{ "bcoid": "GLY_001252", "title": "Zebrafish Glycan TableMaker", "description": "The Zebrafish Glycan Tissue Expression TableMaker dataset provides glycan tissue expression annotations ...", "filename_list": "zebrafish_proteoform_glycosylation_sites_tablemaker.csv", "filename": "zebrafish_proteoform_glycosylation_sites_tablemaker.csv", "filetype": "csv", "categories": { "molecule": [ "Proteoform" ], "tag": [ "Glycan Tissue Expression TableMaker" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ], "species": [ "Danio rerio" ], "file_category": [ "glycosylation_sites_" ] }, "minitable": { "content": [ [ "...", "..." ], [ "...", "..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "glycosylation_subtype" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "source_tissue_name" }, { "type": "string", "label": "source_tissue_id" }, { "type": "string", "label": "source_cell_line_id" }, { "type": "string", "label": "do_id" }, { "type": "string", "label": "strain" }, { "type": "string", "label": "src_file_name" }, { "type": "string", "label": "src_row_idx" }, { "type": "string", "label": "start_pos" }, { "type": "string", "label": "end_pos" }, { "type": "string", "label": "start_aa" }, { "type": "string", "label": "end_aa" }, { "type": "string", "label": "site_seq" }, { "type": "string", "label": "isoform_mapping_notes" } ], [ "", "", "", "G72404VA", "", "", "glycan_xref_pubmed", "37998752", "glycan_xref_tablemaker", "TG1127346", "brain", "UBERON:0000955", "", "", "", "TG1127346.csv", "1", "", "", "", "", "", "" ], [ "", "", "", "G27944BD", "", "", "glycan_xref_pubmed", "37998752", "glycan_xref_tablemaker", "TG1127346", "brain", "UBERON:0000955", "", "", "", "TG1127346.csv", "2", "", "", "", "", "", "" ] ] }, "readme": "Name\n - Zebrafish Glycan TableMaker\n\nVersion\n - v-2.12.1\n\nCreated on\n - 2023-03-14T20:00:08.127Z\n\nModified on\n - 2025-05-29T15:57:18.780Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Dan Lyman [danlyman@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Zebrafish Glycan Tissue Expression TableMaker dataset provides glycan tissue expression annotations for Danio rerio [TaxID: 7955], based on a study using CRISPR/Cas9 to knock down GnT-Ib activity and assess the effects of reduced complex N-glycans on survival, development, and sensory-motor functions [PMID: 37998752]. Annotated by the TableMaker team, this dataset is available through GlyGen. More details: https://glygen.ccrc.uga.edu/tablemaker/.\n\nDescription Domain\n Keywords\n - TableMaker\n - glycan\n\n Pipeline Steps\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: sample_mapping.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/sample_mapping.csv\n Name: TG10381046.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG10381046.csv\n Name: TG1040297.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG1040297.csv\n Name: TG1127346.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG1127346.csv\n Name: TG1131507.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG1131507.csv\n Name: TG1468274.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG1468274.csv\n Name: TG2415036.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG2415036.csv\n Name: TG2727671.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG2727671.csv\n Name: TG2986138.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG2986138.csv\n Name: TG4253352.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG4253352.csv\n Name: TG4951079.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG4951079.csv\n Name: TG4964642.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG4964642.csv\n Name: TG5577100.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG5577100.csv\n Name: TG5664582.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG5664582.csv\n Name: TG7130027.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG7130027.csv\n Name: TG7181079.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG7181079.csv\n Name: TG7680256.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG7680256.csv\n Name: TG7732158.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG7732158.csv\n Name: TG8189974.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG8189974.csv\n Name: TG8741863.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TG8741863.csv\n Name: TP3222006.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TP3222006.csv\n Name: TP5868669.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TP5868669.csv\n Name: TP6077383.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TP6077383.csv\n Name: TP6640575.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2026_06_11/TP6640575.csv\n Output Subdomain\n Name: zebrafish_proteoform_glycosylation_sites_tablemaker.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_glycosylation_sites_tablemaker.csv\n Name: zebrafish_proteoform_glycosylation_sites_tablemaker.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_glycosylation_sites_tablemaker.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/zebrafish_proteoform_glycosylation_sites_tablemaker.csv" }