{
    "bcoid": "GLY_001026",
    "title": "Chicken Proteoform Phosphorylation Citations (iPTMnet)",
    "description": "The Chicken Proteoform Citations (iPTMNet) contains Gallus gallus [taxid:9031] publication information ...",
    "filename_list": "chicken_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filename": "chicken_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "F1NPG5-1...",
                "CENP-T provi..."
            ],
            [
                "P00523-1...",
                "Mitotic acti..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "F1NPG5-1",
                "CENP-T provides a structural platform for outer kinetochore assembly.",
                "The EMBO journal",
                "2013-02-06",
                "Nishino Tatsuya, Rago Florencia, Hori Tetsuya, Tomii Kentaro, Cheeseman Iain M, Fukagawa Tatsuo",
                "protein_xref_pubmed",
                "23334297",
                "protein_xref_iptmnet",
                "F1NPG5",
                ""
            ],
            [
                "P00523-1",
                "Mitotic activation of protein-tyrosine phosphatase alpha and regulation of its Src-mediated transforming activity by its sites of protein kinase C phosphorylation.",
                "The Journal of biological chemistry",
                "2002 Jun 14",
                "Zheng XM, Resnick RJ, Shalloway D",
                "protein_xref_pubmed",
                "11923305",
                "protein_xref_iptmnet",
                "P00523",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken Proteoform Phosphorylation Citations (iPTMnet)\n\nVersion\n   - v-2.12.1\n\nModified on\n   - 2024-05-17T11:24:22.427Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Proteoform Citations (iPTMNet) contains Gallus gallus [taxid:9031] publication information of phosphorylated proteins from iPTMnet. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from iPTMnet. If you use this dataset please provide proper attribution to iPTMnet and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - iPTMnet\n   - PubMed\n   - Phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: chicken_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_proteoform_phosphorylation_sites_iptmnet.csv\n   Output Subdomain\n      Name: chicken_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      Name: chicken_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"46\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_proteoform_citations_phosphorylation_sites_iptmnet.csv"
}