin Jason R, Ayres Cory M, Keller Grant L J, Zhang Yuting, Vander Kooi Craig W, Nishimura Michael I, Baker Brian M",
                "protein_xref_pubmed",
                "30617019",
                "protein_xref_iedb",
                "910397"
            ]
        ]
    },
    "readme": "Name\n   - Yeast Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast Protein Citations (IEDB) dataset contains Saccharomyces cerevisiae S288C [taxid:559292] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: yeast_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_iedb.csv\n   Output Subdomain\n      Name: yeast_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_citations_iedb.csv\n      Name: yeast_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/yeast_protein_citations_iedb.csv"
}