{
    "bcoid": "GLY_000946",
    "title": "Pig Protein Information (NCBI RefSeq)",
    "description": "The Pig Protein Information (NCBI RefSeq) dataset contains Sus scrofa [taxid:9823] protein information ...",
    "filename_list": "pig_protein_info_refseq.csv",
    "filename": "pig_protein_info_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Information"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A480DPE1-1...",
                "NP_001192334..."
            ],
            [
                "F1SDA6-1...",
                "NP_001231525..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "p_refseq_ac_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "p_refseq_ac_best_match"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_length"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_summary"
                }
            ],
            [
                "A0A480DPE1-1",
                "NP_001192334",
                "ras GTPase-activating protein-binding protein 1",
                "465",
                ""
            ],
            [
                "F1SDA6-1",
                "NP_001231525",
                "potassium channel subfamily K member 13",
                "410",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Pig Protein Information (NCBI RefSeq)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - 2024-05-17T11:24:19.401Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Pig Protein Information (NCBI RefSeq) dataset contains Sus scrofa [taxid:9823] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein information\n   - protein length\n   - NCBI RefSeq\n   - protein summary\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: pig_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_xref_refseq.csv\n      Name: refseq_protein_all_9823.gpff\n      URI: https:/data.glygen.org/ln2downloads/ncbi/refseq/2026_06_01/refseq_protein_all_9823.gpff\n   Output Subdomain\n      Name: pig_protein_info_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_info_refseq.csv\n      Name: pig_protein_info_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_info_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"10328\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/pig_protein_info_refseq.csv"
}