{
    "bcoid": "GLY_001409",
    "title": "Human Glycan GlycomeAtlas",
    "description": "The Human Glycan GlycomeAtlas dataset comprises human [TaxID: 9606] tissue glycan information for Homo ...",
    "filename_list": "human_proteoform_glycosylation_sites_glycomeatlas.csv",
    "filename": "human_proteoform_glycosylation_sites_glycomeatlas.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycan Tissue Expression GlycomeAtlas"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Homo sapiens"
        ],
        "file_category": [
            "glycosylation_sites_"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "..."
            ],
            [
                "...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycosylatio..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "source_tissue_id"
                },
                {
                    "type": "string",
                    "label": "source_tissue_name"
                },
                {
                    "type": "string",
                    "label": "n_sequon"
                },
                {
                    "type": "string",
                    "label": "n_sequon_type"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "start_aa"
                },
                {
                    "type": "string",
                    "label": "end_aa"
                },
                {
                    "type": "string",
                    "label": "site_seq"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "",
                "",
                "",
                "G00318AV",
                "N-linked",
                "glycan_xref_doi",
                "10.1016/B978-0-12-373600-0.00012-3",
                "glycan_xref_glycomeatlas",
                "G00318AV",
                "UBERON:0002419",
                "skin gland",
                "",
                "",
                "",
                "",
                "",
                "",
                "",
                ""
            ],
            [
                "",
                "",
                "",
                "G00318AV",
                "N-linked",
                "glycan_xref_doi",
                "10.1016/B978-0-12-373600-0.00012-3",
                "glycan_xref_glycomeatlas",
                "G00318AV",
                "UBERON:0002108",
                "small intestine",
                "",
                "",
                "",
                "",
                "",
                "",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Human Glycan GlycomeAtlas\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-03-14T20:00:08.127Z\n\nModified on\n   - 2025-03-04T15:53:49.509Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Glycan GlycomeAtlas dataset comprises human [TaxID: 9606] tissue glycan information for Homo sapiens. This data is provided by the GlycomeAtlas from GlyCosmos which provides comprehensive information on glycan structures catalogued from various publications. More information can be found here: https://glycosmos.org/glycomeatlas.\n\nDescription Domain\n   Keywords\n   - GlycomeAtlas\n   - glycan\n   - proteoform\n\n   Pipeline Steps\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_classification.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_classification.csv\n      Name: glycan_add_class.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/glycan_add_class.csv\n      Name: n_sequon_info.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/n_sequon_info.csv\n      Name: sample_mapping.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/sample_mapping.csv\n      Name: glycosmos_glycomeatlas_list.csv\n      URI: https:/data.glygen.org/ln2downloads/glycosmos/2025_06_23/glycosmos_glycomeatlas_list.csv\n   Output Subdomain\n      Name: human_proteoform_glycosylation_sites_glycomeatlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_glycosylation_sites_glycomeatlas.csv\n      Name: human_proteoform_glycosylation_sites_glycomeatlas.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_glycosylation_sites_glycomeatlas.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_proteoform_glycosylation_sites_glycomeatlas.csv"
}