{
    "bcoid": "GLY_001111",
    "title": "Arabidopsis Proteoform Phosphorylation Citations (iPTMnet)",
    "description": "The Arabidopsis Proteoform Citations (iPTMNet) contains Arabidopsis thaliana [taxid:3702] publication ...",
    "filename_list": "arabidopsis_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filename": "arabidopsis_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P10896-1...",
                "Phosphoprote..."
            ],
            [
                "O48538-1...",
                "Phosphorylat..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P10896-1",
                "Phosphoproteomics of Arabidopsis chloroplasts reveals involvement of the STN7 kinase in phosphorylation of nucleoid protein pTAC16.",
                "FEBS letters",
                "2012-05-07",
                "Ingelsson Bj\u00f6rn, Vener Alexander V",
                "protein_xref_pubmed",
                "22616989",
                "protein_xref_iptmnet",
                "F4IVZ7",
                ""
            ],
            [
                "O48538-1",
                "Phosphorylation of the Arabidopsis AtrbohF NADPH oxidase by OST1 protein kinase.",
                "FEBS letters",
                "2009-09-17",
                "Sirichandra Caroline, Gu Dan, Hu Heng-Cheng, Davanture Marl\u00e8ne, Lee Sangmee, Djaoui Micha\u00ebl, Valot Beno\u00eet, Zivy Michel, Leung Jeffrey, Merlot Sylvain, Kwak June M",
                "protein_xref_pubmed",
                "19716822",
                "protein_xref_iptmnet",
                "O48538",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Proteoform Phosphorylation Citations (iPTMnet)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2021-06-03T17:29:17.656153\n\nModified on\n   - 2024-12-05T19:41:11.034Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Proteoform Citations (iPTMNet) contains Arabidopsis thaliana [taxid:3702] publication information of phosphorylated proteins from iPTMnet. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from iPTMnet. If you use this dataset please provide proper attribution to iPTMnet and GlyGen.\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: arabidopsis_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_proteoform_phosphorylation_sites_iptmnet.csv\n   Output Subdomain\n      Name: arabidopsis_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      Name: arabidopsis_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"7250\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/arabidopsis_proteoform_citations_phosphorylation_sites_iptmnet.csv"
}