{
    "bcoid": "GLY_001296",
    "title": "Zebrafish O-GlcNAc Glycosylation Citations (MCW)",
    "description": "The Zebrafish O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present ...",
    "filename_list": "zebrafish_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filename": "zebrafish_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations O-GlcNAc (MCW)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A0H2UKW6-1...",
                "Upregulation..."
            ],
            [
                "A0A0R4IBT0-1...",
                "Upregulation..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "A0A0H2UKW6-1",
                "Upregulation of Protein O-GlcNAcylation Levels Promotes Zebrafish Fin Regeneration.",
                "Molecular & cellular proteomics : MCP",
                "2025-04",
                "Jia Liyuan, Zheng Hanxue, Feng Juantao, Ding Yi, Sun Xiaotian, Yu Yuan, Hao Xue, Wang Junxiang, Zhang Xinyu, Tian Yuanfeng, Chen Fulin, Cui Jihong",
                "protein_xref_pubmed",
                "40044042",
                "protein_xref_oglcnac_db",
                "A0A0H2UKW6",
                "G49108TO",
                ""
            ],
            [
                "A0A0R4IBT0-1",
                "Upregulation of Protein O-GlcNAcylation Levels Promotes Zebrafish Fin Regeneration.",
                "Molecular & cellular proteomics : MCP",
                "2025-04",
                "Jia Liyuan, Zheng Hanxue, Feng Juantao, Ding Yi, Sun Xiaotian, Yu Yuan, Hao Xue, Wang Junxiang, Zhang Xinyu, Tian Yuanfeng, Chen Fulin, Cui Jihong",
                "protein_xref_pubmed",
                "40044042",
                "protein_xref_oglcnac_db",
                "A0A0R4IBT0",
                "G49108TO",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish O-GlcNAc Glycosylation Citations (MCW)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   -  [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu],  Rex R. Berendt [rberendt@mcw.edu],  Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in the dataset Zebrafish O-GlcNAc Glycosylation Sites (MCW)  https://data.glygen.org/GLY_000517 for Danio rerio [TaxID: 7955] , contributed by Stephanie Olivier's group.\n\nDescription Domain\n   Keywords\n   - O-GlcNAc\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: zebrafish_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      Name: zebrafish_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"601\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv"
}