{
    "bcoid": "GLY_001419",
    "title": "Chicken Protein Citations (IEDB)",
    "description": "The Chicken Protein Citations (IEDB) dataset contains Gallus gallus [taxid:9031] UniProtKB accessions ...",
    "filename_list": "chicken_protein_citations_iedb.csv",
    "filename": "chicken_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A1D5NVI1-1...",
                "Chicken majo..."
            ],
            [
                "A0A1D5NVI1-1...",
                "Chicken majo..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0A1D5NVI1-1",
                "Chicken major histocompatibility complex class II molecules of the B haplotype present self and foreign peptides.",
                "Animal genetics",
                "2006-08",
                "Cumberbatch J A, Brewer D, Vidavsky I, Sharif S",
                "protein_xref_pubmed",
                "16879355",
                "protein_xref_iedb",
                "194846"
            ],
            [
                "A0A1D5NVI1-1",
                "Chicken major histocompatibility complex class II molecules of the B haplotype present self and foreign peptides.",
                "Animal genetics",
                "2006-08",
                "Cumberbatch J A, Brewer D, Vidavsky I, Sharif S",
                "protein_xref_pubmed",
                "16879355",
                "protein_xref_iedb",
                "194861"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Citations (IEDB) dataset contains Gallus gallus [taxid:9031] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_iedb.csv\n   Output Subdomain\n      Name: chicken_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_citations_iedb.csv\n      Name: chicken_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"52\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_protein_citations_iedb.csv"
}