{
    "bcoid": "GLY_000697",
    "title": "Rat Proteoform O-GlcNAc Glycosylation Citations (MCW)",
    "description": "The Rat O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in ...",
    "filename_list": "rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filename": "rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations O-GlcNAc (MCW)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A096MJA9-1...",
                "Neuronal act..."
            ],
            [
                "A0A0G2JUG7-1...",
                "Neuronal act..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "A0A096MJA9-1",
                "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.",
                "Developmental cell",
                "2024-08-19",
                "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin",
                "protein_xref_pubmed",
                "38843836",
                "protein_xref_oglcnac_db",
                "A0A096MJA9",
                "G49108TO",
                ""
            ],
            [
                "A0A0G2JUG7-1",
                "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.",
                "Developmental cell",
                "2024-08-19",
                "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin",
                "protein_xref_pubmed",
                "38843836",
                "protein_xref_oglcnac_db",
                "A0A0G2JUG7",
                "G49108TO",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteoform O-GlcNAc Glycosylation Citations (MCW)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2022-09-06T16:51:28.071892\n\nModified on\n   - 2025-10-09T14:06:49.339Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu],  Rex R. Berendt [rberendt@mcw.edu],  Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in the dataset Rat O-GlcNAc Glycosylation Sites (MCW) contributed by Stephanie Olivier's group.\n\nDescription Domain\n   Keywords\n   - O-GlcNAc\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      Name: rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1157\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv"
}