{
    "bcoid": "GLY_001385",
    "title": "Human C-mannosylation Glycosylation Sites citations",
    "description": "This dataset contains publication information for the Human C-mannosylation Glycosylation Sites dataset: ...",
    "filename_list": "human_proteoform_citations_glycosylation_sites_c_man.csv",
    "filename": "human_proteoform_citations_glycosylation_sites_c_man.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P07996-1...",
                "C-mannosylat..."
            ],
            [
                "P10153-1...",
                "Recognition ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P07996-1",
                "C-mannosylation and O-fucosylation of the thrombospondin type 1 module.",
                "The Journal of biological chemistry",
                "2001 Mar 2",
                "Hofsteenge J, Huwiler KG, Macek B, Hess D, Lawler J, Mosher DF, Peter-Katalinic J",
                "protein_xref_pubmed",
                "11067851",
                "protein_xref_glygen_ds",
                "GLY_001254",
                "G61491DK",
                ""
            ],
            [
                "P10153-1",
                "Recognition signal for C-mannosylation of Trp-7 in RNase 2 consists of sequence Trp-x-x-Trp.",
                "Molecular biology of the cell",
                "1998 Feb",
                "Krieg J, Hartmann S, Vicentini A, Glasner W, Hess D, Hofsteenge J",
                "protein_xref_pubmed",
                "9450956",
                "protein_xref_glygen_ds",
                "GLY_001254",
                "G61491DK",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Human C-mannosylation Glycosylation Sites citations\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - This dataset contains publication information for the Human C-mannosylation Glycosylation Sites dataset: https://data.glygen.org/GLY_001254. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - Literature\n   - PubMed\n   - C-mannosylation\n   - C-Man\n\n   Pipeline Steps\n   - Step-1: The script maps the canonical UniProt protein C-Man sites in the dataset to the origin publication.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_c_man.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_c_man.csv\n      Name: human_proteoform_citations_glycosylation_sites_c_man.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_c_man.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"16\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_c_man.csv"
}