{
    "bcoid": "GLY_000915",
    "title": "Pig Protein Canonical sequences (UniProtKB)",
    "description": "The Pig Protein Canonical (UniProtKB) Sequences dataset contains Sus scrofa [taxid:9823] canonical protein ...",
    "filename_list": "pig_protein_canonicalsequences.fasta",
    "filename": "pig_protein_canonicalsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Canonical Protein fasta Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "sequence"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|A0A024BTL2-1|A0A024BTL2_PIG Isoform 1 of phosphorylase kinase OS=Sus scrofa OX=9823 GN=PHKG1 PE=1 SV=1 CANONICAL=A0A024BTL2-1\nMTKDAALPESHSAQGFYENYEPKEILGRGVSSVVRRCIHKPTCQEYAVKIIDITGGGSFS\nSEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKRGELFDYLTEKV\nTLSEKETRKIMRALLEVICALHKLDIVHRDLKPENILLDDNMNIKLTDFGFSCQLKPGEK\nLREVCGTPSYLAPEIIECSMNDDHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR\nMIMSGHYQFGSPEWDDYSDTVKDLVSRFLVVNPQSRCSAEEALAHPFFQQYVVEEVRHFS\nPRGKFKVIALTVLASVRIYYQYRRVKPVTREIVIRDPYALRPLRRLIDAYAFRIYGHWVK\nKGQQQNRAALFENTPKAVLLSLAEDEDY\n\n\n>tr|A0A286ZHZ3-1|A0A286ZHZ3_PIG Isoform 1 of Translin OS=Sus scrofa OX=9823 GN=TSN PE=1 SV=1 CANONICAL=A0A286ZHZ3-1\nMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLK\nAREHFGTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLESETLVTREAVT\nEILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYARPLHISTFINELDSG\nFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKETVAACSEK\n\n\n>tr|A0A286ZHZ6-1|A0A286ZHZ6_PIG Isoform 1 of Proenkephalin-B OS=Sus scrofa OX=9823 GN=PDYN PE=3 SV=1 CANONICAL=A0A286ZHZ6-1\nMAWQGLLLAACLLVLPSTMADCLSGCSLCAVKTQDGPKPINPLICSLECQAALQPTEEWE\nRCQGLLSFLAPLSLGLEGKEDLESKAALEEPSSELVKYMGPFLKELEKNRFLLSTPAEET\nSLSRSLVEKLRSLPGRLGEETESELMEDAQQNDGAMEAAALDSSVEDPKEQVKRYGGFLR\nKYPKRSSEVAGEGDGDGDKVGHEDLYKRYGGFLRRIRPKLKWDNQKRYGGFLRRQFKVVT\nRSQEDPNAYYEELFDV\n\n\n>tr|A0A286ZI36-1|A0A286ZI36_PIG Isoform 1 of Pyruvate kinase OS=Sus scrofa OX=9823 GN=PKM PE=1 SV=2 CANONICAL=A0A286ZI36-1\nMPKPHSDAGTAFIQTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVET\nLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRAATESFASDPILYRPVAVALDTKGPEIR\nTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENVLWLDYKNICKVVDVGSKVYVDDGL\nISLLVKQKGPDFLVTEVENGGFLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMV\nFASFIRKAADVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIE\nIPAEKVFLAQKMMIGRCNRAGKPVICATQACASPGAYNLARGSIGGYRVSPISSLLHVSH\nNTHTYPLSPTSLHKAILSAHTCSLGGLACSRLCPETVQATSHEYSVPSQMLESMIKKPRP\nTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLVSSQPAIFPLSSAWAWAGME\nVCSGTEQYLLGFYAYRVLSVKSQARVRRCVLGAWRCLIFFLFYLPAHTPLPVPSVLEVAS\nFSRRSTIHSCLQGCEFFLWLQYWAIYLSLDSPEDLSTSALFWKRPQAPAPSCSLFGFCFD\nSTPVPSQLPPPAGGAWACGLHWSLLPTLSRLSWLCMVPAAAPALLSCCTRLRLQSGV\n\n\n>tr|A0A4X1WCQ0-1|A0A286ZI55_PIG Isoform 1 of Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Sus scrofa OX=9823 GN=GPD1 PE=1 SV=1 