{
    "bcoid": "GLY_000982",
    "title": "Chicken Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Chicken Proteoform Phosphorylation Citations (UniProtKB) dataset contains Gallus gallus [taxid:9606] ...",
    "filename_list": "chicken_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filename": "chicken_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "B0I564-1...",
                "The DNA-dama..."
            ],
            [
                "Q9I8D1-1...",
                "Optineurin l..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "B0I564-1",
                "The DNA-damage kinase ATR activates the FANCD2-FANCI clamp by priming it for ubiquitination.",
                "Nature structural & molecular biology",
                "2022-09",
                "Sijacki Tamara, Alc\u00f3n Pablo, Chen Zhuo A, McLaughlin Stephen H, Shakeel Shabih, Rappsilber Juri, Passmore Lori A",
                "protein_xref_pubmed",
                "36050501",
                "protein_xref_uniprotkb",
                "B0I564",
                ""
            ],
            [
                "Q9I8D1-1",
                "Optineurin links myosin VI to the Golgi complex and is involved in Golgi organization and exocytosis.",
                "The Journal of cell biology",
                "2005-04-25",
                "Sahlender Daniela A, Roberts Rhys C, Arden Susan D, Spudich Giulietta, Taylor Marcus J, Luzio J Paul, Kendrick-Jones John, Buss Folma",
                "protein_xref_pubmed",
                "15837803",
                "protein_xref_uniprotkb",
                "Q9I8D1",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2021-10-15T08:00:04.645468\n\nModified on\n   - 2025-10-09T14:43:47.001Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Proteoform Phosphorylation Citations (UniProtKB) dataset contains Gallus gallus [taxid:9606] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: chicken_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: chicken_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: chicken_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"26\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}