{
    "bcoid": "GLY_001397",
    "title": "Glycan Species Citations",
    "description": "The Glycan Species Citations dataset contains details of the publications for GlyGen Organisms.",
    "filename_list": "glycan_citations_species.csv",
    "filename": "glycan_citations_species.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Glycan Species Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Drosophila melanogaster",
            "Homo sapiens",
            "Mus musculus",
            "Sus scrofa",
            "Rattus",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Saccharomyces cerevisiae",
            "Dictyostelium discoideum",
            "Hepacivirus C",
            "Arabidopsis thaliana",
            "Bos taurus",
            "Cricetulus griseus",
            "Danio rerio",
            "Gallus gallus",
            "Hepatitis C virus (isolate H77)",
            "Severe acute respiratory syndrome-related coronavirus"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00008SX...",
                "Unlocking Ca..."
            ],
            [
                "G00025AJ...",
                "Fractionatio..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "tax_id"
                },
                {
                    "type": "string",
                    "label": "tax_name"
                }
            ],
            [
                "G00008SX",
                "Unlocking Cancer Glycomes from Histopathological Formalin-fixed and Paraffin-embedded (FFPE) Tissue Microdissections.",
                "Molecular & cellular proteomics : MCP",
                "2017-04",
                "Hinneburg Hannes, Kora\u0107 Petra, Schirmeister Falko, Gasparov Slavko, Seeberger Peter H, Zoldo\u0161 Vlatka, Kolarich Daniel",
                "glycan_xref_pubmed",
                "28122943",
                "glycan_xref_glytoucan",
                "G00008SX",
                "9606",
                "Homo sapiens"
            ],
            [
                "G00025AJ",
                "Fractionation of L-fucose-containing oligosaccharides on immobilized Aleuria aurantia lectin.",
                "The Journal of biological chemistry",
                "1985-04-25",
                "Yamashita K, Kochibe N, Ohkura T, Ueda I, Kobata A",
                "glycan_xref_pubmed",
                "3988732",
                "glycan_xref_glytoucan",
                "G00025AJ",
                "9606",
                "Homo sapiens"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Species Citations\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-03-14T20:13:36.255Z\n\nModified on\n   - 2025-04-11T18:08:01.662Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Glycan Species Citations dataset contains details of the publications for GlyGen Organisms.\n\nDescription Domain\n   Keywords\n   - Publications\n   - Citations\n   - PubMed\n   - GlyTouCan\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_masterlist.csv\n      Name: glycan_species.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_species.csv\n   Output Subdomain\n      Name: glycan_citations_species.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_citations_species.csv\n      Name: glycan_citations_species.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_citations_species.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\"\n     Description: \"\"\n      Unique Values: \"7307\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/glycan_citations_species.csv"
}