{
    "bcoid": "GLY_001191",
    "title": "Bovine Protein Citations (UniProtKB)",
    "description": "The Bovine Protein Citations dataset contains publication information for Bos taurus [taxid:9913] UniProtKB ...",
    "filename_list": "bovine_protein_citations_uniprotkb.csv",
    "filename": "bovine_protein_citations_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q3SZ73-1...",
                "Bovine brain..."
            ],
            [
                "Q8MIT6-1...",
                "Calcium sens..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q3SZ73-1",
                "Bovine brain diacylglycerol lipase: substrate specificity and activation by cyclic AMP-dependent protein kinase.",
                "Lipids",
                "2007-04",
                "Rosenberger Thad A, Farooqui Akhlaq A, Horrocks Lloyd A",
                "protein_xref_pubmed",
                "17393225",
                "protein_xref_uniprotkb",
                "Q3SZ73"
            ],
            [
                "Q8MIT6-1",
                "Calcium sensitization of smooth muscle mediated by a Rho-associated protein kinase in hypertension.",
                "Nature",
                "1997 Oct 30",
                "Uehata M, Ishizaki T, Satoh H, Ono T, Kawahara T, Morishita T, Tamakawa H, Yamagami K, Inui J, Maekawa M, Narumiya S",
                "protein_xref_pubmed",
                "9353125",
                "protein_xref_uniprotkb",
                "Q8MIT6"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Protein Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2024-10-30T17:22:43\n\nModified on\n   - 2024-10-30T17:23:54.714Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Protein Citations dataset contains publication information for Bos taurus [taxid:9913] UniProtKB accessions that includes PMID, journal name, date and author and title. Publications of large scale studies, and high frequency publications pertaining to genome sequencing, cDNA, chromosomes have been filtered out. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: bovine_protein_function_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_function_uniprotkb.csv\n      Name: bovine_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_ptm_annotation_uniprotkb.csv\n      Name: bovine_protein_site_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_site_annotation_uniprotkb.csv\n      Name: uniprot-proteome-bos-taurus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-bos-taurus.nt\n   Output Subdomain\n      Name: bovine_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_citations_uniprotkb.csv\n      Name: bovine_protein_citations_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_citations_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"2865\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/bovine_protein_citations_uniprotkb.csv"
}