{
    "bcoid": "GLY_001024",
    "title": "Chicken Glycohydrolases",
    "description": "The Chicken Glycohydrolases dataset contains a list of Gallus gallus [taxid:9301] glycohydrolases derived ...",
    "filename_list": "chicken_protein_glycohydrolase.csv",
    "filename": "chicken_protein_glycohydrolase.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Glycohydrolases"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "pathway/enzymes"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0C7A1-1...",
                "Gallus gallu..."
            ],
            [
                "P27042-1...",
                "Gallus gallu..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "species..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "species"
                },
                {
                    "type": "string",
                    "label": "status"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_name"
                },
                {
                    "type": "string",
                    "label": "ec_number"
                },
                {
                    "type": "string",
                    "label": "brenda_ec_number"
                },
                {
                    "type": "string",
                    "label": "cazy_gh_family"
                },
                {
                    "type": "string",
                    "label": "interpro_id"
                },
                {
                    "type": "string",
                    "label": "pfam_ac"
                },
                {
                    "type": "string",
                    "label": "go_molecular_function"
                }
            ],
            [
                "P0C7A1-1",
                "Gallus gallus (Chicken)",
                "reviewed",
                "ENGASE",
                "Cytosolic endo-beta-N-acetylglucosaminidase (ENGase) (EC 3.2.1.96)",
                "3.2.1.96",
                "",
                "",
                "IPR001073|IPR032979|IPR005201|IPR008983",
                "PF00386|PF03644",
                "beta-N-acetylglucosaminidase activity [GO:0016231]| hydrolase activity [GO:0016787]| hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]| mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity [GO:0033925]"
            ],
            [
                "P27042-1",
                "Gallus gallus (Chicken)",
                "reviewed",
                "LYSG",
                "Lysozyme g (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase) (Goose-type lysozyme)",
                "3.2.1.17",
                "",
                "GH23",
                "IPR002152|IPR023346",
                "",
                "lysozyme activity [GO:0003796]"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Glycohydrolases\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-01-23T17:21:05.892318\n\nModified on\n   - 2024-05-21T14:21:00.920Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Jeet Vora [jeetvora@gwu.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Glycohydrolases dataset contains a list of Gallus gallus [taxid:9301] glycohydrolases derived from UniProtKB database using advanced search and other databases including CAZy, InterPro and Pfam. If you use this dataset please provide proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - glycohydrolase\n   - glycosidase\n   - EC Number\n   - CAZy\n\n   Pipeline Steps\n   - Step-1: The script maps and replaces the UniProtKb accession to the UniProtKB canonical accession\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/chicken_protein_glycohydrolase.csv\n      Name: chicken_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_masterlist.csv\n   Output Subdomain\n      Name: chicken_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_glycohydrolase.csv\n      Name: chicken_protein_glycohydrolase.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_glycohydrolase.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"6\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_protein_glycohydrolase.csv"
}