CANONICAL=A0A4X1WCQ0-1\nMTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN\nVKYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK\nGVDEGPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKEL\nMQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK\nLFCHGPVSSATFLESCGIADLITTCYGGRNRKVAEAFARTGKSIEQLEKEMLNGQKLQGP\nQTAQELHSILQHKGLVDKFPLFMAVYKICYENHPVSEFICCLQNHPEHS\n\n\n>tr|F1S5J8-1|A0A286ZI56_PIG Isoform 1 of Long-chain-fatty-acid--CoA ligase OS=Sus scrofa OX=9823 GN=ACSL5 PE=1 SV=1 CANONICAL=F1S5J8-1\nMLFIFNFLFSPLPTPALICILTFGAAIFLWLIYRPQSIMPLVDLDNQSVGIEGGARRGPF\nQKDYNLMGHYLSDASTVYEIFQRGLALSDNGPCLGYRKPNQPYKWLSYKQVSDRAEYLGS\nFLLHKGYKPSPDELIGIFAQNRPEWIISEYACYTYSMVAVPLYETLGAEAIKYIINKAEI\nATVICDKPEKALILIKDMEKGLIPSLKMIIIMDPFEDDLKERGEKSRIEILSLLDAENIG\nKENFRKPVPPSPEDLSIVCFTSGTTGDPKGAMITHQNIVSNVASFLKRLEYTFQPTPEDV\nSISYLPLAHMFDRIVQAIMFSCGARVGFFQGDIQLLPDDMKTLKPTLFPVVPRLLNKIYD\nKVQSEAKSPLKKFLLNLAIASKFNEVKRGVIRRDSFWDKLIFAKIQESLGGRIHFMITAA\nAPVSSPVLMFFRAAMGCPVFEAYGQTECTAGCTLTSPGDWTSGHVGVPLDCNHVKLEDVA\nDMNYYSVNNEGEICIKGINVFKGYLKEPEKTEEALDKDGWLHTGDIGRWLPNGTLKIIDR\nKKNIFKLAQGEYITPEKIESIYIRSGPVSQIFVHGESLQSFLVGVVVPDPEVLPSFAAKL\nGVKGSFEDLCQNQVVKEAILEDLLRTGKEAGLKSFEQVKCIYLHPEPFSIKNGLLTPTLK\nAKRGELFKYFRTQIDSLYENTQE\n\n\n>tr|A0A286ZI70-1|A0A286ZI70_PIG Isoform 1 of Protein O-mannosyl-transferase TMTC3 OS=Sus scrofa OX=9823 GN=TMTC3 PE=1 SV=3 CANONICAL=A0A286ZI70-1\nMAEINLKEVTLIVGLVAACYWNSLFCGFVFDDVSAILDNKDLHPTTPLKTLFQNDFWGTP\nMSEERSHKSYRPLTVLTFRLNYLFSELKPMSYHLLNMMFHAVVSVIFLKVCKLFLDNRSS\nMIASLLFAVHPIHTEAVTGVVGRAELLSSIFFLAAFLSYTKSKGPDNSIVWTPIALTVFL\nVAVATLCKEQGITVVGICCVYEVFIAQGYTLPLLCTTAGQFLRGKGSIPFSMLQTLIKLI\nVLMFSTLLLVVIRVQVIQSQLPVFTRFDNPAAVSPTPTRQLTFNYLLPVNAWLLLNPSEL\nCCDWTMGTIPLIESFLDVRNLATFIFFCFLGALGVFSLRYSGDSSKTVLMALCLMALPFI\nPASNLFFPVGFVVAERVLYVPSMGFCILVAHGWQKISNKSILKKLSWVCLSMVIFTHALK\nTLHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDI\nGAHMNVGRTYKNLNRTKEAEESYMMAKSLMPQVIPGKKYAARIAPNHLNVYINLANLIRA\nNESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPSKAKEAYLKALELDRNNADLW\nYNLAIVHIELKEPNEALKNFNHALELNPKHKLSLFNSAILMQESGEVKLRPEARKRLLSY\nINEEPQDANGYFNLGMLAMDDRKDTEAEMWMKKAIKLQADFRSALFNLALLYSQTAKELM\nALPVLEELLRYYPDHIKGLILKGDILMNQKKDILGAKKCFEKILEMDPSNVQGKHNLCVV\nYFEEKDLLKAERCLVETLALAPHEEYIQRHLNIVRDKISSSSFVEQPIFPAGKTSGVEGD\nKIPTENMKEIKNEPRATEMIKTSDNKSQSKSNKQLGKNTEKETPHKTTKDIKEIEKKRVA\nALKRLEEIERILNGREPLCVRRCGWNSVSLLWKKWFINL\n\n\n>tr|A0A286ZI97-1|A0A286ZI97_PIG Isoform 1 of Peptidoglycan-recognition protein OS=Sus scrofa OX=9823 GN=PGLYRP1 PE=1 SV=1 CANONICAL=A0A286ZI97-1\nMQALPPPTPQIKAQGQPRAARRLCALPAMARSCALLSWALLALFALLGAAGGGPANCIPI\nVSRREWGALASECSANLRRPVRYVVVSHTAGSTCDNPASCRRQVQNVQHYHVRTLHWCDV\nGYNFLIGEDGLVYEGRGWNTVGAHSGPTWNPLSLGISFMGNYMNRVPPARAIRAAQSLLA\nCGVALGVLRPNYEVKGHRDVQPTLSPGDQLYEIIQKWPHYRA\n\n\n>tr|I3L9S9-1|A0A286ZIB3_PIG Isoform 1 of E3 ubiquitin-protein ligase listerin OS=Sus scrofa OX=9823 GN=LTN1 PE=1 SV=3 