{
    "bcoid": "GLY_000997",
    "title": "Chicken Protein Information (NCBI RefSeq)",
    "description": "The Chicken Protein Information (NCBI RefSeq) dataset contains Gallus gallus [taxid:9301] protein information ...",
    "filename_list": "chicken_protein_info_refseq.csv",
    "filename": "chicken_protein_info_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Information"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A8V0ZI75-1...",
                "NP_001292367..."
            ],
            [
                "A0A8V0XRM9-1...",
                "NP_001006481..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "p_refseq_ac_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "p_refseq_ac_best_match"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_length"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_summary"
                }
            ],
            [
                "A0A8V0ZI75-1",
                "NP_001292367",
                "exostosin-2",
                "718",
                ""
            ],
            [
                "A0A8V0XRM9-1",
                "NP_001006481",
                "translation initiation factor eIF2B subunit beta",
                "351",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein Information (NCBI RefSeq)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-01-23T17:21:05.888176\n\nModified on\n   - 2024-07-10T11:18:40.271Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Information (NCBI RefSeq) dataset contains Gallus gallus [taxid:9301] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen. \n\nDescription Domain\n   Keywords\n   - protein information\n   - protein length\n   - NCBI RefSeq\n   - protein summary\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_xref_refseq.csv\n      Name: refseq_protein_all_9031.gpff\n      URI: https:/data.glygen.org/ln2downloads/ncbi/refseq/2026_06_01/refseq_protein_all_9031.gpff\n   Output Subdomain\n      Name: chicken_protein_info_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_info_refseq.csv\n      Name: chicken_protein_info_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_info_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"8664\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_protein_info_refseq.csv"
}