{
    "bcoid": "GLY_001294",
    "title": "Zebrafish Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Zebrafish Proteoform Phosphorylation Citations (UniProtKB) dataset contains Danio rerio [TaxID:7955] ...",
    "filename_list": "zebrafish_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filename": "zebrafish_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q6PEH4-1...",
                "Phosphorylat..."
            ],
            [
                "Q6P6X9-1...",
                "Online autom..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "Q6PEH4-1",
                "Phosphorylation of Def Regulates Nucleolar p53 Turnover and Cell Cycle Progression through Def Recruitment of Calpain3.",
                "PLoS biology",
                "2016 Sep",
                "Guan Y, Huang D, Chen F, Gao C, Tao T, Shi H, Zhao S, Liao Z, Lo LJ, Wang Y, Chen J, Peng J",
                "protein_xref_pubmed",
                "27657329",
                "protein_xref_uniprotkb",
                "Q6PEH4",
                ""
            ],
            [
                "Q6P6X9-1",
                "Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo.",
                "Journal of proteome research",
                "2008-04",
                "Lemeer Simone, Pinkse Martijn W H, Mohammed Shabaz, van Breukelen Bas, den Hertog Jeroen, Slijper Monique, Heck Albert J R",
                "protein_xref_pubmed",
                "18307296",
                "protein_xref_uniprotkb",
                "Q6P6X9",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nModified on\n   - 2025-10-09T14:51:20.183Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish Proteoform Phosphorylation Citations (UniProtKB) dataset contains Danio rerio [TaxID:7955] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: zebrafish_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: zebrafish_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: zebrafish_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"85\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/zebrafish_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}