{
    "bcoid": "GLY_000887",
    "title": "Dicty Proteoform Citations (GlyConnect)",
    "description": "The Dicty Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...",
    "filename_list": "dicty_proteoform_citations_glycosylation_sites_glyconnect.csv",
    "filename": "dicty_proteoform_citations_glycosylation_sites_glyconnect.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Dictyostelium discoideum"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P14328-1...",
                "Multiple O-g..."
            ],
            [
                "P52285-1...",
                "Analysis of ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P14328-1",
                "Multiple O-glycoforms on the spore coat protein SP96 in Dictyostelium discoideum. Fuc(alpha1-3)GlcNAc-alpha-1-P-Ser is the major modification.",
                "The Journal of biological chemistry",
                "2000 Apr 21",
                "Mreyen M, Champion A, Srinivasan S, Karuso P, Williams KL, Packer NH",
                "protein_xref_pubmed",
                "10766852",
                "protein_xref_glyconnect",
                "578",
                "G96881BQ",
                ""
            ],
            [
                "P52285-1",
                "Analysis of Skp1 glycosylation and nuclear enrichment in Dictyostelium.",
                "Glycobiology",
                "2001-04",
                "Sassi S, Sweetinburgh M, Erogul J, Zhang P, Teng-Umnuay P, West C M",
                "protein_xref_pubmed",
                "11358877",
                "protein_xref_glyconnect",
                "191",
                "G05897GU",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Dicty Proteoform Citations (GlyConnect)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2024-01-29T20:20:36\n\nModified on\n   - 2024-12-05T19:24:46.152Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n   - \n\nUsability Domain\n   - The Dicty Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID). The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - GlyConnect\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: dicty_proteoform_citations_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_proteoform_citations_glycosylation_sites_glyconnect.csv\n      Name: dicty_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/dicty_proteoform_citations_glycosylation_sites_glyconnect.csv"
}