{
    "bcoid": "GLY_001108",
    "title": "Arabidopsis Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Arabidopsis Proteoform Phosphorylation Citations (UniProtKB) dataset contains arabidopsis [taxid:3702] ...",
    "filename_list": "arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filename": "arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P57750-1...",
                "Site-specifi..."
            ],
            [
                "Q9C9M7-1...",
                "Diverse phos..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P57750-1",
                "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.",
                "Journal of proteome research",
                "2008-06",
                "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert",
                "protein_xref_pubmed",
                "18433157",
                "protein_xref_uniprotkb",
                "P57750",
                ""
            ],
            [
                "Q9C9M7-1",
                "Diverse phosphoregulatory mechanisms controlling cyclin-dependent kinase-activating kinases in Arabidopsis.",
                "The Plant journal : for cell and molecular biology",
                "2006-09",
                "Shimotohno Akie, Ohno Ryoko, Bisova Katerina, Sakaguchi Norihiro, Huang Jirong, Koncz Csaba, Uchimiya Hirofumi, Umeda Masaaki",
                "protein_xref_pubmed",
                "16856985",
                "protein_xref_uniprotkb",
                "Q9C9M7",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2021-10-15T08:00:04.645468\n\nModified on\n   - 2025-10-09T14:46:53.700Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Proteoform Phosphorylation Citations (UniProtKB) dataset contains arabidopsis [taxid:3702] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: arabidopsis_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"677\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}