{
    "bcoid": "GLY_000930",
    "title": "Pig Protein Citations (RefSeq)",
    "description": "The Pig Protein Citations (RefSeq) datasets contains Sus scrofa [taxid:9823] UniProtKB accessions mapped ...",
    "filename_list": "pig_protein_citations_refseq.csv",
    "filename": "pig_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "F1SPE0-1...",
                "Cell type-sp..."
            ],
            [
                "Q5FY69-1...",
                "Apical Na+-D..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "F1SPE0-1",
                "Cell type-specific differences in beta-glucan recognition and signalling in porcine innate immune cells.",
                "Developmental and comparative immunology",
                "2015 Jan",
                "Baert K, Sonck E, Goddeeris BM, Devriendt B, Cox E",
                "protein_xref_pubmed",
                "25453580",
                "protein_xref_refseq",
                "NP_001422262"
            ],
            [
                "Q5FY69-1",
                "Apical Na+-D-glucose cotransporter 1 (SGLT1) activity and protein abundance are expressed along the jejunal crypt-villus axis in the neonatal pig.",
                "American journal of physiology. Gastrointestinal and liver physiology",
                "2011-01",
                "Yang Chengbo, Albin David M, Wang Zirong, Stoll Barbara, Lackeyram Dale, Swanson Kendall C, Yin Yulong, Tappenden Kelly A, Mine Yoshinori, Yada Rickey Y, Burrin Douglas G, Fan Ming Z",
                "protein_xref_pubmed",
                "21030609",
                "protein_xref_refseq",
                "NP_001012297"
            ]
        ]
    },
    "readme": "Name\n   - Pig Protein Citations (RefSeq)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - 2024-05-17T11:24:18.771Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Pig Protein Citations (RefSeq) datasets contains Sus scrofa [taxid:9823] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions.  If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: pig_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_function_refseq.csv\n   Output Subdomain\n      Name: pig_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_citations_refseq.csv\n      Name: pig_protein_citations_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"640\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/pig_protein_citations_refseq.csv"
}