CANONICAL=I3L9S9-1\nMGGKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGFGTSHSDLGYVPAIQGAEEIDSL\nVDSDFRMVLRKLSKKDVTTKLKAMQEFGTMCTERDTEIVKGVLPYWPRIFCKISLDHDRR\nVREATQQAFEKLILKVKKHLAPYLKSVMGYWLMAQCDTYTPAASAAKDAFEAAFPPSKQP\nEAIAFCKDEITSVLQDHLIKETPDTLSDPQTVPEEEREAKFYRVVTCSLLALKKLLCLLP\nDNELDSLEEKFKSLLSQNKFWKYGKHSIPQIRSAYFELVSALCQRIPQLMKDEASKVSPS\nVLLSIDDSDPVVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSAMVREGGRGLATVIY\nPYLLPFISKLPQSITDPKLDFFKNFLTSLVAGLSTERTKTSVSECSAIISAFFECLRFIM\nQQNLGEEEIEDMLVNDQLIPFIDEVLKDPRLQDGQLFNHLADTLSSWEAKADLEKDDKIA\nHNLEKVLLNFWERLSEICVEKISEPEANVKSVLGISNLLQILQKPKSSLKLNRKKVGKVR\nFADEMPESNKENEKCVSSEGENSEGSELMAEPSLTQNCSDLISPLRKKPLEDLVCKLAEM\nSINYVNEQKSEQHLRFLSTLLNSFSSSQVFKVLLGDEKQNIVKSKPLEIARLAQKNPAVQ\nFLYQKIIGWLNEDQRKDAGFLVDILYSALRCCDSDLERKAVLDDLIEACSSADKHALVTS\nWLKGDILGEKLVTLADHLCNKDLEPTVSSEPCFSERWTLLSLVLSQHVKNDYLIGEVYVE\nRIIVKLHETLSKAKKLSEAENNDSSVSFICDVAYNYFSSAKGCLLMSSSEDLLLTLFQLC\nAESKEKTHLPDFLICKLKNTWLSGVNLLVHQTGDTYKQSTFLRLSAQWLKNQVQSSSLDI\nTSLQVLLSAVDDLLNALLESEDTYLLRVYIGSVMPDNSEWEKMRQSLPMQWLHRPLLEGR\nLSLNYECFKTDFEEQNTKKLPSHLCTSALLSKMILVALKKEIVLENNELEKIIAELLYSL\nQWYEELDNPPIFLTGFCEMLQKMNITYDNLCGLGNTSGLLQLLFNRSRENGTLWSLIIAK\nLILSRSVSSDEVKRHYRRKEGFFPLTEGNMHTIQSLCPFLPKEDKKEFIAQCIPALLAWT\nKEDVCSINGGFGHLAIFNSCLQTKSIDDGELLHGILKILITWKKDHEDIFLFSCNLSEVS\nPEILGVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTNENQALYSVPLVQLFA\nCVSCDLACELSAFFDSTTPDTTGSLPVNLISEWKEFFSQGIHSLLLPLLVTFTDESKDTS\nETSFQNAMLKPMCETLTYIPKDQLLSQKLPARLIAGQKTNLPEYLQNLLNTLAPLLLYRA\nRPVQIAVYHMLYKLMPEFPQYDQDNLKSYGDEEEEPALSPPAALMSLLSTQEDLLENVLG\nCIPVGQIVTIKPLSEDFCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLY\nHLFRLMPENPTFSETAIELSNKDPKTFFTEELQLSIRDTSTLPYHIPHLACSVYHMTLKD\nLPAMVRLWWNSSEKRVFNIVDRFTSKYVSNVLSFQEISSVQTSTQLFNGMTVKARATTRE\nVMATYTIEDIVIELIIQLPSNYPLGSITVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSI\nMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSN\nKSTCPLCRETFF\n\n\n</pre>"
    },
    "readme": "Name\n   - Pig Protein Canonical sequences (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nModified on\n   - 2024-06-03T20:31:01.317Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Pig Protein Canonical (UniProtKB) Sequences dataset contains Sus scrofa [taxid:9823] canonical protein fasta sequences from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein sequence\n   - fasta\n   - UniProtKB canonical accessions\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all pig canonical accessions data from the triplestore containing triples from nt file and extracts it into a dataset as fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sus-scrofa.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-sus-scrofa.nt\n   Output Subdomain\n      Name: pig_protein_canonicalsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_canonicalsequences.fasta\n      Name: pig_protein_canonicalsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_canonicalsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"22161\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/pig_protein_canonicalsequences.fasta"
}