{
    "bcoid": "GLY_001425",
    "title": "Mouse Protein Citations (IEDB)",
    "description": "The Mouse Protein Citations (IEDB) dataset contains Mus musculus [taxid:10090] UniProtKB accessions mapped ...",
    "filename_list": "mouse_protein_citations_iedb.csv",
    "filename": "mouse_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A075B5K6-1...",
                "The MHC Clas..."
            ],
            [
                "A0A075B5K6-1...",
                "A tissue-bas..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0A075B5K6-1",
                "The MHC Class II Immunopeptidome of Lymph Nodes in Health and in Chemically Induced Colitis.",
                "Journal of immunology (Baltimore, Md. : 1950)",
                "2017-02-01",
                "Fugmann Tim, Sofron Adriana, Ritz Danilo, Bootz Franziska, Neri Dario",
                "protein_xref_pubmed",
                "28011936",
                "protein_xref_iedb",
                "503090"
            ],
            [
                "A0A075B5K6-1",
                "A tissue-based draft map of the murine MHC class I immunopeptidome.",
                "Scientific data",
                "2018-08-07",
                "Schuster Heiko, Shao Wenguang, Weiss Tobias, Pedrioli Patrick G A, Roth Patrick, Weller Michael, Campbell David S, Deutsch Eric W, Moritz Robert L, Planz Oliver, Rammensee Hans-Georg, Aebersold Ruedi, Caron Etienne",
                "protein_xref_pubmed",
                "30084848",
                "protein_xref_iedb",
                "832146"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Protein Citations (IEDB) dataset contains Mus musculus [taxid:10090] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_iedb.csv\n   Output Subdomain\n      Name: mouse_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_citations_iedb.csv\n      Name: mouse_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"11040\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/mouse_protein_citations_iedb.csv"
}