{
    "bcoid": "GLY_000734",
    "title": "Rat Proteoform Glycomics Study Citations (UniCarbKB)",
    "description": "The dataset contains publication information of the PMIDs present in the Rat Glycosylation Sites UniCarbKB ...",
    "filename_list": "rat_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv",
    "filename": "rat_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "UniCarbKB glycosylation sites glycomics study citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "Complete spa..."
            ],
            [
                "...",
                "Complete spa..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "",
                "Complete spatial characterisation of N-glycosylation upon striatal neuroinflammation in the rodent brain.",
                "Journal of neuroinflammation",
                "2021 May 16",
                "Rebelo AL, Gubinelli F, Roost P, Jan C, Brouillet E, Van Camp N, Drake RR, Saldova R, Pandit A",
                "protein_xref_pubmed",
                "33993882",
                "protein_xref_unicarbkb_ds",
                "GLY_000733",
                "G22768VO",
                ""
            ],
            [
                "",
                "Complete spatial characterisation of N-glycosylation upon striatal neuroinflammation in the rodent brain.",
                "Journal of neuroinflammation",
                "2021 May 16",
                "Rebelo AL, Gubinelli F, Roost P, Jan C, Brouillet E, Van Camp N, Drake RR, Saldova R, Pandit A",
                "protein_xref_pubmed",
                "33993882",
                "protein_xref_unicarbkb_ds",
                "GLY_000733",
                "G35619UY",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteoform Glycomics Study Citations (UniCarbKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-03-10T04:00:33.274Z\n\nModified on\n   - 2024-05-17T11:24:11.144Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Matthew Campbell [m.campbell2@griffith.edu.au]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset contains publication information of the PMIDs present in the Rat Glycosylation Sites UniCarbKB Glycomics Study dataset (https://data.glygen.org/GLY_000733).\n\nDescription Domain\n   Keywords\n   - Publications\n   - Citations\n   - PubMed\n   - glycomics\n   - UniCarbKB\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMIDs from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv\n      Name: rat_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv"
}