{
    "bcoid": "GLY_001411",
    "title": "Mouse Glycan GlycomeAtlas",
    "description": "The Mouse Glycan GlycomeAtlas dataset comprises mouse [TaxID: 10090] tissue glycan information for Mus ...",
    "filename_list": "mouse_proteoform_glycosylation_sites_glycomeatlas.csv",
    "filename": "mouse_proteoform_glycosylation_sites_glycomeatlas.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycan Tissue Expression GlycomeAtlas"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Mus musculus"
        ],
        "file_category": [
            "glycosylation_sites_"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "..."
            ],
            [
                "...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycosylatio..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "source_tissue_id"
                },
                {
                    "type": "string",
                    "label": "source_tissue_name"
                },
                {
                    "type": "string",
                    "label": "n_sequon"
                },
                {
                    "type": "string",
                    "label": "n_sequon_type"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "start_aa"
                },
                {
                    "type": "string",
                    "label": "end_aa"
                },
                {
                    "type": "string",
                    "label": "site_seq"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "",
                "",
                "",
                "G00318AV",
                "N-linked",
                "glycan_xref_doi",
                "10.1016/B978-0-12-373600-0.00012-3",
                "glycan_xref_glycomeatlas",
                "G00318AV",
                "UBERON:0002048",
                "lung",
                "",
                "",
                "",
                "",
                "",
                "",
                "",
                ""
            ],
            [
                "",
                "",
                "",
                "G00318AV",
                "N-linked",
                "glycan_xref_doi",
                "10.1016/B978-0-12-373600-0.00012-3",
                "glycan_xref_glycomeatlas",
                "G00318AV",
                "UBERON:0000992",
                "ovary",
                "",
                "",
                "",
                "",
                "",
                "",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Mouse Glycan GlycomeAtlas\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-03-14T20:00:08.127Z\n\nModified on\n   - 2025-03-04T15:53:49.509Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Glycan GlycomeAtlas dataset comprises mouse [TaxID: 10090] tissue glycan information for Mus musculus. This data is provided by the GlycomeAtlas from GlyCosmos which provides comprehensive information on glycan structures catalogued from various publications. More information can be found here: https://glycosmos.org/glycomeatlas.\n\nDescription Domain\n   Keywords\n   - GlycomeAtlas\n   - glycan\n   - proteoform\n\n   Pipeline Steps\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_classification.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_classification.csv\n      Name: glycan_add_class.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/glycan_add_class.csv\n      Name: n_sequon_info.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/n_sequon_info.csv\n      Name: sample_mapping.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/sample_mapping.csv\n      Name: glycosmos_glycomeatlas_list.csv\n      URI: https:/data.glygen.org/ln2downloads/glycosmos/2025_06_23/glycosmos_glycomeatlas_list.csv\n   Output Subdomain\n      Name: mouse_proteoform_glycosylation_sites_glycomeatlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_proteoform_glycosylation_sites_glycomeatlas.csv\n      Name: mouse_proteoform_glycosylation_sites_glycomeatlas.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_proteoform_glycosylation_sites_glycomeatlas.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/mouse_proteoform_glycosylation_sites_glycomeatlas.csv"
}