{
    "bcoid": "GLY_000717",
    "title": "Human O-Glucosylation Glycosylation Citations",
    "description": "The O-Glucosylation Glycosylation Citations datasets contain details of the publications present in the ...",
    "filename_list": "human_proteoform_citations_glycosylation_sites_o_gluc.csv, human_proteoform_citations_glycosylation_sites_o_gluc_predicted.csv",
    "filename": "human_proteoform_citations_glycosylation_sites_o_gluc.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Proteoform"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P35555-1...",
                "POGLUT2 and ..."
            ],
            [
                "P35556-1...",
                "POGLUT2 and ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P35555-1",
                "POGLUT2 and POGLUT3 O-glucosylate multiple EGF repeats in fibrillin-1, -2, and LTBP1 and promote secretion of fibrillin-1.",
                "The Journal of biological chemistry",
                "2021 Sep",
                "Williamson DB, Sohn CJ, Ito A, Haltiwanger RS",
                "protein_xref_pubmed",
                "34411563",
                "protein_xref_data_submission",
                "GLY_000716",
                "G71142DF",
                ""
            ],
            [
                "P35556-1",
                "POGLUT2 and POGLUT3 O-glucosylate multiple EGF repeats in fibrillin-1, -2, and LTBP1 and promote secretion of fibrillin-1.",
                "The Journal of biological chemistry",
                "2021 Sep",
                "Williamson DB, Sohn CJ, Ito A, Haltiwanger RS",
                "protein_xref_pubmed",
                "34411563",
                "protein_xref_data_submission",
                "GLY_000716",
                "G71142DF",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Human O-Glucosylation Glycosylation Citations\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-02-28T15:39:52.735Z\n\nModified on\n   - 2025-03-19T17:33:33.763Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Daniel Williamson [daniel.williamson25@uga.edu], Daniel Williamson [daniel.williamson25@uga.edu], Robert S Haltiwanger [rhalti@uga.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The O-Glucosylation Glycosylation Citations datasets contain details of the publications present in the Human O-Glucosylation Glycosylation Sites  experimental and predicted datasets https://data.glygen.org/GLY_000716, contributed by Daniel Williamson from Bob Haltiwanger's group. The data from this paper has been split into two datasets, one which contains details of the publications present in the experimental dataset (human_proteoform_citations_glycosylation_sites_o_gluc.csv) and the other contains publications present in the predicted dataset (human_proteoform_citations_glycosylation_sites_o_gluc_predicted.csv)\n\nDescription Domain\n   Keywords\n   - O-Gluc\n   - O-Glucosylation\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_o_gluc.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_o_gluc.csv\n      Name: human_proteoform_citations_glycosylation_sites_o_gluc_predicted.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_o_gluc_predicted.csv\n      Name: human_proteoform_citations_glycosylation_sites_o_gluc.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_o_gluc.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"5\"\n      Name: human_proteoform_citations_glycosylation_sites_o_gluc_predicted.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_o_gluc_predicted.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"51\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_o_gluc.csv"
}