{
    "bcoid": "GLY_000714",
    "title": "Rat O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)",
    "description": "The Rat O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication ...",
    "filename_list": "rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv",
    "filename": "rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations O-GlcNAc (O-GlcNAc Atlas)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "Tau post-tra..."
            ],
            [
                "A0A0G2JT63-1...",
                "Quantitative..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "",
                "Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice.",
                "Nature neuroscience",
                "2015 Aug",
                "Morris M, Knudsen GM, Maeda S, Trinidad JC, Ioanoviciu A, Burlingame AL, Mucke L",
                "protein_xref_pubmed",
                "26192747",
                "protein_xref_pubmed",
                "26192747",
                "G49108TO",
                ""
            ],
            [
                "A0A0G2JT63-1",
                "Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.",
                "The Journal of pathology",
                "2017 Sep",
                "Wang S, Yang F, Petyuk VA, Shukla AK, Monroe ME, Gritsenko MA, Rodland KD, Smith RD, Qian WJ, Gong CX, Liu T",
                "protein_xref_pubmed",
                "28657654",
                "protein_xref_oglcnac_atlas",
                "A0A0G2JT63",
                "G49108TO",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Rat O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-02-27T21:08:01.227Z\n\nModified on\n   - 2024-05-17T11:24:10.375Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Jungfeng Ma [junfeng.ma@georgetown.edu ]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication present in the dataset Rat O-GlcNAc Glycosylation Sites (O-GlcNAc Atlas)  https://data.glygen.org/GLY_000710, contributed by Jungfeng Ma's group.\n\nDescription Domain\n   Keywords\n   - O-GlcNAc\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n      Name: rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"172\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv"
}