{
    "bcoid": "GLY_001219",
    "title": "Bovine Protein PTM Annotation (UniProtKB)",
    "description": "The Bovine Protein PTM Annotation (UniProtKB) dataset contains Bos taurus [taxid:9913] PTM annotations ...",
    "filename_list": "bovine_protein_ptm_annotation_uniprotkb.csv",
    "filename": "bovine_protein_ptm_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "PTM annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q7SIB2-1...",
                "protein_xref..."
            ],
            [
                "Q7SIB2-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "ptm_annotation"
                }
            ],
            [
                "Q7SIB2-1",
                "protein_xref_uniprotkb",
                "Q7SIB2",
                "ECO_0000269",
                "Contains 3-hydroxyproline (PubMed:24368846). This modification occurs on the first proline residue in the sequence motif Gly-Pro-Hyp, where Hyp is 4-hydroxyproline (By similarity)."
            ],
            [
                "Q7SIB2-1",
                "protein_xref_pubmed",
                "24368846",
                "ECO_0000269",
                "Contains 3-hydroxyproline (PubMed:24368846). This modification occurs on the first proline residue in the sequence motif Gly-Pro-Hyp, where Hyp is 4-hydroxyproline (By similarity)."
            ]
        ]
    },
    "readme": "Name\n   - Bovine Protein PTM Annotation (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nModified on\n   - 2024-11-04T17:07:32.504Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Protein PTM Annotation (UniProtKB) dataset contains Bos taurus [taxid:9913] PTM annotations for UniProtKB canonical accessions. The annotation is the curated statements of mainly about glycosylation and phosphorylation. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - ptm annotation\n   - glycosylation\n   - phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script extracts the ptm annotation strings from the triplestore for the UniProtKB canonical sequences and extracts as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-bos-taurus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-bos-taurus.nt\n   Output Subdomain\n      Name: bovine_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_ptm_annotation_uniprotkb.csv\n      Name: bovine_protein_ptm_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_ptm_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"155\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/bovine_protein_ptm_annotation_uniprotkb.csv"
}